Citrus Sinensis ID: 001258

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110---
Protein Sequence
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHccccHHHHHHHHHHHccccEEEHHHHHHHHHcccHHHHHHHHcccEEEcccccEEEEEEEEHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHcEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccEEEEEEccccccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEccEEEccccccEEEEEEcccccEEEEEEEEccccEEEEEcccccEEEEcccccccEEEEEccccccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEcccccccEEEEcccccccEEEEccccccEEEEEcccccEEEEEccccccEEEEEccccccccccEEEEEEEccccEEEEEEcccEEEEEEccccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEccccccccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHccccccccccccEEEEEEEccccccEEEccccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEEccccEEEEEEEEEEEEcccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEccccccccccccccEEEEEEcccccHHHHHHHHccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEccccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEccccccEccccccccc
Coil and Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFedevhngnwdDVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENfreneqlskygdtksARSIMLVELKKLieanplfrdklqfpnlknsRLRTLINQSLNWQHqlcknprpnpdiktlfvdhtcgqpngarapspannpllgslpkagvfpplgahgpfqptpapvptplagwmsnpptvthpavsggaiglgspsipaaalkhprtpptnpsvdypsgdsdhlskrtrpigisdeinlpvnvlpvsftghshshshsqafstpedlpktvtrtlnqgsspmsmdfhpVQQTLLLVGtnvgdiglwevgsrerlvlrnfkvwdlgacsmplqaalvkdpgvsvnrviwspdgslfgvAYSRHIVQIYSyhggdevrQHLEidahvggvndiafshpnkqlcvitcgddktiKVWDATngakqyifegheapvysvcphhkeNIQFIFSTALDGKIKAWLYDnlgsrvdyeapgrwcttmaysadgtrtyqgfrkrslgvvqfdttknrflaagddfsikfwDMDSVQLLTSIdadgglpasprirfnkdgclLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskptisPISAAAAAAATSAGLADRAAsmvsipgmngdvrsladvkpriteesndkSKVWKLtelsepnqcrslrlpenlrATKISRLIFTNSGNAILALASNAIHLLWKWQrternssgkatasvapqlwqppsgimmtndvtdsnpeeavpcfalskndsyvmsasggkislfnmmtfktmatfmppppaatflafhpqdnniiaigmddssiqIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVssgadsqlcvwssdgwekqknrflqiptgrtptaqsdtrvqfhQDQIHFLVVHETQLAIFETTKLEcvkqwvpressapithatfscdsqLVYACFLDATVCVFSAANLKLrcrinpsaylpagvssnvhplviaahpqepnefalglsdggvhvfeplesegkwgvpppvdngstssmpatppvggsgsdqaqr
Flexible Loop (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGftkvddnrysMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENeqlskygdtksaRSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSqafstpedlpkTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGsrvdyeapgrwCTTMAYSADGTRTYQGFRKrslgvvqfdttKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYdasrtsenskptiSPISAAAAAAATSAGLADRAASMvsipgmngdvrsladvkpriteesndkskvwkltelsepnqcrslrlpeNLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNssgkatasvapqlwqppsgIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGstssmpatppvggsgsdqaqr
Low Complexity Region (SEG)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGpfqptpapvptpLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGhshshshsQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIsaaaaaaatsagladraasMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNmmtfktmatfmppppaatflafHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Disordered region (IsUnstruct)
******ELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPR*NPDIKTLFVDHTC***************************************************************************************************************EINLPVNVLPVSF*************************************FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY********************************************************************************LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR**************************************VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP**********TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE**************************************
Disordered Region (DISOPRED)
****SRE*VFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRE***************IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQP******T****WMS**********************************TNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP**************************
Disordered Region (DISEMBL)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT****************DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA**********ISPIS**************RAASMVSIPGMNGDVRSLADVKPRI********KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT************APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Disordered Region (DISPRO)
**SLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATP************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1113	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	0.991	0.976	0.829	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.982	0.975	0.814	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.990	0.970	0.683	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.953	0.938	0.618	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.955	0.960	0.596	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.242	0.199	0.292	2e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.419	0.306	0.224	7e-15
Q54KL5	335	WD repeat-containing prot	yes	no	0.185	0.617	0.254	5e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.386	0.255	0.219	1e-11
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.425	0.376	0.209	2e-11

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1958 bits (5073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 946/1140 (82%), Positives = 1026/1140 (90%), Gaps = 36/1140 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PT +PVPTPLAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct: 241  PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            S+H+SKRTRP+GISDE+NL VN+LP+SF+G +H HS   AF  P+DLPKTV RTL+QGSS
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD+VQLLT+ID DGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLA 657

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
            VS N+N IKI+A SDG+RLL TFEN+      +SE+SKP I+ I+AAAAAAATSAG ADR
Sbjct: 658  VSGNENVIKIMANSDGLRLLHTFENI------SSESSKPAINSIAAAAAAAATSAGHADR 711

Query: 695  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
            +A++VSI GMNGD R++ DVKP ITEESNDKSK+WKLTE+SEP+QCRSLRLPENLR  KI
Sbjct: 712  SANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKI 771

Query: 755  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
            SRLIFTNSGNAILALASNAIHLLWKWQR ERN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 772  SRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAE 831

Query: 815  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
            +NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 832  TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 891

Query: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
            IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 892  IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 951

Query: 935  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
            EKQ+++ L +P GR  +A SDTRVQFHQDQ HFLVVHETQLAI+ETTKLEC+KQW  RES
Sbjct: 952  EKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRES 1011

Query: 995  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVHPLVIA 1053
             APITHATFSCDSQLVYA F+DATVCVFS+ANL+LRCR+NPSAYLPA +S SNVHPLVIA
Sbjct: 1012 LAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1071

Query: 1054 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            AHPQEPN FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S  P  P VG S SDQ QR
Sbjct: 1072 AHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1941 bits (5027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 929/1140 (81%), Positives = 1016/1140 (89%), Gaps = 47/1140 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTP+PVPTPLAGWMS+P +V HPAVSGG I LG+PSI  AALKHPRTPP+N +VDYPSGD
Sbjct: 241  PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSI-QAALKHPRTPPSNSAVDYPSGD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDH+SKRTRP+GISDE++L VN+LP++F G +H H+  Q F  P+DLPKTV RTL+QGSS
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct: 358  PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct: 418  VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 478  CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DN+GSRVDYEAPGRWCTTMAYSADGTR                          TYQGF K
Sbjct: 538  DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT+IDADGGL ASPRIRFNK+G LLA
Sbjct: 598  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLLA 657

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
            VS NDN IK++A SDG+RLL T ENL      +SE+SKP I+ I            + +R
Sbjct: 658  VSANDNMIKVMANSDGLRLLHTVENL------SSESSKPAINSIP-----------MVER 700

Query: 695  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
             AS+VSIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 755  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
            SRLIFTNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV +
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAE 820

Query: 815  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
            +NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 821  TNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 880

Query: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
            IAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGW
Sbjct: 881  IAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGW 940

Query: 935  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
            EKQK++ LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES
Sbjct: 941  EKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRES 1000

Query: 995  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVHPLVIA 1053
            +APITHATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S SNVHPLVIA
Sbjct: 1001 AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIA 1060

Query: 1054 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            AHPQE N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1061 AHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1618 bits (4190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1146 (68%), Positives = 913/1146 (79%), Gaps = 44/1146 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFK+TVH+LE+ESGFFFNM+YFED V  G WDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDK D AKAV+ILVK+LKVFSTFNEELFKEIT LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L NFRENEQLSKYGDTKSAR IML ELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCG PNGA  PSP  N L+GS+PK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKH--PRTPPTNP-SVDYP 297
            PTPAP+ T LAGWM NP +V HP VS G IGLG+P+   + LK   PR+PPTN  S+DY 
Sbjct: 241  PTPAPLTTSLAGWMPNP-SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQ 299

Query: 298  SGDSDHLSKRTRPIGISDEIN-LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
            + DS+ + KR RP GISD +N LPVNVLPV++ G SH+H+    +ST +DLPK V+R L+
Sbjct: 300  TADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHA---TYST-DDLPKNVSRILS 355

Query: 357  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
            QGS+  SMDFHPVQQT+LLVGTN+GDI +WEVGSRE+LV R+FKVWDL  C++ LQA+L 
Sbjct: 356  QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415

Query: 417  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
             +   +VNRV+WSPDG L GVAYS+HIV IYSYHGG+++R HLEIDAH G VND+AFS P
Sbjct: 416  SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475

Query: 477  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
            N+QLCV+TCG+DKTIKVWDA  G K + FEGHEAPVYSVCPH KENIQFIFSTA+DGKIK
Sbjct: 476  NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535

Query: 537  AWLYDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQ 570
            AWLYDN+GSRVDY+APGR CT+MAY ADGTR                          TY 
Sbjct: 536  AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595

Query: 571  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
            G  KRS+GVVQFDT KN+FL AGD+F +KFWDMDSV LL+S  A+GGLP+SP +R NK+G
Sbjct: 596  GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655

Query: 631  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS---KPTISPISAAAAAAAT 687
             LLAVST DNGIKILA ++G R+L +  N   D+SR    S    P +       ++   
Sbjct: 656  TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715

Query: 688  SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE 747
            S  + +R+  + S+ G+NGD RSL DVKPRI +++ +KSK WKLTE+SE +Q R+LRLP+
Sbjct: 716  SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDA-EKSKTWKLTEISERSQLRTLRLPD 774

Query: 748  NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM 807
             L   ++ +LI+TNSG AILALA NA H LWKWQ++ERN  GKA ++V PQLWQP SG++
Sbjct: 775  TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834

Query: 808  MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 867
            MTND  + N E+ VPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFM PPPAAT LAF
Sbjct: 835  MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894

Query: 868  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927
            HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH KR+TGLAFS+ LNVLVSSGADSQLC
Sbjct: 895  HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954

Query: 928  VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK 987
            VWS DGWEKQ ++ +QIP+G +P   + TRVQFHQDQIH LVVH +QLAI+E  KLE +K
Sbjct: 955  VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014

Query: 988  QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047
            QW+P+ESS  +T A +SCDSQ +YA F D +V + +A  L+L+CRI P++YLP+  SS V
Sbjct: 1015 QWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYLPSNPSSRV 1074

Query: 1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSG 1107
            +P  +AAHP EPN+FA+GL+DGGVHV EP   EGKWG+  P +NG+  S+ + P     G
Sbjct: 1075 YPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENGAGPSVSSAP-----G 1129

Query: 1108 SDQAQR 1113
            SDQ  R
Sbjct: 1130 SDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1385 bits (3584), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 695/1123 (61%), Positives = 843/1123 (75%), Gaps = 62/1123 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P + ++ +   F PLG H GPF
Sbjct: 181  WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLP-VAAVARPSNFVPLGVHGGPF 239

Query: 240  QP--TPAPVPTPLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
            Q    PAP    LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct: 240  QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query: 295  -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTR 353
             DY S D + L KR R    S+E+  P             +HSH  A  + +DLP+ V  
Sbjct: 298  MDYQSADHEQLMKRLRSAQTSNEVTYP-------------AHSHPPA--SLDDLPRNVVS 342

Query: 354  TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
            T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct: 343  TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query: 414  ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
            ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct: 403  SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query: 474  SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
            +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct: 462  AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query: 534  KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------R 567
            KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+                          R
Sbjct: 521  KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580

Query: 568  TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
            TY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFN
Sbjct: 581  TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640

Query: 628  KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT 687
            KDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K + S ++++ + A  
Sbjct: 641  KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700

Query: 688  SAGLADRAASMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746
                 D  +     P  NG +  S    KPR   +S DKSK  +LTE+ +P QCR + +P
Sbjct: 701  KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759

Query: 747  ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805
            ++  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQP SG
Sbjct: 760  DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819

Query: 806  IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 865
            ++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFNMMTFK M TFMPPPPA+TFL
Sbjct: 820  LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878

Query: 866  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
            AFHPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct: 879  AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938

Query: 926  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
            L  W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+EC
Sbjct: 939  LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996

Query: 986  VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1043
            + +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P    
Sbjct: 997  IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056

Query: 1044 -SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1085
             S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV
Sbjct: 1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1338 bits (3463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/1131 (59%), Positives = 828/1131 (73%), Gaps = 67/1131 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFL+EEKFKE+VH+LE+ESGFFFN KYF+++V  G WDDVE YLSGF
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALD+ ++AKAVEILV+DL+VFSTFNEEL+KEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            L+NFRENEQLSKYGDTK+AR IML ELKKLIEANPLFRDKL FP L++SRLRTLINQSLN
Sbjct: 121  LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAH-GPF 239
            WQHQLCKNPRPNPDIKTLF DHTC  PNG  APS  N P+  +L K   +P LG H    
Sbjct: 181  WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFP 239

Query: 240  QPTPAPVPTPLAGWM--SNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDY 296
                A     LA WM  ++  +    AV   A+ +  P    + LK PRTPP  P  VDY
Sbjct: 240  PGPAAANAGALASWMAAASGASAVQAAVVTPAL-MPQPQNQMSILKRPRTPPATPGIVDY 298

Query: 297  PSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN 356
             + D + L KR RP    +E+  P                  QA  + EDLP      L+
Sbjct: 299  QNPDHE-LMKRLRPAPSVEEVTYPA--------------PRQQAPWSLEDLPTKAALALH 343

Query: 357  QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV 416
            QGS+  SM+F+P+Q TLLLVG+  G+I LWE+ +RERLV R FK+WD+  CS   QA + 
Sbjct: 344  QGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 417  KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP 476
            K+  +SV RV WSPDG+  GVA+++H++Q+Y++ G +++RQH EIDAHVG VND+AF++P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 477  NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK 536
            N+QLCVITCGDDK IKVWD + G K + FEGH+APVYS+CPH+KENIQFIFSTA+DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWDVS-GRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 537  AWLYDNLGSRVDYEAPGRWCTTMAYSADGT--------------------------RTYQ 570
            AWLYDNLGSRVDY+APG+WCT M YSADGT                          RTY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 571  GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
             F+K+  GVVQFDT+KN FLA G+D  IKFWDM+++ +LTS DA+GGLPA P +RFNKDG
Sbjct: 583  EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDG 642

Query: 631  CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG 690
             LLAV+T DNG KILA   G R LR  E  A +  RT  + K      +   A  A+   
Sbjct: 643  NLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFK------AVPGAPVASVNC 696

Query: 691  LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL- 749
              +R + +     +NG    +   K RI ++S DK K W+L E+ +P+QC    LP+   
Sbjct: 697  KVERGSPVRHSQMLNG----VDPSKSRI-DDSTDKPKSWQLAEILDPSQCFQATLPDTAG 751

Query: 750  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
             +TK+ +L++TNSG  ILAL SN I  LWKW   E+N SGKATA+V PQ WQP SG++MT
Sbjct: 752  SSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMT 811

Query: 810  NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869
            NDV+  N E A PC ALSKNDSYVMSA+GGK+SLFNMMTFK M TFMPPPPA+TFLAFHP
Sbjct: 812  NDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHP 871

Query: 870  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
            QDNN+IAIGM+DS+I IYNVRVDEVKSKLKGH KRITGLAFS ALN+LVSSGAD+Q+C W
Sbjct: 872  QDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFW 931

Query: 930  SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 989
            S D WEK+K+  +Q+P G+   A  DTRVQFH DQ+  LVVHETQLA+F+ +K+EC++QW
Sbjct: 932  SIDTWEKRKSVAIQMPAGK--AANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQW 989

Query: 990  VPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048
            +P++S SAPI+ A ++C+SQL+Y  F D  + VF A +L+LRCRI+PSAYLP G +  + 
Sbjct: 990  IPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYLPQG-NQGLS 1048

Query: 1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP---VDNGSTSS 1096
            PLV+AAHPQ+PN+FA+GL+DG V + EP E EGKWG+ PP   +++ ST+S
Sbjct: 1049 PLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)

Query: 350  TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 406
            T T+TL   GSS +S+ F P  Q    V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 407  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 466
            C+  L+       G SV  V +SPDG           ++I+    G    Q LE   H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052

Query: 467  GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
             V  + FS P+ Q  V +  DD TIK+WDA +G      EGH   V+SV      + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108

Query: 527  FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 579
             S ++DG IK W   +       E  G W  ++A+S DG R   G    ++ +       
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168

Query: 580  --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 625
                          V F     R  +   D +IK WD  S     +++  GG   S  + 
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226

Query: 626  FNKDGCLLAVSTNDNGIKILATSDG 650
            F+ DG  +A  ++DN IKI  T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 64/531 (12%)

Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            SV  V +SPDG LF    S  IV+ +    G E+   L    H   VN + FS   K L 
Sbjct: 866  SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922

Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
              +  DD+T+++WD ++G     F+GH + V SV      N   + S + D  ++ W   
Sbjct: 923  --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978

Query: 542  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 600
            +      ++    W  ++A++ DG+                       LA G  D +++ 
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016

Query: 601  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 660
            WD+ S Q        G       + F+ DG +LA  ++D  +++   S G   L T +  
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072

Query: 661  AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 716
                  TS       SP  A  A+        L D ++   + ++ G    VR L     
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127

Query: 717  RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 769
             +T  +    ++ +L ++S      +L+   N + A   S     + + SG+  + L   
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187

Query: 770  -ASNAIHLLW---KW-QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEA 820
             +S  +++L     W      N  G   AS +     +LW+  S   +    T       
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSW 1244

Query: 821  VPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879
            V     + + S + S S  K + L+++ + K + TF         +AF+P D +++A G 
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGS 1303

Query: 880  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
             D +++++ +   +     +GH+  ++ + FS    +L S   D  + +WS
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct: 48  SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
           N G           CT M  +     T           V F+      ++   D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199

Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  + QLL +I  + G   S  ++F+ +G  +   T DN +++ + ++  + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)

Query: 454  EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 513
            E+++   ++ H  GV  I+ S   +   + +   DKTIK+W + +G       GHE  VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117

Query: 514  SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 571
            SV      + Q I S   D  IK W                       ++DGT  +T  G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153

Query: 572  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 631
              ++++  V F        +A  D SIK WD  S QLL ++   G       +RF+ DG 
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210

Query: 632  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 691
             +A  + D  +K+    DG +LL+T     +     S +  P    +++A+A        
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Query: 692  ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 730
                  + ++ G N    DV   +D K   +   ++  K+W                   
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327

Query: 731  LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 787
            +  L + N   S  L   +R  +   IS L      + + A++   +H        + + 
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377

Query: 788  SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 846
               A A    QLW    G ++     +    +A+   + +     + SA+  K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433

Query: 847  MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906
               K + T +        + F P D   +A    D++++++NV   + K  LKGH+  + 
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492

Query: 907  GLAFSHALNVLVSSGADSQLCVWSS 931
             ++FS    ++ S+ AD  + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)

Query: 429  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 488
            SP+G L     +   V+++    G  +   L    H   V  + FS P+ ++ + +CG D
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705

Query: 489  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 548
            + +K+W   +G       GHE  V+SV  H   + + + S + D  IK W   +      
Sbjct: 706  ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763

Query: 549  YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 608
                  W   +A+S DG                     N   ++  D +IK WD+   + 
Sbjct: 764  LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802

Query: 609  LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 668
            L ++ +  G   S  + F+ DG  LA  + D  IKI     G   L+T+  + +  S  S
Sbjct: 803  LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857

Query: 669  ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 725
                P    + + +               + ++ G   +V S+A   D +       +  
Sbjct: 858  IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917

Query: 726  SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 784
             ++W         QC    L      T  +  +  +    ILA  SN   + LW WQ  +
Sbjct: 918  VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969

Query: 785  RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 835
              SS +        +   P    + +  TDS+          CF  L ++  +V +    
Sbjct: 970  YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029

Query: 836  ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 886
                  A+G     + L+N+ T + + T          +A+ P D  ++A    D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088

Query: 887  YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 946
            ++         L+GHS R+    FS    ++ +   D  + +     W+ Q+ + L+  T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143

Query: 947  GRT 949
            G T
Sbjct: 1144 GHT 1146

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1113
24461849	1127	CTV.2 [Citrus trifoliata]	0.989	0.976	0.964	0.0
224134436	1172	predicted protein [Populus trichocarpa]	0.996	0.946	0.851	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.992	0.976	0.857	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.992	0.975	0.858	0.0
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	0.993	0.971	0.858	0.0
449517721	1139	PREDICTED: LOW QUALITY PROTEIN: protein	0.995	0.972	0.849	0.0
449468952	1139	PREDICTED: protein TOPLESS-like [Cucumis	0.995	0.972	0.849	0.0
255553317	1115	WD-repeat protein, putative [Ricinus com	0.976	0.974	0.852	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.996	0.976	0.842	0.0
224128504	1153	predicted protein [Populus trichocarpa]	0.999	0.964	0.851	0.0

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 2241 bits (5807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1099/1139 (96%), Positives = 1099/1139 (96%), Gaps = 38/1139 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS        SLN
Sbjct: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNS--------SLN 172

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ
Sbjct: 173  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 232

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD
Sbjct: 233  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 292

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS    QAFS PEDLPKTVTRTLNQGSS
Sbjct: 293  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHS----QAFSAPEDLPKTVTRTLNQGSS 348

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG
Sbjct: 349  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 408

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL
Sbjct: 409  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY
Sbjct: 469  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 529  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFRK 588

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA
Sbjct: 589  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 648

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
            VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR
Sbjct: 649  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 708

Query: 695  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
            AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI
Sbjct: 709  AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 768

Query: 755  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
            SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD
Sbjct: 769  SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 828

Query: 815  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
            SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI
Sbjct: 829  SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 888

Query: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW 934
            IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW SDGW
Sbjct: 889  IAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWGSDGW 948

Query: 935  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 994
            EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES
Sbjct: 949  EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES 1008

Query: 995  SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054
            SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA
Sbjct: 1009 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1068

Query: 1055 HPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            HPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1069 HPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa]

 Score = 2055 bits (5324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1001/1176 (85%), Positives = 1054/1176 (89%), Gaps = 67/1176 (5%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCK PR NPDIKTLF DH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKTPRSNPDIKTLFFDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPA-------------------- 279
            PTPAPVP PLAGWMSNPPTVTHPAVSGG AIGLG+PSI                      
Sbjct: 241  PTPAPVPAPLAGWMSNPPTVTHPAVSGGGAIGLGAPSISGSSFLLFAIDASANHHTEYVS 300

Query: 280  ----------------AALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNV 323
                            AALKHPRTPP+NPSVDYPSGD DH++KRTRP+GISDE+NLPVNV
Sbjct: 301  IHVSLFNNICILLPCVAALKHPRTPPSNPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNV 360

Query: 324  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 383
            LP+SF GH H H   Q F+ P+DLPK V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+I
Sbjct: 361  LPMSFPGHGHGHG--QTFNAPDDLPKAVVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEI 418

Query: 384  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 443
            GLWEVGSRERLVLRNFKVWDL ACSMPLQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHI
Sbjct: 419  GLWEVGSRERLVLRNFKVWDLNACSMPLQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHI 478

Query: 444  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 503
            VQIYSYHG D+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDK IKVWDA  GAKQY
Sbjct: 479  VQIYSYHGNDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKIIKVWDAATGAKQY 538

Query: 504  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
             FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA
Sbjct: 539  TFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 598

Query: 564  DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
            DGTR                          TY GFRK SLGVVQFDTTKNRFLAAGDDFS
Sbjct: 599  DGTRLFSCGTSKDGESYIVEWNESEGAVKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFS 658

Query: 598  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
            IKFWDMDSVQLLT+IDADGGLPASPRIRFNK+G LLAVS NDNGIKILA SDGIRLLRTF
Sbjct: 659  IKFWDMDSVQLLTTIDADGGLPASPRIRFNKEGTLLAVSANDNGIKILANSDGIRLLRTF 718

Query: 658  ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717
            ENL+YDASR SE+  PT++PISAAAAAAATS+GLADR AS+V++ GMNGD R+L DVKPR
Sbjct: 719  ENLSYDASRASES--PTVNPISAAAAAAATSSGLADRGASVVAVAGMNGDARNLGDVKPR 776

Query: 718  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777
            I EE NDKSK+WKLTE++EP+QCRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLL
Sbjct: 777  IAEELNDKSKIWKLTEINEPSQCRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLL 836

Query: 778  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837
            WKWQR++RN+SGKATA V PQLWQP SGI+MTND+TDSNPEEAV CFALSKNDSYVMSAS
Sbjct: 837  WKWQRSDRNASGKATAGVPPQLWQPSSGILMTNDITDSNPEEAVACFALSKNDSYVMSAS 896

Query: 838  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 897
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 897  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 956

Query: 898  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957
            LKGHSKRITGLAFSH L+VLVSSGAD+QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTR
Sbjct: 957  LKGHSKRITGLAFSHVLSVLVSSGADAQLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTR 1016

Query: 958  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017
            VQFHQDQIHFLVVHETQLAIFETTKLECVKQW+PRESSAPI+HA FSCDSQLVYA FLDA
Sbjct: 1017 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWLPRESSAPISHAVFSCDSQLVYASFLDA 1076

Query: 1018 TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077
            TVCVFSAANL+LRCRINPS+Y P  VSSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEPL
Sbjct: 1077 TVCVFSAANLRLRCRINPSSYPPPNVSSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEPL 1136

Query: 1078 ESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            ESEGKWGVPPP +NGS SS+ A P VG SGSDQAQR
Sbjct: 1137 ESEGKWGVPPPAENGSASSVAAIPSVGPSGSDQAQR 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 2027 bits (5252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 977/1140 (85%), Positives = 1050/1140 (92%), Gaps = 35/1140 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPLAGWMSNP TV HPAVSGGAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDH+SKRTRPIG+SDE+NLPVNVL  +F GH H     QAF+ P+DLPKT  R+LNQGSS
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHG----QAFNAPDDLPKTAMRSLNQGSS 355

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 356  PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 415

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGD+V QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 416  VSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQL 475

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDA  GAKQY FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 476  CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 535

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 536  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIVEWNESEGAVKRTYQGFRK 595

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLGVVQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLPASPRIRFNKDG LLA
Sbjct: 596  RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKDGALLA 655

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLAD 693
            VS N+NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA ++A LA+
Sbjct: 656  VSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKPTINPISAAAAAATSAA-LAE 714

Query: 694  RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
            RA+S+V+I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R  K
Sbjct: 715  RASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 774

Query: 754  ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
            ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+GKATASV PQLWQP SGI+MTND+T
Sbjct: 775  ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATASVQPQLWQPSSGILMTNDIT 834

Query: 814  DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
            D+N E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNN
Sbjct: 835  DNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNN 894

Query: 874  IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933
            IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 895  IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 954

Query: 934  WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 993
            WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 955  WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1014

Query: 994  SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA 1053
            SSAPI+HATFSCDSQL+YA FLDATVCV S +NL+LRCRINPSAYL A VSSNV PLVIA
Sbjct: 1015 SSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRINPSAYLSASVSSNVQPLVIA 1074

Query: 1054 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            AHPQEPN+FA+GLSDGGVHVFEP ESEGKWGVPPP++NGSTS+M AT    G+ SD+AQR
Sbjct: 1075 AHPQEPNQFAVGLSDGGVHVFEPHESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQR 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 2019 bits (5230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 980/1141 (85%), Positives = 1054/1141 (92%), Gaps = 36/1141 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLG+LPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PTPAPVPTPLAGWMSNP TV H AVSGG AIGLG+PS+PAA LKHPRTPPTNPSVDYPSG
Sbjct: 241  PTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAA-LKHPRTPPTNPSVDYPSG 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KRTRP+GISDE+NLPVNVL  +F GH     HSQAF+ P+D+PKTV RTLNQGS
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGS 356

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP+QQ+LLLVGT+VGDI LWEVGSRERLV RNFKVWDL ACSMP QAALVKDP
Sbjct: 357  SPMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDLSACSMPFQAALVKDP 416

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQ
Sbjct: 417  GVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQ 476

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA +GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 477  LCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 537  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFR 596

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 597  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 656

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 692
            AVS N+NGIKILA  DGIRLLRT EN  Y+ASR SE  +KPTI+PISAAAAAA ++A LA
Sbjct: 657  AVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTINPISAAAAAATSAA-LA 715

Query: 693  DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752
            +RA+S+V+I GMNGD R+L DVKPRI+EESNDKSK+WKLTE++E +QCRSL+LPEN+R T
Sbjct: 716  ERASSVVAIAGMNGDTRNLGDVKPRISEESNDKSKIWKLTEINEQSQCRSLKLPENVRVT 775

Query: 753  KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812
            KISRLI+TNSGNAILALASNAIHLLWKWQR ERNSSGKATA++ PQLWQP SGI+MTND+
Sbjct: 776  KISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKATATLQPQLWQPSSGILMTNDI 835

Query: 813  TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
             DSNPE+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 836  ADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 895

Query: 873  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932
            NIIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++D
Sbjct: 896  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTD 955

Query: 933  GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 992
            GWEKQK+RFLQ+P GRTP AQSDTRVQFHQDQI FLVVHETQLAI+E TKLE +KQW PR
Sbjct: 956  GWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVVHETQLAIYEATKLEGLKQWFPR 1015

Query: 993  ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052
            +SSAPI++ATFSCDSQLV+A FLDAT+CVFSA+NL+LRCRINPS+YLPA VSSN+ PLVI
Sbjct: 1016 DSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLRCRINPSSYLPASVSSNIQPLVI 1075

Query: 1053 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1112
            AAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP++NGS S++ AT  VG   SDQAQ
Sbjct: 1076 AAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPIENGSASNVAAT-SVG--PSDQAQ 1132

Query: 1113 R 1113
            R
Sbjct: 1133 R 1133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score = 2018 bits (5228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 983/1145 (85%), Positives = 1052/1145 (91%), Gaps = 39/1145 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAVEILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            PTPAPVPTPL  WMSNP TVTHPAVSGG IGLG+PSIPAA LKHPRTPPTNPSVDYPSGD
Sbjct: 241  PTPAPVPTPL--WMSNPSTVTHPAVSGGPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGD 297

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            S+H++KR RP+GISDE+NLPVNVLPV+F GH HS    QAF+ P+DLPKT+ R L QGSS
Sbjct: 298  SEHVAKRGRPMGISDEVNLPVNVLPVTFPGHGHS----QAFNAPDDLPKTLVRNLTQGSS 353

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDIGLWEVGS+++LV RNFKVWD+GACS+PLQAAL KDPG
Sbjct: 354  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSKQKLVSRNFKVWDIGACSVPLQAALAKDPG 413

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSVNR+IWSPDGSLFGVAYSRHIVQIYSYHGGD+VRQHLEIDAH GGVND+AFSHPNKQL
Sbjct: 414  VSVNRIIWSPDGSLFGVAYSRHIVQIYSYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQL 473

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDATNG KQY FEGHE  VYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 474  CVITCGDDKTIKVWDATNGTKQYTFEGHEDAVYSVCPHYKENIQFIFSTALDGKIKAWLY 533

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDY+APGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 534  DNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRK 593

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGC 631
            RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLT +DA+GGLP   ASPRIRFNKDG 
Sbjct: 594  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTILDAEGGLPGLPASPRIRFNKDGT 653

Query: 632  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSA- 689
            LLAVS N+N IKILA SDG+RLLRTF+NL+YDASR SE+ +KP I+ ISAAAAAAA ++ 
Sbjct: 654  LLAVSANENSIKILANSDGLRLLRTFDNLSYDASRASESVTKPAINSISAAAAAAAATSA 713

Query: 690  GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749
            GLADR AS+V+I GMNGD R++ DVKPR+ EE+NDKSK+WKLTE++E +QCRSLRL ENL
Sbjct: 714  GLADRGASVVAIAGMNGDARNMGDVKPRLAEETNDKSKIWKLTEINETSQCRSLRLQENL 773

Query: 750  RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
            R TKISRLI+TNSGNAILALASNAIH LWKWQR +RNSSGKATA+V+PQLWQP SGI+MT
Sbjct: 774  RITKISRLIYTNSGNAILALASNAIHFLWKWQRNDRNSSGKATATVSPQLWQPTSGILMT 833

Query: 810  NDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHP 869
            NDV D+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHP
Sbjct: 834  NDVADTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHP 893

Query: 870  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
            QDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW
Sbjct: 894  QDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVW 953

Query: 930  SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQW 989
            SSDGWEKQK+RFLQ+P GRT T QSDTRVQFHQDQ HFLVVHETQLAI+E TKL+CVKQW
Sbjct: 954  SSDGWEKQKSRFLQVPAGRTSTGQSDTRVQFHQDQTHFLVVHETQLAIYEATKLDCVKQW 1013

Query: 990  VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVH 1048
            V RE++API+HATFSCDS LVYA FLDATVCVFSAANL+LRCRINP+AYLPA VS SNVH
Sbjct: 1014 VQREAAAPISHATFSCDSLLVYASFLDATVCVFSAANLRLRCRINPTAYLPASVSNSNVH 1073

Query: 1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGS 1108
            PLVIAAHPQEPN+FALGLSDGGV VFEPLESEGKWGVPPPV+NGS SS+PATP VG SGS
Sbjct: 1074 PLVIAAHPQEPNQFALGLSDGGVCVFEPLESEGKWGVPPPVENGSASSVPATPSVGPSGS 1133

Query: 1109 DQAQR 1113
            DQ QR
Sbjct: 1134 DQPQR 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus]

 Score = 2011 bits (5210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1144 (84%), Positives = 1052/1144 (91%), Gaps = 36/1144 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFXTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QTFNAPDDLPKTVMRTLNQGS 355

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            +PMSMDFHP+QQTLLLVGTNVG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTNVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 692
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA +A  +
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 693  --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750
              DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 751  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 811  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 931  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 991  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVHP 1049
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS ++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1050 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1109
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1110 QAQR 1113
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus]

 Score = 2011 bits (5210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1144 (84%), Positives = 1053/1144 (92%), Gaps = 36/1144 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP+LKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPHLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPK G FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PT APVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSV+YPS 
Sbjct: 241  PTAAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSA 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH+SKR +P+G+SDE+NLPVNVLPVSFTGH H+    Q F+ P+DLPKTV RTLNQGS
Sbjct: 300  DSDHVSKRPKPMGMSDEVNLPVNVLPVSFTGHGHA----QNFNAPDDLPKTVMRTLNQGS 355

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            +PMSMDFHP+QQTLLLVGT+VG+IGLWEVGSRERLV +NFKVWDL ACSMPLQAALVK+P
Sbjct: 356  NPMSMDFHPIQQTLLLVGTDVGEIGLWEVGSRERLVSKNFKVWDLNACSMPLQAALVKEP 415

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
             VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQ
Sbjct: 416  DVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQ 475

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA NGA+QYIFEGHEAPV+SVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 476  LCVITCGDDKTIKVWDAGNGARQYIFEGHEAPVFSVCPHYKENIQFIFSTALDGKIKAWL 535

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDN+GSRVDY+APGRWCTTMAYSADGTR                          TYQGFR
Sbjct: 536  YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFR 595

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD+VQLLT++DADGGLPASPRIRFNKDG LL
Sbjct: 596  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADGGLPASPRIRFNKDGTLL 655

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLA 692
            AVS N+NGIKILA  DGIRLLRTFENL+YDA+RTSE  +KPTI+PISAAAA AA +A  +
Sbjct: 656  AVSGNENGIKILANVDGIRLLRTFENLSYDAARTSEAGTKPTINPISAAAAVAAAAAAGS 715

Query: 693  --DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR 750
              DR AS+V++ G+ GD RSL DVKPRI E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R
Sbjct: 716  AADRGASVVTMSGVAGDSRSLGDVKPRIPEDSNDKSKIWKLTEINEPSQCRSLRLPENVR 775

Query: 751  ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN 810
              KISRLI+TNSG+AILALASNAIHLLWKW R+ERNS+GKATA+V PQLWQP SGI+MTN
Sbjct: 776  VNKISRLIYTNSGSAILALASNAIHLLWKWTRSERNSTGKATANVLPQLWQPSSGILMTN 835

Query: 811  DVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ 870
            DV D++ EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQ
Sbjct: 836  DVADTSSEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQ 895

Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            DNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWS
Sbjct: 896  DNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHLLNVLVSSGADAQLCVWS 955

Query: 931  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
            SD WEKQK RFLQ+P+GR P++QSDTRVQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW 
Sbjct: 956  SDVWEKQKTRFLQLPSGRPPSSQSDTRVQFHQDQVHFLVVHETQIAIYETTKLECVKQWT 1015

Query: 991  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVHP 1049
            PRES API+HATFSCDSQ++YA FLDATVCVF+ A+L+LRCRI+PSAYLPA VS ++V P
Sbjct: 1016 PRESGAPISHATFSCDSQMIYASFLDATVCVFTVASLRLRCRISPSAYLPASVSNASVQP 1075

Query: 1050 LVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSD 1109
            LVIAAHPQE N+FALGLSDGGVHVFEPLESEGKWGVPPPV+NGS SS+P TP VG SGS+
Sbjct: 1076 LVIAAHPQEANQFALGLSDGGVHVFEPLESEGKWGVPPPVENGSASSVPTTPSVGASGSE 1135

Query: 1110 QAQR 1113
            QA R
Sbjct: 1136 QAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis]

 Score = 2004 bits (5192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 973/1141 (85%), Positives = 1034/1141 (90%), Gaps = 54/1141 (4%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+KAV+ILVKDLKVF+TFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVDILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IML                  FPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIML------------------FPNLKNSRLRTLINQSLN 162

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 163  WQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 222

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            PTPAPVP PLAGWMSNP  VTHPAVSGG AIGLG+PSIPAA LKHPRTPPTNPSVDYPSG
Sbjct: 223  PTPAPVPAPLAGWMSNPSAVTHPAVSGGGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSG 281

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KRTRP+GISDE+NLPVNVLPVSF GH H     Q F+ P+DLPKTV+RTLNQGS
Sbjct: 282  DSDHVAKRTRPMGISDEVNLPVNVLPVSFPGHGHG----QNFNAPDDLPKTVSRTLNQGS 337

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP++QTLLLVGTNVGD+ LWEVGSRERL+LRNFKVWD+  CSMPLQAALVKDP
Sbjct: 338  SPMSMDFHPLEQTLLLVGTNVGDVALWEVGSRERLMLRNFKVWDISTCSMPLQAALVKDP 397

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH GD+VRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 398  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQ 457

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA  G +QY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWL
Sbjct: 458  LCVITCGDDKTIKVWDAATGTRQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 517

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          +YQGFR
Sbjct: 518  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESHIVEWNESEGNVKRSYQGFR 577

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD++QLLTSIDADGGLPASPRIRFNKDG LL
Sbjct: 578  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNLQLLTSIDADGGLPASPRIRFNKDGSLL 637

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAATSAGLA 692
            AVS N+NGIKILA SDG RLLRTFENL+YDASR SE  +KP I+PISAAAA +A  A   
Sbjct: 638  AVSANENGIKILANSDGHRLLRTFENLSYDASRASEAVTKPIINPISAAAATSAGLA--- 694

Query: 693  DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT 752
            DR AS+V+IPGMNGD R++ DVKPRITEESNDKSK+WKLTE++EP QCRSLRLP+NLR  
Sbjct: 695  DRTASVVTIPGMNGDARNMGDVKPRITEESNDKSKIWKLTEINEPTQCRSLRLPDNLRVN 754

Query: 753  KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV 812
            KISRLI+TNSGNAILALASNAIHLLWKWQR+ERNS+GKATA+V+PQLWQP SGI+MTND+
Sbjct: 755  KISRLIYTNSGNAILALASNAIHLLWKWQRSERNSTGKATANVSPQLWQPSSGILMTNDI 814

Query: 813  TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
            TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDN
Sbjct: 815  TDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDN 874

Query: 873  NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD 932
            NIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LNVLVSSGAD+QLCVW+SD
Sbjct: 875  NIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWNSD 934

Query: 933  GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPR 992
            GWEKQK RFLQ+P GRT T QSDTRVQFHQDQI FLVVHETQLAI+E TKLEC KQWV R
Sbjct: 935  GWEKQKTRFLQVPPGRTTTGQSDTRVQFHQDQIQFLVVHETQLAIYEATKLECTKQWVTR 994

Query: 993  ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052
            ESSAPI+HATFSCDSQLVYA FLDATVCVFSA NL+LRCRINPS+YL A VSS++HPLVI
Sbjct: 995  ESSAPISHATFSCDSQLVYASFLDATVCVFSAQNLRLRCRINPSSYLSANVSSSLHPLVI 1054

Query: 1053 AAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQ 1112
            AAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PATP VG SGSDQAQ
Sbjct: 1055 AAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPATPSVGPSGSDQAQ 1114

Query: 1113 R 1113
            R
Sbjct: 1115 R 1115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1983 bits (5138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 961/1140 (84%), Positives = 1036/1140 (90%), Gaps = 31/1140 (2%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFE+ KQKYLEALDKHDR+KAVEILVKDLKVF+TFN+ELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKY DTKSAR+IMLVELKKLIEANPLF DKLQFPNLK+SRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYCDTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPRPNPDIKTLFVDH+CGQ NGA APSPANN LLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
            P+PAPVPTPLAGWMSNP TV HP VSGGAIGLG PSIPAA LKHPRTPPT PSVDYPSGD
Sbjct: 241  PSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAA-LKHPRTPPTYPSVDYPSGD 299

Query: 301  SDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSS 360
            SDH+SKRTRP+G+SDE+NLPVNVL  +F GH H H H QAF+ P+DLPKT  RTLNQGSS
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATFPGHGHGHGHGQAFNAPDDLPKTAMRTLNQGSS 359

Query: 361  PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            PMSMDFHPVQQTLLLVGTNVGDI LWEVGSRERL++RNFKVWDL ACSMP QAALVKDPG
Sbjct: 360  PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMPFQAALVKDPG 419

Query: 421  VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            VSV RVIWSPDG+LFGVAYSRHIVQIYSYH GD+V+QHLEIDAHVGGVND+AFSHPNKQL
Sbjct: 420  VSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQL 479

Query: 481  CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            CVITCGDDKTIKVWDA  GAKQY FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct: 480  CVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 539

Query: 541  DNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFRK 574
            DNLGSRVDYEAPGRWCTTMAYSADGTR                          TYQGFRK
Sbjct: 540  DNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGAVKRTYQGFRK 599

Query: 575  RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA 634
            RSLG VQFDTTKNR+LAAGDDFSIKFWDMD++QLLT++DADGGLP SPRIRFNKDG LLA
Sbjct: 600  RSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSPRIRFNKDGALLA 659

Query: 635  VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE-NSKPTISPISAAAAAAATSAGLAD 693
            VS  +NGIKILA +DGIRLLRT EN  YD SRTSE  +KPTI+PISAAAAAA ++A L +
Sbjct: 660  VSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAAAAAATSAA-LGE 718

Query: 694  RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
            RA S+V I  MNGD R+L DVKPRI+EESNDKSK+WKLTE++EP+QCRSL+LPEN+R  K
Sbjct: 719  RALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRSLKLPENVRVNK 778

Query: 754  ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
            ISRLI+TNSGNAILALASNAIHLLWKWQR +RNS+ KA+ASV PQLWQP SGI+MTND+T
Sbjct: 779  ISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQPSSGILMTNDIT 838

Query: 814  DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
            DSN E+AVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAA FLAFHPQDNN
Sbjct: 839  DSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNN 898

Query: 874  IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG 933
            IIAIGMDDSSIQIYNVRVDEVKSKLKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DG
Sbjct: 899  IIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDG 958

Query: 934  WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE 993
            WEKQK+RFLQ+P GRTP AQ+DTRVQFHQDQI FLVVHETQLAI+E TKLEC+KQW PR+
Sbjct: 959  WEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEATKLECLKQWFPRD 1018

Query: 994  SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA 1053
            SSAPI+HATFSCDSQL+YA FLDATVCVFS +NL+L+CRINPSAYL A VSSNV PLVIA
Sbjct: 1019 SSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSASVSSNVQPLVIA 1078

Query: 1054 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
            AHPQEPN+FA+GLSDGGVHVFEPLESEGKWGVPPP++NGSTS+M AT    G+ SD+AQR
Sbjct: 1079 AHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPIENGSTSNMAATSV--GASSDEAQR 1136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128504|ref|XP_002329020.1| predicted protein [Populus trichocarpa] gi|222839691|gb|EEE78014.1| predicted protein [Populus trichocarpa]

 Score = 1981 bits (5133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 983/1154 (85%), Positives = 1037/1154 (89%), Gaps = 42/1154 (3%)

Query: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
            MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
            TKVDDNRYSMKIFFEIRKQKYLEALDKHDR+ AVEILVKDLKVFSTFNEELFKEITQLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSMAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
            LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN
Sbjct: 121  LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180

Query: 181  WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ 240
            WQHQLCKNPR NPDIKTLFVDH+CGQPNGARAPSPANNPLLGSLPKAG FPPLGAHGPFQ
Sbjct: 181  WQHQLCKNPRSNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQ 240

Query: 241  PTPAPVPTPLAGWMSNPPTVTHPAVSGG-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 299
            P PAPVP PLAGWMS P TVTH AVSGG AIGLG+PSIPAA LKHPRTPPTN SVDYPSG
Sbjct: 241  PAPAPVPAPLAGWMSTPSTVTHSAVSGGGAIGLGAPSIPAA-LKHPRTPPTNLSVDYPSG 299

Query: 300  DSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGS 359
            DSDH++KR RP+GISDE+NLPVNVLPVSF GH H H H QAF+ P+DLPK V RTLNQGS
Sbjct: 300  DSDHVAKRVRPMGISDEVNLPVNVLPVSFPGHGHGHGHGQAFNAPDDLPKVVARTLNQGS 359

Query: 360  SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
            SPMSMDFHP+Q TLLLVGTNVGDIGLWEVGSRERLVLR FKVWDL ACSMPLQAAL KDP
Sbjct: 360  SPMSMDFHPLQLTLLLVGTNVGDIGLWEVGSRERLVLRIFKVWDLNACSMPLQAALAKDP 419

Query: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
            GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG DEVRQHLEIDAHVGGVND+AFS PNKQ
Sbjct: 420  GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGNDEVRQHLEIDAHVGGVNDLAFSTPNKQ 479

Query: 480  LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
            LCVITCGDDKTIKVWDA+ GAK Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWL
Sbjct: 480  LCVITCGDDKTIKVWDASTGAKLYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 539

Query: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTR--------------------------TYQGFR 573
            YDNLGSRVDYEAPGRWCTTMAYSADGTR                          TY GFR
Sbjct: 540  YDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGDSFIVEWNESEGAVKRTYLGFR 599

Query: 574  KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL 633
            K+S GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT+IDADGGLPASPRIRFNKDG LL
Sbjct: 600  KQSWGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASPRIRFNKDGTLL 659

Query: 634  AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPISAAAAAAA------ 686
            AVS NDNGIKILA +DGIRLLRTFENL++DASRTSE+ +K T+S    A A         
Sbjct: 660  AVSANDNGIKILANTDGIRLLRTFENLSFDASRTSESIAKVTLSASVVAIAGMVRWTCLF 719

Query: 687  --TSAGLADRAASMVSIPGM-----NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 739
              +S  +   +   ++ P +     NGD R+L DVKPR+TEESNDKSK+WKLTE++EP+Q
Sbjct: 720  IYSSIRILCSSNLHINYPSITQLIINGDARNLGDVKPRLTEESNDKSKIWKLTEINEPSQ 779

Query: 740  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 799
            CRSLRLPENLR TKISRLI+TNSGNAILALASNAIHLLWKWQR++RN+SGKATA V+PQL
Sbjct: 780  CRSLRLPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNASGKATAGVSPQL 839

Query: 800  WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 859
            WQP SGI+MTND TD+NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPP
Sbjct: 840  WQPSSGILMTNDSTDTNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPP 899

Query: 860  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 919
            PAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH LN+LVS
Sbjct: 900  PAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLNMLVS 959

Query: 920  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979
            SGAD+QLCVW+SDGWEKQK RFLQ+P GRTPTAQSDTRVQFHQDQIHFLVVHETQLAI+E
Sbjct: 960  SGADAQLCVWNSDGWEKQKARFLQVPAGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIYE 1019

Query: 980  TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039
            TTKLECVKQWV RESSAPI+HA FSCDS LVYA FLDATVCVFSA NL+LRCRINP  YL
Sbjct: 1020 TTKLECVKQWVLRESSAPISHAVFSCDSHLVYASFLDATVCVFSAMNLRLRCRINPCTYL 1079

Query: 1040 PAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPA 1099
               VSSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+PA
Sbjct: 1080 SPNVSSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVPA 1139

Query: 1100 TPPVGGSGSDQAQR 1113
            TP VG SGSDQAQR
Sbjct: 1140 TPSVGPSGSDQAQR 1153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1113
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.986	0.980	0.734	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.953	0.938	0.592	0.0
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.508	0.500	0.854	0.0
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.323	0.486	0.368	2.3e-91
DICTYBASE|DDB_G0278353	530	smu1 "suppressor of mec-8 and	0.141	0.298	0.305	4.7e-16
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.142	0.474	0.282	2.6e-12
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.170	0.322	0.246	1.2e-10
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.167	0.355	0.253	2.3e-10
FB|FBgn0036354	391	Poc1 "Proteome of centrioles 1	0.067	0.191	0.307	3.4e-10
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.193	0.495	0.273	6.1e-10

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 4247 (1500.1 bits), Expect = 0., P = 0.
 Identities = 834/1135 (73%), Positives = 926/1135 (81%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD+HDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+ SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+C  PN ARAPSP NNPLLGSLPKA  FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
                      LAGWMS+P +V HPAVSGG I LG+PSI AA LKHPRTPP+N +VDYPSGD
Sbjct:   241 PTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGD 299

Query:   301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
             SDH+SKRTRP+GISDE++L VN+LP++F G        Q F  P+DLPKTV RTL+QGSS
Sbjct:   300 SDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHN--QTFKAPDDLPKTVARTLSQGSS 357

Query:   361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDIAFS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQL 477

Query:   481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
             CV TCGDDKTIKVWDA  G K+Y FEGHEAPVYS+CPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWLY 537

Query:   541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQ-GFRKRSLG-VVQFDTTKNRFLAAGDDF-- 596
             DN+GSRVDYEAPGRWCTTMAYSADGTR +  G  K     +V+++ ++         F  
Sbjct:   538 DNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHK 597

Query:   597 -SIKFWDMDSVQ---LLTSIDADGGLPASPRIRF----NKDGCLLA---VSTNDNGIKIL 645
              S+     D+ +   L    D          I+     + DG L A   +  N  G  +L
Sbjct:   598 RSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEG-SLL 656

Query:   646 ATSDGIRLLRTFEN-----LAYDASR-TSENSKPTISPIXXXXXXXXXXXXXXXXXXXMV 699
             A S    +++   N     L +     +SE+SKP I+ I                   +V
Sbjct:   657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPAS-----------VV 705

Query:   700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 759
             SIPGMNGD R++ DVKP ITEESNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIF
Sbjct:   706 SIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIF 765

Query:   760 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE 819
             TNSGNAILALASNAIHLLWKWQR +RN++GKATAS+ PQ WQP SGI+MTNDV ++NPEE
Sbjct:   766 TNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEE 825

Query:   820 AVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGM 879
             AVPCFALSKNDSYVMSASGGKISLFN                      HPQDNNIIAIGM
Sbjct:   826 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 885

Query:   880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939
             DDS+IQIYNVRVDEVKSKLKGHSKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK+
Sbjct:   886 DDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKS 945

Query:   940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPIT 999
             + LQIP GR+ ++ SDTRVQFHQDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES+APIT
Sbjct:   946 KVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPIT 1005

Query:  1000 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS-SNVHPLVIAAHPQE 1058
             HATFSCDSQL+Y  F+DAT+CVFS+ANL+LRCR+NPSAYLPA +S SNVHPLVIAAHPQE
Sbjct:  1006 HATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQE 1065

Query:  1059 PNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1113
              N FA+GLSDGGVH+FEPLESEGKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct:  1066 SNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 3328 (1176.6 bits), Expect = 0., P = 0.
 Identities = 665/1123 (59%), Positives = 808/1123 (71%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKE+VHKLEQESGFFFN+KYFE++   G WD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLF+DH+C   NGARA +P N P+  ++ +   F PLG HG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPF 239

Query:   241 XXXXX---XXXXLAGWMSNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV 294
                         LAGWM+NP P+ + P  SG       P  P+    LKHPR P  +  +
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGL 297

Query:   295 -DYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTR 353
              DY S D + L KR R    S+E+  P +  P +               + +DLP+ V  
Sbjct:   298 MDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPA---------------SLDDLPRNVVS 342

Query:   354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA 413
             T+ QGS  +SMDFHP   TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q 
Sbjct:   343 TIRQGSVVISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQG 402

Query:   414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF 473
             ++VK+P +SV RV WSPDG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF
Sbjct:   403 SIVKEPSISVTRVAWSPDGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAF 461

Query:   474 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG 533
             +HPNKQ+CV+TCGDDK IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDG
Sbjct:   462 AHPNKQMCVVTCGDDKLIKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDG 520

Query:   534 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-------------------------- 567
             KIKAWLYDN+GSRVDY+APG+WCTTM YSADG+R                          
Sbjct:   521 KIKAWLYDNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKR 580

Query:   568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
             TY GFRK+S GVVQFDTT+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFN
Sbjct:   581 TYLGFRKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFN 640

Query:   628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXX 687
             KDG LLAV+T DNG KILA +DG+R LR FE  +++AS+ S + K + S +         
Sbjct:   641 KDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIG 700

Query:   688 XXXXXXXXXXMVSIPGMNG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP 746
                           P  NG +  S    KPR   +S DKSK  +LTE+ +P QCR + +P
Sbjct:   701 KIEHMDAGSPARPTPIPNGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMP 759

Query:   747 ENLRA-TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG 805
             ++  + +K++RL++TNSG  +LAL SN +  LWKW R E+N +GKATASV PQ WQP SG
Sbjct:   760 DSKDSVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG 819

Query:   806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXX 865
             ++M NDV + NPE +VPC ALSKNDSYVMSA GGK+SLFN                    
Sbjct:   820 LLMANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFL 878

Query:   866 XXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
               HPQDNNIIAIGM+DSSI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+Q
Sbjct:   879 AFHPQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQ 938

Query:   926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
             L  W++D WEK+K+  +Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+EC
Sbjct:   939 LFFWTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMEC 996

Query:   986 VKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV- 1043
             + +WVP+E+ S+PIT A++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P    
Sbjct:   997 IHKWVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTP 1056

Query:  1044 -SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1085
              S+ + P VI AHPQEPN+ A+GLSDG V V EP E   +WGV
Sbjct:  1057 NSAPIFPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2597 (919.2 bits), Expect = 0., Sum P(2) = 0.
 Identities = 486/569 (85%), Positives = 519/569 (91%)

Query:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60
             MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGF
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             TKVDDNRYSMKIFFEIRKQKYLEALDKHDR KAV+ILVKDLKVFSTFNEELFKEITQLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query:   121 LENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLN 180
             LENFRENEQLSKYGDTKSAR+IMLVELKKLIEANPLFRDKLQFP L+NSRLRTLINQSLN
Sbjct:   121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180

Query:   181 WQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXX 240
             WQHQLCKNPRPNPDIKTLFVDH+CG PNGARAPSP NNPLLG +PKAG FPPLGAHG   
Sbjct:   181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240

Query:   241 XXXXXXXXXLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGD 300
                      LAGWMS+P +V HPAVS GAI LG PSIPAA LKHPRTPPTN S+DYPS D
Sbjct:   241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYPSAD 299

Query:   301 SDHLSKRTRPIGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSS 360
             S+H+SKRTRP+GISDE+NL VN+LP+SF+G         AF  P+DLPKTV RTL+QGSS
Sbjct:   300 SEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHS--PAFKAPDDLPKTVARTLSQGSS 357

Query:   361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
             PMSMDFHP++QTLLLVGTNVGDIGLWEVGSRERLV + FKVWDL  CSMPLQAALVK+P 
Sbjct:   358 PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEPV 417

Query:   421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             VSVNRVIWSPDGSLFGVAYSRHIVQ+YSYHGG+++RQHLEIDAHVGGVNDI+FS PNKQL
Sbjct:   418 VSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQL 477

Query:   481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
             CVITCGDDKTIKVWDA  G K++ FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLY
Sbjct:   478 CVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLY 537

Query:   541 DNLGSRVDYEAPGRWCTTMAYSADGTRTY 569
             DN+GSRVDY+APGRWCTTMAYSADGTR +
Sbjct:   538 DNMGSRVDYDAPGRWCTTMAYSADGTRLF 566

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 2.3e-91, Sum P(2) = 2.3e-91
 Identities = 138/374 (36%), Positives = 206/374 (55%)

Query:   730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 789
             K  E+ +P+QC +L LP+     KI+RL ++ SG+ ILALA +A H LW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 849
             K      P+L QP SG  M N++  S  +++  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   850 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909
                                P D  ++A+G+DD SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   910 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 966
             FS   NVLVSS +D +LC+WS+  W K   KN   +        + S  T +QF   QI 
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   967 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026
              LVVH+  + ++E   L+C  QW+P  S   IT AT+S D +++Y  F   ++ +  +  
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661

Query:  1027 LKLRCRINPSAYLP---AGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083
                 C+IN +++     + +S  V+P V+AAHP  PN+ + GLS+G V V +PL S G W
Sbjct:   662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720

Query:  1084 GVPPPV-DNGSTSS 1096
             G   P+ DNG  S+
Sbjct:   721 GEAAPLEDNGDYSN 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0278353 smu1 "suppressor of mec-8 and unc-52-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 4.7e-16, Sum P(3) = 4.7e-16
 Identities = 58/190 (30%), Positives = 90/190 (47%)

Query:     5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM----KYFEDEVHNGNWDDVEKYLSGF 60
             S++++ LILQFL E     ++  L++E+G   N     + F ++V NGNWD V       
Sbjct:    16 SQDVIKLILQFLKENSLGNSLTALQEETGINLNAVDSKETFLNDVKNGNWDSV------L 69

Query:    61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120
             T V   R S  +  ++ +Q  +E L  H   K  E+    ++     N     +  + L 
Sbjct:    70 TVVSTLRLSTTLLMDLYEQ-IVELL--H--LKEYELCKYLIRKTEPLNYMKLNQQERYLK 124

Query:   121 LENFRENEQLS-----KYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLI 175
             LEN  + E +      KYG T   R       K+LIE   L  + +  P+   SRL +L+
Sbjct:   125 LENHLQREYIDLGDFYKYGITTEKRR------KQLIEQ--LNNEIITVPS---SRLLSLL 173

Query:   176 NQSLNWQ-HQ 184
             +QSL+WQ HQ
Sbjct:   174 SQSLHWQKHQ 183

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 48/170 (28%), Positives = 83/170 (48%)

Query:   422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
             S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct:    48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query:   482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
               +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct:   105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query:   542 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 590
             N G       A     T + ++ DGT    G    ++ +  +DTT  + L
Sbjct:   160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.2e-10, Sum P(4) = 1.2e-10
 Identities = 50/203 (24%), Positives = 90/203 (44%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKV 63
             E V +I + L    + +T   LE+ESG   +   +K F  +V +G WD   K L      
Sbjct:    67 EFVRIITRALYSLGYDKTGAMLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFP 126

Query:    64 DDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLEN 123
             D+       F  + +QK+LE L     A A+  L  ++       + + +  + L++  +
Sbjct:   127 DEKAVKAASFL-LLEQKFLEFLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSS 185

Query:   124 FRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQH 183
             F  +   +   ++ ++RS +L EL+ L+ A+ +  +K         RL  L+  SL+ Q 
Sbjct:   186 FISHTTSTPGKESVNSRSKVLEELQTLLPASVIIPEK---------RLECLVENSLHIQR 236

Query:   184 QLCKNPRPNPDIKTLFVDHTCGQ 206
               C          +L+ DH CG+
Sbjct:   237 DSCVFHNTLDSDLSLYSDHQCGK 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 2.3e-10, Sum P(3) = 2.3e-10
 Identities = 52/205 (25%), Positives = 90/205 (43%)

Query:     7 ELVFLILQFLDEEKFKETVHKLEQESGFFF---NMKYFEDEVHNGNWDDVEKYLSGF--T 61
             E + +++Q L    FK +   LE ES   +   + ++ E +V +GNWD   + L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTL 121
              +DD R +    + + KQ  LE L + D + A+ +L K   +     E++ +    ++  
Sbjct:    79 SMDDTRNTA--LYLVFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 ENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNW 181
             +     E  +        R  +LVEL+KLI   PL    +  P     RL  L+  ++  
Sbjct:   137 KEMESGEVDNCL--VLDLRRKLLVELEKLI---PL---PIVIPE---RRLEHLVETAVMD 185

Query:   182 QHQLCKNPRPNPDIKTLFVDHTCGQ 206
             Q   C     + D  +L+ DH CG+
Sbjct:   186 QIDTCMYHN-SCDAVSLYKDHCCGR 209

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 3.4e-10, Sum P(3) = 3.4e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query:   580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
             V FD+T +  L A DD S K W +   Q ++S         S +  F+ +G L+A +++D
Sbjct:   108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165

Query:   640 NGIKILATSDGIRLLRTF 657
               ++I     G   +RTF
Sbjct:   166 KSVRIYDVDSG-ECVRTF 182

GO:0051297 "centrosome organization" evidence=IMP

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 143 (55.4 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
 Identities = 66/241 (27%), Positives = 116/241 (48%)

Query:   423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
             +  V +SPDG L     +   ++++    G  ++Q LE   H   V  +AFS PN QL +
Sbjct:    44 IETVTFSPDGRLLASGSNDTTIKLWDPASGG-LKQTLE--GHSSSVQSVAFS-PNGQL-L 98

Query:   483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL--Y 540
              +   D TIK+W++ + + ++  EGH   V SV      N Q +++ A+ G +K  +  +
Sbjct:    99 ASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVA--FSPNGQ-LWNPAI-GSLKHTIEGH 154

Query:   541 DNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGFR---KRSLG-----VVQFDTTKN-RFL 590
              +    V +   G+   +   SA+ T + +       K +LG     V+    + + R L
Sbjct:   155 SDWVLSVAFSPDGQLLASG--SAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLL 212

Query:   591 AAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 649
             A+G +D +IK WD  S  L  +++       S  + F+ +G LLA  ++D  IK+  T+ 
Sbjct:   213 ASGSNDATIKLWDPPSGSLKHTLEGHSNKIES--LAFSPNGQLLASGSSDATIKLWDTAT 270

Query:   650 G 650
             G
Sbjct:   271 G 271

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.8149	0.9820	0.9758	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.8298	0.9919	0.9761	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1113
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	8e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	4e-06
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	3e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  103 bits (258), Expect = 6e-24
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  V +SPDG L         ++++    G+ +R  L+   H G V D+A S     L 
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             +   DKTI++WD   G       GH + V SV      + + + S++ D  IK W  +
Sbjct: 67  -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123

Query: 542 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 579
                        W  ++A+          S DGT             T  G        
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
           V F     + L++  D +IK WD+ + + L ++        S  + F+ DG LLA  + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240

Query: 640 NGIKI 644
             I++
Sbjct: 241 GTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (251), Expect = 4e-23
 Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)

Query: 362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 421
             + F P  + L               GS +  +    KVWDL    +      +K    
Sbjct: 13  TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 460
            V  V  S DG+      S   ++++    G+ VR    H                    
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 461 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 502
                             +  H   VN +AFS       V +   D TIK+WD   G   
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Query: 503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 562
               GH   V SV          + S++ DG IK W                   ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 621
            DG                        LA+G  D +I+ WD+ + + + ++        +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262

Query: 622 P--RIRFNKDGCLLAVSTNDNGIKI 644
               + ++ DG  LA  + D  I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 94.3 bits (235), Expect = 5e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)

Query: 318 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 360
           +L    L  +  GH+        S   +   S   D  KT+           RTL   +S
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94

Query: 361 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 419
              S+ F P    +L   +    I +W+V + +              C   L+     D 
Sbjct: 95  YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137

Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 479
              VN V +SPDG+    +     ++++    G  V        H G VN +AFS   ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191

Query: 480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 539
           L   +   D TIK+WD + G       GHE  V SV       +  + S + DG I+ W 
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247

Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 599
                            T++A+S DG                      R  +   D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286

Query: 600 FWD 602
            WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 90/467 (19%), Positives = 170/467 (36%), Gaps = 55/467 (11%)

Query: 327 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 385
             +  S     +    +   LP   +  L        S+ F P  + LLL G++ G I L
Sbjct: 33  LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91

Query: 386 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 444
           W++ + E+L+                  +L      SV+++   SPDG+   +A S    
Sbjct: 92  WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 504
            +  +      +    ++ H   V  +AFS P+ +L       D TIK+WD   G     
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
             GH  PV S+       +  I S + DG I+ W              G+   +      
Sbjct: 194 LAGHTDPVSSLAFSPDGGL-LIASGSSDGTIRLWDLST----------GKLLRS------ 236

Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
              T  G     +    F    +   +   D +I+ WD+ S   L    +         +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290

Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 684
            F+ DG LLA  ++D  +++     G +LL +     ++   +S +  P  S + +  + 
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 685 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 741
             T      R    +     + +V S++       ++  S D + ++W L+  S      
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 788
                       ++ L F+  G ++ + +S+    LW  + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 515
              +  H GGV  +AF  P+ +L + T   D TIKVWD   G      +GH  PV  V  
Sbjct: 2   RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
                    ++ S + D  I+ W         D E                RT  G    
Sbjct: 60  SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95

Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
               V F        ++  D +IK WD+++ + LT++        S  + F+ DG  +A 
Sbjct: 96  VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152

Query: 636 STNDNGIKILATSDGIRLLRTFE 658
           S+ D  IK+     G + + T  
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 71.4 bits (176), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 34 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 92
           F   K   + +  G+WD+  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 821  VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 879
            V C A S +   + + SG G I ++++ T + + T          +A    D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 880  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 939
             D +I+++++   E    L GH+  ++ +AFS    +L SS  D  + VW          
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121

Query: 940  RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 995
                       T +  T ++ H D ++ +        +  +++   +K W  R       
Sbjct: 122  ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 996  -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029
                   +    FS D + + +   D T+ ++  +  K 
Sbjct: 173  LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.8 bits (174), Expect = 4e-13
 Identities = 47/223 (21%), Positives = 88/223 (39%), Gaps = 26/223 (11%)

Query: 863  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
            T +AF P D  ++A G  D +I+++++   E+   LKGH+  +  +A S     L S  +
Sbjct: 13   TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 923  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 980
            D  + +W       +    ++  TG T    S   V F  D    L     +  + +++ 
Sbjct: 72   DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122

Query: 981  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040
               +C+     R  +  +    FS D   V +   D T+ ++     K    +       
Sbjct: 123  ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT------ 174

Query: 1041 AGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083
             G +  V+   +A  P    +     SDG + +++   S GK 
Sbjct: 175  -GHTGEVN--SVAFSPDG-EKLLSSSSDGTIKLWDL--STGKC 211

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)

Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 511
                L +  H   +  IAFS   + L   +   D TIK+WD  NG K    +   H++ 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 512 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 569
           V  +     + N   + S++LDG +K W     G  +   E      T++A+S DG    
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
                           K     +  D +IK WD+ + + L+++                 
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200

Query: 630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 689
              LA S +   +    +SDG   L          S  S +S   +S  S          
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250

Query: 690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 749
                          +G +          +  S+   ++W L   S   +  S       
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284

Query: 750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 809
             + +  + F+  G  + + +S+    LW       +       S               
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321

Query: 810 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 867
             +T    E  V   + S + S ++S     G I L+++ T K + T          ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 927
            P D  +++ G  D +++++++    +   L GH+ R+T L FS     L S  +D+ + 
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 928 VWSSDGWEKQKN 939
           +W      K  +
Sbjct: 438 LWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 818 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 877 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            G +D +I+++++R  E    L GH+  +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 798  QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 856
            ++W   +G ++    T       V   A S + +Y+ S S    I L+++ T + + T  
Sbjct: 34   KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 857  PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 916
                  + +AF P D  I++    D +I++++V   +  + L+GH+  +  +AFS     
Sbjct: 91   GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 917  LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 975
            + SS  D  + +W     +          TG T    S   V F  D    L    +  +
Sbjct: 150  VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201

Query: 976  AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033
             +++ +  +C+     R     +    FS D  L+ +   D T+ V+     +    +
Sbjct: 202  KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 397
            K ++          S+ F P    L+  G++ G I LW    G   R  L         
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 398 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 441
                             ++WDL + S  L+   +     SV  V +SPDG L     S 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
             V+++    G  +   L +  H G V+ ++FS P+  L V    DD TI++WD   G  
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
               EGH   V SV       +    ST  DG ++ W         + +      T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
           S DG                         +   D +I+ WD+ +     S   DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 622 PRI 624
              
Sbjct: 460 KSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 3e-10
 Identities = 56/317 (17%), Positives = 111/317 (35%), Gaps = 20/317 (6%)

Query: 799  LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 854
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 855  FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 914
                  + T LAF P    + +    D +I+++++R  +  S L GH+  ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 915  N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973
              ++ S  +D  + +W      K     L   +    ++       F  D          
Sbjct: 211  GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262

Query: 974  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033
                    +            S+ +    FS D +L+ +   D TV ++     KL   +
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGS 1093
                +    VSS      ++  P      + G  DG + +++    +    +    +  S
Sbjct: 323  TLKGH-EGPVSS------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 1094 TSSMPATPPVGGSGSDQ 1110
             S  P    V    +D 
Sbjct: 376  VSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 44.0 bits (105), Expect = 4e-06
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 4  LSRELVFLILQFLDEEKFKETVHKLEQESGF 34
             EL  LIL++L    ++ET   L++ESG 
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 898  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 957
            LKGH+  +T +AFS    +L +   D  + VW  +  E    R L+  TG          
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56

Query: 958  VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016
            V    D  +         + +++    ECV+      S   ++   FS D +++ +   D
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114

Query: 1017 ATVCVFSAANLKLR 1030
             T+ V+     K  
Sbjct: 115  KTIKVWDVETGKCL 128

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
            +  H G V  +AFS     L   +  DD T++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
           E+   LKGH+  +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
            +  H G V  +AFS   K L   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
           ++   LKGH+  +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 35  FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 90
           F       + + NG+ ++  ++         K++ N     + FE+R Q+++E + +   
Sbjct: 2   FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56

Query: 91  AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 135
            +A+E   ++L  F  FNE+  KEI +L+ L  F +    S Y  
Sbjct: 57  LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.8 bits (99), Expect = 0.001
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 341 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 400
           +        +            S+ F P    L+  G++ G I LW++ + + L      
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369

Query: 401 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 460
                                +V  V +SPDG +     +   V+++    G  +R    
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 505
           +D H   V  + FS       + +   D TI++WD     K   F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1113
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
PTZ00421	493	coronin; Provisional	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.9
KOG0639	705	consensus Transducin-like enhancer of split protei	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
COG2319	466	FOG: WD40 repeat [General function prediction only	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.81
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG1310	758	consensus WD40 repeat protein [General function pr	99.78
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.77
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.75
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.71
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
KOG1334	559	consensus WD40 repeat protein [General function pr	99.7
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.66
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.66
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.61
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.57
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.57
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.53
KOG2139	445	consensus WD40 repeat protein [General function pr	99.51
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.51
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
COG4946	668	Uncharacterized protein related to the periplasmic	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.48
KOG2321	703	consensus WD40 repeat protein [General function pr	99.47
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.44
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.43
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.4
KOG2315	566	consensus Predicted translation initiation factor	99.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.39
PRK05137	435	tolB translocation protein TolB; Provisional	99.39
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.38
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.38
PRK04922	433	tolB translocation protein TolB; Provisional	99.36
PRK04922	433	tolB translocation protein TolB; Provisional	99.36
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.36
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.35
PRK02889	427	tolB translocation protein TolB; Provisional	99.35
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.33
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.33
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.32
PRK05137	435	tolB translocation protein TolB; Provisional	99.32
PRK02889	427	tolB translocation protein TolB; Provisional	99.32
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.29
COG4946	668	Uncharacterized protein related to the periplasmic	99.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.26
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.26
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.25
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.22
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.2
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
PRK04792	448	tolB translocation protein TolB; Provisional	99.19
PRK01029	428	tolB translocation protein TolB; Provisional	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.16
KOG2314	698	consensus Translation initiation factor 3, subunit	99.16
KOG4547	541	consensus WD40 repeat-containing protein [General	99.12
PRK00178	430	tolB translocation protein TolB; Provisional	99.12
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
KOG4547	541	consensus WD40 repeat-containing protein [General	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.09
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.08
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.03
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.02
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.99
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.99
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.95
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.91
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.89
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.86
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.85
PRK04043	419	tolB translocation protein TolB; Provisional	98.85
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.81
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.8
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.8
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.72
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.71
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.7
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.69
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.63
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.59
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.54
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.52
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.51
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.49
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.49
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.46
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.46
PRK02888	635	nitrous-oxide reductase; Validated	98.44
KOG2695	425	consensus WD40 repeat protein [General function pr	98.44
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.43
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.42
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.42
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.4
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.36
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.35
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.34
PRK02888	635	nitrous-oxide reductase; Validated	98.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.31
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.26
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.26
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.25
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.19
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.12
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.07
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.05
KOG3621	726	consensus WD40 repeat-containing protein [General	98.04
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.04
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.0
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.99
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.97
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.93
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.91
KOG3621	726	consensus WD40 repeat-containing protein [General	97.9
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.81
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.8
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.79
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.79
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.78
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.74
COG3391	381	Uncharacterized conserved protein [Function unknow	97.72
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.71
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.63
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.62
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.55
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.54
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.48
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.44
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.4
COG3391	381	Uncharacterized conserved protein [Function unknow	97.39
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.29
PRK13616	591	lipoprotein LpqB; Provisional	97.24
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.19
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.12
PRK13616	591	lipoprotein LpqB; Provisional	97.11
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.1
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.09
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.06
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.06
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.0
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.96
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.94
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.91
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.89
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.85
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.83
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.77
KOG2395	644	consensus Protein involved in vacuole import and d	96.74
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.59
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.52
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.5
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.33
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.31
PRK10115	686	protease 2; Provisional	96.27
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.27
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.2
KOG2395	644	consensus Protein involved in vacuole import and d	96.18
KOG2444	238	consensus WD40 repeat protein [General function pr	96.14
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.14
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.05
PHA02713	557	hypothetical protein; Provisional	95.93
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.83
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.76
KOG2444	238	consensus WD40 repeat protein [General function pr	95.64
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.64
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.55
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.51
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.49
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.44
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.37
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.31
PHA02713	557	hypothetical protein; Provisional	95.15
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.79
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.3
PRK10115	686	protease 2; Provisional	94.29
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	94.2
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	94.19
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	94.12
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	94.08
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.02
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.99
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	93.84
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	93.75
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.73
KOG3616	1636	consensus Selective LIM binding factor [Transcript	93.69
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.44
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.39
PHA03098	534	kelch-like protein; Provisional	93.22
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.14
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.11
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.05
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.03
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.88
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.7
PHA03098	534	kelch-like protein; Provisional	92.64
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.55
PRK13684	334	Ycf48-like protein; Provisional	92.37
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	92.33
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.25
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.18
PHA02790	480	Kelch-like protein; Provisional	92.1
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.05
COG1520	370	FOG: WD40-like repeat [Function unknown]	91.75
PRK13684	334	Ycf48-like protein; Provisional	91.6
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.47
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.78
KOG2247	615	consensus WD40 repeat-containing protein [General	90.67
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.41
COG5167	776	VID27 Protein involved in vacuole import and degra	90.07
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.59
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	89.54
COG4590	733	ABC-type uncharacterized transport system, permeas	89.5
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.39
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.15
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.62
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	88.56
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	88.28
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.66
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	87.23
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.92
PHA02790	480	Kelch-like protein; Provisional	86.71
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.68
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.57
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	86.37
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.33
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	86.25
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.11
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	85.35
COG4590	733	ABC-type uncharacterized transport system, permeas	85.11
KOG2377	657	consensus Uncharacterized conserved protein [Funct	84.58
COG3292	671	Predicted periplasmic ligand-binding sensor domain	84.24
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	83.57
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.56
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	83.39
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	83.23
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.14
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	82.96
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	82.76
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	82.71
COG3292	671	Predicted periplasmic ligand-binding sensor domain	81.75
COG1520	370	FOG: WD40-like repeat [Function unknown]	81.74
KOG2377	657	consensus Uncharacterized conserved protein [Funct	81.69
KOG3616	1636	consensus Selective LIM binding factor [Transcript	81.63
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	81.52
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	81.34
PF12768	281	Rax2: Cortical protein marker for cell polarity	81.2
PF11635	753	Med16: Mediator complex subunit 16; InterPro: IPR0	80.95
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	80.91

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=7.2e-66  Score=495.32  Aligned_cols=459  Identities=20%  Similarity=0.326  Sum_probs=391.0

Q ss_pred             hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHH
Q 001258            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQK   80 (1113)
Q Consensus         5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   80 (1113)
                      +.||||||+|||+|+.+.+++++||+|+++++|    ++-|.+.|..|+||.++..+.+|+      ++.+-+..||+|.
T Consensus         7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsLK------LP~kkL~dLYEqi   80 (508)
T KOG0275|consen    7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSLK------LPDKKLIDLYEQI   80 (508)
T ss_pred             cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhcc------CchhHHHHHHHHH
Confidence            568999999999999999999999999999998    889999999999999999999994      4446889999999


Q ss_pred             HHHHHhcCCHHHHHHHHHhh--cccccccChHHHHHHHHHhcccccccchhhccCCCChhHHHHHHHHHHhhccCCCCcc
Q 001258           81 YLEALDKHDRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFR  158 (1113)
Q Consensus        81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~  158 (1113)
                      .|||+|.++...|..+||+.  +.-|+..+|++|-+|+.||..+.++.++.|.+ .+.+.+|..+.+.|...+.-     
T Consensus        81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V-----  154 (508)
T KOG0275|consen   81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV-----  154 (508)
T ss_pred             HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence            99999999999999999966  44566779999999999999999999999876 34556667777777666554     


Q ss_pred             cccCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001258          159 DKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGP  238 (1113)
Q Consensus       159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1113)
                             +||+||+.||.||++||+.                                          +|.+||++..|+
T Consensus       155 -------VppSRLlaLlGQaLKWQqH------------------------------------------QGLLPPGt~iDL  185 (508)
T KOG0275|consen  155 -------VPPSRLLALLGQALKWQQH------------------------------------------QGLLPPGTTIDL  185 (508)
T ss_pred             -------cChHHHHHHHHHHhhhHhh------------------------------------------cCCCCCCceeee
Confidence                   9999999999999999988                                          467789999999


Q ss_pred             CCCCCCCCCCcccccccCCCCccCCCccccccCCCCCCcccccccCCCCCCCCCcccCCCCCchhhhcccCCCCCccccc
Q 001258          239 FQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEIN  318 (1113)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  318 (1113)
                      |++.++         |....++..|+...+.|+|+++|++                                        
T Consensus       186 FRGkAA---------~K~~~Ee~~Pt~l~r~IKFg~KSh~----------------------------------------  216 (508)
T KOG0275|consen  186 FRGKAA---------MKDQEEERYPTQLARSIKFGQKSHV----------------------------------------  216 (508)
T ss_pred             ccchhh---------hhhhHhhhchHHhhhheecccccch----------------------------------------
Confidence            998874         4556777777777777777777654                                        


Q ss_pred             cCcccCCccccCCcccCCCCCCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeee
Q 001258          319 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRN  398 (1113)
Q Consensus       319 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~  398 (1113)
                                                                 .|..|||||+| |++|+.||.|.+||+.+|+......
T Consensus       217 -------------------------------------------EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLk  252 (508)
T KOG0275|consen  217 -------------------------------------------ECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLK  252 (508)
T ss_pred             -------------------------------------------hheeeCCCCce-Eeeccccceeeeehhccchhhhhhh
Confidence                                                       68899999996 9999999999999999999876433


Q ss_pred             eeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCC
Q 001258          399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPN  477 (1113)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~  477 (1113)
                      ++.-           ..+..|.++|.|+.||.|...||+|+.||.|+||.+.+|.|++   .|. +|...|+|+.||.|+
T Consensus       253 YQAq-----------d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClR---rFdrAHtkGvt~l~FSrD~  318 (508)
T KOG0275|consen  253 YQAQ-----------DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLR---RFDRAHTKGVTCLSFSRDN  318 (508)
T ss_pred             hhhh-----------cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHH---HhhhhhccCeeEEEEccCc
Confidence            3322           2467789999999999999999999999999999999999998   454 899999999999999


Q ss_pred             CeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC--Cc
Q 001258          478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RW  555 (1113)
Q Consensus       478 ~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~  555 (1113)
                      .  .+++++.|.+++|.-+.+|++++.++||.+.|+...|  ..+|..+++++.||+|++|+..+.++..++...+  ..
T Consensus       319 S--qiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~  394 (508)
T KOG0275|consen  319 S--QILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYP  394 (508)
T ss_pred             c--hhhcccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCccc
Confidence            9  5999999999999999999999999999999999886  4677899999999999999999998888776543  35


Q ss_pred             eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC-CCCCCcCeEEECCCCCEEE
Q 001258          556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLA  634 (1113)
Q Consensus       556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~  634 (1113)
                      |.++..-|...                    ..++++...++|+|-++ .|+.+..+... ...+...+++.+|.|.+++
T Consensus       395 vnsv~~~PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiY  453 (508)
T KOG0275|consen  395 VNSVILLPKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIY  453 (508)
T ss_pred             ceeEEEcCCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEE
Confidence            55555555433                    46888889999999998 57788777533 2234566889999999999


Q ss_pred             EEECCCcEEEEEcCCCccceecc
Q 001258          635 VSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +.+.|+.++.+...+| .+-+.+
T Consensus       454 cigED~vlYCF~~~sG-~LE~tl  475 (508)
T KOG0275|consen  454 CIGEDGVLYCFSVLSG-KLERTL  475 (508)
T ss_pred             EEccCcEEEEEEeecC-ceeeee
Confidence            9999999999998887 444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.5e-64  Score=498.09  Aligned_cols=458  Identities=22%  Similarity=0.310  Sum_probs=375.5

Q ss_pred             hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHH
Q 001258            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKY   81 (1113)
Q Consensus         5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   81 (1113)
                      +.|++|+++|+|+.+||.+|+..||.|+|+.++   ...|.+.++.|+|++++..+..+...+ +.-...+.|++.+|+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999886   899999999999999999998875333 3334459999999999


Q ss_pred             HHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccc-cchhhccCCCChhHHHHHHHHHHhhccCCCCcccc
Q 001258           82 LEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFR-ENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDK  160 (1113)
Q Consensus        82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~  160 (1113)
                      ||++..+...+|+.+||+.+.++. ++.+++++|..-+..++-. .++... .......|.+|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999988885 5889999998866554433 333322 223677899999999999999999    


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHhhCCCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001258          161 LQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQ  240 (1113)
Q Consensus       161 ~~~~~~p~~rL~~ll~qa~~~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (1113)
                           +|++||+.||+||++||+++|.||+ ..+..+||.||.|++               ..+|               
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~---------------~qip---------------  213 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR---------------LQIP---------------  213 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc---------------ccCC---------------
Confidence                 9999999999999999999999999 566689999999988               1111               


Q ss_pred             CCCCCCCCcccccccCCCCccCCCccccccCCCCCCcccccccCCCCCCCCCcccCCCCCchhhhcccCCCCCccccccC
Q 001258          241 PTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLP  320 (1113)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  320 (1113)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (519)
T KOG0293|consen  214 --------------------------------------------------------------------------------  213 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCccccCCcccCCCCCCCCCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeee
Q 001258          321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF  399 (1113)
Q Consensus       321 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~  399 (1113)
                                                  .+..+++. |.++||-+.||++|+| ||+|+.|.+..||++.....+..   
T Consensus       214 ----------------------------~qt~qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl---  261 (519)
T KOG0293|consen  214 ----------------------------SQTWQILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKL---  261 (519)
T ss_pred             ----------------------------chhhhhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceee---
Confidence                                        11113334 9999999999999997 99999999999999876544221   


Q ss_pred             eeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCe
Q 001258          400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ  479 (1113)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~  479 (1113)
                                   ..++.||..+|..+.||||.+||++|+.|..+.+||+.+|.......  .+|...+.+++|.|||. 
T Consensus       262 -------------~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~-  325 (519)
T KOG0293|consen  262 -------------KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF-  325 (519)
T ss_pred             -------------eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc-
Confidence                         11588999999999999999999999999999999999998775321  24668999999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEE
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  558 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  558 (1113)
                       .+++|+.|+++..||+. |..+..+++-. ..|.++++  +.||.++++.+.|..|++++..+...+. +.....+|++
T Consensus       326 -~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its  400 (519)
T KOG0293|consen  326 -RFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITS  400 (519)
T ss_pred             -eeEecCCCCcEEEecCC-cchhhcccccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeE
Confidence             69999999999999954 66666666543 55888885  4677899999999999999988754443 2334556777


Q ss_pred             EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEE
Q 001258          559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVST  637 (1113)
Q Consensus       559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~  637 (1113)
                      .+.|.+++                     ++++.-.+..+++||++..+.+..+.+|.....+..-+|.- +..++++|+
T Consensus       401 ~~iS~d~k---------------------~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS  459 (519)
T KOG0293|consen  401 FSISKDGK---------------------LALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS  459 (519)
T ss_pred             EEEcCCCc---------------------EEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC
Confidence            77777776                     57777789999999999988888888887655566667765 568999999


Q ss_pred             CCCcEEEEEcCCCccceeccccc
Q 001258          638 NDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       638 ~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                      .|+.|+||+..++ .++..+.||
T Consensus       460 ED~kvyIWhr~sg-kll~~LsGH  481 (519)
T KOG0293|consen  460 EDSKVYIWHRISG-KLLAVLSGH  481 (519)
T ss_pred             CCceEEEEEccCC-ceeEeecCC
Confidence            9999999999888 666666543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.8e-57  Score=480.55  Aligned_cols=573  Identities=15%  Similarity=0.229  Sum_probs=473.8

Q ss_pred             EEEcCCCCeEEEEEecCCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1113)
Q Consensus       364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  442 (1113)
                      ++|+++|+. |++.. ...|.+-|+.++... ..                  .-......|++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~-~d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTAC-GDRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEec-CceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999995 77764 346888999998763 21                  2334567899999999999999999999


Q ss_pred             eEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC
Q 001258          443 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  521 (1113)
Q Consensus       443 ~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  521 (1113)
                      .+++|++.+++.++   .++. |+++|.-++|+|.+.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998777   6676 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEE
Q 001258          522 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1113)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1113)
                      +...|++|..|+++++||+.+... ...+..|...|+++++++|+.                     .+++++.|..+.+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV  218 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence            878899999999999999996554 667788888899888888876                     5899999999999


Q ss_pred             EECCCCceEEEEccCCCCCCcCeEEECCC-----CCEEEEEECCCcEEEEEcCCCccceecccccc-ccccccCCCCCCC
Q 001258          601 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLA-YDASRTSENSKPT  674 (1113)
Q Consensus       601 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  674 (1113)
                      ||+.+.+....+....   .+-++.+-++     +.++++++.+|.+++||..++ .+........ ..+.         
T Consensus       219 wd~~~~~~l~~lp~ye---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~-~~~~~~~~~~~~e~~---------  285 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYE---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESG-KCVYKQRQSDSEEID---------  285 (775)
T ss_pred             eehhhhhhhheechhh---heeeEEEechhcCCcceEEEEecCCceEEEEecccc-hhhhhhccCCchhhh---------
Confidence            9998877777776543   3566777776     679999999999999999888 4433322211 0000         


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                                                      ..........++....|..+.++|.++.....++       .+....|
T Consensus       286 --------------------------------~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI  326 (775)
T KOG0319|consen  286 --------------------------------HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEI  326 (775)
T ss_pred             --------------------------------cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhh
Confidence                                            0111223455667777889999987765444333       3466788


Q ss_pred             EEEEE-eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEE
Q 001258          755 SRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  833 (1113)
Q Consensus       755 ~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l  833 (1113)
                      .++.| .|+.+.+++++..+.+++|+......                      .  .+.+  |.+.|.++....+|-+|
T Consensus       327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c----------------------~--ii~G--H~e~vlSL~~~~~g~ll  380 (775)
T KOG0319|consen  327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYC----------------------Q--IIPG--HTEAVLSLDVWSSGDLL  380 (775)
T ss_pred             eeeeecCCccceEEEEeCCCceEEEecCCCce----------------------E--EEeC--chhheeeeeecccCcEE
Confidence            88887 56778899999999999997653211                      1  1333  99999999977888999


Q ss_pred             EEEe-CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee---------eeeec
Q 001258          834 MSAS-GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLK  899 (1113)
Q Consensus       834 ~~~s-dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~---------~~~l~  899 (1113)
                      ++++ |.++++|.++..    .++....+|...|.+++++.....+|++++.|+++++|++...+.         .....
T Consensus       381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~  460 (775)
T KOG0319|consen  381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER  460 (775)
T ss_pred             EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence            9999 999999988433    345667899999999999886678999999999999999976211         11335


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEE
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIF  978 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~  978 (1113)
                      .|...|++++.+|+.+++||||.|++.+||+++.     .....++.||..   .+.++.|+|..+.+++ +.|++|+||
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~-----~~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW  532 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQ-----LRLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIW  532 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccC-----ceEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEE
Confidence            7999999999999999999999999999999995     345677888885   8999999999999999 699999999


Q ss_pred             eCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCC
Q 001258          979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus       979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
                      .+.++.|++++.  ||...|..+.|-.+|+.|++++.||.|++|+++++++.+.+.       +|...|+.  ++.+| +
T Consensus       533 ~is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~DrvWa--L~~~~-~  600 (775)
T KOG0319|consen  533 SISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDRVWA--LSVSP-L  600 (775)
T ss_pred             Eeccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccceeEE--EeecC-c
Confidence            999999999998  899999999999999999999999999999999999999988       99999997  55556 5


Q ss_pred             CCEEEEEeCCCcEEEEeccCCC
Q 001258         1059 PNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1059 ~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +..+++|+.||.|.+|.-.+.+
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHH
Confidence            6799999999999999755544

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.2e-54  Score=464.35  Aligned_cols=546  Identities=13%  Similarity=0.195  Sum_probs=451.7

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-CCcceEEEEEcCCCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l  435 (1113)
                      ..+.+++++.+||+++ |++++....+++|++.+|+.+..                   ... |+++|.-++|+|.|.+|
T Consensus        61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll  120 (775)
T KOG0319|consen   61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL  120 (775)
T ss_pred             chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence            4578999999999995 88999999999999999987652                   444 99999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCcCEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS  514 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~~v~~  514 (1113)
                      |+|+.|+.|+|||+..+.+..   .|+||.+.|+++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|.+.|++
T Consensus       121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            999999999999999998777   79999999999999999886678999999999999999655 48889999999999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      ++|.++  +..+++++.|..+.+||+.+.+....++.. ..+.++.+-+++.                ...+.++++++.
T Consensus       198 L~~~~d--~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~  258 (775)
T KOG0319|consen  198 LAFSED--SLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG  258 (775)
T ss_pred             eeeccC--CceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence            997654  578999999999999999765555544432 2344554444311                011458999999


Q ss_pred             CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  674 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1113)
                      +|.+++||..+++++....... ...+..+...+....++..+.|..+.++|..+. ++.+.+-|....+.        .
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D  328 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D  328 (775)
T ss_pred             CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence            9999999999998876654432 223666666666667777788899999998888 77888877777655        2


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                      +...+                                ++...+++++....+++|++.+....    .+    .+|...|
T Consensus       329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v  368 (775)
T KOG0319|consen  329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV  368 (775)
T ss_pred             eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence            23333                                56788999999999999987764322    21    4699999


Q ss_pred             EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC-CEE
Q 001258          755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV  833 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~-~~l  833 (1113)
                      .++....+|..|++++.|.++++|.++....                   .....  ..+.+|.+.|.+++++..+ .++
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence            9999888889999999999999998742111                   00111  1223499999999998665 477


Q ss_pred             EEEe-CCeEEEEECCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258          834 MSAS-GGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       834 ~~~s-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      ++++ |.+|++|++...+.         ..+...|...|+|++++| +.+++|+|+.|.+.+||+++......+|.||..
T Consensus       428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            8888 99999999975221         123457899999999999 889999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCc
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  982 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~  982 (1113)
                      .|+++.|++..+.|+|+|.|+||+||.+++..     +++.++||..   .|..+.|-.+|+.|++ +.||-+++|++++
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            99999999999999999999999999999954     6788888885   8999999999999999 6999999999999


Q ss_pred             cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      .+|..++.  .|...|.+++.++++.++++|+.||.|.+|.=.|
T Consensus       579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999876  8999999999999999999999999999996544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.6e-50  Score=414.06  Aligned_cols=579  Identities=15%  Similarity=0.159  Sum_probs=439.1

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +.-.-+.-.|.|..+|.+  ....|.+-++++.....                   ++.+|...++-..|||.|.|+|+|
T Consensus        19 g~~~~ig~dpkgd~ilY~--nGksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASG   77 (603)
T KOG0318|consen   19 GVPIIIGGDPKGDNILYT--NGKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASG   77 (603)
T ss_pred             CcceEeccCCCCCeEEEe--CCCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeec
Confidence            334455667888877765  34678888887765543                   578999999999999999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  517 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  517 (1113)
                      ...|.|+|||....+.+ ...++..-.++|..++|+.|+++ +.++| +.++..+++-.++|..+..+.||...|+++.|
T Consensus        78 D~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R-I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~  155 (603)
T KOG0318|consen   78 DVSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR-IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF  155 (603)
T ss_pred             CCcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE-EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence            99999999998874433 23367778899999999999996 33333 33444444444578889999999999999998


Q ss_pred             eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1113)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1113)
                      -++.. -.+++|+.|++|.+|+-..-+-...+..|...|.++.|+|||.                     ++++.+.||+
T Consensus       156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~---------------------~Fat~gsDgk  213 (603)
T KOG0318|consen  156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS---------------------RFATAGSDGK  213 (603)
T ss_pred             cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCC---------------------eEEEecCCcc
Confidence            87654 5799999999999996554444444555666666666666555                     7999999999


Q ss_pred             EEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          598 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       598 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      |.+||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+.+++.-...              
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~--------------  278 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGST--------------  278 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCc--------------
Confidence            9999999999999997 3345668999999999999999999999999999988 56655532111              


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                .-.....+.+....+++.+.+|+|.+++..........       .+|...|++
T Consensus       279 --------------------------v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i-------~GHnK~ITa  325 (603)
T KOG0318|consen  279 --------------------------VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVI-------SGHNKSITA  325 (603)
T ss_pred             --------------------------hhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhhee-------cccccceeE
Confidence                                      00112233445788999999999999998875522222       469999999


Q ss_pred             EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258          757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  836 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  836 (1113)
                      ++.++++++|++++.||.|.-|+...+..                        ..+.+..|...|.+++.+..+.++.++
T Consensus       326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~------------------------~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  326 LTVSPDGKTIYSGSYDGHINSWDSGSGTS------------------------DRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEEcCCCCEEEeeccCceEEEEecCCccc------------------------cccccccccceEEEEeecCCCcEEEEe
Confidence            99999999999999999999998764322                        113334599999999999888888888


Q ss_pred             eCCeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258          837 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       837 sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  914 (1113)
                      -|.++++.++........  ++-.. ...+++..+ ++.+++.++.++.+.+-|...-.   ... -.-...+++++|++
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~-QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~---~~~-~~y~~s~vAv~~~~  455 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGS-QPKGLAVLS-DGGTAVVACISDIVLLQDQTKVS---SIP-IGYESSAVAVSPDG  455 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCC-CceeEEEcC-CCCEEEEEecCcEEEEecCCcce---eec-cccccceEEEcCCC
Confidence            899999999865433322  12122 234888888 66677777766555554443221   111 22346789999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCC
Q 001258          915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE  993 (1113)
Q Consensus       915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~  993 (1113)
                      ..++.|+.|+.|+||.+...+......   ...|.   ++|+.++||||+.+||++ ..+.+.+||+.+.+...... .-
T Consensus       456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~---~~~h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w-~F  528 (603)
T KOG0318|consen  456 SEVAVGGQDGKVHVYSLSGDELKEEAK---LLEHR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW-AF  528 (603)
T ss_pred             CEEEEecccceEEEEEecCCcccceee---eeccc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee-ee
Confidence            999999999999999999866432211   12222   489999999999999997 67899999999988733322 25


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258          994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus       994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
                      |...|.+++|+|+++++|+|+.|..|.||+++.-...-.      ....|...|..  +.|.  |...|++.+.|.+|++
T Consensus       529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~------iknAH~~gVn~--v~wl--de~tvvSsG~Da~iK~  598 (603)
T KOG0318|consen  529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHII------IKNAHLGGVNS--VAWL--DESTVVSSGQDANIKV  598 (603)
T ss_pred             eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheE------eccccccCcee--EEEe--cCceEEeccCcceeEE
Confidence            899999999999999999999999999999976544322      23478777886  6776  5689999999999999


Q ss_pred             Eecc
Q 001258         1074 FEPL 1077 (1113)
Q Consensus      1074 W~~~ 1077 (1113)
                      |++.
T Consensus       599 W~v~  602 (603)
T KOG0318|consen  599 WNVT  602 (603)
T ss_pred             eccc
Confidence            9975

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.7e-50  Score=427.57  Aligned_cols=570  Identities=19%  Similarity=0.308  Sum_probs=442.6

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ..+.+...|++++.||+|.. |++-...|...+-++.....+++++|                    ..+|.|+.|||||
T Consensus        50 l~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f--------------------k~~v~~i~fSPng  108 (893)
T KOG0291|consen   50 LPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF--------------------KRGVGAIKFSPNG  108 (893)
T ss_pred             EEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee--------------------cCccceEEECCCC
Confidence            33448999999999999995 66667889999999988888776544                    3489999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCce-----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce--eeEe
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYIF  505 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~~  505 (1113)
                      +++|+|. .+.+.||.......     .....++.+|...|.++.|+.|.+  +|++||.|.++++|+++..+-  .+.+
T Consensus       109 ~~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l  185 (893)
T KOG0291|consen  109 KFFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTYAL  185 (893)
T ss_pred             cEEEEEe-cceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceEec
Confidence            9999886 45699998764322     233456779999999999999999  899999999999999986655  5678


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-----eC---------CCCceEEEEEccCCCeEEec
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EA---------PGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~---------~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      .+|.+.|.+.-|.  .+...+++.+.||.+.+|..........-     .+         ....+....|.. .++.+..
T Consensus       186 ~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k-~~k~~ln  262 (893)
T KOG0291|consen  186 NGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK-TKKHYLN  262 (893)
T ss_pred             cCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE-EEeeeec
Confidence            8999999887654  34467999999999999987732111100     00         000111111111 0122222


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-CcEEEEEcCCC
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDG  650 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~  650 (1113)
                      .....+.+.+|++..+.|++|-..|...+|.+....+++.+....+  .|..++|+..|.+|+.|+.. |.+.+|+..+.
T Consensus       263 ~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE  340 (893)
T KOG0291|consen  263 QNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE  340 (893)
T ss_pred             ccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--eeeEEEecccCCEEEEcCCccceEEEEEeecc
Confidence            2335788999999999999999999999999999999999976644  69999999999999998764 78889987655


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       ..+-..                                                                         
T Consensus       341 -sYVlKQ-------------------------------------------------------------------------  346 (893)
T KOG0291|consen  341 -SYVLKQ-------------------------------------------------------------------------  346 (893)
T ss_pred             -ceeeec-------------------------------------------------------------------------
Confidence             111111                                                                         


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                       .+|...+.+++++|||+.+++|++||.|+|||..                      +|.+...
T Consensus       347 -----------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~----------------------SgfC~vT  387 (893)
T KOG0291|consen  347 -----------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ----------------------SGFCFVT  387 (893)
T ss_pred             -----------------cccccceeeEEECCCCcEEEeccCCCcEEEEecc----------------------CceEEEE
Confidence                             3478899999999999999999999999998765                      4443332


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCC-cEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDS-SIQIY  887 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg-~v~iw  887 (1113)
                       +.  .|...|+++.|+.+|+.+++.+ ||+|+.||+...+..+++..... ...|++..| .|.++.+|+.|. .|+||
T Consensus       388 -Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvW  463 (893)
T KOG0291|consen  388 -FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVW  463 (893)
T ss_pred             -ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEE
Confidence             22  3999999999999999999999 99999999999999999875443 467888888 899999998876 89999


Q ss_pred             EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258          888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l  967 (1113)
                      ++.+|+++..+.||.++|.+++|+|++..|+|+|.|.+|++||+-..... .+.+.+.       ..+..++|+|||+.+
T Consensus       464 S~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl~i~-------sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  464 SVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETLEIR-------SDVLAVSFRPDGKEL  535 (893)
T ss_pred             EeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-eeeEeec-------cceeEEEEcCCCCeE
Confidence            99999999999999999999999999999999999999999998764221 1122222       257899999999999


Q ss_pred             EE-EcCCeEEEEeCCccceeecccc------------------CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258          968 LV-VHETQLAIFETTKLECVKQWVP------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus       968 ~~-~~d~~v~v~d~~~~~~~~~~~~------------------~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
                      ++ .-||.|.+||...+..+..+..                  .......+.+++|+||.+|++|+....|++|++.++-
T Consensus       536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~v  615 (893)
T KOG0291|consen  536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGV  615 (893)
T ss_pred             EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhh
Confidence            99 5899999999987665533221                  0124679999999999999999999999999999987


Q ss_pred             eeeecCCCc--------------------------------------ccCCCc----------ccCccceEEEEeCCCCC
Q 001258         1029 LRCRINPSA--------------------------------------YLPAGV----------SSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus      1029 ~~~~~~~~~--------------------------------------~~~~gh----------~~~v~~i~~~~~p~d~~ 1060 (1113)
                      ++.+++...                                      .+| |.          ...|....+.|+| .|+
T Consensus       616 llkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lp-G~~~gdlssRr~rpeIrv~sv~fsP-tgr  693 (893)
T KOG0291|consen  616 LLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALP-GVQRGDLSSRRFRPEIRVTSVQFSP-TGR  693 (893)
T ss_pred             eeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCC-ccccCCccccccCceEEEEEEEECC-CcC
Confidence            777665321                                      011 00          1134455799999 578


Q ss_pred             EEEEEeCCCcEEEEeccCC
Q 001258         1061 EFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1061 ~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                      -++.++..| |.|+.+.+.
T Consensus       694 aFAaatTEG-l~IYsld~~  711 (893)
T KOG0291|consen  694 AFAAATTEG-LLIYSLDTT  711 (893)
T ss_pred             eeeeecccc-eEEEecCCc
Confidence            888888777 677777553

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.6e-54  Score=422.43  Aligned_cols=377  Identities=20%  Similarity=0.344  Sum_probs=306.6

Q ss_pred             CCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC
Q 001258          339 QAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  418 (1113)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (1113)
                      ++.+......++-...-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.+.....                   +.++
T Consensus        96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg  155 (480)
T KOG0271|consen   96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG  155 (480)
T ss_pred             chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence            3445666667777777789999999999999996 9999999999999999877665                   5899


Q ss_pred             CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-----CCCeeEEEEecCCCcEEE
Q 001258          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----~~~~~~l~s~s~d~~i~i  493 (1113)
                      |...|.|++|||||+.||+|+.||+|++||.++|+++..  .|.+|...|++++|-|     ..+  +|++++.||+|+|
T Consensus       156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI  231 (480)
T KOG0271|consen  156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI  231 (480)
T ss_pred             CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence            999999999999999999999999999999999987754  6889999999999965     455  7999999999999


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      ||+..+.++..+.||+.+|+|++|-.  + .+|++|+.|++|++|+...+.....+.+|.+.|+.++.+.|--       
T Consensus       232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-------  301 (480)
T KOG0271|consen  232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-------  301 (480)
T ss_pred             EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-------
Confidence            99999999999999999999999742  3 4999999999999999999888999999999999999887643       


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                                     |-+|..|.+        +........... ...-+....-..+..|++|++|.++.+|+.....+
T Consensus       302 ---------------LRtgaf~~t--------~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk  358 (480)
T KOG0271|consen  302 ---------------LRTGAFDHT--------GRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK  358 (480)
T ss_pred             ---------------hhccccccc--------cccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc
Confidence                           222222111        100000000000 00000011111235566666666666665322211


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      ++..                                                                            
T Consensus       359 pi~r----------------------------------------------------------------------------  362 (480)
T KOG0271|consen  359 PITR----------------------------------------------------------------------------  362 (480)
T ss_pred             chhh----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                                                                                                     +
T Consensus       363 -------------------------------------------------------------------------------m  363 (480)
T KOG0271|consen  363 -------------------------------------------------------------------------------M  363 (480)
T ss_pred             -------------------------------------------------------------------------------h
Confidence                                                                                           1


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      .  +|..-|..+.||||++++|+++ |..|++|+..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus       364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t  440 (480)
T KOG0271|consen  364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT  440 (480)
T ss_pred             h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence            1  2788889999999999999999 99999999999999999999999999999999 999999999999999999999


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      .++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus       441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=4.7e-49  Score=420.88  Aligned_cols=609  Identities=14%  Similarity=0.198  Sum_probs=450.9

Q ss_pred             CCcEEEEE-cCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          359 SSPMSMDF-HPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       359 ~~V~~~~~-spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      ..+..+.. +..|++  ++++....|.+||+.+|+.....                 +.......|+|+.-+||.-+||+
T Consensus        22 aN~~~~~~~~~~Gr~--va~~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAV   82 (888)
T KOG0306|consen   22 ANINFVVKRSGKGRA--VAVSALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAV   82 (888)
T ss_pred             cceeEEEeecCCCcE--EEEeccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEE
Confidence            33443333 345775  33445668999999999554310                 12234468999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  517 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  517 (1113)
                      |..||.|+||+..++....   ++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+..-|
T Consensus        83 GYaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F  157 (888)
T KOG0306|consen   83 GYADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALF  157 (888)
T ss_pred             EecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhc
Confidence            9999999999999876444   7999999999999999999  7999999999999999988888999999999998776


Q ss_pred             eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1113)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1113)
                      ..  +..++++.+.|+.|++||+.+..+..+...|...+..+++.+                       +.+++++.|+.
T Consensus       158 ~~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse  212 (888)
T KOG0306|consen  158 LN--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSE  212 (888)
T ss_pred             cC--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCc
Confidence            53  337999999999999999999888888888888787777765                       24899999999


Q ss_pred             EEEEECCCCc------------eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc----cc
Q 001258          598 IKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN----LA  661 (1113)
Q Consensus       598 i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~  661 (1113)
                      +++|++....            ....+...+ ......+...++++++++-+.|..+.++.+.+..+..+.+..    ..
T Consensus       213 ~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~K  291 (888)
T KOG0306|consen  213 LKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAK  291 (888)
T ss_pred             eEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhh
Confidence            9999982210            111121111 223456777788999999999999999998776444333321    00


Q ss_pred             cccc-ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCC-cceeeccCCCceeeEeccCCCCC--
Q 001258          662 YDAS-RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV-KPRITEESNDKSKVWKLTELSEP--  737 (1113)
Q Consensus       662 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iw~~~~~~~~--  737 (1113)
                      .... ..+...+ ..+...     -..........+..   .  +.+....... ..++. -.++++..|.++.....  
T Consensus       292 kka~t~e~~~~v-~~sl~~-----~i~r~~~ir~~~ki---k--s~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p  359 (888)
T KOG0306|consen  292 KKAETEENEDDV-EKSLSD-----EIKRLETIRTSAKI---K--SFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSP  359 (888)
T ss_pred             hhccccccccch-hhhHHH-----HHHHHHheechhhe---e--EEEEEecCCcceeEEE-eecCceEEEEeccCCCCCc
Confidence            0000 0000000 000000     00000000000000   0  0000001111 23333 55678888887762211  


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                      ...+.-.+...+|...|.+++++.+...++ .+.++.+++|+..                      +.+.+...     .
T Consensus       360 ~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~-Sga~~SikiWn~~----------------------t~kciRTi-----~  411 (888)
T KOG0306|consen  360 EADRTSNIEIGGHRSDVRSLCVSSDSILLA-SGAGESIKIWNRD----------------------TLKCIRTI-----T  411 (888)
T ss_pred             cccccceeeeccchhheeEEEeecCceeee-ecCCCcEEEEEcc----------------------CcceeEEe-----c
Confidence            112222233356999999999999987444 4445678877654                      44433321     2


Q ss_pred             CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-----
Q 001258          818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----  891 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-----  891 (1113)
                      ...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|.+++.+| |++.+++|+.|.+|++||..-     
T Consensus       412 ~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~  490 (888)
T KOG0306|consen  412 CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVP  490 (888)
T ss_pred             cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccC
Confidence            34778899999999999999 79999999999999999999999999999999 999999999999999999752     


Q ss_pred             ceeeeeec-------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          892 DEVKSKLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       892 ~~~~~~l~-------~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      +...+.+.       .-.+.|.|+.+||||++|+.+=-|.+|+||-+++     ..+.-.+.||.-   +|.++.+|||+
T Consensus       491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt-----lKFflsLYGHkL---PV~smDIS~DS  562 (888)
T KOG0306|consen  491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT-----LKFFLSLYGHKL---PVLSMDISPDS  562 (888)
T ss_pred             cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-----eeeeeeeccccc---ceeEEeccCCc
Confidence            11111111       1346799999999999999999999999999998     334556778875   89999999999


Q ss_pred             cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          965 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       965 ~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      +.+++ +.|++|++|-++=|.|.+.+.  +|...|.++.|-|+..++++++.|+.|+-||-+..+.+..+.       ||
T Consensus       563 klivTgSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H  633 (888)
T KOG0306|consen  563 KLIVTGSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GH  633 (888)
T ss_pred             CeEEeccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cc
Confidence            99999 589999999999999999998  899999999999999999999999999999999999999888       99


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ...|+.  ++-+| +|.++++++.|.+|++|.-..
T Consensus       634 ~~ev~c--Lav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  634 HSEVWC--LAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             hheeee--eEEcC-CCCeEEeccCCceeEeeeccC
Confidence            999996  66667 789999999999999998655

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=6.1e-47  Score=389.28  Aligned_cols=540  Identities=16%  Similarity=0.210  Sum_probs=422.9

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      +...-.|...++-..|||.|-| +|+|...|+|+|||....+.+...+|+                 --.++|..++|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence            4455569999999999999996 999999999999999875555444433                 2345899999999


Q ss_pred             CCCeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          431 DGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       431 dg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      |+++|++.+..    |.+.+||  +|..+.   ++.||...|++++|-|.... .++||++|++|.+|+=.--+...++.
T Consensus       114 ds~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r  187 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFR  187 (603)
T ss_pred             CCcEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccc
Confidence            99999987643    3455666  454454   78899999999999998775 89999999999999855455556778


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee---CCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      .|...|.++.|+  +||..+++.+.||.+.+||-.+++....+.   .|.+.|.+++|+||++                 
T Consensus       188 ~HskFV~~VRys--PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~-----------------  248 (603)
T KOG0318|consen  188 EHSKFVNCVRYS--PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDST-----------------  248 (603)
T ss_pred             ccccceeeEEEC--CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCc-----------------
Confidence            899999999976  457899999999999999999999888877   6777788888777776                 


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCC-CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                          .+++++.|.+++|||+.+.+++.++...... .....+-|.  ...|++.+.+|+|.+++..++ ..++.+.+|..
T Consensus       249 ----~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK  321 (603)
T KOG0318|consen  249 ----QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNK  321 (603)
T ss_pred             ----eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheeccccc
Confidence                6999999999999999999999988654321 122345555  668899999999999999999 48899999988


Q ss_pred             cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258          663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  742 (1113)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  742 (1113)
                      .+...                                         ...+++.++.+++.||.|.-|+...+......  
T Consensus       322 ~ITaL-----------------------------------------tv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~--  358 (603)
T KOG0318|consen  322 SITAL-----------------------------------------TVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA--  358 (603)
T ss_pred             ceeEE-----------------------------------------EEcCCCCEEEeeccCceEEEEecCCccccccc--
Confidence            66532                                         23457899999999999999999875543322  


Q ss_pred             cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258          743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  822 (1113)
Q Consensus       743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~  822 (1113)
                          ...|...|.+++.+..+. +++.+-|.++++.++.........                 ..       .......
T Consensus       359 ----g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~  409 (603)
T KOG0318|consen  359 ----GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPK  409 (603)
T ss_pred             ----cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCce
Confidence                245899999999888776 788888889998776432221100                 00       0234455


Q ss_pred             EEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee--eeecc
Q 001258          823 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKG  900 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~--~~l~~  900 (1113)
                      +++..+++.+++.+.++.|.+..-.+  .+.... ..-...+++++| ++..+|+|+.||.|+||.+..+.+.  ..+..
T Consensus       410 ~lav~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~  485 (603)
T KOG0318|consen  410 GLAVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLE  485 (603)
T ss_pred             eEEEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeec
Confidence            89999998888888877777765322  222222 334578999999 9999999999999999999875533  45677


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258          901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  979 (1113)
Q Consensus       901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d  979 (1113)
                      |.++|+++++|||+.+||++...+.|.+||+.+.+...    ....-|.   ..|.+++|+|+.+++|+ +-|..|.||+
T Consensus       486 h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~----~~w~FHt---akI~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  486 HRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT----NRWAFHT---AKINCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             ccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceec----ceeeeee---eeEEEEEeCCCceEEEeccccceEEEEE
Confidence            99999999999999999999999999999999866521    1112233   37999999999999999 5899999999


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      ++..... .....+|...|+.+.|-. ...|++.+.|..|++|++.
T Consensus       559 v~kP~~~-i~iknAH~~gVn~v~wld-e~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  559 VKKPAKH-IIIKNAHLGGVNSVAWLD-ESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             ccChhhh-eEeccccccCceeEEEec-CceEEeccCcceeEEeccc
Confidence            9876655 223358888899999975 4567888899999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-47  Score=409.19  Aligned_cols=512  Identities=13%  Similarity=0.216  Sum_probs=406.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ...+|+|+.-+||.- +||.|-.||.|+||+..++..+.                   .+.||...|+++.|+..|.+||
T Consensus        64 ~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rla  123 (888)
T KOG0306|consen   64 KKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRLA  123 (888)
T ss_pred             ccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceEe
Confidence            446899999999987 69999999999999999876554                   4889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +||.|+.|.|||+-...-+.   .++||.+.|+..-|..+.+  ++++.|.|+.|++||+++..|..+...|.+.+++++
T Consensus       124 SGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~  198 (888)
T KOG0306|consen  124 SGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALV  198 (888)
T ss_pred             ecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEE
Confidence            99999999999998755443   6899999999999998777  899999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCe------e------ee-eCCCCceEEEEEccCCCeEE--------------
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSR------V------DY-EAPGRWCTTMAYSADGTRTY--------------  569 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~------~~-~~~~~~v~~~~~s~~~~~~~--------------  569 (1113)
                      +..    +.+++++.|+.+++|++....-.      .      .+ ....+....+...++++.++              
T Consensus       199 ~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~  274 (888)
T KOG0306|consen  199 LDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIR  274 (888)
T ss_pred             Eec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeec
Confidence            764    58999999999999998321100      0      00 11111222233333332000              


Q ss_pred             -----------------------------------------eccccCceeEEEecCCCC---EEEEEecCCcEEEEECCC
Q 001258          570 -----------------------------------------QGFRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDMDS  605 (1113)
Q Consensus       570 -----------------------------------------~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~~~  605 (1113)
                                                               .-.....+..+++-|.++   .|+. -.++++..|.+..
T Consensus       275 s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~  353 (888)
T KOG0306|consen  275 SKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLEN  353 (888)
T ss_pred             CHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEecc
Confidence                                                     001122344566655543   3333 6788899988765


Q ss_pred             -Cc------eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258          606 -VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  678 (1113)
Q Consensus       606 -~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1113)
                       +.      .+..+...+|...|.+++++.+...+++|+. +.+++|+..+. ++++++.                    
T Consensus       354 s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~-kciRTi~--------------------  411 (888)
T KOG0306|consen  354 SGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTL-KCIRTIT--------------------  411 (888)
T ss_pred             CCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCc-ceeEEec--------------------
Confidence             22      2334555566778999999998887777665 79999999887 5555442                    


Q ss_pred             hhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEE
Q 001258          679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  758 (1113)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  758 (1113)
                                                                                              ...+.+..
T Consensus       412 ------------------------------------------------------------------------~~y~l~~~  419 (888)
T KOG0306|consen  412 ------------------------------------------------------------------------CGYILASK  419 (888)
T ss_pred             ------------------------------------------------------------------------cccEEEEE
Confidence                                                                                    23567888


Q ss_pred             EeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-
Q 001258          759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-  837 (1113)
Q Consensus       759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-  837 (1113)
                      |-|.+++++.|..+|.+.+||+...                      .++.. ..  .|.+.|.+++.+||++.+++|+ 
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~----------------------~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~sa  474 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASA----------------------SLVET-IR--AHDGAIWSISLSPDNKGFVTGSA  474 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehh----------------------hhhhh-hh--ccccceeeeeecCCCCceEEecC
Confidence            9999999999999999999987532                      11111 11  3999999999999999999999 


Q ss_pred             CCeEEEEECCC-----Ccee--------eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258          838 GGKISLFNMMT-----FKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       838 dg~i~vwd~~~-----~~~~--------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                      |.+|++||..-     +...        ++++ -...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-+
T Consensus       475 DktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP  552 (888)
T KOG0306|consen  475 DKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP  552 (888)
T ss_pred             CcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccc
Confidence            99999999741     1111        1222 345799999999 9999999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcc
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL  983 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~  983 (1113)
                      |.|+..|||++.++|||.|.+|+||-++-|.|.++     .-+|.   ..|.++.|-|+...+.+ |.|+.|+-||....
T Consensus       553 V~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS-----~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kF  624 (888)
T KOG0306|consen  553 VLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS-----FFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKF  624 (888)
T ss_pred             eeEEeccCCcCeEEeccCCCceEEeccccchhhhh-----hhccc---CceeEEEEcccceeEEEecCcceEEeechhhh
Confidence            99999999999999999999999999999876443     33343   37899999998888877 69999999999999


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                      ++++.+.  +|...|.|++.+|+|.++++++.|.+|++|.-....+
T Consensus       625 e~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~  668 (888)
T KOG0306|consen  625 EEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEIL  668 (888)
T ss_pred             hhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcce
Confidence            9999887  8999999999999999999999999999998765433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-49  Score=393.18  Aligned_cols=367  Identities=20%  Similarity=0.279  Sum_probs=290.5

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.||.++|.|++|||+|+.||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW  184 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence            478999999999999999999999999999999999977554   8999999999999999999  79999999999999


Q ss_pred             eCCCCcee-eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          495 DATNGAKQ-YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       495 d~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      |.++|+++ +.|.+|...|++++|.|-.    +.                                   |          
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~h----l~-----------------------------------p----------  215 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLH----LV-----------------------------------P----------  215 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccc----cC-----------------------------------C----------
Confidence            99998876 5899999999999987642    11                                   1          


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                                 ..++|++++.||.|+|||+..+.++..+.+|  +..|+|+.|.-+| ++++|+.|++|++|+..+| .+
T Consensus       216 -----------~~r~las~skDg~vrIWd~~~~~~~~~lsgH--T~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG-~~  280 (480)
T KOG0271|consen  216 -----------PCRRLASSSKDGSVRIWDTKLGTCVRTLSGH--TASVTCVRWGGEG-LIYSGSQDRTIKVWRALDG-KL  280 (480)
T ss_pred             -----------CccceecccCCCCEEEEEccCceEEEEeccC--ccceEEEEEcCCc-eEEecCCCceEEEEEccch-hH
Confidence                       1124888999999999999999999998876  6689999998765 8999999999999999988 77


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      .+.+.+|...                                                                      
T Consensus       281 ~r~lkGHahw----------------------------------------------------------------------  290 (480)
T KOG0271|consen  281 CRELKGHAHW----------------------------------------------------------------------  290 (480)
T ss_pred             HHhhcccchh----------------------------------------------------------------------
Confidence            7777776543                                                                      


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                          |..++++.+-- |-++.-|              +.+......        + ......+ 
T Consensus       291 --------------------vN~lalsTdy~-LRtgaf~--------------~t~~~~~~~--------s-e~~~~Al-  325 (480)
T KOG0271|consen  291 --------------------VNHLALSTDYV-LRTGAFD--------------HTGRKPKSF--------S-EEQKKAL-  325 (480)
T ss_pred             --------------------eeeeeccchhh-hhccccc--------------cccccCCCh--------H-HHHHHHH-
Confidence                                33333332211 1111111              100000000        0 0000000 


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                            .-+..+.-..+..|++|+ |.++.+|+-. +.+++....+|..-|+.+.||| |++++|+++-|..|++||..+
T Consensus       326 ------~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~t  398 (480)
T KOG0271|consen  326 ------ERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGRT  398 (480)
T ss_pred             ------HHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCCC
Confidence                  001112223457899999 7899999976 4457788899999999999999 999999999999999999999


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  971 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~  971 (1113)
                      |+.+..|+||-+.|+.++|+.|.++|+|||.|.++++|++.+.+.     ..                            
T Consensus       399 Gk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-----~~----------------------------  445 (480)
T KOG0271|consen  399 GKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-----KQ----------------------------  445 (480)
T ss_pred             cchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-----cc----------------------------
Confidence            999999999999999999999999999999999999999988321     11                            


Q ss_pred             CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                                        ...+|...|.++.|+|||..+++|+.|..+++|.
T Consensus       446 ------------------DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  446 ------------------DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ------------------cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                              1127788899999999999999999999888885

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.4e-45  Score=390.10  Aligned_cols=546  Identities=15%  Similarity=0.238  Sum_probs=422.2

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1113)
                      -.+.|++||.. +++ ...+.|.++|+.+++...                   +.-.+...|.+++.||+|.+|++....
T Consensus        18 Gnl~ft~dG~s-viS-PvGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~   76 (893)
T KOG0291|consen   18 GNLVFTKDGNS-VIS-PVGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER   76 (893)
T ss_pred             CcEEECCCCCE-EEe-ccCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence            34789999986 443 457899999998876543                   233567789999999999999999999


Q ss_pred             CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--------eeeEeeccCcCEE
Q 001258          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVY  513 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--------~~~~~~~h~~~v~  513 (1113)
                      |...+-++.....++   .+ .-+.+|.|+.|||||+  ++|.|. .+.+.||......        ..+++.+|...|.
T Consensus        77 g~~~lvs~~~r~Vlh---~f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~  149 (893)
T KOG0291|consen   77 GRALLVSLLSRSVLH---RF-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT  149 (893)
T ss_pred             CcEEEEecccceeeE---EE-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence            998888887765444   22 2356899999999999  455544 5789999865422        2356779999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      ++.|+.+  ..+|++|+.|-++++|+++..+.  ...+.+|...|.+.-|..+..                     .+++
T Consensus       150 si~Ws~D--Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~---------------------~l~t  206 (893)
T KOG0291|consen  150 SIDWSDD--SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSL---------------------DLYT  206 (893)
T ss_pred             EEEeccC--CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcc---------------------eEEE
Confidence            9998754  47999999999999999987666  334555666666665555544                     5889


Q ss_pred             EecCCcEEEEECCC-----------------------Cce-----E----EEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258          592 AGDDFSIKFWDMDS-----------------------VQL-----L----TSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~-----------------------~~~-----~----~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  639 (1113)
                      .+.||.+.+|....                       ++.     .    ...-.......|++.+|++..+.|++|-..
T Consensus       207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss  286 (893)
T KOG0291|consen  207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS  286 (893)
T ss_pred             EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence            99999999998761                       110     0    001111122467888888888888888888


Q ss_pred             CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  719 (1113)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  719 (1113)
                      |.+.+|.+.+- .+++.+.                                                             
T Consensus       287 G~f~LyelP~f-~lih~LS-------------------------------------------------------------  304 (893)
T KOG0291|consen  287 GEFGLYELPDF-NLIHSLS-------------------------------------------------------------  304 (893)
T ss_pred             CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence            88888877554 3332221                                                             


Q ss_pred             ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeeeecCe
Q 001258          720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ  798 (1113)
Q Consensus       720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~  798 (1113)
                                                   ....+|..++|+..|.+|+.++.. |.+.||+++...+             
T Consensus       305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-------------  342 (893)
T KOG0291|consen  305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-------------  342 (893)
T ss_pred             -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence                                         134678999999999999998887 9999999875432             


Q ss_pred             ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258          799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  877 (1113)
Q Consensus       799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~  877 (1113)
                                  .++.++|...+.+++++|||+++|+|+ ||+|+|||..++-|..+|..|...|+.+.|+. .++.+++
T Consensus       343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls  409 (893)
T KOG0291|consen  343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS  409 (893)
T ss_pred             ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence                        123345999999999999999999999 89999999999999999999999999999999 8999999


Q ss_pred             EecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccccccCCCCCCCCCCC
Q 001258          878 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  955 (1113)
Q Consensus       878 g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L~s~s~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  955 (1113)
                      .+-||+|+.||+..++..+++.... -...+++..|.|..++.|+.|. .|++|++++|+     .+.++.||..   +|
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHEg---PV  481 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHEG---PV  481 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCCC---cc
Confidence            9999999999999999888887543 3456788888899999998885 69999999965     5788888885   99


Q ss_pred             ceEEEccCCcEEEE-EcCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          956 TRVQFHQDQIHFLV-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       956 ~~~~~spdg~~l~~-~~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      .+++|+|+|..|++ +-|++|++||+-... .+.++   .+...++.++|+|||+-|+++..||.|.+||...+.....+
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999999999999 589999999985442 22222   34778999999999999999999999999999877666444


Q ss_pred             CCCcccCCCc-------------ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC--ccccCCCCC
Q 001258         1034 NPSAYLPAGV-------------SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPV 1089 (1113)
Q Consensus      1034 ~~~~~~~~gh-------------~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~ 1089 (1113)
                      ....-+..|.             .-..+  .+.+++ ||..+++|+..+.|+++++.++-  .+|++....
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ft--ti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~  626 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFT--TICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISDNR  626 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceE--EEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecccc
Confidence            3211111110             11122  577777 89999999999999999999887  556655543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=2.9e-46  Score=395.59  Aligned_cols=636  Identities=15%  Similarity=0.173  Sum_probs=433.7

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe-
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-  439 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-  439 (1113)
                      -..++.+|... ++|. -....|.+||+...++-+                   ++..|..+++|++||++|+|+|+|- 
T Consensus        40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence            34566666655 2332 335678899987655433                   5778888999999999999999984 


Q ss_pred             -CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          440 -SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       440 -~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                       ....++||++.....+.   +|..|+-.|+|++|+|.++  |+++.+.  |-.|.+||++.......-+ -...|.+++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEE
Confidence             66779999999877665   7889999999999999999  6777664  5578889887544333222 345678788


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeee-eeCCCC----------------------ceEEEEEccCCCeE-----
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGR----------------------WCTTMAYSADGTRT-----  568 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~----------------------~v~~~~~s~~~~~~-----  568 (1113)
                      |  +.+|.|+++.+ ...|++|.++...+... ++..+.                      .-...+++..|...     
T Consensus       173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsR  249 (1080)
T KOG1408|consen  173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSR  249 (1080)
T ss_pred             E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechh
Confidence            5  46778998876 67899999876552210 111000                      00223333333211     


Q ss_pred             --E---eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc----------------------CCCCCCc
Q 001258          569 --Y---QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA----------------------DGGLPAS  621 (1113)
Q Consensus       569 --~---~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~~~v  621 (1113)
                        +   ...+.....+++.  ...++++|+.+|.|++|+..+.....++..                      .......
T Consensus       250 RLLDKWVqcRTTnAnCIcV--s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~  327 (1080)
T KOG1408|consen  250 RLLDKWVQCRTTNANCICV--SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA  327 (1080)
T ss_pred             hhhhhhhhhhccccceeee--ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence              0   0111122233443  456899999999999999876554433321                      1112234


Q ss_pred             CeEEECCCCCEEEEEECCCcEEEEEcCCCccceec--cccccccccccCCCCCCCcccchhhhhhhhccccccccccccc
Q 001258          622 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT--FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  699 (1113)
Q Consensus       622 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1113)
                      ..+.|++....|.+..+|+.+++||+.+-.+.-+.  +-.|+.-+     +.+                        ...
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ci-----W~V------------------------e~~  378 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACI-----WDV------------------------ENL  378 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeecccee-----eee------------------------ccc
Confidence            57889999999999999999999999876333221  11121111     111                        111


Q ss_pred             ccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE-EE
Q 001258          700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LW  778 (1113)
Q Consensus       700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~-vw  778 (1113)
                      +.....+...+.|.+ -+++++.|++|++|++.........+.              -.++.+-..++  ..|+... +.
T Consensus       379 p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR--------------Nils~~l~ki~--y~d~~~q~~~  441 (1080)
T KOG1408|consen  379 PCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR--------------NILSANLSKIP--YEDSTQQIMH  441 (1080)
T ss_pred             cccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeec--------------ccchhhhhcCc--cccCchhhhh
Confidence            111223334444444 389999999999999986322222110              01111110011  1111100 00


Q ss_pred             EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC
Q 001258          779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  857 (1113)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~  857 (1113)
                      |...               .++|-....     .  ......+++++++|+|++||+|. .|+|+||++...+....++.
T Consensus       442 d~~~---------------~~fdka~~s-----~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA  499 (1080)
T KOG1408|consen  442 DASA---------------GIFDKALVS-----T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEA  499 (1080)
T ss_pred             hccC---------------Ccccccchh-----h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheec
Confidence            1000               011110000     1  11567799999999999999998 79999999999999999999


Q ss_pred             CCCCeeEEEEecC--CCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEEEEEcCCC--CEEEEEeCCCcEEEEeCC
Q 001258          858 PPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       858 ~~~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~L~s~s~D~~v~iwd~~  932 (1113)
                      |...|.|+.||-.  ..++||+++.|.-|+|||+.. ..+++++.+|+..|+++.|.-.|  ..+++++.|+.|++--.+
T Consensus       500 HesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~q  579 (1080)
T KOG1408|consen  500 HESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQ  579 (1080)
T ss_pred             ccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhc
Confidence            9999999999852  357999999999999999964 57789999999999999998777  789999999977644332


Q ss_pred             CCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEE
Q 001258          933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l 1010 (1113)
                      ...   ...+-....+......++.++..|..+++++ +.|+.|+||++..|+..+.|.. ++|.+....+...|.|-||
T Consensus       580 k~~---~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~  656 (1080)
T KOG1408|consen  580 KAS---SGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYL  656 (1080)
T ss_pred             ccc---CceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEE
Confidence            111   1111111112222246789999999999999 7999999999999999999985 3567888999999999999


Q ss_pred             EEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC-----ccccC
Q 001258         1011 YACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-----GKWGV 1085 (1113)
Q Consensus      1011 ~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-----~~~~~ 1085 (1113)
                      ++.+.|+++.++|+.+|+++++..       ||+..|+.  +.|.+ |.+.|++.+.||+|+||.++...     .....
T Consensus       657 atScsdktl~~~Df~sgEcvA~m~-------GHsE~VTG--~kF~n-DCkHlISvsgDgCIFvW~lp~~mii~m~~r~~~  726 (1080)
T KOG1408|consen  657 ATSCSDKTLCFVDFVSGECVAQMT-------GHSEAVTG--VKFLN-DCKHLISVSGDGCIFVWKLPLTMIIRMVNRNGR  726 (1080)
T ss_pred             EEeecCCceEEEEeccchhhhhhc-------Ccchheee--eeecc-cchhheeecCCceEEEEECchhHhHHHHHHhhH
Confidence            999999999999999999999987       99999997  78888 77899999999999999998643     22233


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCC
Q 001258         1086 PPPVDNGSTSSMPATPPVGGSGSD 1109 (1113)
Q Consensus      1086 ~~~~~~~~~~~~~~~~~~~~~~~~ 1109 (1113)
                      .+-...+..-..|..|.+++.+++
T Consensus       727 lr~rq~~~~~~~pl~p~~p~d~~~  750 (1080)
T KOG1408|consen  727 LRVRQLEKFIAVPLEPDNPNDASC  750 (1080)
T ss_pred             HHHHhccCCcCCCCCCCCCCCCcc
Confidence            344456666666667766666554

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1e-40  Score=353.65  Aligned_cols=551  Identities=13%  Similarity=0.139  Sum_probs=374.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      |..+++|++||++|+| +|+|-  ..-.++||+++....+.                   .+..|.-.|+|++|||.++|
T Consensus        77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-------------------EfvdHKY~vtcvaFsp~~ky  136 (1080)
T KOG1408|consen   77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-------------------EFVDHKYNVTCVAFSPGNKY  136 (1080)
T ss_pred             cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-------------------hhhhccccceeeeecCCCcE
Confidence            8899999999999996 99986  34579999999877655                   37889999999999999999


Q ss_pred             EEEEeC--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE--------
Q 001258          435 FGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--------  504 (1113)
Q Consensus       435 las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--------  504 (1113)
                      +++.+.  |..|.+||++.+....    -..-...|..++|+.||.  |++|.+ ...|++|.++.++....        
T Consensus       137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs  209 (1080)
T KOG1408|consen  137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS  209 (1080)
T ss_pred             EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence            998764  5678899887654332    223456899999999999  788887 57899999886652110        


Q ss_pred             -----e------------------------ecc-----------------CcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          505 -----F------------------------EGH-----------------EAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       505 -----~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                           +                        .||                 +....|++++  .  .+|++|+.+|.|++|
T Consensus       210 ~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~--r~I~cgCa~g~vrlF  285 (1080)
T KOG1408|consen  210 YFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--S--RLIACGCAKGMVRLF  285 (1080)
T ss_pred             hhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--c--ceEEEeeccceeeec
Confidence                 0                        011                 1112334432  2  689999999999999


Q ss_pred             EcCCCCCeeeeeCCCC---ceEEEEEccCCCeEEeccccC---ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258          539 LYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  612 (1113)
Q Consensus       539 d~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  612 (1113)
                      +..+..-..+++....   .+..+.   .-..+..+....   ..-.+.|++...+|.+...|..++|||++.-..+...
T Consensus       286 np~tL~y~~Tlpr~halg~d~a~~~---q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~  362 (1080)
T KOG1408|consen  286 NPETLDYAGTLPRSHALGSDTANLS---QPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKC  362 (1080)
T ss_pred             Ccchhhhccccccccccccchhhcc---cccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccce
Confidence            8877655544432211   111111   011122222211   2234678889999999999999999999874322111


Q ss_pred             -ccCCCCCCcCeEEECCC-----------CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchh
Q 001258          613 -DADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA  680 (1113)
Q Consensus       613 -~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1113)
                       ..--|...|+.+.--|-           ...+++++.|++||+|++..+. --..+......                 
T Consensus       363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils-----------------  424 (1080)
T KOG1408|consen  363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILS-----------------  424 (1080)
T ss_pred             eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccch-----------------
Confidence             11112223444433331           2358999999999999987631 11111000000                 


Q ss_pred             hhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEe
Q 001258          681 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT  760 (1113)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  760 (1113)
                                                       .+.+-.-..|++..+..........+ .  ..........+.+++++
T Consensus       425 ---------------------------------~~l~ki~y~d~~~q~~~d~~~~~fdk-a--~~s~~d~r~G~R~~~vS  468 (1080)
T KOG1408|consen  425 ---------------------------------ANLSKIPYEDSTQQIMHDASAGIFDK-A--LVSTCDSRFGFRALAVS  468 (1080)
T ss_pred             ---------------------------------hhhhcCccccCchhhhhhccCCcccc-c--chhhcCcccceEEEEEC
Confidence                                             00000000011110000000000000 0  00001245678999999


Q ss_pred             CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec---CCCEEEEEe
Q 001258          761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS  837 (1113)
Q Consensus       761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s  837 (1113)
                      |+|+.|++|..-|.++||+++.-..                      +   ..-..|...|.|+.|+.   ..++||+++
T Consensus       469 p~gqhLAsGDr~GnlrVy~Lq~l~~----------------------~---~~~eAHesEilcLeyS~p~~~~kLLASas  523 (1080)
T KOG1408|consen  469 PDGQHLASGDRGGNLRVYDLQELEY----------------------T---CFMEAHESEILCLEYSFPVLTNKLLASAS  523 (1080)
T ss_pred             CCcceecccCccCceEEEEehhhhh----------------------h---hheecccceeEEEeecCchhhhHhhhhcc
Confidence            9999999999999999999863211                      0   11123999999999984   357899998


Q ss_pred             -CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCC-cEEEEEecCCcEEEEEcccceeeeeecc-----cccCeEEEE
Q 001258          838 -GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLA  909 (1113)
Q Consensus       838 -dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~l~  909 (1113)
                       |.-|.|||+. +...++++.+|...|+++.|...++ ..+++++.|..|.+--.....-...+.-     ....+..++
T Consensus       524 rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~  603 (1080)
T KOG1408|consen  524 RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA  603 (1080)
T ss_pred             CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence             8899999996 4566788999999999999987332 5677888888776533322111112211     124688999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeec
Q 001258          910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQ  988 (1113)
Q Consensus       910 ~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~  988 (1113)
                      ..|..+++++++.|..|+||++++++..+     .+.+.....+....+...|.|.|+++ +.|+++.++|.-+++|+.+
T Consensus       604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k-----~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~  678 (1080)
T KOG1408|consen  604 VDPTSKLVVTVCQDRNIRIFDIESGKQVK-----SFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ  678 (1080)
T ss_pred             eCCCcceEEEEecccceEEEeccccceee-----eecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence            99999999999999999999999977533     33333333356788999999999999 6999999999999999999


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      ..  +|...|+.+.|++|.+.|++++.||.|.||.+...
T Consensus       679 m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  679 MT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             hc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            88  99999999999999999999999999999999754

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-40  Score=337.87  Aligned_cols=357  Identities=18%  Similarity=0.319  Sum_probs=280.2

Q ss_pred             CCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258          346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1113)
Q Consensus       346 ~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  425 (1113)
                      ++|+...+.++|..+|.+.+|+|-..-++++|+.|-+.++|++.........   ..++..+....-  .-...+..|++
T Consensus       166 ~I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~--~s~~~nkdVT~  240 (524)
T KOG0273|consen  166 EIPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGG--KSVPSNKDVTS  240 (524)
T ss_pred             cccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhc--ccCCccCCcce
Confidence            4577777888899999999999988767999999999999998741111000   000000000000  01112357999


Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  505 (1113)
                      ++|+.+|.+||+|+.||.++||+...+. +.   +|..|+++|.++.|+.+|.  +|++++.|+++.+||..+|.....+
T Consensus       241 L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q~f  314 (524)
T KOG0273|consen  241 LDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQQF  314 (524)
T ss_pred             EEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEEee
Confidence            9999999999999999999999987653 33   6889999999999999999  8999999999999999999988888


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      .-|..+-..+.|-..   ..                                                            
T Consensus       315 ~~~s~~~lDVdW~~~---~~------------------------------------------------------------  331 (524)
T KOG0273|consen  315 EFHSAPALDVDWQSN---DE------------------------------------------------------------  331 (524)
T ss_pred             eeccCCccceEEecC---ce------------------------------------------------------------
Confidence            877776444444211   12                                                            


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1113)
                         +++.+.|+.|+++.+...+++.++.+|  ...|.++.|+|.|.+|++++.|++++||+.... .....+        
T Consensus       332 ---F~ts~td~~i~V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l--------  397 (524)
T KOG0273|consen  332 ---FATSSTDGCIHVCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL--------  397 (524)
T ss_pred             ---EeecCCCceEEEEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--------
Confidence               566666777777777777788888775  558999999999999999999999999987655 222222        


Q ss_pred             ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258          666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  745 (1113)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  745 (1113)
                                                                                                      
T Consensus       398 --------------------------------------------------------------------------------  397 (524)
T KOG0273|consen  398 --------------------------------------------------------------------------------  397 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258          746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  825 (1113)
Q Consensus       746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~  825 (1113)
                        ..|...|..+.++|.|..                                 .|                +.       
T Consensus       398 --~~Hskei~t~~wsp~g~v---------------------------------~~----------------n~-------  419 (524)
T KOG0273|consen  398 --QAHSKEIYTIKWSPTGPV---------------------------------TS----------------NP-------  419 (524)
T ss_pred             --hhhccceeeEeecCCCCc---------------------------------cC----------------CC-------
Confidence              126677888888888750                                 00                00       


Q ss_pred             EecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258          826 LSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       826 ~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                        ..+..+++++ |++|++||+..+.++..|..|..+|.+++|+| +|+++|+|+.||.|.||++++++..+...+- +.
T Consensus       420 --~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~-~~  495 (524)
T KOG0273|consen  420 --NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSYQGT-GG  495 (524)
T ss_pred             --cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEeecCC-Ce
Confidence              1344566666 99999999999999999999999999999999 9999999999999999999999999888754 55


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      |..|+|+.+|..|..+-.|+.+++.|+.
T Consensus       496 Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  496 IFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            9999999999999999999999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=3.2e-37  Score=334.84  Aligned_cols=589  Identities=15%  Similarity=0.161  Sum_probs=431.9

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +.|- ..|..-|..++++.+.+....+||.++-..+..                   -..+...|+|++=..  .+..++
T Consensus        35 n~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~--~~vy~A   92 (910)
T KOG1539|consen   35 NGVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDK--DYVYVA   92 (910)
T ss_pred             CCCc-eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecC--ceEEEe
Confidence            3444 667777777889999999999999987666542                   345677899998654  444444


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-cee----eEeeccCcCEE
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ----YIFEGHEAPVY  513 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~----~~~~~h~~~v~  513 (1113)
                      +. ..|.+|.  .|+.++.  .+.+|...|.-+.-  -|.  .++++..++.+.||+..++ ...    ..++...+.|+
T Consensus        93 ~g-~~i~~~~--rgk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~It  163 (910)
T KOG1539|consen   93 SG-NKIYAYA--RGKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFIT  163 (910)
T ss_pred             cC-cEEEEEE--ccceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCcee
Confidence            33 3466664  3433332  56678877777663  466  6889999999999998874 221    12233333488


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      ++. ||+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=.                     .++.|.
T Consensus       164 al~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLD---------------------VVaiG~  221 (910)
T KOG1539|consen  164 ALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALD---------------------VVAIGL  221 (910)
T ss_pred             eEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcce---------------------EEEEec
Confidence            775 4554445789999999999999999999999998888888887776443                     488899


Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCE-EEEEECCCcEEEEEcCCCccceeccc-cccccccccCCCC
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFE-NLAYDASRTSENS  671 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~  671 (1113)
                      .+|+|.++|++.++.+..++...  +.|++++|.-||+. +++|+..|.+.+||+... +.....+ .|...+       
T Consensus       222 ~~G~ViifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~k-kl~~v~~nah~~sv-------  291 (910)
T KOG1539|consen  222 ENGTVIIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKK-KLINVTRNAHYGSV-------  291 (910)
T ss_pred             cCceEEEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCC-eeeeeeeccccCCc-------
Confidence            99999999999999999998763  47999999999875 566666799999999877 4433332 332211       


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                        ....+.+....+++.+.|+.+++|-.+.+...  .+.+... .+|.
T Consensus       292 ----------------------------------~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~--pR~LR~R-~GHs  334 (910)
T KOG1539|consen  292 ----------------------------------TGATFLPGEPVLVTAGADNSLKVWVFDSGDGV--PRLLRSR-GGHS  334 (910)
T ss_pred             ----------------------------------ccceecCCCceEeeccCCCceeEEEeeCCCCc--chheeec-cCCC
Confidence                                              12344567788999999999999988754433  2222222 5799


Q ss_pred             CceEEEEEe-CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258          752 TKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  830 (1113)
Q Consensus       752 ~~i~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~  830 (1113)
                      .+..++.|- .+|..++.++.|++.+.+++....++..-..       +.....+..+.........-.+|..+++....
T Consensus       335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~R  407 (910)
T KOG1539|consen  335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAR  407 (910)
T ss_pred             CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccch
Confidence            999999997 7899999999999999888765433221111       11111111000000000022345666654321


Q ss_pred             ----CEEEEEe--CCeEEEEECCCCce-eeeec-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258          831 ----SYVMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  898 (1113)
Q Consensus       831 ----~~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l  898 (1113)
                          .-++++.  +..++.|+...... ...+.     .....+++++.++ .|++.+.|...|.|-+|++.+|-....+
T Consensus       408 E~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf  486 (910)
T KOG1539|consen  408 EKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSF  486 (910)
T ss_pred             hhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeeccc
Confidence                1244443  57799999986544 23332     2346799999999 9999999999999999999999888888


Q ss_pred             ---cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCe
Q 001258          899 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQ  974 (1113)
Q Consensus       899 ---~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~  974 (1113)
                         ..|.++|++++...-++.+++++.+|-+++||..+.....    ...-+     ..+..+..+.....+++ ..|-.
T Consensus       487 ~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~  557 (910)
T KOG1539|consen  487 GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFS  557 (910)
T ss_pred             ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCcee
Confidence               5899999999998888999999999999999998854211    11112     35788888888888888 58889


Q ss_pred             EEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258          975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
                      |+++|..+.+.++.|.  +|+..|++++|||||++|++++.|++|++||+.++.++..+..          ...++.++|
T Consensus       558 I~vvD~~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v----------d~~~~sls~  625 (910)
T KOG1539|consen  558 IRVVDVVTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV----------DSPCTSLSF  625 (910)
T ss_pred             EEEEEchhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec----------CCcceeeEE
Confidence            9999999999999998  8999999999999999999999999999999999999987652          223446999


Q ss_pred             eCCCCCEEEEEeCC-CcEEEEecc
Q 001258         1055 HPQEPNEFALGLSD-GGVHVFEPL 1077 (1113)
Q Consensus      1055 ~p~d~~~l~s~~~D-g~v~vW~~~ 1077 (1113)
                      +| +|++||+...| ..|++|.=.
T Consensus       626 SP-ngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  626 SP-NGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             CC-CCCEEEEEEecCceEEEEEch
Confidence            99 78999999999 789999643

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.8e-40  Score=333.24  Aligned_cols=284  Identities=19%  Similarity=0.300  Sum_probs=259.4

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC--C
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G  432 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g  432 (1113)
                      ++.+.+|..+.||+|++ +||||+-+|.++||+..+...+.                   +|.||.+.|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence            45678999999999999 59999999999999999887665                   58999999999999996  6


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ..+|+|+.||++++|++.+...+.   .+.+|...|..++|.|+|+  +|+|++.|.+-++||++++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999877665   7899999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .+++|++  ||.+++|||.|..-++||++++.++..+.+|...|.++.|+|+|.                     .+++|
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg  363 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG  363 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence            9999875  568999999999999999999999999999999999999998886                     69999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      +.|++++|||++..+.+..+..|  ...|+.+.|+| .|.+|++++.|++++||...+. .+++.+.             
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa-------------  427 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA-------------  427 (459)
T ss_pred             CCCCcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence            99999999999999998888877  55799999999 8899999999999999988777 5555443             


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                                                                   +|.
T Consensus       428 -----------------------------------------------------------------------------GHe  430 (459)
T KOG0272|consen  428 -----------------------------------------------------------------------------GHE  430 (459)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         377


Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                      +.|.++.+++|+..+++++.|.++++|.
T Consensus       431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  431 GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceEEEEeccCCceEEEeccCceeeecc
Confidence            8899999999999999999999999984

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-40  Score=333.79  Aligned_cols=285  Identities=18%  Similarity=0.269  Sum_probs=260.1

Q ss_pred             cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       463 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      +-..+|..+.|+.|++  .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++.+
T Consensus       173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            4567899999999999  89999999999999999999999999999999999999986567899999999999999999


Q ss_pred             CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcC
Q 001258          543 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  622 (1113)
Q Consensus       543 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  622 (1113)
                      ...+..+.+|...|..++|.|+|+                     +|++++.|.+-++||+.++..+....+|  ...|.
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG~---------------------~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~  307 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSGK---------------------FLGTASFDSTWRLWDLETKSELLLQEGH--SKGVF  307 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCCc---------------------eeeecccccchhhcccccchhhHhhccc--ccccc
Confidence            888889998888888777777776                     7999999999999999999887776655  56899


Q ss_pred             eEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccC
Q 001258          623 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  702 (1113)
Q Consensus       623 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1113)
                      +++|.|||.++++|+.|..-+|||+.++ .++-.+                                             
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L---------------------------------------------  341 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFL---------------------------------------------  341 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccC-cEEEEe---------------------------------------------
Confidence            9999999999999999999999999888 222111                                             


Q ss_pred             CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                                                                                                      
T Consensus       342 --------------------------------------------------------------------------------  341 (459)
T KOG0272|consen  342 --------------------------------------------------------------------------------  341 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCC
Q 001258          783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA  861 (1113)
Q Consensus       783 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~  861 (1113)
                                                    .  +|...|.+++|+|+|-.||+|+ |++++|||++..+.+.++.+|..-
T Consensus       342 ------------------------------~--gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  342 ------------------------------A--GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             ------------------------------c--ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence                                          1  1777888899999999999998 999999999999999999999999


Q ss_pred             eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       862 i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      |+.|.|+|..|.+|++++.|++++||...++.+++.+.||.+.|.++..++|+.+++|++.|.++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999998899999999999999999999999999999999999999999999999999999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.1e-37  Score=328.20  Aligned_cols=587  Identities=15%  Similarity=0.191  Sum_probs=401.6

Q ss_pred             eeEec-cCCCCcEEEEEcCCCC---eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          351 VTRTL-NQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       351 ~~~~~-~h~~~V~~~~~spdg~---~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      +..++ +|..+|+|+.|-|+.+   + +++|+.||.|++|.+.........                 .+.+|...+  +
T Consensus        46 i~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~~--~  105 (764)
T KOG1063|consen   46 IVTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKEC--V  105 (764)
T ss_pred             eEEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcceeE--E
Confidence            34444 4999999999999887   5 899999999999999843332211                 355665554  4


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccC--CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--cee
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG--GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQ  502 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~--~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~  502 (1113)
                      +++.......+...|+++.+||.+..+.. ....++--.+  --.|+++.++.+.++++.|+.+..|.++.-..+  +.+
T Consensus       106 cv~a~~~~~~~~~ad~~v~vw~~~~~e~~-~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v  184 (764)
T KOG1063|consen  106 CVVARSSVMTCKAADGTVSVWDKQQDEVF-LLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARV  184 (764)
T ss_pred             EEEeeeeEEEeeccCceEEEeecCCCcee-eehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEE
Confidence            44433333333368999999999655511 1112222222  235677778666657888888888999876544  455


Q ss_pred             eEeeccCcCEEEEeeeecCC-ceEEEEEecCCcEEEEEcCCCCCeeee------e-CCCCceEEE----EEccCCCeEEe
Q 001258          503 YIFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDY------E-APGRWCTTM----AYSADGTRTYQ  570 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~------~-~~~~~v~~~----~~s~~~~~~~~  570 (1113)
                      ..+.||.+.|.+++|..... ..+|+++|.|..||+|.+.-.......      . ....++..+    .+--.-..++.
T Consensus       185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~  264 (764)
T KOG1063|consen  185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM  264 (764)
T ss_pred             EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence            68899999999999876544 568999999999999987643311100      0 000111100    00000012233


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc--eEEEEc--cC-CCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSID--AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~--~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                      ||.+ -+..+.|+|.+..|++++.|.++.+|...+..  .+....  .- +........-|+|+++.+++-+..|..++|
T Consensus       265 GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlW  343 (764)
T KOG1063|consen  265 GHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLW  343 (764)
T ss_pred             Cccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEE
Confidence            4433 67778888888889999999999999876642  222222  11 122346789999999999999999999999


Q ss_pred             EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258          646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  725 (1113)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  725 (1113)
                      ...+..                                                                          
T Consensus       344 kt~d~~--------------------------------------------------------------------------  349 (764)
T KOG1063|consen  344 KTKDKT--------------------------------------------------------------------------  349 (764)
T ss_pred             eccCcc--------------------------------------------------------------------------
Confidence            732220                                                                          


Q ss_pred             eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258          726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  805 (1113)
Q Consensus       726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g  805 (1113)
                        .|....            ...+|...|++++++|.|.++++.+.|.+-|+|..-..+..             |.-   
T Consensus       350 --~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~-------------wHE---  399 (764)
T KOG1063|consen  350 --FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQE-------------WHE---  399 (764)
T ss_pred             --ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeecccccccc-------------eee---
Confidence              111100            00348899999999999999999999999998754311110             110   


Q ss_pred             cccccccCCCCCCCCccEEEEecCCCEEEEEeC-CeEEEEECC-------------------------------------
Q 001258          806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMM-------------------------------------  847 (1113)
Q Consensus       806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~-------------------------------------  847 (1113)
                        +   .+.+-|...++|++|-+....+++|.| .-+|+|+..                                     
T Consensus       400 --i---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~  474 (764)
T KOG1063|consen  400 --I---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF  474 (764)
T ss_pred             --e---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence              0   111227788888888775556666664 557888731                                     


Q ss_pred             ------CCce---------------------------------eeeecCCCCCeeEEEEecCCCcEEEEEecC-----Cc
Q 001258          848 ------TFKT---------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SS  883 (1113)
Q Consensus       848 ------~~~~---------------------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~  883 (1113)
                            +|..                                 ++.+.+|...|.+++.+| +++++|+++..     ..
T Consensus       475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAv  553 (764)
T KOG1063|consen  475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAV  553 (764)
T ss_pred             cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceE
Confidence                  0000                                 012346778899999999 99999999854     37


Q ss_pred             EEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          884 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       884 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      |++|+..+....+.+.+|+-.|+.|+|||||++|+++|.|+++.+|..........+. .....|.   .-|..+.|+|+
T Consensus       554 I~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f-a~~k~Ht---RIIWdcsW~pd  629 (764)
T KOG1063|consen  554 IRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF-ACLKAHT---RIIWDCSWSPD  629 (764)
T ss_pred             EEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh-ccccccc---eEEEEcccCcc
Confidence            9999999998889999999999999999999999999999999999986654433322 2233343   36889999999


Q ss_pred             CcEEEE-EcCCeEEEEeCCcc--ceeeccccCCCCCCeeEEEECC-----CCCEEEEEeCCCcEEEEecCC-------Cc
Q 001258          964 QIHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAAN-------LK 1028 (1113)
Q Consensus       964 g~~l~~-~~d~~v~v~d~~~~--~~~~~~~~~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~vwd~~~-------~~ 1028 (1113)
                      ++++++ +.|++|.+|.....  +.+..+....++..|+.++|.|     .+..++.|-..|.|.+|....       +.
T Consensus       630 e~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~  709 (764)
T KOG1063|consen  630 EKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGT  709 (764)
T ss_pred             cceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccccee
Confidence            999999 59999999999888  7777665567899999999976     233678888999999999651       11


Q ss_pred             eeeecCCCcccCCCcccCccceEEEEeCC--------CC-CEEEEEeCCCcEEEEecc
Q 001258         1029 LRCRINPSAYLPAGVSSNVHPLVIAAHPQ--------EP-NEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1029 ~~~~~~~~~~~~~gh~~~v~~i~~~~~p~--------d~-~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      ......  .....+|.+.|..  +.|.|.        .+ ..|++|++|.+++++++.
T Consensus       710 ~~~~~~--l~~~~~~~~aV~r--l~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  710 FNLDTR--LCATIGPDSAVNR--LLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             eeeccc--cccccChHHhhhe--eEeccccccccccccceeEEeeecccceeEEeecc
Confidence            111111  1112256677775  777764        12 237999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.4e-39  Score=349.23  Aligned_cols=276  Identities=18%  Similarity=0.265  Sum_probs=236.6

Q ss_pred             CCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE--e-eeeeee---------ccCCCCcc
Q 001258          344 PEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV--L-RNFKVW---------DLGACSMP  410 (1113)
Q Consensus       344 ~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~--~-~~~~~~---------~~~~~~~~  410 (1113)
                      ...+|.-+..+.. -...++|..||+|+. +||.|..|..|++|.+...+...  . ..+.-.         +.......
T Consensus       363 ~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~  441 (707)
T KOG0263|consen  363 RNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS  441 (707)
T ss_pred             CCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence            3445666777766 467899999999999 79999999999999998533111  0 000000         11111222


Q ss_pred             cccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258          411 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  490 (1113)
Q Consensus       411 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  490 (1113)
                      .....+.||+++|..+.|+|+.++|++++.|++|++|.+.+..++-   .++||..+|+++.|+|.|-  +|||+|.|++
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~t  516 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQT  516 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCce
Confidence            3334589999999999999999999999999999999999988765   6789999999999999998  8999999999


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      .++|......+++.+.+|-+.|.|+.|+|+.  .|+++||.|.+|++||+.++..+..+.+|.++|.+++|||+|+    
T Consensus       517 ArLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr----  590 (707)
T KOG0263|consen  517 ARLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGR----  590 (707)
T ss_pred             eeeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCc----
Confidence            9999999999999999999999999998765  7999999999999999999999999988888888888888877    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                       +|++|+.||.|.+||+.+++.+..+..|  .+.|.++.|+.+|..||+|+.|++|++||+..-
T Consensus       591 -----------------~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  591 -----------------YLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             -----------------eEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                             7999999999999999999999999877  568999999999999999999999999998654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.3e-38  Score=302.90  Aligned_cols=291  Identities=20%  Similarity=0.312  Sum_probs=258.8

Q ss_pred             Eecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          353 RTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       353 ~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      ++|. |...|.++.|++|+++ ++++|.||.++|||..+..+.+.                   +.-....|..++|+|.
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPS  108 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPS  108 (343)
T ss_pred             EEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCC
Confidence            5555 9999999999999996 99999999999999998877763                   3344669999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCC--c-eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          432 GSLFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                      |+++|+|+-|+...||++.+.  + ..+....+.+|.+.+.|+.|.+|+.   |+|+|.|.+..+||+++|+.+..|.||
T Consensus       109 g~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH  185 (343)
T KOG0286|consen  109 GNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGH  185 (343)
T ss_pred             CCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCC
Confidence            999999999999999999865  2 1234447889999999999999876   999999999999999999999999999


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  588 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  588 (1113)
                      .+.|.++.+.|+ +++.+++|+-|+..++||++.+...+.+.+|...|.++.|.|+|.                     -
T Consensus       186 ~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------a  243 (343)
T KOG0286|consen  186 TGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------A  243 (343)
T ss_pred             cccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------e
Confidence            999999998875 668999999999999999999999999999999999988888886                     5


Q ss_pred             EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccC
Q 001258          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1113)
                      +++|++|++.++||++..+.+..+........|++++||..|++|++|..|.++.+||.-.+ +....+           
T Consensus       244 fatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L-----------  311 (343)
T KOG0286|consen  244 FATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL-----------  311 (343)
T ss_pred             eeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-----------
Confidence            99999999999999999999999987777778999999999999999999999999997655 222222           


Q ss_pred             CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258          669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  748 (1113)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  748 (1113)
                                                                                                     .
T Consensus       312 -------------------------------------------------------------------------------~  312 (343)
T KOG0286|consen  312 -------------------------------------------------------------------------------A  312 (343)
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           2


Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                      +|.++|+++..+|||..+++++.|..++||.
T Consensus       313 GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  313 GHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            3889999999999999999999999999983

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-37  Score=320.35  Aligned_cols=464  Identities=17%  Similarity=0.259  Sum_probs=354.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +.++|-++.|+|...+ ++++-..|.|.|||.++...+..                   +.-..-+|++..|-+-.++++
T Consensus        12 rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv   71 (794)
T KOG0276|consen   12 RSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV   71 (794)
T ss_pred             cCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence            8899999999999996 77778899999999999877753                   222345899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~~  515 (1113)
                      +|++|..|+||+..+++.++   .|.+|.+-|.+++..|...  +++|+|+|-+|++||.+.+ .+.++|.||...|.++
T Consensus        72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv  146 (794)
T KOG0276|consen   72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV  146 (794)
T ss_pred             EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence            99999999999999998776   7999999999999999999  8999999999999999865 6778999999999999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +|+|..+ +.+++++.|++|++|.+.+..+..++.+|...|.++.+-+-|.                   ..+|++|+.|
T Consensus       147 ~fnPkD~-ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsgaDD  206 (794)
T KOG0276|consen  147 AFNPKDP-NTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGADD  206 (794)
T ss_pred             EecCCCc-cceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecCCC
Confidence            9998654 7999999999999999999999999999999999999887664                   3579999999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  675 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1113)
                      .+|+|||..+..|++++.+|.  ..|..+.|+|.-.++++|+.||+++||+..+- +....+.                 
T Consensus       207 ~tiKvWDyQtk~CV~TLeGHt--~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn-----------------  266 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCVQTLEGHT--NNVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN-----------------  266 (794)
T ss_pred             ceEEEeecchHHHHHHhhccc--ccceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh-----------------
Confidence            999999999999999999774  47999999999999999999999999987654 2211110                 


Q ss_pred             ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258          676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  755 (1113)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~  755 (1113)
                                                                                               -...++.
T Consensus       267 -------------------------------------------------------------------------~gleRvW  273 (794)
T KOG0276|consen  267 -------------------------------------------------------------------------YGLERVW  273 (794)
T ss_pred             -------------------------------------------------------------------------cCCceEE
Confidence                                                                                     0234667


Q ss_pred             EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      +++-.+.++.++.|.++|.+.+=                                      .......+.++++|+.+-+
T Consensus       274 ~I~~~k~~~~i~vG~Deg~i~v~--------------------------------------lgreeP~vsMd~~gKIiwa  315 (794)
T KOG0276|consen  274 CIAAHKGDGKIAVGFDEGSVTVK--------------------------------------LGREEPAVSMDSNGKIIWA  315 (794)
T ss_pred             EEeecCCCCeEEEeccCCcEEEE--------------------------------------ccCCCCceeecCCccEEEE
Confidence            77777777778888888877651                                      1222334566666665544


Q ss_pred             EeC--CeEEEEE------CCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258          836 ASG--GKISLFN------MMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       836 ~sd--g~i~vwd------~~~~~~~----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      ...  -.+.+-.      +..++.+    +.+-...-....++-+| +|++++++ .||.-.||..-..+     ..+.+
T Consensus       316 ~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc-gdGEyiIyTala~R-----nK~fG  388 (794)
T KOG0276|consen  316 VHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC-GDGEYIIYTALALR-----NKAFG  388 (794)
T ss_pred             cCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe-cCccEEEEEeeehh-----hcccc
Confidence            431  1122222      2233222    11111112345678889 88877765 48999998632211     22456


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  983 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~  983 (1113)
                      .-....|++|.+..++--.++.|+++  ++.+..++..            .-..+..--.|.+|.+..++.+++||.+++
T Consensus       389 ~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~------------~~~~~e~i~gg~Llg~~ss~~~~fydW~~~  454 (794)
T KOG0276|consen  389 SGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIR------------PDMSAEGIFGGPLLGVRSSDFLCFYDWESG  454 (794)
T ss_pred             cceeEEEcCCCCeEEEEecCCceEEE--ecceeccccc------------cccceeeecCCceEEEEeCCeEEEEEcccc
Confidence            66788999998888888888889998  4433211110            011233334566777788999999999999


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                      +.++.+.     -....+.|+.+|.+++.++.|. .++..
T Consensus       455 ~lVrrI~-----v~~k~v~w~d~g~lVai~~d~S-fyil~  488 (794)
T KOG0276|consen  455 ELVRRIE-----VTSKHVYWSDNGELVAIAGDDS-FYILK  488 (794)
T ss_pred             eEEEEEe-----eccceeEEecCCCEEEEEecCc-eeEEE
Confidence            9998875     3567899999999999888664 44443

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=4.3e-37  Score=292.68  Aligned_cols=258  Identities=21%  Similarity=0.314  Sum_probs=220.5

Q ss_pred             eEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          352 TRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       352 ~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      .-++. |++.|+.++..+.+..++++++.|.++.+|++.......-.              ....+.||+..|..++.++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~   73 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSS   73 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEcc
Confidence            34444 99999999999998889999999999999998764322111              1114889999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc--
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--  508 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h--  508 (1113)
                      ||.+.++++.|+++++||+.+++..+   .|.+|...|.+++|++|++  .+++||.|++|++||+. |.+..++..+  
T Consensus        74 dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~  147 (315)
T KOG0279|consen   74 DGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSH  147 (315)
T ss_pred             CCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCC
Confidence            99999999999999999999997665   6889999999999999999  59999999999999965 5555555443  


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  588 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  588 (1113)
                      .+.|.|++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||.                     .
T Consensus       148 ~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------l  206 (315)
T KOG0279|consen  148 REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------L  206 (315)
T ss_pred             cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------E
Confidence            7999999999998778999999999999999999888888999999888888888887                     5


Q ss_pred             EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                      +++|+.||.+.+||++.++.+..+..   ...|.+++|+|+...|+.+.. ..|+|||+.++ ..+.
T Consensus       207 casGgkdg~~~LwdL~~~k~lysl~a---~~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~  268 (315)
T KOG0279|consen  207 CASGGKDGEAMLWDLNEGKNLYSLEA---FDIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE  268 (315)
T ss_pred             EecCCCCceEEEEEccCCceeEeccC---CCeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence            88899999999999999999888754   457999999998877766654 56999999887 4443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=7e-36  Score=305.89  Aligned_cols=510  Identities=19%  Similarity=0.248  Sum_probs=371.6

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCC--------cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcc
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  422 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg--------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  422 (1113)
                      ....++|++.|-|++.+||.-+ +++|...|        .|+|||..+-..+.                   ++..-...
T Consensus        97 Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phvriWdsv~L~TL~-------------------V~g~f~~G  156 (626)
T KOG2106|consen   97 QRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHVRIWDSVTLSTLH-------------------VIGFFDRG  156 (626)
T ss_pred             cccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCeeeecccccceeee-------------------eecccccc
Confidence            4467789999999999999884 88887766        49999977655554                   34455668


Q ss_pred             eEEEEEcC--CCCeEEEE--eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          423 VNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       423 V~~l~~sp--dg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      |.|++||+  .|.+|+.-  +.+..+.|||...+.....   ...-.+.|....|.|.+.. ++++++ .+.+.+|+.+.
T Consensus       157 V~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~---vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~  231 (626)
T KOG2106|consen  157 VTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP---VKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRG  231 (626)
T ss_pred             ceeeeecccCCCceEEEecCCCccccchhhchhhhccCc---ceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccC
Confidence            99999999  45566654  4567799999998776653   4445678999999999986 566666 68999999998


Q ss_pred             Cceee---Eeecc-CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          499 GAKQY---IFEGH-EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       499 ~~~~~---~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      +...+   .|..+ ...|.|++|.++.   -+++|..+|.|.+|+..+.........|.+.|.+++...+|.        
T Consensus       232 ~~l~k~~~~fek~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt--------  300 (626)
T KOG2106|consen  232 GSLVKRQGIFEKREKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT--------  300 (626)
T ss_pred             CceEEEeeccccccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc--------
Confidence            87654   34333 3668899976554   489999999999999977666555558888999999998887        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                    |++|+.|..|..|| ..-+.++..+.....+.|+.++=...+  |++|...+.|..=.+.++....
T Consensus       301 --------------llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~  363 (626)
T KOG2106|consen  301 --------------LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLT  363 (626)
T ss_pred             --------------EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEE
Confidence                          88899999999999 455555555555556667666554433  6666665555433333321110


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                                                                                                      
T Consensus       364 --------------------------------------------------------------------------------  363 (626)
T KOG2106|consen  364 --------------------------------------------------------------------------------  363 (626)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                  ..+|......++.+|+...+++++.|+.+++|+-..               -+|...           
T Consensus       364 ------------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~wt~~-----------  405 (626)
T KOG2106|consen  364 ------------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LEWTKI-----------  405 (626)
T ss_pred             ------------EEecccceeeEEcCCChhheeeccCcceEEEccCCc---------------eeEEEE-----------
Confidence                        023667788999999999999999999999997111               122211           


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-  892 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-  892 (1113)
                        ...++.|+.|+|.| .+|.|. .|...|.|.++...+..-. ...+++++.|+| +|.+||+|+.|+.|+||-+... 
T Consensus       406 --~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g  480 (626)
T KOG2106|consen  406 --IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANG  480 (626)
T ss_pred             --ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCC
Confidence              35678899999999 888888 8999999999855554444 378899999999 9999999999999999998753 


Q ss_pred             eeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258          893 EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  971 (1113)
Q Consensus       893 ~~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~  971 (1113)
                      ...... +.|..+|+.|.||+|+++|.+-+.|-.|..|....  +....             ++..+.|....-.|    
T Consensus       481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~--~~~~t-------------s~kDvkW~t~~c~l----  541 (626)
T KOG2106|consen  481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE--CKQIT-------------SVKDVKWATYTCTL----  541 (626)
T ss_pred             cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc--Ccccc-------------eecceeeeeeEEEE----
Confidence            222222 22448999999999999999999999999993322  21110             12233332211100    


Q ss_pred             CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258          972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus       972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
                                    -.......|...|..++-+.+.+++++|.+.|+|++|..+..+..+.+.    .-.+|++.|..  
T Consensus       542 --------------GF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~vt~--  601 (626)
T KOG2106|consen  542 --------------GFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSH----EYGGHSSHVTN--  601 (626)
T ss_pred             --------------EEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccce----eeccccceeEE--
Confidence                          0001113557788888999999999999999999999998766554332    22389999996  


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEec
Q 001258         1052 IAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1052 ~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
                      ++|.-.| ..|++.+.|.+|..|++
T Consensus       602 V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  602 VAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             EEEeeCC-ceEEecCCCceEEEEEe
Confidence            7777655 45666669999999987

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.1e-35  Score=318.57  Aligned_cols=545  Identities=13%  Similarity=0.194  Sum_probs=407.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +.+.|+|++=..+--   .+|+ ...|.+|-  .|+.+..                  +..+|.+.|.-+.  +=|.+++
T Consensus        75 lp~~I~alas~~~~v---y~A~-g~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~--~fGe~li  128 (910)
T KOG1539|consen   75 LPDKITALASDKDYV---YVAS-GNKIYAYA--RGKHIRH------------------TTLLHGAKVHLLL--PFGEHLI  128 (910)
T ss_pred             CCCceEEEEecCceE---EEec-CcEEEEEE--ccceEEE------------------EeccccceEEEEe--eecceEE
Confidence            789999988665543   3332 34566665  3433332                  4667777777765  3589999


Q ss_pred             EEeCCCeEEEEEccCC-ceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          437 VAYSRHIVQIYSYHGG-DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      ++..++.+.||+..++ +.+....++. ...+.|+++.- |..--..++.|+.+|.+.+|++++++.+++++++...|++
T Consensus       129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~  207 (910)
T KOG1539|consen  129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA  207 (910)
T ss_pred             EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence            9999999999999884 2211111222 22223777653 4321114889999999999999999999999999999999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      +.-+|-  -..++.|..+|+|.+++++..+.+..+....+.|++++|..||..                    .+++++.
T Consensus       208 ieqsPa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p--------------------~las~~~  265 (910)
T KOG1539|consen  208 IEQSPA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNP--------------------LLASGRS  265 (910)
T ss_pred             eccCCc--ceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCe--------------------eEEeccC
Confidence            985444  468999999999999999999999999888889999999999973                    4788888


Q ss_pred             CCcEEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC---ccceeccccccccccccCCC
Q 001258          595 DFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSEN  670 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~  670 (1113)
                      .|.+-+||++..+.+..+. .|  ...|....|.|....+++++.|+.+++|-..++   .+.++...||+.+...    
T Consensus       266 ~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~----  339 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC----  339 (910)
T ss_pred             CceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh----
Confidence            8999999999888777665 34  457899999999999999999999998865543   2445566677665442    


Q ss_pred             CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee--------
Q 001258          671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS--------  742 (1113)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~--------  742 (1113)
                          +..++                                ..+..+.+++.|++.+.+++.........-.        
T Consensus       340 ----irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~k  383 (910)
T KOG1539|consen  340 ----IRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAK  383 (910)
T ss_pred             ----eeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccc
Confidence                22221                                2466778888899888888754322211111        


Q ss_pred             -ccc--CcccccCceEEEEEeCCC----ceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          743 -LRL--PENLRATKISRLIFTNSG----NAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       743 -~~~--~~~~~~~~i~~~~~s~~~----~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                       ...  .......+|..+++...-    .-++++.. +...+.|++.....                   |+..-..-+.
T Consensus       384 k~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~-------------------G~~~L~~~~~  444 (910)
T KOG1539|consen  384 KVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTS-------------------GRHVLDPKRF  444 (910)
T ss_pred             cccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccc-------------------ccEEecCccc
Confidence             000  111233466777765431    12444444 47788888764221                   1111100000


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                      ......+++++.++.|++.+.|. .|+|-+|++++|-....+   ..|..+|+.++... -++.+++++.+|.+.+||..
T Consensus       445 ~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~  523 (910)
T KOG1539|consen  445 KKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFK  523 (910)
T ss_pred             cccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecC
Confidence            11456789999999999999998 899999999999888888   58999999999987 78899999999999999999


Q ss_pred             cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-
Q 001258          891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  969 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-  969 (1113)
                      +..++..++- ...++++..+.....++.+..|-.|+++|+.+.+     ....+.||..   .|+.++|||||++|++ 
T Consensus       524 ~k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisa  594 (910)
T KOG1539|consen  524 KKVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISA  594 (910)
T ss_pred             Ccceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEe
Confidence            8887777763 4568888888888899999999999999998833     3455666664   8999999999999999 


Q ss_pred             EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEec
Q 001258          970 VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1113)
Q Consensus       970 ~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~ 1024 (1113)
                      +.|++|++||+.++.++-.+..   ..+.+++.|||+|.+||++..| .-|++|.=
T Consensus       595 smD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWsN  647 (910)
T KOG1539|consen  595 SMDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWSN  647 (910)
T ss_pred             ecCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence            6899999999999999988765   6799999999999999999988 55999964

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-35  Score=284.46  Aligned_cols=285  Identities=16%  Similarity=0.285  Sum_probs=244.7

Q ss_pred             eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      .+|+||.+.|.++.|++|.+  .++++|.||.+.|||.-+....+.+.-....|..++|+|+.  +++++|+.|+...||
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg--~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG--NFVACGGLDNKCSIY  124 (343)
T ss_pred             EEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC--CeEEecCcCceeEEE
Confidence            47999999999999999999  79999999999999999999999998889999999977654  799999999999999


Q ss_pred             EcCCCC------CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258          539 LYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  612 (1113)
Q Consensus       539 d~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  612 (1113)
                      ++.+..      ....+.+|.+.+.+..|..|+.                      |++++.|.+.-+||+++++.+..+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEEEe
Confidence            998652      2335777888888888877775                      999999999999999999999999


Q ss_pred             ccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258          613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  691 (1113)
Q Consensus       613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1113)
                      .+|  ...|.+++++| +++.+++|+-|+..++||++.+ ...+.+.+                                
T Consensus       183 ~GH--~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g--------------------------------  227 (343)
T KOG0286|consen  183 HGH--TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG--------------------------------  227 (343)
T ss_pred             cCC--cccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc--------------------------------
Confidence            866  55899999999 9999999999999999999877 44333321                                


Q ss_pred             ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec
Q 001258          692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  771 (1113)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  771 (1113)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (343)
T KOG0286|consen  228 --------------------------------------------------------------------------------  227 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc
Q 001258          772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  850 (1113)
Q Consensus       772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~  850 (1113)
                                                                   |...|.+++|.|+|.-+++|+ |++.|+||++..+
T Consensus       228 ---------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~  262 (343)
T KOG0286|consen  228 ---------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ  262 (343)
T ss_pred             ---------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecCCc
Confidence                                                         555566666666666666666 5677777777666


Q ss_pred             eeeeecC--CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE
Q 001258          851 TMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV  928 (1113)
Q Consensus       851 ~~~~~~~--~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~i  928 (1113)
                      .+..+..  ...+|++++||. .|++|++|..|..+.+||.-.++.+..|.||.++|.+|..+|||.-|+|||.|.+++|
T Consensus       263 ~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lri  341 (343)
T KOG0286|consen  263 ELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRI  341 (343)
T ss_pred             EEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheee
Confidence            6666542  235799999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ee
Q 001258          929 WS  930 (1113)
Q Consensus       929 wd  930 (1113)
                      |.
T Consensus       342 W~  343 (343)
T KOG0286|consen  342 WA  343 (343)
T ss_pred             cC
Confidence            94

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.4e-35  Score=291.13  Aligned_cols=339  Identities=17%  Similarity=0.249  Sum_probs=285.2

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+..|++.|.+++.+|+.+++|+|+.|....||++.+|+...   .+.+|++.|+++.|+.||.  +||||+.+|.|+||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~  133 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF  133 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence            478899999999999999999999999999999999998554   7889999999999999999  89999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ...++.....+...-..+.-++|||..  .+|+.|+.||.+.+|.+.+......+.+|..++++=.|.|+|+        
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~a--~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--------  203 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPRA--HILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--------  203 (399)
T ss_pred             EcccCceEEEeecccCceEEEEecccc--cEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence            999999988887677788889999855  7999999999999999998777778888888888777777776        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                   .++++..||+|++||+.++.++..+....+ ....++.++..+..++.|..++.+.+.+..++ +.+
T Consensus       204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv  268 (399)
T KOG0296|consen  204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV  268 (399)
T ss_pred             -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence                         689999999999999999999999875553 35789999999999999999999998877666 222


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ....+                                                                           
T Consensus       269 ~~~n~---------------------------------------------------------------------------  273 (399)
T KOG0296|consen  269 NCNNG---------------------------------------------------------------------------  273 (399)
T ss_pred             EecCC---------------------------------------------------------------------------
Confidence            21110                                                                           


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                 .+..+....                                            
T Consensus       274 ---------------------------~~~~l~~~~--------------------------------------------  282 (399)
T KOG0296|consen  274 ---------------------------TVPELKPSQ--------------------------------------------  282 (399)
T ss_pred             ---------------------------CCccccccc--------------------------------------------
Confidence                                       000000000                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      ......|.++.++..-.+.|+|+ ||+|.|||+...+...... |...|+.+.|-+  ..+|++++.||.|+.||.++|+
T Consensus       283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             hhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence            00233445556666667888888 9999999998876655554 888899999986  4689999999999999999999


Q ss_pred             eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          894 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       894 ~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      ++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999999864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.9e-34  Score=310.05  Aligned_cols=573  Identities=15%  Similarity=0.223  Sum_probs=372.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ...+|-.++|+|...+ +.++-..|.|.+||+.-+.++.                   .+.+|.++|..++|+|++.+++
T Consensus         8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~-------------------rFdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLID-------------------RFDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHh-------------------hhhccCCccceeeecCCCCeEE
Confidence            4578899999999996 8888999999999999888776                   3789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +|++|..|+||++++.+++-   ++.||.+.|..+.|.+.-.  +++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999987665   8999999999999999888  799999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC-CCceEE------EEEccCC--CeEEeccccCceeEEEecCCCC
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTT------MAYSADG--TRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~------~~~s~~~--~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      |+|..  ..++|+|.|.+|++||+.-......-++. ......      +--.+|-  +.++.||. ..+..++|+|.-.
T Consensus       143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP  219 (1202)
T ss_pred             cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence            99877  48999999999999999754333221110 000000      0000111  14445554 4788899999999


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                      .+++|+.|..|++|.+...+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++....     
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrrend-----  293 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRREND-----  293 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeeccCC-----
Confidence            999999999999999987665544445566789999999999999999999999999999765 45554432211     


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                            .|-...                              ..| .-.+..++.|+-+.+|.++.              
T Consensus       294 ------RFW~la------------------------------ahP-~lNLfAAgHDsGm~VFkleR--------------  322 (1202)
T KOG0292|consen  294 ------RFWILA------------------------------AHP-ELNLFAAGHDSGMIVFKLER--------------  322 (1202)
T ss_pred             ------eEEEEE------------------------------ecC-CcceeeeecCCceEEEEEcc--------------
Confidence                  111100                              001 12344455566666666552              


Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                         +.++.  +++  ++.|+-.- +..|+-+|+.+..-.                   .+... -.......+++++.++
T Consensus       323 ---Erpa~--~v~--~n~LfYvk-d~~i~~~d~~t~~d~-------------------~v~~l-r~~g~~~~~~~smsYN  374 (1202)
T KOG0292|consen  323 ---ERPAY--AVN--GNGLFYVK-DRFIRSYDLRTQKDT-------------------AVASL-RRPGTLWQPPRSLSYN  374 (1202)
T ss_pred             ---cCceE--EEc--CCEEEEEc-cceEEeeeccccccc-------------------eeEec-cCCCcccCCcceeeec
Confidence               11111  121  22222222 556666655431110                   01110 0011134678899999


Q ss_pred             cCCCEEEEEe---CCeEEEEECCCCceeeee-c-C-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258          828 KNDSYVMSAS---GGKISLFNMMTFKTMATF-M-P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  901 (1113)
Q Consensus       828 ~~~~~l~~~s---dg~i~vwd~~~~~~~~~~-~-~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h  901 (1113)
                      |....+..++   .+...++.+.....-..- . . .......+ |-. .+++.+.--.+..+.+=++.+. ..+++..-
T Consensus       375 pae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~-fva-rNrfavl~k~~~~v~ik~l~N~-vtkkl~~~  451 (1202)
T KOG0292|consen  375 PAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGAL-FVA-RNRFAVLDKSNEQVVIKNLKNK-VTKKLLLP  451 (1202)
T ss_pred             cccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceE-EEE-ecceEEEEecCcceEEecccch-hhhcccCc
Confidence            9887776664   356666655432111000 0 0 01112222 222 2222222222445555554432 22222211


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  981 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~  981 (1113)
                       ..+..+-+.-.|.+|+..  ...|.++|++......+...          ..+..+.||+|..+++.-+...|.|.+.+
T Consensus       452 -~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~~----------s~vkyvvws~dm~~vAll~Kh~i~i~~kk  518 (1202)
T KOG0292|consen  452 -ESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIKV----------SKVKYVVWSNDMSRVALLSKHTITIADKK  518 (1202)
T ss_pred             -ccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEec----------CceeEEEEcCccchhhhcccceEEEEecc
Confidence             234455566666666542  34599999987544322111          36788999999999888777888888854


Q ss_pred             ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc--eeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                       .+.+.+..   ..-.|.+-+|..+|-+|++...-  |+ |-+.+|.  .+.++.          ..+....+     .|
T Consensus       519 -L~l~~sih---Etiriksgawde~gVfiYtT~nH--ik-Yal~~GD~GIikTLd----------~~iyitkv-----~g  576 (1202)
T KOG0292|consen  519 -LELLCSIH---ETIRIKSGAWDEDGVFIYTTLNH--IK-YALENGDSGIIKTLD----------KPIYITKV-----KG  576 (1202)
T ss_pred             -hhheecch---heeEeeeceeccCceEEEEehhh--hh-hhhccCCcceEEecc----------cceEEEEe-----eC
Confidence             33333322   15578888999999888876532  11 2222221  222222          12222223     47


Q ss_pred             CEEEEEeCCCcEEEEeccCCC
Q 001258         1060 NEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.+..-..|+.+.+..+...|
T Consensus       577 n~V~cl~rd~~~~~~~IDptE  597 (1202)
T KOG0292|consen  577 NKVFCLNRDGEIECLTIDPTE  597 (1202)
T ss_pred             CEEEEEecCCCeEEEeechHH
Confidence            788888889999988887665

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.6e-37  Score=307.05  Aligned_cols=349  Identities=19%  Similarity=0.299  Sum_probs=286.1

Q ss_pred             ccCCCCCCCCCcccCCCCCchhhhcccCCCCC-----ccccccCcccC-CccccCCcccCCCCCCCCCCCCCCcceeEec
Q 001258          282 LKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGI-----SDEINLPVNVL-PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTL  355 (1113)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  355 (1113)
                      .++.+++.+++.++|.++...+...|...++.     .....+.+++| +..|..+           ....++.+..++-
T Consensus        23 g~rlrk~~~Rr~VDy~s~v~~~~~nR~~~~~~d~~~~~p~~~~~~~~~pp~~~~~d-----------p~~~~~tKf~h~s   91 (464)
T KOG0284|consen   23 GKRLRKPVARRTVDYNSPVCNYRQNRRWQYDRDRALLQPDSSYIIDLVPPSLYLDD-----------PSSAFTTKFVHTS   91 (464)
T ss_pred             CccccchhhhcccCCCcHHHHHHHHHhhcccccccccCCCchhhhcccChhhccCC-----------cccccccceEecc
Confidence            46677777799999999998888777766652     22237778888 5555522           1223344444443


Q ss_pred             -c-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          356 -N-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       356 -~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                       . -+..|..|.|.|+|++ |++|+..|.+.+|+..+      ++|             ..++..|...|+++.||++|.
T Consensus        92 ~NKvkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~------fnF-------------EtilQaHDs~Vr~m~ws~~g~  151 (464)
T KOG0284|consen   92 SNKVKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTS------FNF-------------ETILQAHDSPVRTMKWSHNGT  151 (464)
T ss_pred             ccccccceeeEEEcCCCce-eEeecccccEEEecCce------eeH-------------HHHhhhhcccceeEEEccCCC
Confidence             2 4679999999999997 89999999999999632      122             126889999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ++++|+.+|.|++|+..-....    .+.+|. ..|++++|+|++.  .|+++|+|++|+|||....+.-..+.||.-.|
T Consensus       152 wmiSgD~gG~iKyWqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdV  225 (464)
T KOG0284|consen  152 WMISGDKGGMIKYWQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDV  225 (464)
T ss_pred             EEEEcCCCceEEecccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCc
Confidence            9999999999999998754322    344554 8999999999888  79999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .++.|+|..  .+|++||.|..|++||.+++.++.++..|...|..+.|++++.                     +|+++
T Consensus       226 ksvdWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N---------------------~Llt~  282 (464)
T KOG0284|consen  226 KSVDWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGN---------------------WLLTG  282 (464)
T ss_pred             ceeccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCC---------------------eeEEc
Confidence            999999987  5899999999999999999999999999998888888877765                     89999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      +.|..++++|+++.+.+..+.+|  ...|+++.|+| ...+|.+|+.||.|..|.+... +.+..               
T Consensus       283 skD~~~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~---------------  344 (464)
T KOG0284|consen  283 SKDQSCKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE---------------  344 (464)
T ss_pred             cCCceEEEEehhHhHHHHHhhcc--hhhheeeccccccccceeeccCCCceEEEecccc-ccccC---------------
Confidence            99999999999988888888866  55899999999 6789999999999999987522 11110               


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                                                                ...+|.
T Consensus       345 --------------------------------------------------------------------------i~~AHd  350 (464)
T KOG0284|consen  345 --------------------------------------------------------------------------IPPAHD  350 (464)
T ss_pred             --------------------------------------------------------------------------CCcccc
Confidence                                                                                      013488


Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                      ..|.+++++|-|..|++++.|.++++|.-.+
T Consensus       351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r~r  381 (464)
T KOG0284|consen  351 GEIWSLAYHPLGHILATGSNDRTVRFWTRNR  381 (464)
T ss_pred             cceeeeeccccceeEeecCCCcceeeeccCC
Confidence            8999999999999999999999999997654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-35  Score=280.67  Aligned_cols=296  Identities=16%  Similarity=0.234  Sum_probs=249.4

Q ss_pred             ccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258          748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  826 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~  826 (1113)
                      .+|.+.|+.++..+. ...++.++.|..+.+|++...                 |...|..+.. +.|  |...|..++.
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~   71 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL   71 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence            459999999999887 556788888999999998743                 2334443332 444  9999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc--ccc
Q 001258          827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG--HSK  903 (1113)
Q Consensus       827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~--h~~  903 (1113)
                      ++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|++... +..++..  |++
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~  149 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHRE  149 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCcC
Confidence            99999999999 99999999999999999999999999999999 8999999999999999998754 4444433  378


Q ss_pred             CeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeC
Q 001258          904 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  980 (1113)
Q Consensus       904 ~V~~l~~s~d--~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~  980 (1113)
                      -|+++.|+|+  ..+++++|.|++|++||+++.+     ....+.+|.   +.++.+++||||...++ +.|+.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            8999999998  7899999999999999999833     345555665   48899999999999999 59999999999


Q ss_pred             CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC
Q 001258          981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus       981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~ 1060 (1113)
                      +.++.+..+   +|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+.+....+....+.+.++.++|++ ||.
T Consensus       222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~  296 (315)
T KOG0279|consen  222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQ  296 (315)
T ss_pred             cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCc
Confidence            999997766   568999999999987666555 466799999999999988876555443445677888999998 899


Q ss_pred             EEEEEeCCCcEEEEeccC
Q 001258         1061 EFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1061 ~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .|+.|-.|+.|++|.+..
T Consensus       297 tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  297 TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEeeecCCcEEEEEeec
Confidence            999999999999998753

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=5.8e-34  Score=303.41  Aligned_cols=546  Identities=17%  Similarity=0.236  Sum_probs=387.0

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC---eEEEEe
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAY  439 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~  439 (1113)
                      ...|.|.+  ++|.| ....|.+||..+.....                   .+.||.++|+|+.|-|+.+   ++++|+
T Consensus        19 v~sw~~~~--~vafG-a~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~   76 (764)
T KOG1063|consen   19 VSSWGPGG--LVAFG-AGPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGD   76 (764)
T ss_pred             cccccccc--eEEec-CCceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEcc
Confidence            34456665  35555 46789999987653332                   5899999999999999888   899999


Q ss_pred             CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCc--eeeEeeccCcCEE--E
Q 001258          440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVY--S  514 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~--~~~~~~~h~~~v~--~  514 (1113)
                      .|+.|++|.++... +....++.+|...+.|+.-.  ..   +.++ ..|+++.+||.+..+  +...+.--.+.+.  |
T Consensus        77 sD~~v~lW~l~~~~-~~~i~~~~g~~~~~~cv~a~--~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLc  150 (764)
T KOG1063|consen   77 SDGRVILWKLRDEY-LIKIYTIQGHCKECVCVVAR--SS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLC  150 (764)
T ss_pred             CCCcEEEEEEeehh-eEEEEeecCcceeEEEEEee--ee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHH
Confidence            99999999999433 45566788877666665432  22   3333 789999999985554  2333332223333  3


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCC--CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      +++.+.++.-.++.|+.+..|.++.-.+.  .....+.+|...|.+++|...+.                  +.-+|+++
T Consensus       151 L~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~  212 (764)
T KOG1063|consen  151 LAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASS  212 (764)
T ss_pred             HhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEec
Confidence            44444333345666777778888865533  33457889999999999987664                  12258899


Q ss_pred             ecCCcEEEEECCCCc---------------------eEEEEc--------cCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258          593 GDDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIK  643 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  643 (1113)
                      +.|..|+||.+.-+.                     ....+.        ..+|...|.++.|+|.+..|.+++.|.++.
T Consensus       213 SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmi  292 (764)
T KOG1063|consen  213 SQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMI  292 (764)
T ss_pred             CCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceE
Confidence            999999999874322                     010111        124567889999999998888999999999


Q ss_pred             EEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258          644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  723 (1113)
Q Consensus       644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  723 (1113)
                      +|...+..-....                                                                   
T Consensus       293 iW~pd~~tGiWv~-------------------------------------------------------------------  305 (764)
T KOG1063|consen  293 IWKPDENTGIWVD-------------------------------------------------------------------  305 (764)
T ss_pred             EEecCCccceEEE-------------------------------------------------------------------
Confidence            9975443101000                                                                   


Q ss_pred             CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCC
Q 001258          724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  803 (1113)
Q Consensus       724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~  803 (1113)
                       .+|+=.+                .+......+..|+|+++.+++-+..|..++|....              ...|...
T Consensus       306 -~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~  354 (764)
T KOG1063|consen  306 -VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE  354 (764)
T ss_pred             -EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec
Confidence             0000000                01334567888999999999999999999997221              1123321


Q ss_pred             CccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEE
Q 001258          804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIG  878 (1113)
Q Consensus       804 ~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g  878 (1113)
                      -      .+  .+|...|+.++|+|.|.+|++.+ |-+-|+|-.-.    ...+...+-|...++|++|-+ ....+++|
T Consensus       355 ~------~i--SGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSg  425 (764)
T KOG1063|consen  355 P------VI--SGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSG  425 (764)
T ss_pred             c------cc--ccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeec
Confidence            1      12  24999999999999999999998 99999987542    123344566788899999997 56788888


Q ss_pred             ecCCcEEEEEcc-------------------------------------------cce----------------------
Q 001258          879 MDDSSIQIYNVR-------------------------------------------VDE----------------------  893 (1113)
Q Consensus       879 ~~dg~v~iwd~~-------------------------------------------~~~----------------------  893 (1113)
                      .+...+|+|+..                                           +|.                      
T Consensus       426 AdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~  505 (764)
T KOG1063|consen  426 ADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPT  505 (764)
T ss_pred             ccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCCh
Confidence            888999999852                                           010                      


Q ss_pred             -----------eeeeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258          894 -----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  957 (1113)
Q Consensus       894 -----------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  957 (1113)
                                 .++++.||...|++++.+|+|+++||++...     .|++|+..+...     .+...+|.-   .|+.
T Consensus       506 EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~  577 (764)
T KOG1063|consen  506 EDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTR  577 (764)
T ss_pred             HHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEE
Confidence                       1233568999999999999999999998753     589999988543     334556654   7999


Q ss_pred             EEEccCCcEEEE-EcCCeEEEEeCCccceeeccc---cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC--ceee
Q 001258          958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRC 1031 (1113)
Q Consensus       958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~--~~~~ 1031 (1113)
                      ++|||||++|++ +.|+++.+|........ .+.   ...|..-|.+..|+||+.+++|++.|++|+||.....  +.+.
T Consensus       578 l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~  656 (764)
T KOG1063|consen  578 LAFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYIS  656 (764)
T ss_pred             EEECCCCcEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhh
Confidence            999999999998 79999999997443221 111   4579999999999999999999999999999999888  5554


Q ss_pred             ecCCCcccCCCcccCccceEEEEeCCCCC----EEEEEeCCCcEEEEecc
Q 001258         1032 RINPSAYLPAGVSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1032 ~~~~~~~~~~gh~~~v~~i~~~~~p~d~~----~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      ++.     ...++..|++  +++.|.+.+    .++.|-..|.|.+|+..
T Consensus       657 ~~a-----~~~~~~aVTA--v~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  657 RFA-----CLKFSLAVTA--VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hhc-----hhccCCceee--EEeeccccccccceEEEEecccEEEEEecc
Confidence            432     1245677886  555554433    78999999999999966

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.8e-34  Score=299.71  Aligned_cols=470  Identities=18%  Similarity=0.205  Sum_probs=346.8

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      +..|+..|.++.|+|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-.--.  ++++|++|..|+|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            55589999999999999999999999999999999988777   6666788999999998777  799999999999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ..+++.++.|..|.+.|.+++.||..  .+++|+|.|-+|++||++.. .+.+++.+|.+.|..++|.|...        
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------  153 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------  153 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence            99999999999999999999999876  69999999999999999865 45668999999999999998765        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCCcc
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                                  +.+++++-|++|++|.+.+..+..++++|  ...|+|+.|-+  |..+|++|++|.++++||..+. .
T Consensus       154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~  218 (794)
T KOG0276|consen  154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S  218 (794)
T ss_pred             ------------cceeeeeccccEEEEEcCCCCCceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence                        46999999999999999998888888866  55899999998  4479999999999999999887 7


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      ++++++|                                                                         
T Consensus       219 CV~TLeG-------------------------------------------------------------------------  225 (794)
T KOG0276|consen  219 CVQTLEG-------------------------------------------------------------------------  225 (794)
T ss_pred             HHHHhhc-------------------------------------------------------------------------
Confidence            7777765                                                                         


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                                       |...|..+.|+|.-..+++++.||+++||.-.+-..                      ... +
T Consensus       226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l----------------------E~t-L  265 (794)
T KOG0276|consen  226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL----------------------EKT-L  265 (794)
T ss_pred             -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcceeh----------------------hhh-h
Confidence                             556678889999999999999999999997542110                      000 0


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE----EEecCCcEEEEE
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA----IGMDDSSIQIYN  888 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la----~g~~dg~v~iwd  888 (1113)
                        ...-+.+.|++-.+.+..+++|.|....+..+-..++...+...    -.+.|+. .+....    +.+.++     +
T Consensus       266 --n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsMd~~----gKIiwa~-~~ei~~~~~ks~~~~~-----e  333 (794)
T KOG0276|consen  266 --NYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSMDSN----GKIIWAV-HSEIQAVNLKSVGAQK-----E  333 (794)
T ss_pred             --hcCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceeecCC----ccEEEEc-CceeeeeeceeccCcc-----c
Confidence              01456789999999999999999766666666554444333311    1233332 121111    111111     3


Q ss_pred             cccceeee----eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          889 VRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       889 ~~~~~~~~----~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      +..|+.+.    .+-.-.-....++-+|+|++++.|+ ||.-.||..-..     +..  .      .+.-....|++|.
T Consensus       334 v~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~-----RnK--~------fG~~~eFvw~~ds  399 (794)
T KOG0276|consen  334 VTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALAL-----RNK--A------FGSGLEFVWAADS  399 (794)
T ss_pred             ccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeeh-----hhc--c------cccceeEEEcCCC
Confidence            33343321    1111111234577899998877665 788888863321     111  1      1345778999997


Q ss_pred             cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          965 IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       965 ~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      ...++ -+++.|.++  ++++..+.+....+      ...- -|..|+....++.+++||.+++++++++.         
T Consensus       400 ne~avRes~~~vki~--knfke~ksi~~~~~------~e~i-~gg~Llg~~ss~~~~fydW~~~~lVrrI~---------  461 (794)
T KOG0276|consen  400 NEFAVRESNGNVKIF--KNFKEHKSIRPDMS------AEGI-FGGPLLGVRSSDFLCFYDWESGELVRRIE---------  461 (794)
T ss_pred             CeEEEEecCCceEEE--ecceeccccccccc------eeee-cCCceEEEEeCCeEEEEEcccceEEEEEe---------
Confidence            77777 678999998  67777766654322      1111 23345555557889999999999999986         


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                         |.+-.+.|+- +|.+++.++ |.+.++..+.
T Consensus       462 ---v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n  490 (794)
T KOG0276|consen  462 ---VTSKHVYWSD-NGELVAIAG-DDSFYILKFN  490 (794)
T ss_pred             ---eccceeEEec-CCCEEEEEe-cCceeEEEec
Confidence               3333477775 677777666 4456666554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3e-35  Score=274.83  Aligned_cols=230  Identities=20%  Similarity=0.303  Sum_probs=190.9

Q ss_pred             eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001258          372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  451 (1113)
Q Consensus       372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~  451 (1113)
                      -+|++++.|.+|++|...+|.+...                   +....+.|+.+...||+++||+++.. .|++||+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence            3899999999999999999999873                   44556789999999999999999765 599999999


Q ss_pred             CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec
Q 001258          452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  531 (1113)
Q Consensus       452 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~  531 (1113)
                      +..- +..++.+|...|++|.|-.||+  .++|||+||+++|||++...+.+.++ |..+|+++..+|..  ..|++|..
T Consensus        71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq  144 (311)
T KOG0315|consen   71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ  144 (311)
T ss_pred             CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence            8754 5668999999999999999999  79999999999999999987777776 77999999988765  57999999


Q ss_pred             CCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---
Q 001258          532 DGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---  607 (1113)
Q Consensus       532 dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---  607 (1113)
                      +|.|++||+....+...+. .....+.+++..|||                     .+++++...|..++|++-+..   
T Consensus       145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dg---------------------sml~a~nnkG~cyvW~l~~~~~~s  203 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDG---------------------SMLAAANNKGNCYVWRLLNHQTAS  203 (311)
T ss_pred             CCcEEEEEccCCccccccCCCCCcceeeEEEcCCC---------------------cEEEEecCCccEEEEEccCCCccc
Confidence            9999999999865554432 233455555555555                     478889999999999987643   


Q ss_pred             ---eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          608 ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       608 ---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                         ++..++.|  ...+..+.+|||+++|++++.|.+++||+..+.
T Consensus       204 ~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  204 ELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             cceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence               34445555  446889999999999999999999999987543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-35  Score=292.37  Aligned_cols=273  Identities=17%  Similarity=0.278  Sum_probs=237.9

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ..++.+|...|+.+-|+|+-. ++++++.|++|++||..+|+...                   .++||.+.|..++|+.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a  160 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA  160 (406)
T ss_pred             hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence            445667999999999999998 79999999999999999998854                   5899999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      .|++||+++.|-.+++||..+.  ..+...+.+|...|.+++|-|.|.  ++++++.|.+|++|++.+|.+++++.+|..
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence            9999999999999999999873  223336889999999999999998  899999999999999999999999999999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|..+.  +..||.++++++.|.+|++|-+.+..+...+..|..+|.+++|.|....--.....+.      ...+.++.
T Consensus       237 wvr~v~--v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~  308 (406)
T KOG0295|consen  237 WVRMVR--VNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG  308 (406)
T ss_pred             hEEEEE--ecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence            999988  5678899999999999999999999999999999999999999887641100000000      01346899


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      +++.|++|++||+.++.++.++.+|.  ..|..++|+|.|+||+++.+|+++++||+.+. ++.+.+.
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~  373 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE  373 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence            99999999999999999999998775  48999999999999999999999999999988 6665554

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-34  Score=284.33  Aligned_cols=301  Identities=22%  Similarity=0.325  Sum_probs=267.8

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|..+|+.+-|.|+-...++++.|++|++||..+++..+   .++||.+.|.+|+|+..|+  ++++++.|-.+++|
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW  177 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence            477899999999999999999999999999999999999765   8999999999999999999  89999999999999


Q ss_pred             eCCC-CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          495 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       495 d~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      |..+ .++++.+.+|...|.+++|.|.+  .+|++++.|.+|+.|++.++-++.++.+|...|..+..+.||.       
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-------  248 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-------  248 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence            9987 67889999999999999988765  6999999999999999999999999999999988888888886       


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                                    .+++++.|.+|++|-..++++...+..|.+  .|.+++|-|...+  .     .|  .        
T Consensus       249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~-----~i--~--------  295 (406)
T KOG0295|consen  249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--P-----SI--S--------  295 (406)
T ss_pred             --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--c-----ch--h--------
Confidence                          688999999999999999988888887766  6788888775320  0     00  0        


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                                                                                                      
T Consensus       296 --------------------------------------------------------------------------------  295 (406)
T KOG0295|consen  296 --------------------------------------------------------------------------------  295 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                                      -+++                                            
T Consensus       296 --------------------------------~at~--------------------------------------------  299 (406)
T KOG0295|consen  296 --------------------------------EATG--------------------------------------------  299 (406)
T ss_pred             --------------------------------hccC--------------------------------------------
Confidence                                            0000                                            


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                         ...         .+.++.+++ |++|++||+.++.++.++.+|...|..++|+| +|+||+++.+|+++++||++++
T Consensus       300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence               000         456788888 99999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      +++..+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus       367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999963

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=3e-33  Score=261.47  Aligned_cols=296  Identities=16%  Similarity=0.280  Sum_probs=242.2

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccC
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHE  509 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~  509 (1113)
                      .-+|+++|.|.+|++|...+|.+.+   ++....+.|+.+...||++  .|++++ ...||+||+.++.  ++.++.+|.
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~r---Tiqh~dsqVNrLeiTpdk~--~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~   83 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSR---TIQHPDSQVNRLEITPDKK--DLAAAG-NQHVRLYDLNSNNPNPVATFEGHT   83 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEE---EEecCccceeeEEEcCCcc--hhhhcc-CCeeEEEEccCCCCCceeEEeccC
Confidence            4579999999999999999999887   6776677999999999999  677776 4689999999765  588999999


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ..|.++.|.  .+|.++++|+.||+++|||++.......+... .+|+++...|+                     ...|
T Consensus        84 kNVtaVgF~--~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpn---------------------QteL  139 (311)
T KOG0315|consen   84 KNVTAVGFQ--CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPN---------------------QTEL  139 (311)
T ss_pred             CceEEEEEe--ecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCC---------------------cceE
Confidence            999999976  56699999999999999999986665555433 55665555554                     4469


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1113)
                      ++|..+|.|++||+.+..+...+..... ..|.++...|||.+++.+.+.|..++|++-+. .....+            
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~~-~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~-~~~s~l------------  205 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPEDD-TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNH-QTASEL------------  205 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCCC-cceeeEEEcCCCcEEEEecCCccEEEEEccCC-Cccccc------------
Confidence            9999999999999998877776654443 47899999999999999999999999987653 111000            


Q ss_pred             CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258          670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  749 (1113)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  749 (1113)
                            .|                                                                        
T Consensus       206 ------~P------------------------------------------------------------------------  207 (311)
T KOG0315|consen  206 ------EP------------------------------------------------------------------------  207 (311)
T ss_pred             ------eE------------------------------------------------------------------------
Confidence                  00                                                                        


Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                          +.        +                                               ++  .|...+..+.+|||
T Consensus       208 ----~~--------k-----------------------------------------------~~--ah~~~il~C~lSPd  226 (311)
T KOG0315|consen  208 ----VH--------K-----------------------------------------------FQ--AHNGHILRCLLSPD  226 (311)
T ss_pred             ----hh--------h-----------------------------------------------ee--cccceEEEEEECCC
Confidence                00        0                                               00  16777888888899


Q ss_pred             CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      +++||+++ |.+++||+.++. +.-..+.+|...+..++||. |++||++|+.|+.+++|++..++.++...+|-....|
T Consensus       227 ~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc  305 (311)
T KOG0315|consen  227 VKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVC  305 (311)
T ss_pred             CcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEE
Confidence            99998887 889999998887 55567889999999999999 9999999999999999999999999999999988888


Q ss_pred             EEEc
Q 001258          908 LAFS  911 (1113)
Q Consensus       908 l~~s  911 (1113)
                      ++..
T Consensus       306 ~~ln  309 (311)
T KOG0315|consen  306 VALN  309 (311)
T ss_pred             EEee
Confidence            7763

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-33  Score=286.98  Aligned_cols=255  Identities=19%  Similarity=0.306  Sum_probs=226.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      .+..|++++|+.+|. +||+|+.||.++||+...+ ++.                   .+..|.++|.++.|+.+|.||+
T Consensus       234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l~~-------------------tl~~HkgPI~slKWnk~G~yil  292 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-LIS-------------------TLGQHKGPIFSLKWNKKGTYIL  292 (524)
T ss_pred             ccCCcceEEecCCCC-eEEEeecCcEEEEEecCch-hhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence            457899999999999 6999999999999997643 333                   5888999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +++.|+++.+||..+|+...   .+.-|..+-..|.|-.+..   |++++.|+.|+|+.+....++.++.+|.++|.++.
T Consensus       293 S~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  293 SGGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             eccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence            99999999999999998665   4666888878899988876   99999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC-CCCEEEEEecC
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD  595 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  595 (1113)
                      |++..  .+|++++.|+++++|..........+..|...|..+.|+|.|.             +..+| .+..+++++.|
T Consensus       367 ~n~tg--~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  367 WNPTG--SLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD  431 (524)
T ss_pred             ECCCC--ceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence            87654  7999999999999999999889999999999999999999986             33444 34568889999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceec
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  656 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  656 (1113)
                      ++|++||+..+.++..+..|  ..+|.+++|+|+|+++++|+.||.|.+|++.++ +.++.
T Consensus       432 stV~lwdv~~gv~i~~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s  489 (524)
T KOG0273|consen  432 STVKLWDVESGVPIHTLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKS  489 (524)
T ss_pred             CeEEEEEccCCceeEeeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccch-heeEe
Confidence            99999999999999999766  458999999999999999999999999999887 44443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=7.4e-33  Score=273.58  Aligned_cols=332  Identities=16%  Similarity=0.198  Sum_probs=263.1

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      +.....|+++|.+++.+|+.+ |++||+.|..-.||+..+|+...                   .+.+|.+.|+++.||.
T Consensus        57 ~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fsh  116 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSH  116 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEcc
Confidence            344445999999999999777 79999999999999999998665                   4889999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ||.+||+|+.+|.|+||+..++....   ++....+.|.-+.|.|-+.  +|+.|+.||.+.+|.+.++...+.+.||..
T Consensus       117 dgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~  191 (399)
T KOG0296|consen  117 DGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNS  191 (399)
T ss_pred             CceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCC
Confidence            99999999999999999999998666   4556677899999999888  899999999999999999888899999999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      ++++=.|.|  +|+.++++..||+|++|+..++.+...+....+                    ....++.++..+..++
T Consensus       192 ~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~--------------------~~~~~~~~~~~~~~~~  249 (399)
T KOG0296|consen  192 PCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG--------------------LELPCISLNLAGSTLT  249 (399)
T ss_pred             CcccccccC--CCceEEEEecCceEEEEecCCCceeEEeccccc--------------------CcCCccccccccceeE
Confidence            999998765  579999999999999999999877766543221                    1233444444555688


Q ss_pred             EEecCCcEEEEECCCCceEEEEccC------CCCCCcCe---EEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPR---IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  661 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~---~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1113)
                      .|..++.+++-+..+|+.+......      ++...+.|   +.++..-.+.|+|+-||+|.|||+....  ++      
T Consensus       250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R------  321 (399)
T KOG0296|consen  250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LR------  321 (399)
T ss_pred             eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch--hh------
Confidence            8888999998888888877766520      01112222   3333344455555666666666543220  00      


Q ss_pred             ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258          662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  741 (1113)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  741 (1113)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (399)
T KOG0296|consen  322 --------------------------------------------------------------------------------  321 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258          742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  821 (1113)
Q Consensus       742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v  821 (1113)
                                                                                         .  .  -.|...|
T Consensus       322 -------------------------------------------------------------------~--~--c~he~~V  330 (399)
T KOG0296|consen  322 -------------------------------------------------------------------H--I--CEHEDGV  330 (399)
T ss_pred             -------------------------------------------------------------------e--e--ccCCCce
Confidence                                                                               0  0  0167778


Q ss_pred             cEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                      ..+.|-+ ..+|++++ +|.|+.||.++|++..++.+|...|.+++++| +.+++++++.|++.+||+..
T Consensus       331 ~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  331 TKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            8888887 56777776 99999999999999999999999999999999 89999999999999999864

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=9.8e-34  Score=277.98  Aligned_cols=254  Identities=18%  Similarity=0.289  Sum_probs=224.3

Q ss_pred             CCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258          345 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1113)
Q Consensus       345 ~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  423 (1113)
                      ...|-++.+.+. |.+.|.|+++-|-.+ ++++|+.|++|.|||+.+|+...                   .+.||-..|
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~v  196 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETV  196 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhhee
Confidence            344666767766 999999999999988 49999999999999999999876                   489999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      ..+++|+--.||++++.|+.|+-||+...+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+.
T Consensus       197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence            999999999999999999999999999998877   6889999999999999988  89999999999999999999999


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      .+.||..+|..+.+.+..  ..+++|+.|++|++||+..++....+..|...+.+++..|...                 
T Consensus       272 ~l~GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~-----------------  332 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKEN-----------------  332 (460)
T ss_pred             EecCCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchh-----------------
Confidence            999999999999876543  5899999999999999999888888887777777766666543                 


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                          .+++++.| .|+-|++..|..+..+.+|  ...|++++.+.|+ ++++|++.|.+.+||..++
T Consensus       333 ----~fASas~d-nik~w~~p~g~f~~nlsgh--~~iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  333 ----LFASASPD-NIKQWKLPEGEFLQNLSGH--NAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             ----hhhccCCc-cceeccCCccchhhccccc--cceeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence                56666654 6899999999999988766  4578899998876 7888999999999999988

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-32  Score=293.50  Aligned_cols=445  Identities=15%  Similarity=0.251  Sum_probs=317.4

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      +...+..|..++|+|..-+++++-..|.|++||.+-+.++.   .|.+|.++|..++|.|++.  +|+|||+|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            44456789999999999999999999999999999988777   7889999999999999999  899999999999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  575 (1113)
                      ..+.+|+.++.||.+.|..+.|++..  .+|+|+|.|.+|+||++.+.+++..+.+|.+.|.+..|.|...         
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptED---------  148 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED---------  148 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccc---------
Confidence            99999999999999999999998766  6999999999999999999999999999999888888777544         


Q ss_pred             ceeEEEecCCCCEEEEEecCCcEEEEECCCCce---------------------------EEEEccCCCCCCcCeEEECC
Q 001258          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~  628 (1113)
                                  .+++++-|.+|++||+...+.                           +..+-..+|...|+.++|+|
T Consensus       149 ------------lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  149 ------------LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             ------------eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence                        699999999999999853221                           11111223344566677777


Q ss_pred             CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258          629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  708 (1113)
Q Consensus       629 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1113)
                      .-.++++|++|..|++|.....                                                          
T Consensus       217 TlpliVSG~DDRqVKlWrmnet----------------------------------------------------------  238 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNET----------------------------------------------------------  238 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence            6677777777777777754322                                                          


Q ss_pred             cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258          709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  788 (1113)
Q Consensus       709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  788 (1113)
                                        +.|.+++      +       .+|.+.|+++.|+|..+.+++.+.|++|+|||+...+.   
T Consensus       239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~---  284 (1202)
T KOG0292|consen  239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS---  284 (1202)
T ss_pred             ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccccc---
Confidence                              1233321      1       45899999999999999999999999999999874321   


Q ss_pred             CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEe
Q 001258          789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH  868 (1113)
Q Consensus       789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s  868 (1113)
                                         +.. +..  ..+.-..++..|..+++++|.|+.+.||.++...          ++.  +.+
T Consensus       285 -------------------v~t-frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~  330 (1202)
T KOG0292|consen  285 -------------------VQT-FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN  330 (1202)
T ss_pred             -------------------eee-eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence                               000 111  4567788999999999999999989998876422          222  333


Q ss_pred             cCCCcEEEEEecCCcEEEEEcccce--eeeeeccc---ccCeEEEEEcCCCCEEEEE-eCC-CcEEEEeCCCCccccccc
Q 001258          869 PQDNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGH---SKRITGLAFSHALNVLVSS-GAD-SQLCVWSSDGWEKQKNRF  941 (1113)
Q Consensus       869 ~~d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h---~~~V~~l~~s~d~~~L~s~-s~D-~~v~iwd~~~~~~~~~~~  941 (1113)
                        ++ .|...- |..|+-+|+.+.+  .+..++.-   ..++.++.++|....+..+ ..| ++--++.+..........
T Consensus       331 --~n-~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~  406 (1202)
T KOG0292|consen  331 --GN-GLFYVK-DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG  406 (1202)
T ss_pred             --CC-EEEEEc-cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence              33 333333 8899999998844  33444433   3678889999865544433 333 333344332211000000


Q ss_pred             cccCCC---------------------------------C-CCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceee
Q 001258          942 LQIPTG---------------------------------R-TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  987 (1113)
Q Consensus       942 ~~~~~~---------------------------------~-~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~  987 (1113)
                      .....+                                 . .........+-+.-+|.+|+ .+...|.+||+.....+.
T Consensus       407 ~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~ag~g~lll-~~~~~v~lfdvQq~~~~~  485 (1202)
T KOG0292|consen  407 KDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFYAGTGNLLL-RSPDSVTLFDVQQKKKVG  485 (1202)
T ss_pred             hhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceeeccCccEEE-EcCCeEEEEEeecceEEE
Confidence            000000                                 0 00000122333333443333 345678899999888888


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      .+.    -..|.-+.||+|..+++.-+ -.+|.|.+.
T Consensus       486 si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~k  517 (1202)
T KOG0292|consen  486 SIK----VSKVKYVVWSNDMSRVALLS-KHTITIADK  517 (1202)
T ss_pred             EEe----cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence            776    56899999999998877665 456777664

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-32  Score=259.32  Aligned_cols=246  Identities=19%  Similarity=0.334  Sum_probs=197.8

Q ss_pred             EeccCCCCcEEEEEcCC-CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          353 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spd-g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      .+-+|+++|+.++|+|- |. +||+++.|..|+||+...+.....               ...+-.+|+..|+.++|+|.
T Consensus         9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~   72 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH   72 (312)
T ss_pred             eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence            34459999999999999 77 799999999999999885332221               11234689999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---ceeeEeecc
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH  508 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h  508 (1113)
                      |++||+|+.|.++.||.-..++ +....++.||...|.|++|+++|.  +||+++.|++|-||.+..+   .++..++.|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9999999999999999877654 556778999999999999999999  8999999999999998754   567789999


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ...|..+.|+|+.  .+|++++.|.+|++|+-...   .+..++..+...|.+++|.+                     .
T Consensus       150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~---------------------~  206 (312)
T KOG0645|consen  150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDN---------------------I  206 (312)
T ss_pred             cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecC---------------------C
Confidence            9999999999987  49999999999999976631   23445555555555555554                     4


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      |..|++++.|++++||...+.     +. ..+...+..++|.  ...|++++.|+.|+++...
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            457999999999999986522     11 1223467788888  5589999999999999654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=4.9e-33  Score=267.76  Aligned_cols=257  Identities=18%  Similarity=0.228  Sum_probs=219.7

Q ss_pred             CCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       347 ~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      +........+|+++|+.+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|.+.|..+
T Consensus        36 l~ap~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l   96 (338)
T KOG0265|consen   36 LQAPIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMEL   96 (338)
T ss_pred             ccchhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEee
Confidence            4445566778999999999999999 59999999999999976432211                  1578999999999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      .|.+|++.|++++.|.+|+.||.++|++.+   .+++|.+-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++.
T Consensus        97 ~~~~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~  172 (338)
T KOG0265|consen   97 HGMRDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE  172 (338)
T ss_pred             eeccCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc
Confidence            999999999999999999999999999877   68899999999997777776 78999999999999999999988885


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  586 (1113)
                       ..-.+++++|..  .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.                    
T Consensus       173 -~kyqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs--------------------  229 (338)
T KOG0265|consen  173 -NKYQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGS--------------------  229 (338)
T ss_pred             -cceeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCC--------------------
Confidence             456788888764  446899999999999999999999999999999999988888887                    


Q ss_pred             CEEEEEecCCcEEEEECCC----CceEEEEccCCCCCC--cCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          587 NRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                       ++++-+.|.++++||++.    .+++..+.++.+.-+  ...++|+|+++.+.+|+.|..+++||....
T Consensus       230 -~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  230 -FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             -ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence             688999999999999875    345777776655433  347899999999999999999999997654

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.1e-33  Score=266.26  Aligned_cols=296  Identities=19%  Similarity=0.293  Sum_probs=241.2

Q ss_pred             ccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258          412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1113)
Q Consensus       412 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  491 (1113)
                      ....+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++....  ....++++|++.|..+.|.+|+.  .++++|.|++|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v  114 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV  114 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence            334688999999999999999999999999999999976532  24447889999999999999999  79999999999


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecC-CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      +.||+++|++++.+++|..-|++++  |.. +-.++.+++.||++++||+++.+...++.. ...++++.|..++     
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~--p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s-----  186 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLD--PSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTS-----  186 (338)
T ss_pred             EEEecccceeeehhccccceeeecC--ccccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccc-----
Confidence            9999999999999999999999998  333 335778899999999999998766655432 2345555555544     


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                      ..+++|+-|+.|++||++.+.....+.+|  ...|+.+..+++|.++.+-+.|.++++||++.-
T Consensus       187 ----------------~qv~sggIdn~ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~  248 (338)
T KOG0265|consen  187 ----------------DQVISGGIDNDIKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF  248 (338)
T ss_pred             ----------------cceeeccccCceeeeccccCcceEEeecc--cCceeeEEeccCCCccccccccceEEEEEeccc
Confidence                            46999999999999999999999999877  558999999999999999999999999997532


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                      ....                                                                     ..+.++ 
T Consensus       249 ~p~~---------------------------------------------------------------------R~v~if-  258 (338)
T KOG0265|consen  249 APSQ---------------------------------------------------------------------RCVKIF-  258 (338)
T ss_pred             CCCC---------------------------------------------------------------------ceEEEe-
Confidence            0000                                                                     000000 


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                           .+. .                                      
T Consensus       259 -------------------------------------~g~-~--------------------------------------  262 (338)
T KOG0265|consen  259 -------------------------------------QGH-I--------------------------------------  262 (338)
T ss_pred             -------------------------------------ecc-h--------------------------------------
Confidence                                                 000 0                                      


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                          .+.......++|+|+++.+.+|+ |..+.+||......+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=.
T Consensus       263 ----hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  263 ----HNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             ----hhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEeec
Confidence                00122345678999999999998 99999999999999999999999999999999 888999999999998743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2e-29  Score=269.06  Aligned_cols=499  Identities=14%  Similarity=0.155  Sum_probs=359.5

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-CCcceEEEEEcCCCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l  435 (1113)
                      -..+|.|||||.+.+. ||.+-.+|.|.||++..+=..                  ..++.+ ....|.+++|+ +|..|
T Consensus        24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~------------------~~vi~g~~drsIE~L~W~-e~~RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFL------------------EPVIHGPEDRSIESLAWA-EGGRL   83 (691)
T ss_pred             eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCcee------------------eEEEecCCCCceeeEEEc-cCCeE
Confidence            4578999999999995 999999999999999864222                  123444 45789999999 56678


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee--EeeccCcCEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY  513 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~  513 (1113)
                      .+.+.+|.|.-||+.+++.+.   .+....+.|++++.+|.+.  .++.|++||.+...+...++..+  .|....+.|.
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            888899999999999987665   6777888999999999998  68999999988888877776654  4455678999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--------CCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ++.|+++  +..+++|+.||.|++||...+........        ....|.++.+-.++                    
T Consensus       159 slsw~~~--~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------  216 (691)
T KOG2048|consen  159 SLSWNPT--GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------  216 (691)
T ss_pred             EEEecCC--ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------------------
Confidence            9998754  46799999999999999998776652111        11234444444444                    


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1113)
                        .+++|...|+|.+||...+.+++.+..+.  ..|.+++..+++.++++++.|+.|..+...++...            
T Consensus       217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------  280 (691)
T KOG2048|consen  217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------  280 (691)
T ss_pred             --cEEEecCCceEEEEcccCcchhhhhhhhh--cceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence              39999999999999999999999988774  47999999999999999999999988876655210            


Q ss_pred             ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258          666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  745 (1113)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  745 (1113)
                                                                                     |-..            .
T Consensus       281 ---------------------------------------------------------------wv~~------------~  285 (691)
T KOG2048|consen  281 ---------------------------------------------------------------WVIN------------S  285 (691)
T ss_pred             ---------------------------------------------------------------eeee------------c
Confidence                                                                           1000            0


Q ss_pred             CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE-E
Q 001258          746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-F  824 (1113)
Q Consensus       746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~-l  824 (1113)
                      ....|...|.+++..++  .+++++.|..+.+-.......              .+   ... .       ....-.+ +
T Consensus       286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~-~-------~~~p~~~~v  338 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQ-K-------NLFPASDRV  338 (691)
T ss_pred             cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhc-c-------cccccccee
Confidence            01237788889988887  689999998888754321000              00   000 0       0001111 2


Q ss_pred             EEecCCCEEEEEeCCeEEEEECCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          825 ALSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       825 ~~s~~~~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      ...+..+.++.-.+..+.+|.+.+...         .+-.......|.|.+.|| +|+++|.+. -..++||.+.....+
T Consensus       339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st-~~~~~iy~L~~~~~v  416 (691)
T KOG2048|consen  339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIST-VSRTKIYRLQPDPNV  416 (691)
T ss_pred             ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEee-ccceEEEEeccCcce
Confidence            333444444444477888888765411         122233455699999999 999999886 347888888752222


Q ss_pred             e--e---ecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          896 S--K---LKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       896 ~--~---l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      .  .   .....-.+..+.|+-|++.++.++ .+..+.+.++++............    .....|..++.||||.|+|+
T Consensus       417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa  492 (691)
T KOG2048|consen  417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA  492 (691)
T ss_pred             eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence            1  1   122334577889999999988888 677888888877543221111111    22357999999999999999


Q ss_pred             -EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCCc
Q 001258          970 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus       970 -~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
                       +.++.|.+|++++++......  .-...|+.++|+| +...|+.+..|+.|.-||++..+
T Consensus       493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence             699999999999988755542  1257899999995 55678888899999999995544

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-33  Score=280.15  Aligned_cols=293  Identities=18%  Similarity=0.281  Sum_probs=241.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      ++..|++.|+-+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||++  ++++|+.|..+++|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            6889999999999999999999999999999999987776777889999999999999999999  79999999999999


Q ss_pred             eCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          495 DATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       495 d~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      |+.+|.+.+.+. +|...+.+++|.|  ||..+++|+.|+.+..||++... ...                    +.+.+
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~-~~~--------------------W~gvr  353 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNI-LGN--------------------WEGVR  353 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcch-hhc--------------------ccccc
Confidence            999999988774 4568899999875  45789999999999999987432 111                    22222


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                      ...+..+++.+||.++++.+.|..|++++..+......+..+   ..|++++.|.|++++++.-.+..+++||+... ..
T Consensus       354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---~~its~~iS~d~k~~LvnL~~qei~LWDl~e~-~l  429 (519)
T KOG0293|consen  354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---QPITSFSISKDGKLALVNLQDQEIHLWDLEEN-KL  429 (519)
T ss_pred             cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---CceeEEEEcCCCcEEEEEcccCeeEEeecchh-hH
Confidence            234555555666668999999999999999887666555443   36899999999999999999999999999865 55


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ++.+.||..                                                                       
T Consensus       430 v~kY~Ghkq-----------------------------------------------------------------------  438 (519)
T KOG0293|consen  430 VRKYFGHKQ-----------------------------------------------------------------------  438 (519)
T ss_pred             HHHhhcccc-----------------------------------------------------------------------
Confidence            555555432                                                                       


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                                   +.+++-.                                            
T Consensus       439 -----------------------------~~fiIrS--------------------------------------------  445 (519)
T KOG0293|consen  439 -----------------------------GHFIIRS--------------------------------------------  445 (519)
T ss_pred             -----------------------------cceEEEe--------------------------------------------
Confidence                                         1111111                                            


Q ss_pred             CCCCCCCccEEEEe-cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          814 DSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s-~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                                 ||. .+.+++++|+ |++|+||+..+++.+.++.+|...|+||+|+|.+..++|+|++||+|+||....
T Consensus       446 -----------CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  446 -----------CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             -----------ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence                       111 2557899999 899999999999999999999999999999999999999999999999997653

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.1e-33  Score=305.82  Aligned_cols=274  Identities=15%  Similarity=0.224  Sum_probs=236.4

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....+.|+.|++|+..++.+..|..|++|.+...+..+                        ++   +...+        
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~------------------------lk---~~~~l--------  421 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKK------------------------LK---DASDL--------  421 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhcc------------------------cc---chhhh--------
Confidence            45678999999999999999999999999875321100                        00   01111        


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  908 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  908 (1113)
                       ..+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus       422 -~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  422 -SNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             -ccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence             1111222 33366777777777788999999999999999 89999999999999999999999999999999999999


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceee
Q 001258          909 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVK  987 (1113)
Q Consensus       909 ~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~  987 (1113)
                      .|+|-|-++||+|.|++-++|..+.     ..++.+..+|..   .|.|+.|+|++.|+++ +.|.++++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~-----~~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDH-----NKPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeeccc-----CCchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            9999999999999999999999888     345777888875   8999999999999999 589999999999999999


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                      .|.  ||.++|++++|||+|++|++|+.||.|.+||+.+++++..+.       +|.+.|.+  +.|+. ||..||+|+.
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~ti~S--lsFS~-dg~vLasgg~  639 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGTIYS--LSFSR-DGNVLASGGA  639 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCceeE--EEEec-CCCEEEecCC
Confidence            997  899999999999999999999999999999999999999988       99999996  77777 8999999999


Q ss_pred             CCcEEEEeccCCC
Q 001258         1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus      1068 Dg~v~vW~~~~~~ 1080 (1113)
                      |++|++||+....
T Consensus       640 DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  640 DNSVRLWDLTKVI  652 (707)
T ss_pred             CCeEEEEEchhhc
Confidence            9999999987655

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.7e-30  Score=266.54  Aligned_cols=432  Identities=18%  Similarity=0.244  Sum_probs=316.9

Q ss_pred             eeEecc-CCCCcEEEEEcCC--CCeEEEEE-ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          351 VTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       351 ~~~~~~-h~~~V~~~~~spd--g~~ll~~g-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      ..+.++ -...|+|++||+-  |.+|++.- +.+..+.|||+..+.....                   ...-+..|...
T Consensus       146 TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~v~~a  206 (626)
T KOG2106|consen  146 TLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEVVFLA  206 (626)
T ss_pred             eeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccceEEEE
Confidence            345555 5678999999974  45433332 3356788999998776542                   23345678999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  505 (1113)
                      +|.|.+.-|+.....+.+..|+++++...+....+.++. .-|.|++|.++|.   ++||..+|.|.||+..+.+..+..
T Consensus       207 ~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~~k~~  283 (626)
T KOG2106|consen  207 TFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRISKQV  283 (626)
T ss_pred             EeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceEEeEe
Confidence            999966655555557889999999998877666666554 4799999999998   899999999999998877777776


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee--eeCCCCceEEEEEcc-------------------C
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSA-------------------D  564 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~-------------------~  564 (1113)
                      ..|.+.|.+++..  .+| .|++|+.|..|..|| ..-+.+..  ++...+.+..++-..                   .
T Consensus       284 ~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~  359 (626)
T KOG2106|consen  284 HAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG  359 (626)
T ss_pred             eecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence            7999999999964  444 577799999999998 33333322  222233444333211                   1


Q ss_pred             CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEE
Q 001258          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  644 (1113)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  644 (1113)
                      -+.+..+|.+ ..+.++.+|+.+++++++.|+.+++|+  ..+++......   .++.|+.|+|.| .++.|+..|...+
T Consensus       360 f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~---d~~~~~~fhpsg-~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  360 FTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE---DPAECADFHPSG-VVAVGTATGRWFV  432 (626)
T ss_pred             ceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---CceeEeeccCcc-eEEEeeccceEEE
Confidence            1133344444 777889999999999999999999999  44444443322   357899999999 9999999999999


Q ss_pred             EEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCC
Q 001258          645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  724 (1113)
Q Consensus       645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  724 (1113)
                      .|.++. ..+...                                                                   
T Consensus       433 ~d~e~~-~lv~~~-------------------------------------------------------------------  444 (626)
T KOG2106|consen  433 LDTETQ-DLVTIH-------------------------------------------------------------------  444 (626)
T ss_pred             Eecccc-eeEEEE-------------------------------------------------------------------
Confidence            988764 222111                                                                   


Q ss_pred             ceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCC
Q 001258          725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  804 (1113)
Q Consensus       725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~  804 (1113)
                                              ....+++.+.|+|+|.+++.++.|+.|++|.++...                    
T Consensus       445 ------------------------~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g--------------------  480 (626)
T KOG2106|consen  445 ------------------------TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG--------------------  480 (626)
T ss_pred             ------------------------ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC--------------------
Confidence                                    024678999999999999999999999999886432                    


Q ss_pred             ccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeee--------------e----cCCCCCeeEE
Q 001258          805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPAATFL  865 (1113)
Q Consensus       805 g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~--------------~----~~~~~~i~~l  865 (1113)
                       +.....-..  +...|+.+.||+|++++.+-+ |-.|..|.....+....              |    -.+...|..+
T Consensus       481 -~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~  557 (626)
T KOG2106|consen  481 -RKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAV  557 (626)
T ss_pred             -cEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHh
Confidence             221111111  447899999999999999998 88899995433322211              1    1234456777


Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcccce---eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          866 AFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       866 ~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      +-+. +.+++|+|.+.|.|++|...-.+   ...++.+|++.|++++|.-+...|++.+.|..|..|++
T Consensus       558 ~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  558 ARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            7777 78899999999999999876433   34667899999999999988889998889999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.8e-32  Score=267.79  Aligned_cols=294  Identities=16%  Similarity=0.316  Sum_probs=244.8

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      ++.+|.+.|.|+++.|-+.+|++|+.|++|+|||+.+|+...   ++.||...|..+++|+-..  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            688999999999999999999999999999999999998655   7899999999999999888  89999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++|+.|.++++||+++...+..+.+|...|.++.+.|-..        
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp--------  290 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP--------  290 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC--------
Confidence            999999999999999999999998876  5899999999999999999999999999999888887765332        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                   .+++|+.|++|++||+..|+....+..|.  ..|.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus       291 -------------qvit~S~D~tvrlWDl~agkt~~tlt~hk--ksvral~lhP~e~~fASas~d-nik~w~~p~g-~f~  353 (460)
T KOG0285|consen  291 -------------QVITGSHDSTVRLWDLRAGKTMITLTHHK--KSVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL  353 (460)
T ss_pred             -------------ceEEecCCceEEEeeeccCceeEeeeccc--ceeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence                         49999999999999999999999988774  479999999999999998886 6888988776 222


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+.                                                                            
T Consensus       354 ~nls----------------------------------------------------------------------------  357 (460)
T KOG0285|consen  354 QNLS----------------------------------------------------------------------------  357 (460)
T ss_pred             hccc----------------------------------------------------------------------------
Confidence            2222                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                    +|..-|.+++...|+- +++|+++|.+..||+..+..-..+....         .-|.        
T Consensus       358 --------------gh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS--------  405 (460)
T KOG0285|consen  358 --------------GHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS--------  405 (460)
T ss_pred             --------------cccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence                          2555667777777764 7788888999999987542211111000         0011        


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  848 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~  848 (1113)
                      ...+..|.+.+|...|..|++|. |.+|++|.-+.
T Consensus       406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            11456799999999999999998 99999998653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.7e-29  Score=266.99  Aligned_cols=503  Identities=13%  Similarity=0.167  Sum_probs=345.7

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      ..+|.+||||.+.+.||.+-.||.|.||++..+=....  .+.++. ..|.+++|++.++   |.+.+.+|+|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            34899999999999999999999999999998644433  455554 4899999997776   89999999999999999


Q ss_pred             CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee--eeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                      ++.+..+....+.|++++.++..  ..++.|+.||.+..++.........  +......+.                   
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL-------------------  158 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL-------------------  158 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEE-------------------
Confidence            99999999999999999988765  6899999999777777665433322  222223444                   


Q ss_pred             eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEc-----cCC-CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                        ++.|+|++..+++|+.||.|++||...+..+....     ... ...-|.++.|-.+ ..|++|.+-|+|.+||...+
T Consensus       159 --slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g  235 (691)
T KOG2048|consen  159 --SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG  235 (691)
T ss_pred             --EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc
Confidence              45555555579999999999999999988776322     111 1223455555544 46888888889999987766


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       .+++.+.                                                                        
T Consensus       236 -TLiqS~~------------------------------------------------------------------------  242 (691)
T KOG2048|consen  236 -TLIQSHS------------------------------------------------------------------------  242 (691)
T ss_pred             -chhhhhh------------------------------------------------------------------------
Confidence             3332221                                                                        


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                        .|...|.+++.++++.++++++.|+.+..|........             |-..       
T Consensus       243 ------------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~-------  284 (691)
T KOG2048|consen  243 ------------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVIN-------  284 (691)
T ss_pred             ------------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeee-------
Confidence                              16678999999999999999999998887765432110             2111       


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE-EEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                       .....|...|.+++..++  .+++|+ |.++.+-.....+...........-.+ +...|  .++|..--.+..+.+|.
T Consensus       285 -~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwr  359 (691)
T KOG2048|consen  285 -SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWR  359 (691)
T ss_pred             -ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEecccccccee
Confidence             111238889999999887  777777 888777655432211111100011111 22222  34555555566788887


Q ss_pred             cccce---------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258          889 VRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  959 (1113)
Q Consensus       889 ~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  959 (1113)
                      +.+.-         +++....-...|.+.+.||||++++.+.- ..++||.++.....+...........   .....+.
T Consensus       360 lGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~  435 (691)
T KOG2048|consen  360 LGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAIS  435 (691)
T ss_pred             ccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeE
Confidence            76541         12222223456899999999999997764 34788888764432222221111111   2457788


Q ss_pred             EccCCcEEEE-E-cCCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          960 FHQDQIHFLV-V-HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       960 ~spdg~~l~~-~-~d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      |+-|+..++. + ....+.++++.+...  +..+...+-...|..+..|+||.||++.+.+|.|.+|++++++...-.. 
T Consensus       436 ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-  514 (691)
T KOG2048|consen  436 FTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-  514 (691)
T ss_pred             EEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-
Confidence            8988887776 4 677888888876543  2223322335689999999999999999999999999999987765432 


Q ss_pred             CcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1036 SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1036 ~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                            .....|+  +.+|+|.+-+.|+.+..|+.++-+|++...
T Consensus       515 ------rln~~vT--a~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  515 ------RLNIDVT--AAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             ------ccCccee--eeeccccccCcEEEEecCCeEEEEecchhh
Confidence                  2223445  477777677789999999999999994433

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-31  Score=253.31  Aligned_cols=293  Identities=15%  Similarity=0.212  Sum_probs=239.9

Q ss_pred             ccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258          748 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  826 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~  826 (1113)
                      .+|.+++..++++|. |..|++++.|..|++|+.....                     ..........+|...|++++|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---------------------s~~ck~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---------------------SWTCKTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC---------------------cEEEEEeccccchheeeeeee
Confidence            348889999999999 8999999999999999875210                     011111122259999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEECC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeeeeecc
Q 001258          827 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG  900 (1113)
Q Consensus       827 s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~  900 (1113)
                      +|.|++|++++ |.++.||.-.  ..+++.++++|...|.|++|++ +|++||+++.|..|-||.+..   .++...+.+
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999 9999999875  4578899999999999999999 999999999999999999975   467889999


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258          901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  979 (1113)
Q Consensus       901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d  979 (1113)
                      |...|..+.|+|...+|+|+|.|.+|++|+-..  .....+.+.+.+|..   .|.+++|++.|..|++ +.|++++||.
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999999999999999999998774  233667778888874   7999999999999888 5889999998


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      ..+.      ...-|...++.+.|.  ...|++++.|+.|++|.-...-.-..+.........|...|.+  +.|.|.-+
T Consensus       224 ~~~~------~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNs--V~w~p~~~  293 (312)
T KOG0645|consen  224 LYTD------LSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNS--VQWNPKVS  293 (312)
T ss_pred             eccC------cchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccce--EEEcCCCC
Confidence            6521      123578899999998  5689999999999999876532222222222233467777775  89999657


Q ss_pred             CEEEEEeCCCcEEEEecc
Q 001258         1060 NEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      ++|++|+.||.|++|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            899999999999999875

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.7e-32  Score=274.51  Aligned_cols=283  Identities=17%  Similarity=0.260  Sum_probs=241.0

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....|..+.|.|+|+.|++++..|...+|+...-.|                         +..-..|...|+++.|+++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnF-------------------------EtilQaHDs~Vr~m~ws~~  149 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNF-------------------------ETILQAHDSPVRTMKWSHN  149 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeH-------------------------HHHhhhhcccceeEEEccC
Confidence            456889999999999999999999999997531111                         1111239999999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      |.++++|+ +|.|++|+..- ..++.+..|. ..|++++||| ....++++++||+|+|||....+.-..+.||.-.|.+
T Consensus       150 g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks  227 (464)
T KOG0284|consen  150 GTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS  227 (464)
T ss_pred             CCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence            99999999 89999999864 3444555554 8899999999 5667889999999999999988888899999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcccee
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  986 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~  986 (1113)
                      ++|+|...+|||+|.|..|++||.+++.+     +....+|..   .|..+.|+|++.+|++ +.|..+++||+++.+.+
T Consensus       228 vdWHP~kgLiasgskDnlVKlWDprSg~c-----l~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl  299 (464)
T KOG0284|consen  228 VDWHPTKGLIASGSKDNLVKLWDPRSGSC-----LATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKEL  299 (464)
T ss_pred             eccCCccceeEEccCCceeEeecCCCcch-----hhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHH
Confidence            99999999999999999999999999654     556666664   8999999999999999 69999999999988877


Q ss_pred             eccccCCCCCCeeEEEECCC-CCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          987 KQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       987 ~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      ..+.  +|...|++++|+|- ..++.+|+.||.|..|.+...+.+..      .+.+|...|++  ++|+| =|.+|++|
T Consensus       300 ~~~r--~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~------i~~AHd~~iws--l~~hP-lGhil~tg  368 (464)
T KOG0284|consen  300 FTYR--GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGE------IPPAHDGEIWS--LAYHP-LGHILATG  368 (464)
T ss_pred             HHhh--cchhhheeeccccccccceeeccCCCceEEEeccccccccC------CCcccccceee--eeccc-cceeEeec
Confidence            7766  89999999999995 45788999999999999985555533      44589999996  99999 68999999


Q ss_pred             eCCCcEEEEeccC
Q 001258         1066 LSDGGVHVFEPLE 1078 (1113)
Q Consensus      1066 ~~Dg~v~vW~~~~ 1078 (1113)
                      +.|.++++|.-..
T Consensus       369 snd~t~rfw~r~r  381 (464)
T KOG0284|consen  369 SNDRTVRFWTRNR  381 (464)
T ss_pred             CCCcceeeeccCC
Confidence            9999999997543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-31  Score=246.35  Aligned_cols=253  Identities=19%  Similarity=0.262  Sum_probs=218.5

Q ss_pred             CCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258          346 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  424 (1113)
Q Consensus       346 ~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  424 (1113)
                      .+|.+..+++. |.+.|.++.|+-||+| .++++.|.+|++|+...|.+++                   ...+|..+|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceee-------------------eecCCCceee
Confidence            34555556666 9999999999999997 7777789999999999999887                   4789999999


Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC--Ccee
Q 001258          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQ  502 (1113)
Q Consensus       425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~--~~~~  502 (1113)
                      .++.+.|...+++|+.|+.|.+||+.+|+.++   .+++|.+.|+.++|+.+..  ++++|+.|.++++||.++  .+++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999999887   7999999999999999998  899999999999999885  5678


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  582 (1113)
                      +.+....+.|.++.+..    ..|++|+.||+++.||++.+.....+  -+.+|++++|++|+                 
T Consensus       139 Qildea~D~V~Si~v~~----heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~-----------------  195 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDVAE----HEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDG-----------------  195 (307)
T ss_pred             chhhhhcCceeEEEecc----cEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCC-----------------
Confidence            88888889999988542    57999999999999999975543322  23445555555554                 


Q ss_pred             cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                          +..++++.|+++++.|-.+|+++..+++|.....=..++++.....+++|+.||.+.+||+.+.
T Consensus       196 ----nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  196 ----NCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             ----CEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence                5789999999999999999999999998877655567888888999999999999999999877

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.2e-31  Score=300.24  Aligned_cols=288  Identities=26%  Similarity=0.421  Sum_probs=246.3

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      +...|.++.|+++|+.+++++.++.+++|+......                     .....+.  +|...|.+++|+|+
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------------~~~~~l~--~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------------NLLRELS--GHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------------hhhcccc--ccccceeeeEECCC
Confidence            467899999999999999999999999998742110                     0111122  39999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEC-CCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          830 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      ++++++++ |++|++||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+.+++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999999 899999999 56689999999999999999999 6799999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCcccee
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  986 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~  986 (1113)
                      ++|++|+++|++++.|+.|+|||+.++...   +.....++.... .++.++|+|++++++++ .|+.+++||+..+.++
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997643   334444444433 68999999999999995 7779999999999999


Q ss_pred             eccccCCCCC---CeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEE
Q 001258          987 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus       987 ~~~~~~~h~~---~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l 1062 (1113)
                      ..+.  +|..   .+.+..+++.++++++|+.|+.|++|++.++..+.++.       +| ...+.  .+.++| ..+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence            9887  4433   56667778999999999999999999999999998887       88 55555  478888 57889


Q ss_pred             EEEe--CCCcEEEEecc
Q 001258         1063 ALGL--SDGGVHVFEPL 1077 (1113)
Q Consensus      1063 ~s~~--~Dg~v~vW~~~ 1077 (1113)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            8888  79999999754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=268.61  Aligned_cols=232  Identities=20%  Similarity=0.359  Sum_probs=204.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ..+.|.|+++..+   .+++|..|++|.|||..+-+++.                   ++.||++.|.|+.|  |.+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence            4578999998543   38999999999999998877765                   68999999999999  577999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce---eeEeeccCcCEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY  513 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~  513 (1113)
                      +|+.|.+|+|||+++|++++   ++-+|...|..+.|+..    +++++|.|.++.+||+.+...   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   78899999999999843    799999999999999987653   357789999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      .+.|.  .  +++++++.|.+|++|++.+.+.+.++.+|...|.++.+.                       ++++++|+
T Consensus       325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr-----------------------~rlvVSGS  377 (499)
T KOG0281|consen  325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSGS  377 (499)
T ss_pred             eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc-----------------------CeEEEecC
Confidence            99863  2  599999999999999999999999999998888776652                       23689999


Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .|.+|++||+..|.++..+++|..  -|.|+.|.  .+.+++|..||+|++||+.++
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd--~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD--NKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHH--hhhheeec--CceeeeccccceEEEEecccc
Confidence            999999999999999999988754  69999995  678999999999999999876

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.5e-32  Score=278.76  Aligned_cols=290  Identities=19%  Similarity=0.307  Sum_probs=248.6

Q ss_pred             cccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  492 (1113)
                      .+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++   ++.+|..+|.+++|+++|.  .|.|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            6889999999999999 999999999999999999987 66666   8999999999999999999  699999999999


Q ss_pred             EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      +||+++|+++..+. -...+.++.|+|++ -+.+++|+.|+.|+.||+++++.+..+..|-+.|..+.|-++|+      
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------  355 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------  355 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence            99999999999887 45677889988876 37899999999999999999998889998989899888888887      


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                                     ++++.++|++++||+......+....... .....++..+|++.++++-+.|+.|.++.+....+
T Consensus       356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             ---------------eEeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence                           69999999999999998877665543322 23578999999999999999999999997543311


Q ss_pred             c--eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          653 L--LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       653 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                      .  .+.+++|                                                                      
T Consensus       420 ~nkkK~feGh----------------------------------------------------------------------  429 (503)
T KOG0282|consen  420 LNKKKRFEGH----------------------------------------------------------------------  429 (503)
T ss_pred             cCHhhhhcce----------------------------------------------------------------------
Confidence            0  0011110                                                                      


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                                                                      
T Consensus       430 --------------------------------------------------------------------------------  429 (503)
T KOG0282|consen  430 --------------------------------------------------------------------------------  429 (503)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                           .-.+.-..+.|||||.+|++|+ ||.+.+||.++.+.+..+.+|...++.+.|+|.....+|+++.||.|++||
T Consensus       430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                 0122334688999999999998 999999999999999999999999999999998788999999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.7e-31  Score=298.40  Aligned_cols=256  Identities=21%  Similarity=0.375  Sum_probs=212.7

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc--eeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      |...|.|+.|||+|++ +++++.++.+++|+..+++  .+.                   .+.+|...|.+++|+|||++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            4789999999999996 9999999999999997665  222                   35899999999999999999


Q ss_pred             EEEEeCCCeEEEEEc-cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258          435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1113)
Q Consensus       435 las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  513 (1113)
                      +++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+++  ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            999999999999999 4445555   7899999999999999997  899999999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      +++|+  +++.+|++++.|+.|++||+.++..  ...+..+...                  . .+..+.|+|++.++++
T Consensus       293 ~~~f~--~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------------------~-~~~~~~fsp~~~~ll~  351 (456)
T KOG0266|consen  293 GLAFS--PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------------------A-PVTSVQFSPNGKYLLS  351 (456)
T ss_pred             EEEEC--CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------------------C-ceeEEEECCCCcEEEE
Confidence            99965  5568999999999999999998773  2333332222                  0 2344455555558999


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCC-CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      ++.|+.+++||+..+.....+..+... ..+.+...++.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus       352 ~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~  419 (456)
T KOG0266|consen  352 ASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG  419 (456)
T ss_pred             ecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence            999999999999999999988877543 23445556789999999999999999999886 44444444

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2e-30  Score=240.47  Aligned_cols=285  Identities=17%  Similarity=0.274  Sum_probs=232.2

Q ss_pred             ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .++..|.++|.++.|+-||+|.++++.|++|++|+...|.+++   ++.+|...|..++.+.|+.  .|++|+.|+.|.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence            3688999999999999999999999999999999999999887   8999999999999999998  6999999999999


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC--CeeeeeCCCCceEEEEEccCCCeEEec
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      ||+.+|+.++.|.+|.+.|+.+.|+.  +...+++|+.|..+++||.++..  +++.+......|.++..+.        
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~--------  155 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE--------  155 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc--------
Confidence            99999999999999999999999764  44799999999999999998643  3444554455555555433        


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                                     ..+++|+.||+++.||++.|+....+-++    +|+|++|++|++...+++.|+++++.|-.+| 
T Consensus       156 ---------------heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG-  215 (307)
T KOG0316|consen  156 ---------------HEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG-  215 (307)
T ss_pred             ---------------cEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence                           34899999999999999999877655433    7999999999999999999999999999999 


Q ss_pred             cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258          652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  731 (1113)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~  731 (1113)
                      +++....+|...-                                                                   
T Consensus       216 klL~sYkGhkn~e-------------------------------------------------------------------  228 (307)
T KOG0316|consen  216 KLLKSYKGHKNME-------------------------------------------------------------------  228 (307)
T ss_pred             HHHHHhcccccce-------------------------------------------------------------------
Confidence            7888777765421                                                                   


Q ss_pred             cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258          732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  811 (1113)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~  811 (1113)
                                           .-...+++.....++.+++||.+++||+.....                      +.. 
T Consensus       229 ---------------------ykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~----------------------~sk-  264 (307)
T KOG0316|consen  229 ---------------------YKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ----------------------ISK-  264 (307)
T ss_pred             ---------------------eeeeeeecccceeEEeccCCceEEEEEecccee----------------------eee-
Confidence                                 112345566666788889999999988763221                      111 


Q ss_pred             cCCCCCCCC-ccEEEEecCCCEEEEEeCCeEEEEEC
Q 001258          812 VTDSNPEEA-VPCFALSKNDSYVMSASGGKISLFNM  846 (1113)
Q Consensus       812 ~~~~~~~~~-v~~l~~s~~~~~l~~~sdg~i~vwd~  846 (1113)
                      +..  +... +.++.+.|.-..++++.++.+..|.-
T Consensus       265 ~~~--~~~v~v~dl~~hp~~~~f~~A~~~~~~~~~~  298 (307)
T KOG0316|consen  265 LSV--VSTVIVTDLSCHPTMDDFITATGHGDLFWYQ  298 (307)
T ss_pred             ecc--CCceeEEeeecccCccceeEecCCceeceee
Confidence            110  3333 68899999988888888877777754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.98  E-value=6.8e-29  Score=260.71  Aligned_cols=640  Identities=15%  Similarity=0.181  Sum_probs=353.1

Q ss_pred             cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      +.+..+-.|.+.|+.+.|||-...|||+++.|..|+||.+..|-...             +......+.+..-.|.|+.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence            34445555999999999999887799999999999999998553221             11122245555678999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEeec
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEG  507 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~  507 (1113)
                      +|...-|...+..|+++|||+.+++.+.   ++.+|.+.|.+..|+.||+  ++++++.|+.|+|||.+ .++.++...+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9976666666678999999999988655   7899999999999999999  89999999999999988 4778888888


Q ss_pred             cCcCEE-EEeeeecCCceEEEEEecC----CcEEEEEcCCCCCe-eeeeCC-CCceEEEEEccCCCeE-EeccccCceeE
Q 001258          508 HEAPVY-SVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSR-VDYEAP-GRWCTTMAYSADGTRT-YQGFRKRSLGV  579 (1113)
Q Consensus       508 h~~~v~-~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~~-~~~~~~~~i~~  579 (1113)
                      |.+.-. .+.|.  ++-..|++.+.+    ..|++||.+..... .++... ...|.--.+.||.+.+ +.|.....+.+
T Consensus       212 H~~~rdsRv~w~--Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~  289 (1012)
T KOG1445|consen  212 HGGMRDSRVLWA--GNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFM  289 (1012)
T ss_pred             cccchhheeeec--cchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEE
Confidence            876422 23333  333467776664    46999998764332 222221 1123344566666543 33444445555


Q ss_pred             EEecCCCCEEEEEe---------------------cCCc-EEEEECCCCceEEEE---------ccC-------------
Q 001258          580 VQFDTTKNRFLAAG---------------------DDFS-IKFWDMDSVQLLTSI---------DAD-------------  615 (1113)
Q Consensus       580 ~~~~~~~~~l~~~~---------------------~dg~-i~iwd~~~~~~~~~~---------~~~-------------  615 (1113)
                      +.+.+...+|.-+.                     .++. .+++.+.....+...         ..|             
T Consensus       290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~  369 (1012)
T KOG1445|consen  290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG  369 (1012)
T ss_pred             EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence            55444333221100                     0111 111111111110000         000             


Q ss_pred             --------CCCCCcCeEEECCCCC-------------EEE-EEECC---------------CcEE--EEEcCC-----Cc
Q 001258          616 --------GGLPASPRIRFNKDGC-------------LLA-VSTND---------------NGIK--ILATSD-----GI  651 (1113)
Q Consensus       616 --------~~~~~v~~~~~s~~~~-------------~l~-~~~~d---------------g~i~--iwd~~~-----~~  651 (1113)
                              +....+..++..|..+             ..+ +++.+               +.+.  +=|...     ..
T Consensus       370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~  449 (1012)
T KOG1445|consen  370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK  449 (1012)
T ss_pred             cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence                    0001111222222100             000 00000               0000  000000     00


Q ss_pred             cceecc---------------------ccccccccccCCCCCCCcccchhhh-----hhhhcccccccccccccccCCCC
Q 001258          652 RLLRTF---------------------ENLAYDASRTSENSKPTISPISAAA-----AAAATSAGLADRAASMVSIPGMN  705 (1113)
Q Consensus       652 ~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  705 (1113)
                      ...+.+                     ++.+..+............+.+.-.     ....+.+... +..|...-..+.
T Consensus       450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~g  528 (1012)
T KOG1445|consen  450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNFG  528 (1012)
T ss_pred             hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCcccC
Confidence            000000                     0000000000000000000000000     0000000000 000100000010


Q ss_pred             CCccccCCCcceeeccC------CCceeeEeccCCCCC------CcceecccCcccccCceEEEEEeCCCceEEE--eec
Q 001258          706 GDVRSLADVKPRITEES------NDKSKVWKLTELSEP------NQCRSLRLPENLRATKISRLIFTNSGNAILA--LAS  771 (1113)
Q Consensus       706 ~~~~~~~~~~~l~~~~~------d~~i~iw~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~--~~~  771 (1113)
                      ..  .........+.+.      =|.+.-|.--.+...      ..++.+...     -+-.+--|+.+..++++  .+.
T Consensus       529 ~~--~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~-----~PgEsnGfcan~~rvAVPL~g~  601 (1012)
T KOG1445|consen  529 KP--ISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR-----LPGESNGFCANNKRVAVPLAGS  601 (1012)
T ss_pred             CC--ccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc-----CCCccCceeeccceEEEEecCC
Confidence            00  0000000000000      011111111111100      001111100     01112223344444544  455


Q ss_pred             CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEEEEe-CCeEEEEECCCC
Q 001258          772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTF  849 (1113)
Q Consensus       772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~  849 (1113)
                      .|.|-||++.....-+++..                     .+.-....|+.+.|+| |...||++. ||.|++|.+..+
T Consensus       602 gG~iai~el~~PGrLPDgv~---------------------p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~  660 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVM---------------------PGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN  660 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccc---------------------cccccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence            78999999987655555432                     1222566789999998 566888887 899999998754


Q ss_pred             c-------eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001258          850 K-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA  922 (1113)
Q Consensus       850 ~-------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~  922 (1113)
                      .       .-..+..|...|+++.|+|-...+|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+++.+.
T Consensus       661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcK  740 (1012)
T KOG1445|consen  661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCK  740 (1012)
T ss_pred             CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeec
Confidence            3       235577899999999999977889999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccceee--ccccCCCC
Q 001258          923 DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLECVK--QWVPRESS  995 (1113)
Q Consensus       923 D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~~~--~~~~~~h~  995 (1113)
                      ||+|++|+-.+++..      +.++..+....-..+.|.-||+++++ |.    +++|.+||..+.....  +...+. .
T Consensus       741 Dg~~rVy~Prs~e~p------v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-a  813 (1012)
T KOG1445|consen  741 DGTLRVYEPRSREQP------VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-A  813 (1012)
T ss_pred             CceEEEeCCCCCCCc------cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-c
Confidence            999999998886532      22222222234467889999999988 43    4679999987654211  111110 1


Q ss_pred             CCeeEEEECCCCC-EEEEEeCCCcEEEEecCCCce-eeecCCCcccCCCccc
Q 001258          996 APITHATFSCDSQ-LVYACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSS 1045 (1113)
Q Consensus       996 ~~v~~l~~s~dg~-~l~s~~~Dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~ 1045 (1113)
                      ..+.--.+.+|.. ++++|-.|..|.+|.+..... ++.+. +...+.+|++
T Consensus       814 ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~-~f~sp~~hqG  864 (1012)
T KOG1445|consen  814 PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLA-PFMSPVGHQG  864 (1012)
T ss_pred             CccccccccCCCceEEEecCCCceEEEEEecCCCceeeecc-cccCCCcccc
Confidence            1222233455655 467888899999999854433 33332 3334556766

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.7e-31  Score=260.90  Aligned_cols=273  Identities=21%  Similarity=0.326  Sum_probs=228.9

Q ss_pred             ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC
Q 001258          464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  543 (1113)
Q Consensus       464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  543 (1113)
                      ....|+|+.+. |+   .+++|..|.+|+|||..+-.+++.+.||++.|.|+.+.  .  ..+++|+.|.+|++||+.++
T Consensus       196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~--rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--E--RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--c--eEEEecCCCceEEEEeccCC
Confidence            34579999985 33   49999999999999999999999999999999999853  2  69999999999999999999


Q ss_pred             CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE---EEEccCCCCCC
Q 001258          544 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA  620 (1113)
Q Consensus       544 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~  620 (1113)
                      +++.++..|...|..+.|+..                       ++++++.|.++.+||+.+...+   ..+.+|  ...
T Consensus       268 e~l~tlihHceaVLhlrf~ng-----------------------~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa  322 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSNG-----------------------YMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA  322 (499)
T ss_pred             chhhHHhhhcceeEEEEEeCC-----------------------EEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence            999999999988888888642                       6999999999999999876532   233333  557


Q ss_pred             cCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccc
Q 001258          621 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS  700 (1113)
Q Consensus       621 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  700 (1113)
                      |+.+.|+  .+++++++.|.+|++|++.++ +.++.+.+                                         
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g-----------------------------------------  358 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG-----------------------------------------  358 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence            8888886  569999999999999998887 45444433                                         


Q ss_pred             cCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258          701 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  780 (1113)
Q Consensus       701 ~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~  780 (1113)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (499)
T KOG0281|consen  359 --------------------------------------------------------------------------------  358 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC
Q 001258          781 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP  859 (1113)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~  859 (1113)
                                                          |...|.|+.+  .|+++++|+ |.+|++||+..|.+++.+++|.
T Consensus       359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence                                                4444444444  778999998 9999999999999999999999


Q ss_pred             CCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      .-|.|+.|.   .+.+++|..||+|+|||+..+.         ++..+..|+++|..+.|  |...+++++.|.+|.|||
T Consensus       401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            999999995   4789999999999999998753         45566779999999999  678999999999999999


Q ss_pred             CCCCcc
Q 001258          931 SDGWEK  936 (1113)
Q Consensus       931 ~~~~~~  936 (1113)
                      +..+..
T Consensus       476 Fl~~~~  481 (499)
T KOG0281|consen  476 FLNGPP  481 (499)
T ss_pred             cCCCCc
Confidence            988543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=4.8e-31  Score=270.43  Aligned_cols=285  Identities=19%  Similarity=0.267  Sum_probs=241.3

Q ss_pred             ccccCceEEEEEeC-CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258          748 NLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  826 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~  826 (1113)
                      .+|...|+++.|.| .+.++++++.|+.|+||++                   |+  .+.+++. +.+  |..+|.+++|
T Consensus       211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~v-------------------y~--~~~~lrt-f~g--H~k~Vrd~~~  266 (503)
T KOG0282|consen  211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNV-------------------YD--DRRCLRT-FKG--HRKPVRDASF  266 (503)
T ss_pred             cCCccccchhhhccceeeEEEecCCCceEEEEEE-------------------ec--Ccceehh-hhc--chhhhhhhhc
Confidence            45999999999999 8899999999999999985                   33  3444443 333  9999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258          827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      +.+|..+++++ |+.|++||+++|+++..+. ....++|+.|.|++.+.+++|+.|+.|+.||+++++.++....|-+.|
T Consensus       267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i  345 (503)
T KOG0282|consen  267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI  345 (503)
T ss_pred             cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence            99999999999 9999999999999999987 445689999999666999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccc
Q 001258          906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  984 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~  984 (1113)
                      ..+.|-++|+++++.+.|++++||+....-..+  .+.....     ....++..+|++.++++ +.|..+.+|.+...-
T Consensus       346 ~~i~F~~~g~rFissSDdks~riWe~~~~v~ik--~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~  418 (503)
T KOG0282|consen  346 LDITFVDEGRRFISSSDDKSVRIWENRIPVPIK--NIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF  418 (503)
T ss_pred             eeeEEccCCceEeeeccCccEEEEEcCCCccch--hhcchhh-----ccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence            999999999999999999999999998743322  1111122     24578999999999999 799999999864322


Q ss_pred             e---eeccccCCC--CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          985 C---VKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       985 ~---~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      .   -..+.  +|  .+.-..+.|||||++|++|+.||.+.+||..+.+++..+.       +|...+.  .+.|+|...
T Consensus       419 r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci--~v~wHP~e~  487 (503)
T KOG0282|consen  419 RLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCI--GVDWHPVEP  487 (503)
T ss_pred             ccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccc-------cCCcceE--EEEecCCCc
Confidence            1   12232  55  5677889999999999999999999999999999999888       7766555  499999888


Q ss_pred             CEEEEEeCCCcEEEEe
Q 001258         1060 NEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~ 1075 (1113)
                      ..+|+++.||.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            8999999999999996

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=1.3e-30  Score=252.17  Aligned_cols=291  Identities=19%  Similarity=0.298  Sum_probs=237.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....+.+..|+|||+++++++-||.|.||+..++....+-+..+.         .. .+.       +...|.|+.||.|
T Consensus       212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fMM-------md~aVlci~FSRD  274 (508)
T KOG0275|consen  212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FMM-------MDDAVLCISFSRD  274 (508)
T ss_pred             cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-eee-------cccceEEEeeccc
Confidence            456788999999999999999999999999876554333222111         11 111       6789999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      ..++|+|+ ||.|+||.+.+|.|++.|. +|...|+|+.||. |+..+.+++.|.+++|.-+++|+++..++||++.|+.
T Consensus       275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~  353 (508)
T KOG0275|consen  275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE  353 (508)
T ss_pred             HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence            99999999 9999999999999999997 8999999999999 8888999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-CCcEEEEE-cCCeEEEEeCCccce
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQLAIFETTKLEC  985 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~~-~d~~v~v~d~~~~~~  985 (1113)
                      ..|++||..+++++.||+|++|+..+.++...     ..... ...+|..+..-| +-..++++ ...++.+.++. |+.
T Consensus       354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~T-----fk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQv  426 (508)
T KOG0275|consen  354 ATFTDDGHHIISASSDGTVKVWHGKTTECLST-----FKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQV  426 (508)
T ss_pred             eEEcCCCCeEEEecCCccEEEecCcchhhhhh-----ccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceE
Confidence            99999999999999999999999999776432     11111 113566666655 34455554 66788888875 777


Q ss_pred             eeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          986 VKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       986 ~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                      ++.+..+. ..+...+.+.||.|.++++.+.|+.++.|.+.+|++...+.+++..+.|         ++.+| ..++|++
T Consensus       427 VrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIG---------l~HHP-HqNllAs  496 (508)
T KOG0275|consen  427 VRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIG---------LTHHP-HQNLLAS  496 (508)
T ss_pred             EeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccc---------cccCc-ccchhhh
Confidence            77776432 2566778899999999999999999999999999999988855554433         77788 5689999


Q ss_pred             EeCCCcEEEEe
Q 001258         1065 GLSDGGVHVFE 1075 (1113)
Q Consensus      1065 ~~~Dg~v~vW~ 1075 (1113)
                      -+.||.+++|.
T Consensus       497 YsEDgllKLWk  507 (508)
T KOG0275|consen  497 YSEDGLLKLWK  507 (508)
T ss_pred             hcccchhhhcC
Confidence            99999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.8e-28  Score=268.21  Aligned_cols=245  Identities=27%  Similarity=0.432  Sum_probs=210.3

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      +|.++|++++|+|++++ +++|+.||.|.+|++.+++...                   .+.+|...+..+.|+|++++|
T Consensus         7 ~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l   66 (289)
T cd00200           7 GHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL   66 (289)
T ss_pred             ccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence            59999999999999995 8899999999999999876543                   356788899999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      ++++.||.|++||+.+++.+.   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++.+..+..|...|.++
T Consensus        67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~  141 (289)
T cd00200          67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV  141 (289)
T ss_pred             EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence            999999999999999876554   5778999999999999977  78888889999999999999999999999999999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +|++.  +.++++++.||.|++||+++.+....+..+...+.++.++++++                     .+++++.+
T Consensus       142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~~~~  198 (289)
T cd00200         142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE---------------------KLLSSSSD  198 (289)
T ss_pred             EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC---------------------EEEEecCC
Confidence            98765  46888888899999999987776666666665666666666554                     68888889


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.|++||+..++.+..+..+  ...+.++.|+|++.++++++.+|.|++|++.++
T Consensus       199 ~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         199 GTIKLWDLSTGKCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CcEEEEECCCCceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            99999999998888877554  347899999999999998888999999998765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2.6e-28  Score=266.92  Aligned_cols=285  Identities=27%  Similarity=0.430  Sum_probs=239.7

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.++|++++|+|++++|++++.||.|++|++.+++...   .+..|...+..+.|+++++  ++++++.|+.|++|
T Consensus         4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~   78 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW   78 (289)
T ss_pred             HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence            467899999999999999999999999999999999877444   5778999999999999997  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |+.+++.+..+..|...+.++.|++.  +.++++++.||.|++||+.+.+....+..+...+.++.++|++.        
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------  148 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGT--------  148 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCC--------
Confidence            99998889999999999999998765  46888888899999999987666666665666666666666544        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                   ++++++.++.|++||+.+++.+..+..+  ...+.++.|+|+++.+++++.++.+++||+.++ ...
T Consensus       149 -------------~l~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~  212 (289)
T cd00200         149 -------------FVASSSQDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-KCL  212 (289)
T ss_pred             -------------EEEEEcCCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCC-cee
Confidence                         5666777999999999988888888755  347899999999999999999999999997654 111


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+.                                                                            
T Consensus       213 ~~~~----------------------------------------------------------------------------  216 (289)
T cd00200         213 GTLR----------------------------------------------------------------------------  216 (289)
T ss_pred             cchh----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (289)
T cd00200         217 --------------------------------------------------------------------------------  216 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                       .|...+.++++++++.++++++ +|.|++|++.+++....+..|...+.+++|++ ++.+|++++.||.|++|+
T Consensus       217 -~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         217 -GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD  289 (289)
T ss_pred             -hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence             0445677788888888888888 89999999998888888888989999999999 889999999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2.5e-28  Score=301.04  Aligned_cols=311  Identities=14%  Similarity=0.221  Sum_probs=223.2

Q ss_pred             CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC----cee
Q 001258          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV  455 (1113)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~----~~~  455 (1113)
                      +|.+++|+..+.+.....              ....+..|.+.|.+++|+|+|++||+|+.|+.|+||++.+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            677888888765443210              01124569999999999999999999999999999997642    111


Q ss_pred             e-eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCc
Q 001258          456 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK  534 (1113)
Q Consensus       456 ~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~  534 (1113)
                      . ....+. +...|.+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||.
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 112233 3468999999986433 7999999999999999999999999999999999998753 3467888888888


Q ss_pred             EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258          535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                      |++||+.+.                                                               ..+..+..
T Consensus       600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~  616 (793)
T PLN00181        600 VKLWSINQG---------------------------------------------------------------VSIGTIKT  616 (793)
T ss_pred             EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence            888877542                                                               12222221


Q ss_pred             CCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258          615 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  693 (1113)
Q Consensus       615 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1113)
                      +   ..+.++.|+ +++.+|++|+.||.|++||+.+.......+                                    
T Consensus       617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------  657 (793)
T PLN00181        617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------  657 (793)
T ss_pred             C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence            1   236678884 579999999999999999986542111111                                    


Q ss_pred             ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258          694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  773 (1113)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  773 (1113)
                                                                            .+|...|.++.|. ++..+++++.  
T Consensus       658 ------------------------------------------------------~~h~~~V~~v~f~-~~~~lvs~s~--  680 (793)
T PLN00181        658 ------------------------------------------------------IGHSKTVSYVRFV-DSSTLVSSST--  680 (793)
T ss_pred             ------------------------------------------------------cCCCCCEEEEEEe-CCCEEEEEEC--
Confidence                                                                  0133344444443 3334444444  


Q ss_pred             eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCC-----
Q 001258          774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT-----  848 (1113)
Q Consensus       774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-----  848 (1113)
                                                                                      |++|++||+..     
T Consensus       681 ----------------------------------------------------------------D~~ikiWd~~~~~~~~  696 (793)
T PLN00181        681 ----------------------------------------------------------------DNTLKLWDLSMSISGI  696 (793)
T ss_pred             ----------------------------------------------------------------CCEEEEEeCCCCcccc
Confidence                                                                            45555555432     


Q ss_pred             -CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-------------ecccccCeEEEEEcCCC
Q 001258          849 -FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       849 -~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d~  914 (1113)
                       ...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+..             ...|...|.+++|++++
T Consensus       697 ~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~  775 (793)
T PLN00181        697 NETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQS  775 (793)
T ss_pred             CCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCC
Confidence             245667888999999999999 789999999999999999765433211             23456679999999999


Q ss_pred             CEEEEEeCCCcEEEEeC
Q 001258          915 NVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       915 ~~L~s~s~D~~v~iwd~  931 (1113)
                      ..|++|+.||+|+||++
T Consensus       776 ~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        776 STLVAANSTGNIKILEM  792 (793)
T ss_pred             CeEEEecCCCcEEEEec
Confidence            99999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=7.3e-30  Score=238.72  Aligned_cols=287  Identities=17%  Similarity=0.299  Sum_probs=235.6

Q ss_pred             cccCCCcceEEEEEcC---CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258          415 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  491 (1113)
                      +..||+.+|..++|||   +|-+|++++.|+.--+-+-++|..+.   +|.||.+.|+......+..  ..++++.|-+.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence            4679999999999997   89999999999998888888888777   8999999999999998887  68999999999


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe-eeeeCCCCceEEEEEccCCCeEEe
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      +|||.-+|..+++|. |..-|.+++|+.  |.++|++|+.++.+++||+...+.. ..+.+|.+.|..+.|....+    
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~~--ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~----  156 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFSQ--DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDK----  156 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEecc--cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCc----
Confidence            999999999999998 889999999764  5579999999999999999876543 46777777777776655444    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                       .+++.+.|++||+||.+++..++.+....   .|+++.++++|++|.++.. +.|.+||..+-
T Consensus       157 -----------------~iLSSadd~tVRLWD~rTgt~v~sL~~~s---~VtSlEvs~dG~ilTia~g-ssV~Fwdaksf  215 (334)
T KOG0278|consen  157 -----------------CILSSADDKTVRLWDHRTGTEVQSLEFNS---PVTSLEVSQDGRILTIAYG-SSVKFWDAKSF  215 (334)
T ss_pred             -----------------eEEeeccCCceEEEEeccCcEEEEEecCC---CCcceeeccCCCEEEEecC-ceeEEeccccc
Confidence                             58888999999999999999999998654   4899999999998877654 68999987554


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       ..++.+                                                                        +
T Consensus       216 -~~lKs~------------------------------------------------------------------------k  222 (334)
T KOG0278|consen  216 -GLLKSY------------------------------------------------------------------------K  222 (334)
T ss_pred             -cceeec------------------------------------------------------------------------c
Confidence             121111                                                                        0


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (334)
T KOG0278|consen  223 --------------------------------------------------------------------------------  222 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                            ....|.+..++|+...+++|+ |..++.||..++..+..+ .+|.++|.|+.|+| ||...|+|++||+|+||.
T Consensus       223 ------~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  223 ------MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             ------CccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEEE
Confidence                  122344455556665666665 677777888888777775 88999999999999 999999999999999999


Q ss_pred             ccccee
Q 001258          889 VRVDEV  894 (1113)
Q Consensus       889 ~~~~~~  894 (1113)
                      ...++.
T Consensus       296 t~~~~~  301 (334)
T KOG0278|consen  296 TTPGKT  301 (334)
T ss_pred             ecCCCc
Confidence            876653

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=3.6e-28  Score=299.72  Aligned_cols=252  Identities=14%  Similarity=0.181  Sum_probs=201.0

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCC
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  433 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  433 (1113)
                      ..|.+.|++++|+|+|++ +|+|+.|+.|+|||..+......           ........+. +...|.+++|+| ++.
T Consensus       480 ~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~~-~~~~v~~l~~~~~~~~  546 (793)
T PLN00181        480 LNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVELA-SRSKLSGICWNSYIKS  546 (793)
T ss_pred             cCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEec-ccCceeeEEeccCCCC
Confidence            458999999999999995 99999999999999864211000           0000000122 345899999987 588


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      +||+++.||+|+|||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++.++..+..+ ..|
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v  620 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI  620 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence            99999999999999999887665   6789999999999997 666  7999999999999999999999888755 678


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      .++.|++ +++.++++|+.||.|++||+++.. ....+..|...|..+.|. ++                     .++++
T Consensus       621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~---------------------~~lvs  677 (793)
T PLN00181        621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DS---------------------STLVS  677 (793)
T ss_pred             EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CC---------------------CEEEE
Confidence            8888853 456899999999999999998755 344556666666666664 22                     36999


Q ss_pred             EecCCcEEEEECCCC------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          592 AGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++.|+.|++||+..+      ..+..+..|  ...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus       678 ~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        678 SSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999999999743      466677655  446889999999999999999999999997654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.5e-30  Score=237.96  Aligned_cols=299  Identities=16%  Similarity=0.264  Sum_probs=254.8

Q ss_pred             ccccCceEEEEEe---CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258          748 NLRATKISRLIFT---NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  824 (1113)
Q Consensus       748 ~~~~~~i~~~~~s---~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l  824 (1113)
                      .+|..+|-.++|+   |+|-+|++++.|+.-.+                      .+-.+|..+.. +.  +|.+.|.+.
T Consensus        11 ~ghtrpvvdl~~s~itp~g~flisa~kd~~pml----------------------r~g~tgdwigt-fe--ghkgavw~~   65 (334)
T KOG0278|consen   11 HGHTRPVVDLAFSPITPDGYFLISASKDGKPML----------------------RNGDTGDWIGT-FE--GHKGAVWSA   65 (334)
T ss_pred             cCCCcceeEEeccCCCCCceEEEEeccCCCchh----------------------ccCCCCCcEEe-ee--ccCcceeee
Confidence            5699999999997   58999999999976443                      24445555443 33  399999999


Q ss_pred             EEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeecccc
Q 001258          825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS  902 (1113)
Q Consensus       825 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~  902 (1113)
                      +++.|...-++++ |=+-+|||.-++..+..|. |..-|.+++|+. |.++|++|+.+..++|||++.- .....+.+|.
T Consensus        66 ~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ght  143 (334)
T KOG0278|consen   66 TLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHT  143 (334)
T ss_pred             ecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCC
Confidence            9999988888888 8899999999999999997 888899999999 8999999999999999999863 4567889999


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCc
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  982 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~  982 (1113)
                      +.|..+-|....+.++|.+.|++||+||..++.........         ..|.++-+++||++|.++..+.|.+||..+
T Consensus       144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~---------s~VtSlEvs~dG~ilTia~gssV~Fwdaks  214 (334)
T KOG0278|consen  144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN---------SPVTSLEVSQDGRILTIAYGSSVKFWDAKS  214 (334)
T ss_pred             CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC---------CCCcceeeccCCCEEEEecCceeEEecccc
Confidence            99999999988889999999999999999997754332221         368999999999999999999999999999


Q ss_pred             cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258          983 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus       983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
                      ...++.+..   ...|.+..++|+...+++|+.|..++.||+.+++.+..+      ..||-+.|.  ++.|+| ||...
T Consensus       215 f~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~------nkgh~gpVh--cVrFSP-dGE~y  282 (334)
T KOG0278|consen  215 FGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY------NKGHFGPVH--CVRFSP-DGELY  282 (334)
T ss_pred             ccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeec------ccCCCCceE--EEEECC-CCcee
Confidence            999888765   568999999999999999999999999999999998764      128889988  599999 89999


Q ss_pred             EEEeCCCcEEEEeccCCC--ccccCCCCCCCCCC
Q 001258         1063 ALGLSDGGVHVFEPLESE--GKWGVPPPVDNGST 1094 (1113)
Q Consensus      1063 ~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~~ 1094 (1113)
                      ++|+.||+|++|....++  +.|.-..|-+.+.-
T Consensus       283 AsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee  316 (334)
T KOG0278|consen  283 ASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE  316 (334)
T ss_pred             eccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence            999999999999988877  56666666655543

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=2.3e-28  Score=231.36  Aligned_cols=297  Identities=15%  Similarity=0.252  Sum_probs=233.5

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .++||+.+++.+.++.+|.+|.+|+.|.++.||--.+|+.+.   ++.||.+.|+|++.+.+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            588999999999999999999999999999999998999777   8999999999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-----CCcEEEEEcCCCC-------CeeeeeCCCCceEEEEEc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLG-------SRVDYEAPGRWCTTMAYS  562 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~s  562 (1113)
                      |+++|+++..++ ...+|..+.|++..  ++++....     .+.|.++|++...       +...+..+..        
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s--------  148 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS--------  148 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc--------
Confidence            999999999998 56789999987654  45554433     4679999988433       2223332322        


Q ss_pred             cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                                   .+...-|.|.+.++++|.++|.|.+||+++|+. +.....|.  ..|+.+.+++|..++++++.|.+
T Consensus       149 -------------kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~FiT~s~Dtt  213 (327)
T KOG0643|consen  149 -------------KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYFITGSKDTT  213 (327)
T ss_pred             -------------ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceEEecccCcc
Confidence                         455566677777899999999999999999854 44445554  47999999999999999999999


Q ss_pred             EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258          642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  721 (1113)
Q Consensus       642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  721 (1113)
                      -++||..+- +.++.+.                                                               
T Consensus       214 akl~D~~tl-~v~Kty~---------------------------------------------------------------  229 (327)
T KOG0643|consen  214 AKLVDVRTL-EVLKTYT---------------------------------------------------------------  229 (327)
T ss_pred             ceeeeccce-eeEEEee---------------------------------------------------------------
Confidence            999998776 3433331                                                               


Q ss_pred             CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                                                  ...+|.+.+++|-...++.++.....-                         
T Consensus       230 ----------------------------te~PvN~aaisP~~d~VilgGGqeA~d-------------------------  256 (327)
T KOG0643|consen  230 ----------------------------TERPVNTAAISPLLDHVILGGGQEAMD-------------------------  256 (327)
T ss_pred             ----------------------------ecccccceecccccceEEecCCceeee-------------------------
Confidence                                        335677888888777666655431110                         


Q ss_pred             CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258          802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  877 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~  877 (1113)
                                         |+            +.+  .|  .-++|++-..+.+..+++|-++|++++|+| +|+..++
T Consensus       257 -------------------VT------------TT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsS  304 (327)
T KOG0643|consen  257 -------------------VT------------TTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSS  304 (327)
T ss_pred             -------------------ee------------eecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCccccc
Confidence                               00            000  12  245666666677888999999999999999 9999999


Q ss_pred             EecCCcEEEEEccc
Q 001258          878 GMDDSSIQIYNVRV  891 (1113)
Q Consensus       878 g~~dg~v~iwd~~~  891 (1113)
                      |++||.|++.....
T Consensus       305 GGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  305 GGEDGYVRLHHFDS  318 (327)
T ss_pred             CCCCceEEEEEecc
Confidence            99999999986654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.5e-27  Score=218.07  Aligned_cols=275  Identities=17%  Similarity=0.248  Sum_probs=210.7

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ...++.....|.+++|+|.|. |.|+|+...+.+|..+..-..+..    ..+.....+......-+.|.+.|+|.+|||
T Consensus        25 ~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             EEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecC
Confidence            345566788999999999999 699999999999987654222210    000000111122234567999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCC---CCeeEEEEec-CCCcEEEEeCCCCceeeE
Q 001258          431 DGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~---~~~~~l~s~s-~d~~i~iwd~~~~~~~~~  504 (1113)
                      +|++||+|++|++|++.-..  +........++.-|.+.|..++|..+   +.. +|++++ .|..|.+=|..+|+..+.
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence            99999999999999996554  33334444568899999999999754   222 566655 588899999999999999


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      +.||.+.|.++-   +-++.++++|+.|.+|++||++-..++.++...              +--.|.....+..++++|
T Consensus       179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEECC
Confidence            999999998873   345579999999999999999876555443221              111122334667778888


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .|+.|++|-.|....+||++.++.++.+..|  ...|.|+.|+|...++.+++.|..|++-|+...
T Consensus       242 sgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            8889999999999999999999999999766  568999999999999999999999999987644

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=5e-28  Score=229.12  Aligned_cols=287  Identities=18%  Similarity=0.314  Sum_probs=229.7

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  539 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  539 (1113)
                      .+.||..+++.|.++.+|.  +|.+++.|.++.||-..+|+.+.++.||.+.|+++....  +...+++|+.|.++++||
T Consensus         5 ~l~GHERplTqiKyN~eGD--LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~--~s~~liTGSAD~t~kLWD   80 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD--LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDW--DSKHLITGSADQTAKLWD   80 (327)
T ss_pred             ccccCccccceEEecCCCc--EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecC--CcceeeeccccceeEEEE
Confidence            3779999999999999999  899999999999999889999999999999999999654  447999999999999999


Q ss_pred             cCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-----ecCCcEEEEECC-------CCc
Q 001258          540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-----GDDFSIKFWDMD-------SVQ  607 (1113)
Q Consensus       540 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~-------~~~  607 (1113)
                      +++++.+..+.. ...|..+.|+.+|.                     +++..     +..+.|.++|++       +.+
T Consensus        81 v~tGk~la~~k~-~~~Vk~~~F~~~gn---------------------~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   81 VETGKQLATWKT-NSPVKRVDFSFGGN---------------------LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             cCCCcEEEEeec-CCeeEEEeeccCCc---------------------EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            999888776654 34566667766665                     33333     245678999987       445


Q ss_pred             eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhc
Q 001258          608 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT  687 (1113)
Q Consensus       608 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1113)
                      +...+..+.  ..++.+-|+|-+++|++|..||.|.+||+.++.+.+...+                             
T Consensus       139 p~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~-----------------------------  187 (327)
T KOG0643|consen  139 PYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDE-----------------------------  187 (327)
T ss_pred             ceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechh-----------------------------
Confidence            566666554  4688999999999999999999999999988743221110                             


Q ss_pred             ccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEE
Q 001258          688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  767 (1113)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  767 (1113)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (327)
T KOG0643|consen  188 --------------------------------------------------------------------------------  187 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEEC
Q 001258          768 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  846 (1113)
Q Consensus       768 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~  846 (1113)
                                                                      .|...|..+.+++|..++++++ |.+-++||.
T Consensus       188 ------------------------------------------------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~  219 (327)
T KOG0643|consen  188 ------------------------------------------------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDV  219 (327)
T ss_pred             ------------------------------------------------hhccccccccccCCcceEEecccCccceeeec
Confidence                                                            1666788888899999999998 889999999


Q ss_pred             CCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCC-------------cEEEEEcccceeeeeecccccCeEEEEEcC
Q 001258          847 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS-------------SIQIYNVRVDEVKSKLKGHSKRITGLAFSH  912 (1113)
Q Consensus       847 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg-------------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  912 (1113)
                      .+.++++++. ...++++.+++| -...++.| +.+-             .-+.|++-..+.+..+++|-++|++++|+|
T Consensus       220 ~tl~v~Kty~-te~PvN~aaisP-~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP  297 (327)
T KOG0643|consen  220 RTLEVLKTYT-TERPVNTAAISP-LLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP  297 (327)
T ss_pred             cceeeEEEee-ecccccceeccc-ccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence            9999999987 456799999999 44444444 3331             123344434456678899999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCC
Q 001258          913 ALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       913 d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      +|+..+||+.||.|++.-++.
T Consensus       298 dGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  298 DGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             CCcccccCCCCceEEEEEecc
Confidence            999999999999999987765

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=227.82  Aligned_cols=271  Identities=15%  Similarity=0.199  Sum_probs=197.5

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE-eeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV-LRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      ..-.|++++.+.+|||||. |+|+|+.|..|+|.|++..-... ...+..-+.+. ..|.. .++-.|.++|+++.|+|.
T Consensus       107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa-~hPvI-RTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQA-RHPVI-RTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCccc-CCceE-eehhhccCcccceeecch
Confidence            3344999999999999999 79999999999999997211000 00000000000 11111 257789999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---ecc
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH  508 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h  508 (1113)
                      ...|++|+.|++|+++|.......+.++.+. ...+|.++.|.|.|.  +++.|..--++++||+.+-+|...-   .+|
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence            9999999999999999998655444333333 456899999999999  7899999999999999998876543   469


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  588 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  588 (1113)
                      .+.|+++.++  +.+.+.++++.||.|++||--+..++.++..                   .|.+..+....|..++++
T Consensus       261 t~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~-------------------AH~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  261 TGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGN-------------------AHGGSEVCSAVFTKNGKY  319 (430)
T ss_pred             ccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHh-------------------hcCCceeeeEEEccCCeE
Confidence            9999999854  5668999999999999999877666654422                   112224444445555558


Q ss_pred             EEEEecCCcEEEEECCCCceEEEEccCCCCC---CcCeEEECCCCCEEEEEEC-CCcEEEEEcCCC
Q 001258          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTN-DNGIKILATSDG  650 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~  650 (1113)
                      +++.+.|..+++|.+.+++++..+.+.+..+   .-+...|+....+++.-.. .+.+.-||..+.
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRta  385 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTA  385 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccch
Confidence            9999999999999999999999987654322   1234556666666655433 356777877665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.3e-28  Score=247.20  Aligned_cols=263  Identities=18%  Similarity=0.279  Sum_probs=219.5

Q ss_pred             CCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc
Q 001258          343 TPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  421 (1113)
Q Consensus       343 ~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (1113)
                      ..+.+|......+. |.++|..+.|-++... |++|+.|..|.+|++..++.-.                 ...+.|..+
T Consensus       159 v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g  220 (459)
T KOG0288|consen  159 VEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLG  220 (459)
T ss_pred             hhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCC
Confidence            45556777777777 9999999999999774 9999999999999998765211                 115788889


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      .|+.++|.++++++++++.|+.+++|++...+...   +|.||++.|+++.|.....  .+++|+.|.+|++||+..+.|
T Consensus       221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C  295 (459)
T KOG0288|consen  221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYC  295 (459)
T ss_pred             CcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhe
Confidence            99999999999999999999999999999987665   8999999999999998877  499999999999999999999


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .+++. ....+..|+..    ...+++|-.|+.|++||+++..+....+.++ .|+++..+++|.               
T Consensus       296 ~kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~---------------  354 (459)
T KOG0288|consen  296 SKTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL---------------  354 (459)
T ss_pred             ecccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe---------------
Confidence            88765 23445555533    2578999999999999999988888777665 677777777776               


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceec
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  656 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  656 (1113)
                            .+++++.|.++.+.|+++.+....+...+.  ....+.+.|||++.|+++|+.||.|+||++.++ ++...
T Consensus       355 ------~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~  424 (459)
T KOG0288|consen  355 ------ELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKV  424 (459)
T ss_pred             ------EEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence                  588889999999999999998888865432  235788999999999999999999999999988 44433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.9e-27  Score=236.52  Aligned_cols=291  Identities=15%  Similarity=0.264  Sum_probs=230.9

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      +.+-...+-|.+.|.++...  ++ .+++|++||+++|||.. |+...                   .+.||.++|.+++
T Consensus        95 aP~pl~~~~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~  151 (423)
T KOG0313|consen   95 APKPLQCFLHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVA  151 (423)
T ss_pred             CCCccccccchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeE
Confidence            45555677899999999998  56 49999999999999986 55544                   4789999999888


Q ss_pred             EcCCC---CeEEEEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----
Q 001258          428 WSPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----  498 (1113)
Q Consensus       428 ~spdg---~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-----  498 (1113)
                      |--..   ..|++++.|.++++|.++.++.. .......||...|-+|...++|.  .+++||.|.+|+||+..+     
T Consensus       152 ~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~  229 (423)
T KOG0313|consen  152 WVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDE  229 (423)
T ss_pred             EEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcccc
Confidence            85433   35999999999999999877543 12223459999999999999999  799999999999999321     


Q ss_pred             --------------------CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEE
Q 001258          499 --------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  558 (1113)
Q Consensus       499 --------------------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~  558 (1113)
                                          +.++-++.||..+|.++.|.. .  ..+++++.|.+|+.||+.+++....+...      
T Consensus       230 ~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~--~v~yS~SwDHTIk~WDletg~~~~~~~~~------  300 (423)
T KOG0313|consen  230 LESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A--TVIYSVSWDHTIKVWDLETGGLKSTLTTN------  300 (423)
T ss_pred             ccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-C--CceEeecccceEEEEEeecccceeeeecC------
Confidence                                235567889999999999875 2  58999999999999999987766554322      


Q ss_pred             EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---eEEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258          559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLA  634 (1113)
Q Consensus       559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~  634 (1113)
                                      ..+.++.++|..++|++|+.|..+++||.+++.   ..+.+.+|  ...|.++.|+| +...|+
T Consensus       301 ----------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~  362 (423)
T KOG0313|consen  301 ----------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLV  362 (423)
T ss_pred             ----------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEE
Confidence                            244556666666689999999999999998764   33445444  56899999999 556789


Q ss_pred             EEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCC
Q 001258          635 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  714 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (1113)
                      +++.|+++++||+++....+..+.+|.+.+...                                          ...++
T Consensus       363 S~S~D~t~klWDvRS~k~plydI~~h~DKvl~v------------------------------------------dW~~~  400 (423)
T KOG0313|consen  363 SGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSV------------------------------------------DWNEG  400 (423)
T ss_pred             EEecCCeEEEEEeccCCCcceeeccCCceEEEE------------------------------------------eccCC
Confidence            999999999999999876888888886654321                                          23456


Q ss_pred             cceeeccCCCceeeEecc
Q 001258          715 KPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       715 ~~l~~~~~d~~i~iw~~~  732 (1113)
                      ..+++|+.|.+++++...
T Consensus       401 ~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  401 GLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ceEEeccCcceEEEeccc
Confidence            789999999999998754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=4.1e-26  Score=239.94  Aligned_cols=510  Identities=17%  Similarity=0.202  Sum_probs=332.8

Q ss_pred             eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      .+..+.+|...|+.+.|++-.| .+|++|+.|..|++|.+..+.. ..+..              ..+..|+.+-.+.++
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D-~LLAT~S~D~~VKiW~lp~g~~-q~LSa--------------pe~~~g~~~~~vE~l  134 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFAD-ELLATCSRDEPVKIWKLPRGHS-QKLSA--------------PEIDVGGGNVIVECL  134 (1012)
T ss_pred             ccceeecccceeeccCccccch-hhhhcccCCCeeEEEecCCCcc-cccCC--------------cceeecCCceEEEEe
Confidence            4556788999999999998776 5899999999999998873221 11111              123334444467778


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                      .|+|...-++..+..|.+++||+.+++.+..+..|  ...|.+..|+.||.+|++++.|..|+|||.....+.++..++|
T Consensus       135 ~fHpTaDgil~s~a~g~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H  212 (1012)
T KOG1445|consen  135 RFHPTADGILASGAHGSVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH  212 (1012)
T ss_pred             ecccCcCceEEeccCceEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence            88887777888888999999999999999888876  4579999999999999999999999999998877778877777


Q ss_pred             cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC----CceeeEeccCCCC
Q 001258          661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN----DKSKVWKLTELSE  736 (1113)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d----~~i~iw~~~~~~~  736 (1113)
                      .......                                        .........+++.+.+    ..+++||......
T Consensus       213 ~~~rdsR----------------------------------------v~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~  252 (1012)
T KOG1445|consen  213 GGMRDSR----------------------------------------VLWAGNWERLISTGFTTKRIREVRAYDTRKFGA  252 (1012)
T ss_pred             ccchhhe----------------------------------------eeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence            6542110                                        0001112244444443    4678888876554


Q ss_pred             CCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEcccc--------------------------------
Q 001258          737 PNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRT--------------------------------  783 (1113)
Q Consensus       737 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~--------------------------------  783 (1113)
                      +.....+.     ....|.---|.||.++++.++. +..+..+++...                                
T Consensus       253 p~~tleld-----~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~  327 (1012)
T KOG1445|consen  253 PVHTLELD-----SSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDG  327 (1012)
T ss_pred             cceeEEee-----cccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhcchhhhccceecchhhhhhcch
Confidence            44433332     2334445567788776655544 466666665432                                


Q ss_pred             --------------------------------------------------------------------------------
Q 001258          784 --------------------------------------------------------------------------------  783 (1113)
Q Consensus       784 --------------------------------------------------------------------------------  783 (1113)
                                                                                                      
T Consensus       328 EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~  407 (1012)
T KOG1445|consen  328 EVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPK  407 (1012)
T ss_pred             hhhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcc
Confidence                                                                                            


Q ss_pred             -----cc------------------C----CC-------------------------C------ceeeee----------
Q 001258          784 -----ER------------------N----SS-------------------------G------KATASV----------  795 (1113)
Q Consensus       784 -----~~------------------~----~~-------------------------~------~~~~~~----------  795 (1113)
                           .+                  .    ++                         +      ....+.          
T Consensus       408 ~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~  487 (1012)
T KOG1445|consen  408 VAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTIS  487 (1012)
T ss_pred             cccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccC
Confidence                 00                  0    00                         0      000000          


Q ss_pred             ----------cCeec---------CCCCccccc----c--------------------------------ccCC-CCCCC
Q 001258          796 ----------APQLW---------QPPSGIMMT----N--------------------------------DVTD-SNPEE  819 (1113)
Q Consensus       796 ----------~~~lw---------~~~~g~~~~----~--------------------------------~~~~-~~~~~  819 (1113)
                                ...+-         .+..|+-+.    .                                ...+ .+|..
T Consensus       488 ~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks  567 (1012)
T KOG1445|consen  488 PEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKS  567 (1012)
T ss_pred             CCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCccccch
Confidence                      00000         000000000    0                                0000 00110


Q ss_pred             -------------CccEEEEecCCCEEEE---EeCCeEEEEECCCCc-eeee-ec--CCCCCeeEEEEecCCCcEEEEEe
Q 001258          820 -------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFK-TMAT-FM--PPPPAATFLAFHPQDNNIIAIGM  879 (1113)
Q Consensus       820 -------------~v~~l~~s~~~~~l~~---~sdg~i~vwd~~~~~-~~~~-~~--~~~~~i~~l~~s~~d~~~la~g~  879 (1113)
                                   +-.+=-|..+.+++|+   |+.|.|.||++.... ..-. +.  .....|+.+.|.|-|...||+++
T Consensus       568 ~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~  647 (1012)
T KOG1445|consen  568 AHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT  647 (1012)
T ss_pred             hhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc
Confidence                         0111124445566664   347899999997432 2111 11  13456999999999999999999


Q ss_pred             cCCcEEEEEcccc-------eeeeeecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001258          880 DDSSIQIYNVRVD-------EVKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  951 (1113)
Q Consensus       880 ~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  951 (1113)
                      +||.|++|.+..+       ..-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+.     ...+.+|.. 
T Consensus       648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHtd-  721 (1012)
T KOG1445|consen  648 DDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHTD-  721 (1012)
T ss_pred             cCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCcC-
Confidence            9999999999753       344678899999999999984 46899999999999999998543     445567764 


Q ss_pred             CCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC----cEEEEecCC
Q 001258          952 AQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSAAN 1026 (1113)
Q Consensus       952 ~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----~v~vwd~~~ 1026 (1113)
                        .|..++|||||+.+|+ +.|+++++|+.+.++..-.-..+.-...-..+.|.-||+++++.+.|.    .|.+||..+
T Consensus       722 --qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  722 --QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             --ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence              8999999999999999 899999999998876533222112244556788888999998888774    488898876


Q ss_pred             Cce--eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccCCCCC
Q 001258         1027 LKL--RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPV 1089 (1113)
Q Consensus      1027 ~~~--~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~ 1089 (1113)
                      ...  +...        +......++.-.|.++.+-++++|-.|..|+++++.-.+..+-..++|
T Consensus       800 l~~~pl~t~--------~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f  856 (1012)
T KOG1445|consen  800 LDLRPLYTQ--------VLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPF  856 (1012)
T ss_pred             ccCCcceee--------eecccCccccccccCCCceEEEecCCCceEEEEEecCCCceeeecccc
Confidence            442  2111        111111222234555445568899999999999988766554444444

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.2e-27  Score=221.64  Aligned_cols=276  Identities=16%  Similarity=0.241  Sum_probs=230.2

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1113)
                      .+++|...|.+|+|+.+|.  .+++|+.|+++.+|+++.++....  ..+|.+.|..++|++... ..+++++.|.+|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            4678999999999999999  799999999999999998866553  468999999999988655 68999999999999


Q ss_pred             EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1113)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1113)
                      ||++..++..........+                      .+.|+|+|+++++++.|..|.+.|.++.+.+...+..  
T Consensus        92 wd~r~~k~~~~i~~~~eni----------------------~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~--  147 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENI----------------------NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK--  147 (313)
T ss_pred             EEeccCcEEEEeeccCcce----------------------EEEEcCCCCEEEEecCcccEEEEEecccceeehhccc--
Confidence            9999887776655443322                      3556666678999999999999999988877766543  


Q ss_pred             CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccccc
Q 001258          618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  697 (1113)
Q Consensus       618 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1113)
                       ..+.-++|+.++.+++.....|.|.|.....- +.+..+                                        
T Consensus       148 -~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si----------------------------------------  185 (313)
T KOG1407|consen  148 -FEVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI----------------------------------------  185 (313)
T ss_pred             -ceeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence             35778899988888877777788887754322 111000                                        


Q ss_pred             ccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEE
Q 001258          698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  777 (1113)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  777 (1113)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (313)
T KOG1407|consen  186 --------------------------------------------------------------------------------  185 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec
Q 001258          778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  856 (1113)
Q Consensus       778 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  856 (1113)
                                                         .  .|.....|+.|+|+|+++|+|+ |..+.+||++..-|.+.+.
T Consensus       186 -----------------------------------~--AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  186 -----------------------------------K--AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             -----------------------------------c--cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence                                               0  1667778899999999999998 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258          857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  923 (1113)
Q Consensus       857 ~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D  923 (1113)
                      .+.-+|..+.||. ||++||+|++|..|-|-++++|..+..+. +.++-..++|+|...+||.++.|
T Consensus       229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999 99999999999999999999999888886 78889999999999999988876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.1e-27  Score=240.24  Aligned_cols=271  Identities=18%  Similarity=0.255  Sum_probs=217.3

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeec-cCCCCcccccccccCCCcceEEEEEc
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      ....-.|.-+|+||+++||+++ .++++.+|+|.=|++.+|+.... ..+.-+ +.....+.+..- .+|...|.+++.|
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~-i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS  211 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRY-IIERDEVLKSHGNPLKESR-KGHVKEILTLAVS  211 (479)
T ss_pred             ceeeccccCcceEEEeeccccc-eeecCCCcceeeeehhcCccccc-ccccchhhhhccCCCCccc-ccccceeEEEEEc
Confidence            3444459999999999999997 89999999999999999986521 000000 111122222222 4899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      +||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++-||.
T Consensus       212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHq  286 (479)
T KOG0299|consen  212 SDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQ  286 (479)
T ss_pred             CCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCc
Confidence            999999999999999999999988776   6899999999999987766  58999999999999999999999999999


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      +.|.++......  ..+-.|+.|+++++|++. .+....+.++...+.+++|-.+..                      +
T Consensus       287 d~v~~IdaL~re--R~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~H----------------------f  341 (479)
T KOG0299|consen  287 DGVLGIDALSRE--RCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEH----------------------F  341 (479)
T ss_pred             cceeeechhccc--ceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccc----------------------e
Confidence            999998754332  455555699999999994 355566777777788888776665                      9


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCC----------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                      ++|+.+|.|.+|++...+++.+.....+          ...|++++..|...++++|+.+|.|++|.+.++.+.+
T Consensus       342 vsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i  416 (479)
T KOG0299|consen  342 VSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI  416 (479)
T ss_pred             eeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence            9999999999999999888876642211          1268899999999999999999999999998884433

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=6e-27  Score=232.95  Aligned_cols=302  Identities=17%  Similarity=0.268  Sum_probs=222.7

Q ss_pred             cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEe
Q 001258          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd  495 (1113)
                      ..|.+.|.++...  +++|++|+.||.++|||..... ..   .+.||.++|.+++|.-.+. .-.|+++|.|.++++|-
T Consensus       102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~-~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~  175 (423)
T KOG0313|consen  102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKS-IK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWK  175 (423)
T ss_pred             ccchhhhhhhccc--CceEEEeecCCeeEEEecCCce-EE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEE
Confidence            4588999999987  8999999999999999987643 33   6889999999888853332 12599999999999999


Q ss_pred             CCCCce----eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE-EEccC-C---C
Q 001258          496 ATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM-AYSAD-G---T  566 (1113)
Q Consensus       496 ~~~~~~----~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~-~~s~~-~---~  566 (1113)
                      ++.++.    +....||...|.++...  ++|..+++|+-|.+|++|+..+ ...-.++.....-... ...+. +   .
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~--~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVD--SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEec--CCCCeEEeecccceeeecccCC-CccccccccchhhhhhhhhhhcccccCc
Confidence            887653    34456999999999854  5668999999999999999322 1111110000000000 00000 0   0


Q ss_pred             -eEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          567 -RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       567 -~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                       ..+.||+ ..+..+.|++ ...+++++.|.+|+.||+.++..+..+...   ...+|+.++|..++|++|+.|..|++|
T Consensus       253 ~vtl~GHt-~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~  327 (423)
T KOG0313|consen  253 LVTLEGHT-EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLW  327 (423)
T ss_pred             eEEecccc-cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeec
Confidence             1122222 2455555555 345999999999999999999999888654   357999999999999999999999999


Q ss_pred             EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258          646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  725 (1113)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  725 (1113)
                      |.+++...                                                                        
T Consensus       328 DPR~~~gs------------------------------------------------------------------------  335 (423)
T KOG0313|consen  328 DPRTGDGS------------------------------------------------------------------------  335 (423)
T ss_pred             CCCCCCCc------------------------------------------------------------------------
Confidence            98765100                                                                        


Q ss_pred             eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258          726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  805 (1113)
Q Consensus       726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g  805 (1113)
                                                  +....                                               
T Consensus       336 ----------------------------~v~~s-----------------------------------------------  340 (423)
T KOG0313|consen  336 ----------------------------VVSQS-----------------------------------------------  340 (423)
T ss_pred             ----------------------------eeEEe-----------------------------------------------
Confidence                                        00000                                               


Q ss_pred             cccccccCCCCCCCCccEEEEecCCCE-EEEEe-CCeEEEEECCCCc-eeeeecCCCCCeeEEEEecCCCcEEEEEecCC
Q 001258          806 IMMTNDVTDSNPEEAVPCFALSKNDSY-VMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS  882 (1113)
Q Consensus       806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~-l~~~s-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg  882 (1113)
                            +.  +|.+.|.++.++|...+ |++++ |+++++||+++.+ .+..+.+|...|.++.|.  ++.++++|+.|.
T Consensus       341 ------~~--gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD~  410 (423)
T KOG0313|consen  341 ------LI--GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGADN  410 (423)
T ss_pred             ------ee--cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCcc
Confidence                  11  28888999999987765 55666 9999999999877 889999999999999998  577999999999


Q ss_pred             cEEEEEc
Q 001258          883 SIQIYNV  889 (1113)
Q Consensus       883 ~v~iwd~  889 (1113)
                      +|+|+.-
T Consensus       411 ~l~i~~~  417 (423)
T KOG0313|consen  411 KLRIFKG  417 (423)
T ss_pred             eEEEecc
Confidence            9999864

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=7e-27  Score=240.64  Aligned_cols=247  Identities=20%  Similarity=0.242  Sum_probs=201.6

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      ...+.|.+++|||...+=+|+.+ .-.|.||+..+.....                   .+..-...|++++|-.||++|
T Consensus        24 ke~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Ll   83 (487)
T KOG0310|consen   24 KEHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLL   83 (487)
T ss_pred             cccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEE
Confidence            35689999999997776455543 4689999988766554                   244456689999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      |+|+..|.|+|+|+++...++   .+.+|..+|..+.|+|++.. ++++|++|+.+++||+.+...+..+.+|++.|.|.
T Consensus        84 aaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   84 AAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             EccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            999999999999977755455   68899999999999999887 89999999999999999999877999999999999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +|++-. +.+++|||.||.|++||++.......--.|+.+|.++.+-|.|.                     .+++ ...
T Consensus       160 ~~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~ias-AgG  216 (487)
T KOG0310|consen  160 DISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIAS-AGG  216 (487)
T ss_pred             ccccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEE-cCC
Confidence            998754 47999999999999999998754444445777888888887776                     3444 446


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.|++||+.+|........ .|...|+|+++..++..|++++-|+.+++||+.+-
T Consensus       217 n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  217 NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            7999999986654433332 14568999999999999999999999999996543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-25  Score=218.91  Aligned_cols=206  Identities=24%  Similarity=0.352  Sum_probs=170.2

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~  492 (1113)
                      .+..-.+.|+++.|+++|.+|++++.|.+++|||..++++++   ++..++-.|..++|......  ++.++.  |.+|+
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~~--~i~sStk~d~tIr   83 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSNT--VIHSSTKEDDTIR   83 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCce--EEEccCCCCCceE
Confidence            344567799999999999999999999999999999999877   67777889999999988874  555554  89999


Q ss_pred             EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      .-++.+.+.++.|.||...|.+++.+|..  ..+++++.|++|++||++..++...+.....                  
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~------------------  143 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR------------------  143 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCC------------------
Confidence            99999999999999999999999988766  6899999999999999997666554443332                  


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCC--ceEEEEccC-CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                           .+.+|+|+|-.++++...+.|++||++.-  .+...+... ....+.+.+.|+|||++|+.++..+.+.+.|.-+
T Consensus       144 -----pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  144 -----PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             -----cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence                 24566677777888888889999999863  344555433 3345678999999999999999999999999877


Q ss_pred             C
Q 001258          650 G  650 (1113)
Q Consensus       650 ~  650 (1113)
                      |
T Consensus       219 G  219 (311)
T KOG1446|consen  219 G  219 (311)
T ss_pred             C
Confidence            7

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=259.67  Aligned_cols=244  Identities=19%  Similarity=0.339  Sum_probs=215.1

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      |...+.|..|+ ++  .+++|+.+.+|++||..++..+..                  .+.||.+.|++++|..-+.+|+
T Consensus       207 ~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~lv  265 (537)
T KOG0274|consen  207 DDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKLV  265 (537)
T ss_pred             Ccchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEEE
Confidence            67899999999 44  389999999999999999988763                  3889999999999988899999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +|+.|.+++|||..+|++..   ++.+|.+.|.++...+.    ++++|+.|.+|++|++.++.++..+.+|.++|.++.
T Consensus       266 sgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~  338 (537)
T KOG0274|consen  266 SGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQ  338 (537)
T ss_pred             EEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEE
Confidence            99999999999999999887   78899999999998653    688999999999999999999999999999999998


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1113)
                      .+    +.++++|+.|++|++||+.+.+++..+.+|...|.++.+....                      .+++|+.|+
T Consensus       339 ~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~----------------------~~~Sgs~D~  392 (537)
T KOG0274|consen  339 LD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSEN----------------------RLLSGSLDT  392 (537)
T ss_pred             ec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcc----------------------eEEeeeecc
Confidence            54    3699999999999999999999999999999999998776542                      499999999


Q ss_pred             cEEEEECCCC-ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258          597 SIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       597 ~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      .|++||+.+. +++..+..|..  .+..  ....+++|++++.|++|++||..++ ++.+.+.+
T Consensus       393 ~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~~~  451 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTLEG  451 (537)
T ss_pred             ceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeeecc
Confidence            9999999999 89999987754  3433  3446889999999999999999888 66665544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.6e-27  Score=258.50  Aligned_cols=272  Identities=14%  Similarity=0.174  Sum_probs=203.0

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe------------------------------ee------e
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL------------------------------RN------F  399 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~------------------------------~~------~  399 (1113)
                      .|.+.||++.||+||+| ||+|+.||.|+||.+...+....                              ..      .
T Consensus       265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            49999999999999996 99999999999999876221100                              00      0


Q ss_pred             -----eeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEc
Q 001258          400 -----KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  474 (1113)
Q Consensus       400 -----~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  474 (1113)
                           .+.+....-.+.+...+.||.+.|..+.||.++ +|++++.|.+|+||++...++++    .-.|.+-|+||+|+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN  418 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence                 000000000111223588999999999999755 88999999999999999999887    33699999999999


Q ss_pred             CCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC
Q 001258          475 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR  554 (1113)
Q Consensus       475 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  554 (1113)
                      |-+.+ ||++|+-|+.||||++...+.+.-.. -..-|+++||.|  ||++.+.|+.+|.+++|+....+.......+  
T Consensus       419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~P--dGk~avIGt~~G~C~fY~t~~lk~~~~~~I~--  492 (712)
T KOG0283|consen  419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSP--DGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR--  492 (712)
T ss_pred             ccCCC-cEeecccccceEEeecCcCeeEeehh-hhhhheeEEecc--CCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence            98776 89999999999999998777655444 448899999764  5789999999999999998865544322111  


Q ss_pred             ceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE
Q 001258          555 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  633 (1113)
Q Consensus       555 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  633 (1113)
                              -.+.+-   ...+.|+.+.|.|.. ..+++.+.|..|+|||.++..++..+++......-....|+.||++|
T Consensus       493 --------~~~~Kk---~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  493 --------LHNKKK---KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             --------eccCcc---ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence                    000000   001134444444332 25888899999999999999999999876655555678999999999


Q ss_pred             EEEECCCcEEEEEcCCC
Q 001258          634 AVSTNDNGIKILATSDG  650 (1113)
Q Consensus       634 ~~~~~dg~i~iwd~~~~  650 (1113)
                      ++++.|..|++|+....
T Consensus       562 Vs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEeecCceEEEEeCCCC
Confidence            99999999999997543

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=8.6e-27  Score=219.24  Aligned_cols=287  Identities=17%  Similarity=0.255  Sum_probs=224.6

Q ss_pred             EEEEEcCC--CCeEEEEEec-----CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CC
Q 001258          362 MSMDFHPV--QQTLLLVGTN-----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GS  433 (1113)
Q Consensus       362 ~~~~~spd--g~~ll~~gs~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~  433 (1113)
                      .++.|||-  ++..+|+++.     .|.+.|-++..++.+..  ++.+|               -.+.+..++||++ ..
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~d---------------~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSYD---------------TEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEeee---------------cccceeEeeecCCCcc
Confidence            68899994  4433444332     57899999875554432  22222               3458999999994 56


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  513 (1113)
                      .+++++.||+++|||+.-.  -.++..++.|...|.++.|++..++ .++++|-|++|++|+...++.+.++.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            7788899999999995432  3355578999999999999998877 677789999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      ...|+|... +++++++.|+++++||++.......++.|...+.++.|+.-..                    +.+++|+
T Consensus       152 ~a~~sp~~~-nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~  210 (311)
T KOG0277|consen  152 QAAFSPHIP-NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG  210 (311)
T ss_pred             EEecCCCCC-CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence            999998654 7999999999999999998887777888888788887776554                    3589999


Q ss_pred             cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          594 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      .|+.|+.||++..+ ++..+.+|  .-.|+.+.||| ...+|++++.|-+++|||...+...+.....|+.-+...    
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~----  284 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL----  284 (311)
T ss_pred             CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence            99999999998744 56666555  55899999999 457899999999999999987766666666665432211    


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  731 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~  731 (1113)
                                                         +... .+...+++.+.|..+.+|+-
T Consensus       285 -----------------------------------Dws~-~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  285 -----------------------------------DWSL-FDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             -----------------------------------cccc-ccCceeeecccccceeeecc
Confidence                                               1111 25778999999999999973

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=5.3e-27  Score=226.32  Aligned_cols=247  Identities=13%  Similarity=0.210  Sum_probs=201.4

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      |...|..+.|+|....|++++.|+++++||+........-                    ..+   .....|.++.|.|.
T Consensus       171 H~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~--------------------K~~---qd~~~vrsiSfHPs  227 (430)
T KOG0640|consen  171 HVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF--------------------KVF---QDTEPVRSISFHPS  227 (430)
T ss_pred             ccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH--------------------HHh---hccceeeeEeecCC
Confidence            8899999999999999999999999999998743211000                    001   14678999999999


Q ss_pred             CCEEEEEeC-CeEEEEECCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec-ccc-c
Q 001258          830 DSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHS-K  903 (1113)
Q Consensus       830 ~~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~-~  903 (1113)
                      |.+|++|.| .++++||+.+.+|...-   ..|...|+++.+++ .+++.++|+.||.|+|||--+++|+.++. +|. .
T Consensus       228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs  306 (430)
T KOG0640|consen  228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS  306 (430)
T ss_pred             CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc
Confidence            999999995 78999999998886553   45788999999999 89999999999999999999999998874 465 4


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT  981 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~  981 (1113)
                      .|.+..|+.+|+++.+.+.|.+|++|.+.+++....-.-.-..+..   ..-+...|+....|++.-  ..+.++-||.+
T Consensus       307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWdaR  383 (430)
T KOG0640|consen  307 EVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDAR  383 (430)
T ss_pred             eeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeecccc
Confidence            6999999999999999999999999999997654321111111111   123556777777777773  45679999999


Q ss_pred             ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      ++..+..+.. +|++.+..+.-||.+.-+++++.|-.+++|--
T Consensus       384 tadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  384 TADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             chhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            9998888775 89999999999999999999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=221.17  Aligned_cols=240  Identities=20%  Similarity=0.251  Sum_probs=207.9

Q ss_pred             CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc--EEEEEecCCcEEEEEcccc
Q 001258          816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~v~iwd~~~~  892 (1113)
                      .|...|+++|+  ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ ...  .|.+|++||.|.+|+..++
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence            49999999998  789999998 99999999999999999999999999999998 543  8899999999999999999


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  972 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d  972 (1113)
                      +++..+++|.+.|+.++.+|.+++-++.+.|+.+++||+-+++....  ....  +     ..+.+.|+|.|.+++++..
T Consensus       118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v--~~L~--~-----~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFV--LNLK--N-----KATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcccee--eccC--C-----cceeeEEcCCCCEEEEEec
Confidence            99999999999999999999999999999999999999988765322  1111  1     2356999999999999999


Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEE
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~ 1052 (1113)
                      ..|-+|.+.+.........   ...+.++.|. ++..|++|++|+.|.+||.++....+.+.       +|..+|..+..
T Consensus       189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~RVK~i~~  257 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENRVKDIAS  257 (362)
T ss_pred             cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhheeeeEE
Confidence            9999999998888777653   3567777775 56789999999999999999988887776       99999998655


Q ss_pred             EEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258         1053 AAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1053 ~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                      --.| ++.+|++++.||.|+|||+...
T Consensus       258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNP-EHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecC-CceEEEEeccCceEEEEEcccc
Confidence            4445 6789999999999999999876

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=256.07  Aligned_cols=273  Identities=15%  Similarity=0.244  Sum_probs=214.2

Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc------C---------CCC--------------ceee------
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER------N---------SSG--------------KATA------  793 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~------~---------~~~--------------~~~~------  793 (1113)
                      .|.+.|.++.|++||++||++|.|+.|+||.+.....      .         ..+              ....      
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876110      0         000              0000      


Q ss_pred             eecCeecCCCCcc---ccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEec
Q 001258          794 SVAPQLWQPPSGI---MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  869 (1113)
Q Consensus       794 ~~~~~lw~~~~g~---~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~  869 (1113)
                      ... .+.+.....   .....+.  +|...|..+.||.++ +|++++ |.+||+|++....|+..|. |...|||++|+|
T Consensus       345 s~~-~~~p~~~f~f~ekP~~ef~--GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPC-VLLPLKAFVFSEKPFCEFK--GHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP  419 (712)
T ss_pred             Ccc-ccCCCccccccccchhhhh--ccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence            000 011111111   0111233  499999999999876 677777 9999999999999999998 999999999999


Q ss_pred             CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001258          870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  949 (1113)
Q Consensus       870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  949 (1113)
                      .|.+|+++|+-||.||||++...+++.-...+ +-|++++|+|||+..+.|+-+|.+++|+....+......+.......
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            99999999999999999999987766544444 78999999999999999999999999999887766655555555555


Q ss_pred             CCCCCCceEEEccCCc--EEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          950 PTAQSDTRVQFHQDQI--HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       950 ~~~~~i~~~~~spdg~--~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      .....|+.+.|.|...  .|+++.|..|+|||..+...+..|..-.....-....|+.||++|+++++|..|+||+++..
T Consensus       499 ~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  499 KQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             ccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            5455799999997544  77789999999999998888888874333445577899999999999999999999998543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.5e-26  Score=261.60  Aligned_cols=304  Identities=18%  Similarity=0.263  Sum_probs=238.8

Q ss_pred             ccCceEEEEEeCCCceEEEee--cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          750 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                      +...|.++.++|+|..+++++  .|+.++||+.+.-...          ...++..-...+.   .-..|...|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~----------~~~~~~~l~k~l~---~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDE----------KEEKNENLPKHLC---TMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccch----------hhhhhcccchhhe---eeccccCceeEEEEC
Confidence            456689999999999999999  7889999987632110          0112221111111   112389999999999


Q ss_pred             cCCCEEEEEe-CCeEEEEECCC------------------CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          828 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                      |||++||+|+ |+.|.||+...                  .++...+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            9999999999 67789999762                  235677899999999999999 899999999999999999


Q ss_pred             cccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                      ..+.+.+..+++|.+.|-++.|.|-|+++||-+.|++|+||++......+.  +..+..+.+.......+.|||||++|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~--It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS--ITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe--eccchhhCCCcceeeecccCCCcCeec
Confidence            999999999999999999999999999999999999999999777544322  222223333334678899999999999


Q ss_pred             E--EcC---CeEEEEeCCccceeeccccCCCCCCeeEEEECCC-----CC------------EEEEEeCCCcEEEEecCC
Q 001258          969 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       969 ~--~~d---~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~------------~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      +  +.+   ..+.|.+..+.+.-..+.  +|.+++.++.|+|.     .+            .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            8  323   368899988888777776  89999999999881     11            578999999999999987


Q ss_pred             CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1027 LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1027 ~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      -+.+..+.  ..    -...|  +.++|+| ||..|..+|.||+|.+..++..|
T Consensus       314 ~RPl~vi~--~l----f~~SI--~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIH--NL----FNKSI--VDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhh--hh----hcCce--eeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            77765433  00    01223  3699999 89999999999999999998776

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=218.23  Aligned_cols=322  Identities=16%  Similarity=0.236  Sum_probs=232.8

Q ss_pred             EEEEECCCCceEEEEc---cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258          598 IKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  674 (1113)
Q Consensus       598 i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1113)
                      .+-|+.+..+..+.+.   ..+|...|++++|+.||++|++++.|++|++|++.+-..     +.|....          
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~-----~eHr~~R----------  127 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN-----KEHRCIR----------  127 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh-----hhhhHhh----------
Confidence            4456655544433331   224456899999999999999999999999999876311     1111000          


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                                                                                          ..+    ..+.-
T Consensus       128 --------------------------------------------------------------------~nv----e~dhp  135 (420)
T KOG2096|consen  128 --------------------------------------------------------------------QNV----EYDHP  135 (420)
T ss_pred             --------------------------------------------------------------------ccc----cCCCc
Confidence                                                                                000    12245


Q ss_pred             EEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEE
Q 001258          755 SRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  833 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l  833 (1113)
                      +.+.|+||-+.+++.... ..+++|.+...+-   |...-.  ..-||-.  .     + ...|.-.+..+-+..++++|
T Consensus       136 T~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--~-----f-~~kh~v~~i~iGiA~~~k~i  202 (420)
T KOG2096|consen  136 TRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--E-----F-ERKHQVDIINIGIAGNAKYI  202 (420)
T ss_pred             eEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--c-----c-chhcccceEEEeecCCceEE
Confidence            788999998877766654 6899998754321   111110  0112210  0     0 01266677778888899999


Q ss_pred             EEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc---cc-----eeeeeecccccC
Q 001258          834 MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR---VD-----EVKSKLKGHSKR  904 (1113)
Q Consensus       834 ~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~---~~-----~~~~~l~~h~~~  904 (1113)
                      ++++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+++-.--|++|.+-   .|     ..+-.|+||...
T Consensus       203 msas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~sa  280 (420)
T KOG2096|consen  203 MSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSA  280 (420)
T ss_pred             EEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhh
Confidence            9999 8899999998 888888887777788899999 99999999999999999873   22     234578999999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC---CCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  981 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~  981 (1113)
                      |+.++||++.+.++|+|.||+++|||++-.-.....+.....+.   ....+....+.++|.|+.||++....+.+|..+
T Consensus       281 V~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se  360 (420)
T KOG2096|consen  281 VLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASE  360 (420)
T ss_pred             eeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcc
Confidence            99999999999999999999999999865322211111111110   011134458999999999999999999999999


Q ss_pred             ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          982 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       982 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                      +|+....+. +.|...|.+++|++||+++++++ |..++|+.
T Consensus       361 ~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  361 DGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            998877766 47899999999999999999998 88888876

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=2.7e-27  Score=237.84  Aligned_cols=286  Identities=19%  Similarity=0.330  Sum_probs=233.8

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.+.|+++.|.++++  .+++++.|+.+++|
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW  246 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence            467899999999999999999999999999999998776 334447888899999999999999  68999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ++.+.+...++.||.+.|+++.|.-..  ..+++|+.|.+|+.||+....+..++- ....+..+..+            
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~------------  311 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS------------  311 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec------------
Confidence            999999999999999999999876544  349999999999999998755544322 22223333322            


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                 ...+++|-.|+.|++||.++..+......++   .|+++..++++..+.+++.|.++.+.|+.+. +..
T Consensus       312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~  376 (459)
T KOG0288|consen  312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR  376 (459)
T ss_pred             -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence                       1237788899999999999999999887765   5999999999999999999999999998765 221


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+                                                                             
T Consensus       377 ~~~-----------------------------------------------------------------------------  379 (459)
T KOG0288|consen  377 QTF-----------------------------------------------------------------------------  379 (459)
T ss_pred             EEe-----------------------------------------------------------------------------
Confidence            111                                                                             


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                               +..|-                                                  
T Consensus       380 -------------------------sA~g~--------------------------------------------------  384 (459)
T KOG0288|consen  380 -------------------------SAEGF--------------------------------------------------  384 (459)
T ss_pred             -------------------------ecccc--------------------------------------------------
Confidence                                     11110                                                  


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY  887 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg~v~iw  887 (1113)
                       ......+.+.|||++.|+++|+ ||.|+||++.++++...+.....  .|++++|+| .|..|++++.++.+.+|
T Consensus       385 -k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  385 -KCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             -ccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence             0122367789999999999998 99999999999999888765554  499999999 89999999999999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=9.8e-26  Score=254.26  Aligned_cols=287  Identities=18%  Similarity=0.263  Sum_probs=239.5

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      .|...+.+..|.  +.++++++.|++|++||..++..+..  .+.||.+.|++++|..-+.  ++++|+.|.+++|||..
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            467789999997  77899999999999999999887652  3899999999999987455  79999999999999999


Q ss_pred             CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      +|.|.+++.+|.+.|.++....    ..+++|+.|.+|++|++.++..+..+.+|...|.++...  +            
T Consensus       280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~------------  341 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E------------  341 (537)
T ss_pred             CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C------------
Confidence            9999999999999999987432    578889999999999999988888888888888888776  2            


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                               .++++|+.|++|.+||+.+++++..+.+|  ...|.++.+.+. ..+++|+.|++|++||+.+..+++..+
T Consensus       342 ---------~~lvsgs~d~~v~VW~~~~~~cl~sl~gH--~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  342 ---------PLLVSGSYDGTVKVWDPRTGKCLKSLSGH--TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             ---------CEEEEEecCceEEEEEhhhceeeeeecCC--cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence                     26999999999999999999999999986  558999988765 899999999999999998774333333


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      .+|                                                                             
T Consensus       410 ~~h-----------------------------------------------------------------------------  412 (537)
T KOG0274|consen  410 QGH-----------------------------------------------------------------------------  412 (537)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            222                                                                             


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                                                                                                      
T Consensus       413 --------------------------------------------------------------------------------  412 (537)
T KOG0274|consen  413 --------------------------------------------------------------------------------  412 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      ..-+..+.  ..+++|++++ |++|++||..++++++++.+ |...|.++++.   ...+++++.||.+++||+.++++.
T Consensus       413 ~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  413 TSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cccccccc--cccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence            22221122  2566788887 99999999999999999998 67888888876   247888999999999999999988


Q ss_pred             eeecccc
Q 001258          896 SKLKGHS  902 (1113)
Q Consensus       896 ~~l~~h~  902 (1113)
                      +.+-.+.
T Consensus       488 ~~l~~~~  494 (537)
T KOG0274|consen  488 RTLLSTD  494 (537)
T ss_pred             hhhhhcc
Confidence            8774443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.8e-26  Score=234.53  Aligned_cols=286  Identities=17%  Similarity=0.254  Sum_probs=232.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....|.+++|+|...+=++....-.+.+|+...                      -.......   .....++++.|-.|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~~s---rFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKTFS---RFKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhhHH---hhccceeEEEeecC
Confidence            457899999999776655555555677765432                      11111111   15678999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  908 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  908 (1113)
                      |+++++|. .|.|+|||+.+...++.+.+|..++..+.|+|+++.++++|++|+.+++||+.+......+.+|.+.|.+.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            99999998 69999999888778899999999999999999999999999999999999999988877999999999999


Q ss_pred             EEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceee
Q 001258          909 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  987 (1113)
Q Consensus       909 ~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~  987 (1113)
                      +|+|-. ..++|||.||+|++||+....   ........+     .+|..+.+-|.|..++++....++|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999864 588999999999999998843   112222222     37899999999999999999999999999665544


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                      .... .|...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+.        -.+.|.+  ++.+| |+..++.|..
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~--------~~~pvLs--iavs~-dd~t~viGms  299 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK--------YPGPVLS--IAVSP-DDQTVVIGMS  299 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee--------cccceee--EEecC-CCceEEEecc
Confidence            4332 489999999999999999999999999999999999998875        2345665  56667 6789999999


Q ss_pred             CCcEEEEeccCCC
Q 001258         1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus      1068 Dg~v~vW~~~~~~ 1080 (1113)
                      ||.+.+=+...++
T Consensus       300 nGlv~~rr~~~k~  312 (487)
T KOG0310|consen  300 NGLVSIRRREVKK  312 (487)
T ss_pred             cceeeeehhhccc
Confidence            9999887655554

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.3e-26  Score=218.13  Aligned_cols=251  Identities=13%  Similarity=0.257  Sum_probs=210.0

Q ss_pred             eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258          352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  430 (1113)
Q Consensus       352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  430 (1113)
                      .+.+.-.+.+..|+||+.-...+++++.||.++|||......                  +...++.|..+|.++.|++ 
T Consensus        54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~  115 (311)
T KOG0277|consen   54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV  115 (311)
T ss_pred             EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence            344556789999999999888899999999999999543221                  2225889999999999999 


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      +++.+++++-|++|++|+...+..+.   ++.||...|...+|+|.... +++++|.|+++++||++.......+..|..
T Consensus       116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~  191 (311)
T KOG0277|consen  116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNS  191 (311)
T ss_pred             cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccc
Confidence            66778888999999999999887666   89999999999999998776 899999999999999987555555899999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      .|.++.|+... ..+++||+.|+.|++||++..+. +..+.+|+-.|..+.|||...                    ..|
T Consensus       192 Eil~cdw~ky~-~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~lL  250 (311)
T KOG0277|consen  192 EILCCDWSKYN-HNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SLL  250 (311)
T ss_pred             eeEeecccccC-CcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hHh
Confidence            99999997654 47999999999999999997654 457788888999999998765                    358


Q ss_pred             EEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEc
Q 001258          590 LAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~  647 (1113)
                      ++++.|-+++|||... ...+.+...|  ...+..+.|++ ++.++|+++-|+.+.||+.
T Consensus       251 aSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  251 ASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence            8999999999999874 3455566555  44688899998 7889999999999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.1e-25  Score=215.44  Aligned_cols=247  Identities=17%  Similarity=0.209  Sum_probs=193.9

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc-ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      ...+.|.+++|||....++++||-||+|++|+++.. ....                  .....|.++|.+++||.||..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK   86 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence            367999999999976667889999999999999863 3221                  246789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      +++|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+-.|+|||.|++|+.||++...++.++. -...+.+
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            999999999999999999644    47789999999999887765589999999999999999999998887 4567777


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-e-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      +..-.    .+++.+..++.|.+++++++...... . ...-.+.+                     ++...+....+.|
T Consensus       162 ~Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~---------------------va~f~d~~~~alG  216 (347)
T KOG0647|consen  162 ADVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRC---------------------VACFQDKDGFALG  216 (347)
T ss_pred             hhccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeE---------------------EEEEecCCceEee
Confidence            65322    47888999999999999865443321 1 11123344                     4444444457889


Q ss_pred             ecCCcEEEEECCCC--ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          593 GDDFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +-+|.+-|..++.+  +.-..++.|..       ...|++++|+|.-..|++++.||++.+||-...
T Consensus       217 siEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  217 SIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             eecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence            99999999999886  33344444432       235789999999899999999999999996543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=4.4e-26  Score=257.91  Aligned_cols=280  Identities=20%  Similarity=0.306  Sum_probs=223.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      ++..|.++..+|||.. +|||+  .||.++||+.+.--.    ..+.++..   .+........|.+.|+|+.|||||+|
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence            3567999999999996 99999  899999999753110    00011111   22233357789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccC----------C-----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258          435 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  499 (1113)
                      ||+|++|+.|.||....          |     +..+....+.+|...|..++|+|++.  +++++|.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999872          0     12345567999999999999999999  8999999999999999999


Q ss_pred             ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC------CCceEEEEEccCCCe------
Q 001258          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTR------  567 (1113)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~------  567 (1113)
                      +++.++.+|.+.|..+.|.|  -|+|+++-+.|++|++|++.+-.....+..+      ...+..+.|||||.+      
T Consensus       162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            99999999999999999765  5589999999999999997765555544433      336788999999993      


Q ss_pred             --------------------EEeccccCceeEEEecCC-------------CC----EEEEEecCCcEEEEECCCCceEE
Q 001258          568 --------------------TYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT  610 (1113)
Q Consensus       568 --------------------~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~  610 (1113)
                                          .+.||+. .+.++.|+|.             .+    .+++|+.|++|.||.....+++.
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence                                3445555 8889999873             11    56779999999999997777765


Q ss_pred             EEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ....-. ...|..++|+|||..|++++.||+|.++.....
T Consensus       319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            553222 246899999999999999999999999988653

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=244.33  Aligned_cols=253  Identities=19%  Similarity=0.262  Sum_probs=208.4

Q ss_pred             CCCCcE---EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          357 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       357 h~~~V~---~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      |...|.   ++..+..+.+.|++|+.||.|++|++.......            +.++.. .+..|.+.|+.++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~~a-sme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPYIA-SMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccchhh-hhhhhHhHHhhHHhhcCCC
Confidence            444455   556665444359999999999999987543321            122222 4788999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE-cCCCCeeEEEEecCCCcEEEEeCCCC--ceeeE------
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNG--AKQYI------  504 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~~~~~~~l~s~s~d~~i~iwd~~~~--~~~~~------  504 (1113)
                      .|+++|.|-+|++|+...+. -....+++.|.+.|.|++. -++..  ++||||-|+.|.+||+.+|  +.+.+      
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998773 1233378899999999999 66666  8999999999999999987  23332      


Q ss_pred             --ee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          505 --FE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       505 --~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                        +. |+...|.+++.+  ++|..+++|+..+.+++||.++...+..+.+|...|..+..+.||+               
T Consensus       164 ~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------  226 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------  226 (735)
T ss_pred             ccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence              22 788899999854  5557999999999999999999999999999988888888887776               


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                            .+++++.||+|++||+...+++.++..|..  .|.++..+|+=..+++|+.||.|..-|+.+.
T Consensus       227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                  699999999999999999999999988854  5999999999999999999999998888775

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=1.9e-25  Score=211.10  Aligned_cols=247  Identities=18%  Similarity=0.266  Sum_probs=208.4

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  432 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  432 (1113)
                      +.+|...|.+|+|+.+|.+ |++|+.|+++.+|+++.......                 ....+|.+.|-.++|+| +.
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~   77 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHP   77 (313)
T ss_pred             hhhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCC
Confidence            3458999999999999997 99999999999999987744321                 14789999999999998 77


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ..|++++.|.+|++||+..+++...+   . ..+.=..+.|+|+|.  +++.++.|..|.+.|.++.+.....+ ..-.+
T Consensus        78 d~~atas~dk~ir~wd~r~~k~~~~i---~-~~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~  150 (313)
T KOG1407|consen   78 DLFATASGDKTIRIWDIRSGKCTARI---E-TKGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEV  150 (313)
T ss_pred             cceEEecCCceEEEEEeccCcEEEEe---e-ccCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-cccee
Confidence            89999999999999999999987633   2 234456789999999  79999999999999998887766554 44567


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .-++|+.++  ++++.....|+|.|-.....+++..+..|...+.++.|+|+|+                     ++++|
T Consensus       151 ne~~w~~~n--d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gr---------------------yfA~G  207 (313)
T KOG1407|consen  151 NEISWNNSN--DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGR---------------------YFATG  207 (313)
T ss_pred             eeeeecCCC--CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCc---------------------eEeec
Confidence            778887444  5677677789999999998888888888887777777777776                     79999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.|..+.+||++..-+++.+....  -+|+.++|+.||++||+++.|..|-|=++.+|
T Consensus       208 sADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS~dg~~lASaSEDh~IDIA~vetG  263 (313)
T KOG1407|consen  208 SADALVSLWDVDELICERCISRLD--WPVRTLSFSHDGRMLASASEDHFIDIAEVETG  263 (313)
T ss_pred             cccceeeccChhHhhhheeecccc--CceEEEEeccCcceeeccCccceEEeEecccC
Confidence            999999999999999999887664  47999999999999999999999988888777

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=7.5e-25  Score=247.55  Aligned_cols=262  Identities=13%  Similarity=0.136  Sum_probs=197.7

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  435 (1113)
                      |-..|....+++|+.. +++++.+.....|+...+..+.      +.-..+..+.....+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4566778888889774 6777788888899876654321      11111111122235789999999999999 89999


Q ss_pred             EEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258          436 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      |+|+.|++|+|||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999986532    1234478899999999999998644 7999999999999999999999999999999


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-eEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      |.+++|++  +|.+|++++.|+.|++||++++.....+..|... ...+.|.                     +++..++
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~---------------------~~~~~iv  227 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA---------------------KRKDLII  227 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEc---------------------CCCCeEE
Confidence            99999876  4579999999999999999987766666555432 2233344                     4444566


Q ss_pred             EEe----cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258          591 AAG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  650 (1113)
Q Consensus       591 ~~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  650 (1113)
                      +++    .|+.|++||+++.. .+.....+. ...+....|++++++|++++ .|+.|++||+.++
T Consensus       228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EEecCCCCCCeEEEEeCCCCCCceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            543    47999999998754 333333222 23455667899999999887 5999999999887

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.4e-25  Score=231.32  Aligned_cols=222  Identities=21%  Similarity=0.302  Sum_probs=162.7

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  492 (1113)
                      .+.+|+..|.++++.|.|.+|++|+-|.+|+.||...-.. .+.+..+. .....|.++.|++.|.++++++|  ...++
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqak  239 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAK  239 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--Cccee
Confidence            4788999999999999999999999999999999975321 11111222 23347999999999996444444  56889


Q ss_pred             EEeCCCCceeeEe-------------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          493 VWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       493 iwd~~~~~~~~~~-------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                      |+| +.|..+..+             +||...++|.+|+|... ..+++++.||++++||+...........+..     
T Consensus       240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-----  312 (641)
T KOG0772|consen  240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-----  312 (641)
T ss_pred             EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc-----
Confidence            999 555544332             48999999999999765 5899999999999999987554332211100     


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                         ..|.       .-.+..++|+++++++++|+.||.|.+|+......   ...-..|.....|+|+.||+||++|++-
T Consensus       313 ---~~g~-------Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSR  382 (641)
T KOG0772|consen  313 ---AGGK-------RVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSR  382 (641)
T ss_pred             ---CCCc-------ccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhc
Confidence               0011       11455667777777899999999999999754322   2222344444589999999999999999


Q ss_pred             ECCCcEEEEEcCCCcccee
Q 001258          637 TNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       637 ~~dg~i~iwd~~~~~~~~~  655 (1113)
                      +.|+++++||+....+++.
T Consensus       383 g~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  383 GFDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             cCCCceeeeeccccccchh
Confidence            9999999999987654443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.2e-26  Score=244.07  Aligned_cols=367  Identities=16%  Similarity=0.190  Sum_probs=268.8

Q ss_pred             EEEEc-CCCCeEEEEeCCCeEEEEEccCCcee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001258          425 RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-  499 (1113)
Q Consensus       425 ~l~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-  499 (1113)
                      .+..+ |+++||.+||.||.|++|++......   .....+..|.+.|+.++...+++  .|+++|.|.+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            44444 47788999999999999998754321   12346889999999999999998  6999999999999999887 


Q ss_pred             -ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCcee
Q 001258          500 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1113)
Q Consensus       500 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  578 (1113)
                       -|+.++..|.+.|.|+++- ..+..++++||.|+.|.+||+.++......                             
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~-----------------------------  156 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVA-----------------------------  156 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhh-----------------------------
Confidence             6788999999999999963 345579999999999999999875331100                             


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                                    + .+.+..-++..          +....|++++-++.|..+++|+..+.+++||..+..+.++   
T Consensus       157 --------------s-~n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk---  208 (735)
T KOG0308|consen  157 --------------S-FNNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK---  208 (735)
T ss_pred             --------------h-ccccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee---
Confidence                          0 00111111111          2245688999999999999999999999999877632211   


Q ss_pred             cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258          659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  738 (1113)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~  738 (1113)
                                                                                                      
T Consensus       209 --------------------------------------------------------------------------------  208 (735)
T KOG0308|consen  209 --------------------------------------------------------------------------------  208 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCC
Q 001258          739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  818 (1113)
Q Consensus       739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~  818 (1113)
                                                                                               +.  +|.
T Consensus       209 -------------------------------------------------------------------------Lr--GHT  213 (735)
T KOG0308|consen  209 -------------------------------------------------------------------------LR--GHT  213 (735)
T ss_pred             -------------------------------------------------------------------------ee--ccc
Confidence                                                                                     11  277


Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ..|.++..+.||..+++++ ||+|++||+...+|+.++..|...+.++..+| +-..+.+|+.||.|..=|+.+......
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl  292 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL  292 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence            7788888888998888887 99999999999999999999999999999999 889999999999999999988432222


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  977 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v  977 (1113)
                      +-....+|..+..+.+.+-+-+++.|+.|+-|.....                       ..+++.|.+...+.+....+
T Consensus       293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~-----------------------~~l~~s~~~~~~~T~~~~~~  349 (735)
T KOG0308|consen  293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPD-----------------------IALSVSGDLDFFSTDSNNHS  349 (735)
T ss_pred             eecCCCchhhhhhccccCCceeeeccccceecCCccc-----------------------cccccCCCCCcccccCCCcc
Confidence            3234456777777644444466778999999976541                       13444444444444444444


Q ss_pred             EeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      ++... ..  ....+| ...|..-++-.|.+++++-..+|.+.+||+-....+..+.
T Consensus       350 ~~~~~-tp--~~vi~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  350 CDLTN-TP--DSVIPG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             ccccC-CC--ceeccC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            44321 00  011111 4467777778899999999999999999997766665443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.3e-25  Score=242.06  Aligned_cols=258  Identities=16%  Similarity=0.260  Sum_probs=218.5

Q ss_pred             CCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC-C
Q 001258          342 STPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-P  419 (1113)
Q Consensus       342 ~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h  419 (1113)
                      +........+..+.. +.+.|+++.|+++|.+ ||+|..+|.|.|||..+.+.+..                   +.+ |
T Consensus       200 ylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h  259 (484)
T KOG0305|consen  200 YLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSH  259 (484)
T ss_pred             EEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCc
Confidence            334444555555555 4899999999999995 99999999999999998877653                   455 9


Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  499 (1113)
                      ...|.+++|+  +..+.+|+.|+.|..+|+...+....  ++.+|...|..++|++|+.  ++++|+.|+.+.|||....
T Consensus       260 ~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~  333 (484)
T KOG0305|consen  260 ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSP  333 (484)
T ss_pred             CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCc
Confidence            9999999998  77899999999999999998776543  4889999999999999999  7999999999999999888


Q ss_pred             ceeeEeeccCcCEEEEeeeecCCceEEEEEec--CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL--DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      .++..+..|.+.|.+++|+|... .+||+|+.  |++|++||..++..+.... .+..|.++.|++..+.          
T Consensus       334 ~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kE----------  401 (484)
T KOG0305|consen  334 EPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKE----------  401 (484)
T ss_pred             cccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCE----------
Confidence            99999999999999999999876 48888764  9999999999766555433 4556778888777653          


Q ss_pred             eEEEecCCCCEEEE--EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          578 GVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                 +++  |..++.|.||+..+.+.+..+.+|  ...|..++++|||..+++|+.|.++++|++-+.
T Consensus       402 -----------i~sthG~s~n~i~lw~~ps~~~~~~l~gH--~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  402 -----------LLSTHGYSENQITLWKYPSMKLVAELLGH--TSRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -----------EEEecCCCCCcEEEEeccccceeeeecCC--cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                       444  557889999999999999888877  457999999999999999999999999998764

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.4e-25  Score=229.51  Aligned_cols=301  Identities=20%  Similarity=0.255  Sum_probs=224.5

Q ss_pred             CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258          616 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  695 (1113)
Q Consensus       616 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1113)
                      .+...|.++++.|.|-.+++|+.|.+|++||+.......+.++.                                    
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~------------------------------------  208 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ------------------------------------  208 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc------------------------------------
Confidence            44668999999999999999999999999998654222221110                                    


Q ss_pred             ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258          696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  775 (1113)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  775 (1113)
                                                                  +.      ......|.++.|++.|..|++.+.....
T Consensus       209 --------------------------------------------l~------P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  209 --------------------------------------------LQ------PCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             --------------------------------------------cC------cccccccceeeecCCCCeEEEEecCcce
Confidence                                                        00      1145678999999999999999999999


Q ss_pred             EEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCce-
Q 001258          776 LLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-  851 (1113)
Q Consensus       776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~-  851 (1113)
                      +|+|-...       ..       -....|. .+.......+|...++|.+|+|+.+ .+++++ ||++|+||+...+. 
T Consensus       239 kl~DRdG~-------~~-------~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q  304 (641)
T KOG0772|consen  239 KLLDRDGF-------EI-------VEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ  304 (641)
T ss_pred             eEEccCCc-------ee-------eeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh
Confidence            99986521       11       1111222 1111122235888999999999876 445555 99999999985443 


Q ss_pred             eeeec-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---eeeeeccccc--CeEEEEEcCCCCEEEEEe
Q 001258          852 MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSK--RITGLAFSHALNVLVSSG  921 (1113)
Q Consensus       852 ~~~~~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~h~~--~V~~l~~s~d~~~L~s~s  921 (1113)
                      +..+.     +..-.++.++|++ |++++|+|+.||.|.+|+..+..   ....-.+|..  .|++|.||+||++|+|-|
T Consensus       305 ~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg  383 (641)
T KOG0772|consen  305 LQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG  383 (641)
T ss_pred             eeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc
Confidence            33332     2344689999999 99999999999999999985532   2234467887  999999999999999999


Q ss_pred             CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc-------CCeEEEEeCCccceeeccccCCC
Q 001258          922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-------ETQLAIFETTKLECVKQWVPRES  994 (1113)
Q Consensus       922 ~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~-------d~~v~v~d~~~~~~~~~~~~~~h  994 (1113)
                      .|+++++||++..+.........+..     ..-+.++||||.++|++|.       .+.+.+||..+.+.+..+...  
T Consensus       384 ~D~tLKvWDLrq~kkpL~~~tgL~t~-----~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~--  456 (641)
T KOG0772|consen  384 FDDTLKVWDLRQFKKPLNVRTGLPTP-----FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS--  456 (641)
T ss_pred             CCCceeeeeccccccchhhhcCCCcc-----CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC--
Confidence            99999999999865433222222221     2458899999999999842       357999999999998887643  


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          995 SAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      ...|..+.|.|.-..|++|+.||+++||--
T Consensus       457 ~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  457 TASVVRCLWHPKLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             CceEEEEeecchhhheeeecCCCceEEEEC
Confidence            778999999999999999999999999744

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.94  E-value=1.3e-25  Score=229.93  Aligned_cols=269  Identities=14%  Similarity=0.227  Sum_probs=218.8

Q ss_pred             ceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      ++...+.|.++|+.+.+.|....++|+++..+.|.|||+.+.......         .+.-.+...+.||...=+.++|+
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn  186 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN  186 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence            345567799999999999999999999999999999999765433210         00111223688999988899999


Q ss_pred             C-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC--CCcee
Q 001258          430 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ  502 (1113)
Q Consensus       430 p-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~--~~~~~  502 (1113)
                      + ..-+|++++.|++|++||+.....    +.....+.+|.+.|..++|.+-... +|++++.|+.+.|||++  +.++.
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence            9 455889999999999999985433    5556678999999999999998887 79999999999999999  56666


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +...+|.++|+|++|+|.. +..|++||.|++|.+||+++... +..+..|...|..+.|+|+..               
T Consensus       266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------  329 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------  329 (422)
T ss_pred             ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence            7888999999999999865 57999999999999999998765 457888999999999999876               


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCc------------eEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcC
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS  648 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~  648 (1113)
                           ..|++++.|+.+.+||+..-.            +...|...+|...|..+.|+|+.. .+++.+.|+.+.||...
T Consensus       330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 358889999999999986422            122355556778899999999665 56778899999999876


Q ss_pred             C
Q 001258          649 D  649 (1113)
Q Consensus       649 ~  649 (1113)
                      .
T Consensus       405 ~  405 (422)
T KOG0264|consen  405 E  405 (422)
T ss_pred             c
Confidence            4

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.4e-24  Score=208.43  Aligned_cols=288  Identities=14%  Similarity=0.194  Sum_probs=226.1

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....|.++.|+++|..+++++.|..+++||...+.+                      +.. +.  .+...+..++|...
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----------------------~~t-i~--skkyG~~~~~Fth~   67 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----------------------VKT-IN--SKKYGVDLACFTHH   67 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----------------------eeE-ee--cccccccEEEEecC
Confidence            467899999999999999999999999998764332                      111 11  14556788888877


Q ss_pred             CCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE
Q 001258          830 DSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  906 (1113)
Q Consensus       830 ~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  906 (1113)
                      ...++.++   |.+||..++.+.+.++.|.+|...|++++.+| .+..+++++.|++|++||++..++...+.....  .
T Consensus        68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--p  144 (311)
T KOG1446|consen   68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--P  144 (311)
T ss_pred             CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCC--c
Confidence            76666665   78999999999999999999999999999999 678999999999999999998887766654333  3


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  985 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~  985 (1113)
                      .++|.|+|-++|.+.....|++||++..............+   .......+.|||||+++..+ ..+.+.+.|.-+|..
T Consensus       145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~  221 (311)
T KOG1446|consen  145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV  221 (311)
T ss_pred             ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE
Confidence            57899999999999888899999998864433222222222   12467899999999999985 677899999999998


Q ss_pred             eeccccCCCCC-CeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC-cccCccceEEEEeCCCCCEEE
Q 001258          986 VKQWVPRESSA-PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG-VSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       986 ~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g-h~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      ...+....... --...+|+||++++++|+.||+|.+|++++++.+..+.       + +.+.+.  ++.|.|   .+..
T Consensus       222 ~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~-------~~~~~~~~--~~~fnP---~~~m  289 (311)
T KOG1446|consen  222 KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLR-------GPNGGPVS--CVRFNP---RYAM  289 (311)
T ss_pred             eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEec-------CCCCCCcc--ccccCC---ceee
Confidence            88877433322 23678999999999999999999999999999999887       4 445555  366877   3444


Q ss_pred             EEeCCCcEEEEeccCCC
Q 001258         1064 LGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1064 s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      -++.+..+-+|-....+
T Consensus       290 f~sa~s~l~fw~p~~~~  306 (311)
T KOG1446|consen  290 FVSASSNLVFWLPDEDA  306 (311)
T ss_pred             eeecCceEEEEeccccc
Confidence            44557889999877655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.1e-25  Score=237.49  Aligned_cols=241  Identities=17%  Similarity=0.302  Sum_probs=205.9

Q ss_pred             eeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE-EEE
Q 001258          351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIW  428 (1113)
Q Consensus       351 ~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~  428 (1113)
                      +.+.+. |.+.|..+++.+..  .+++|+.||++++|+-..++-+..                 +.+.+|.+.|.+ +++
T Consensus         6 ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y   66 (745)
T KOG0301|consen    6 LSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICY   66 (745)
T ss_pred             eEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccc-----------------eecccCcceeecccee
Confidence            445555 99999999988887  488999999999999765554432                 246778888888 888


Q ss_pred             cC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258          429 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       429 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  507 (1113)
                      -+ ++-+|++|+.|.+|.+|.+.+...+.   +|.+|...|+++....++.   ++|||.|.++++|-  .+++...+.+
T Consensus        67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~g  138 (745)
T KOG0301|consen   67 AESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQG  138 (745)
T ss_pred             ccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCC
Confidence            76 66679999999999999999988665   8999999999999888876   89999999999995  4677788999


Q ss_pred             cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      |...|+++...+.   +.++||+.|++|++|.-  ++...++.+|...|..+++-+++.                     
T Consensus       139 H~asVWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~---------------------  192 (745)
T KOG0301|consen  139 HTASVWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH---------------------  192 (745)
T ss_pred             cchheeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC---------------------
Confidence            9999999986544   38999999999999965  567888999999999999999876                     


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                       +++++.||.|++|++ +|+++..+.+|  ...|.+++...++..+++++.|++++||+..
T Consensus       193 -flScsNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  193 -FLSCSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             -eEeecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence             999999999999999 77887777555  6679999988889999999999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=4.9e-26  Score=224.83  Aligned_cols=284  Identities=17%  Similarity=0.223  Sum_probs=216.8

Q ss_pred             ccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          416 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      |.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.   ++..|.+.|..|++.. +   .+++++.|++|+.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW  134 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence            68999999999999987 889999999999999999988776   7999999999999987 3   48999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      -+.- .+++++.+. ..+..+.-+.  .++.++|+|.+  |.|||.....++..+.-....+.++.|+|-..        
T Consensus       135 k~~~-~p~~tilg~-s~~~gIdh~~--~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------  200 (433)
T KOG0268|consen  135 KIDG-PPLHTILGK-SVYLGIDHHR--KNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------  200 (433)
T ss_pred             eccC-Ccceeeecc-cccccccccc--ccccccccCce--eeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence            9764 467777643 3445554322  23578888754  89999987777666665555666666666544        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                  +.|++++.|+.|.+||++++.++..+...-   .-+.++|+|.+-.+++|+.|..++.+|+......+
T Consensus       201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  201 ------------SILASCASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             ------------hheeeeccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccc
Confidence                        246777799999999999999888775443   34789999988889999999999999876542222


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ....                                                                            
T Consensus       266 ~v~~----------------------------------------------------------------------------  269 (433)
T KOG0268|consen  266 NVHK----------------------------------------------------------------------------  269 (433)
T ss_pred             hhhc----------------------------------------------------------------------------
Confidence            1111                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                      
T Consensus       270 --------------------------------------------------------------------------------  269 (433)
T KOG0268|consen  270 --------------------------------------------------------------------------------  269 (433)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                       +|.+.|.++.|||.|+-+++|+ |.+|+||....+...-.+. ..-..|.|+.||. |.+++++|++|+.|++|.....
T Consensus       270 -dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~As  347 (433)
T KOG0268|consen  270 -DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKAS  347 (433)
T ss_pred             -ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeeeecchh
Confidence             1556667777777777777777 7788888776554332221 1234699999999 9999999999999999987654


Q ss_pred             e
Q 001258          893 E  893 (1113)
Q Consensus       893 ~  893 (1113)
                      +
T Consensus       348 e  348 (433)
T KOG0268|consen  348 E  348 (433)
T ss_pred             h
Confidence            3

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.3e-25  Score=236.43  Aligned_cols=275  Identities=19%  Similarity=0.262  Sum_probs=227.9

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1113)
                      +=+.||..+  +||+|. ...|.+|+..+++....                   ...+...|+++.|+++|.+||+|..+
T Consensus       181 nlldWss~n--~laVal-g~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~  238 (484)
T KOG0305|consen  181 NLLDWSSAN--VLAVAL-GQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD  238 (484)
T ss_pred             hHhhcccCC--eEEEEe-cceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence            446788555  477764 55899999999885542                   23337899999999999999999999


Q ss_pred             CeEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE-eeccCcCEEEEeeee
Q 001258          442 HIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHH  519 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~~~~~  519 (1113)
                      |.|.|||..+.+.++   ++.+ |...|-+++|.  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|++
T Consensus       239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~  311 (484)
T KOG0305|consen  239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP  311 (484)
T ss_pred             CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence            999999999887666   6777 99999999998  34  689999999999999998776655 889999999999875


Q ss_pred             cCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe--cCCc
Q 001258          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFS  597 (1113)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~  597 (1113)
                        ++.++++|+.|+.+.|||.........+..|...|..++|+|-..                    +.||+|+  .|+.
T Consensus       312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~  369 (484)
T KOG0305|consen  312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRC  369 (484)
T ss_pred             --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccE
Confidence              458999999999999999988889999999999999999998654                    3477754  7999


Q ss_pred             EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE--ECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258          598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  675 (1113)
Q Consensus       598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1113)
                      |++||..+++.+..+...   ..|.++.|++..+-|+++  ..++.|.||+..+. ..+..+                  
T Consensus       370 i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l------------------  427 (484)
T KOG0305|consen  370 IKFWNTNTGARIDSVDTG---SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL------------------  427 (484)
T ss_pred             EEEEEcCCCcEecccccC---CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee------------------
Confidence            999999999999888654   359999999988766664  44667888887653 222222                  


Q ss_pred             ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258          676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  755 (1113)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~  755 (1113)
                                                                                              .+|..+|.
T Consensus       428 ------------------------------------------------------------------------~gH~~RVl  435 (484)
T KOG0305|consen  428 ------------------------------------------------------------------------LGHTSRVL  435 (484)
T ss_pred             ------------------------------------------------------------------------cCCcceeE
Confidence                                                                                    23788899


Q ss_pred             EEEEeCCCceEEEeecCCeEEEEEcc
Q 001258          756 RLIFTNSGNAILALASNAIHLLWKWQ  781 (1113)
Q Consensus       756 ~~~~s~~~~~l~~~~~dg~i~vw~~~  781 (1113)
                      .++++|||..+++++.|.++++|++-
T Consensus       436 ~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  436 YLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEEECCCCCEEEEecccCcEEecccc
Confidence            99999999999999999999999854

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.8e-24  Score=242.95  Aligned_cols=264  Identities=16%  Similarity=0.200  Sum_probs=200.7

Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-C
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N  829 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~  829 (1113)
                      -..|.....++++..+++++.+.....|+...+.            ..++....|+.......-.+|...|.+++|+| +
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence            3445556677787778888888888888754221            11333334443321111124999999999999 8


Q ss_pred             CCEEEEEe-CCeEEEEECCCC-------ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258          830 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  901 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h  901 (1113)
                      +++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            89999998 999999999764       3467789999999999999954579999999999999999999999999999


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E----cCCeEE
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA  976 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~----~d~~v~  976 (1113)
                      .+.|++++|+|+|.+|++++.|++|++||+.+++..     ....+|..  .....+.|.+++..+++ +    .|+.|+
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-----~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-----SSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-----EEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            999999999999999999999999999999986532     22233322  23456788998887776 3    378999


Q ss_pred             EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeec
Q 001258          977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +||+++...........+...+....|++|+.+|++++ .|+.|++||+.+++.+...
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~  298 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS  298 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence            99998765332222112345566778999999999887 5999999999998877654

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=6e-24  Score=195.86  Aligned_cols=308  Identities=14%  Similarity=0.137  Sum_probs=228.2

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....|.+++|+|.|...++++...+.+|.....-.....+...+.        ....++..  ....|.+.|+|.+|+|+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~--------~pp~v~~k--r~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAK--------QPPSVLCK--RNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCccccccccc--------CCCeEEee--eccccCccEEEEEecCc
Confidence            567899999999999999999999999976542111000000000        00011111  11238899999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCce-----eeeecCCCCCeeEEEEecC---CCcEEEEEe-cCCcEEEEEcccceeeeeec
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      |+++++|+ |.+|++.......+     -..+.-|.+.|..++|-.+   ++.+|++++ .|..|++-|...|+..+.+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999 88999876653322     2457779999999999642   456788765 57788898999999999999


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEE
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF  978 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~  978 (1113)
                      +|.+.|.++- +-+|-.+++|+.|.+|++||+.-..+....-.... +.......|..++..|.|++|+++ .|....+|
T Consensus       181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~-~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH-DGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCccc-CCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            9999998873 34688999999999999999987554332211111 111122578999999999999997 78889999


Q ss_pred             eCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCC
Q 001258          979 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus       979 d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
                      |++.+..++.+.  .|...|.|+.|||.-.|+++++.|..|++-|+.. .+...+.  ......|...+  |.+.|+|+|
T Consensus       259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqg-dla~el~--~~vv~ehkdk~--i~~rwh~~d  331 (350)
T KOG0641|consen  259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG-DLAHELP--IMVVAEHKDKA--IQCRWHPQD  331 (350)
T ss_pred             EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeeccc-chhhcCc--eEEEEeccCce--EEEEecCcc
Confidence            999999999987  7899999999999999999999999999999863 3333222  11112444443  459999965


Q ss_pred             CCEEEEEeCCCcEEEEecc
Q 001258         1059 PNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1059 ~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                       --+++.+.|.++-+|-+.
T Consensus       332 -~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  332 -FSFISSSADKTATLWALN  349 (350)
T ss_pred             -ceeeeccCcceEEEeccC
Confidence             467888999999999764

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.6e-24  Score=219.14  Aligned_cols=282  Identities=17%  Similarity=0.274  Sum_probs=229.3

Q ss_pred             CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccc
Q 001258          619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  698 (1113)
Q Consensus       619 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1113)
                      ..+.++...|....+.+|+.|..+.++|...+ +.+..+.|                                       
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~-q~l~~~~G---------------------------------------  259 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN-QILATLKG---------------------------------------  259 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchh-hhhhhccC---------------------------------------
Confidence            35677777777788999999999999998777 55555543                                       


Q ss_pred             cccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEE
Q 001258          699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  778 (1113)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  778 (1113)
                                                                         |...|+.+.++|+...+++++.|..|+||
T Consensus       260 ---------------------------------------------------h~kki~~v~~~~~~~~v~~aSad~~i~vw  288 (506)
T KOG0289|consen  260 ---------------------------------------------------HTKKITSVKFHKDLDTVITASADEIIRVW  288 (506)
T ss_pred             ---------------------------------------------------cceEEEEEEeccchhheeecCCcceEEee
Confidence                                                               56678899999999999999999999999


Q ss_pred             EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC
Q 001258          779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  857 (1113)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~  857 (1113)
                      .......                   ...    .  ..|..+|+.+...|.|.||++++ |+++.+.|+.++.++.....
T Consensus       289 s~~~~s~-------------------~~~----~--~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~  343 (506)
T KOG0289|consen  289 SVPLSSE-------------------PTS----S--RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD  343 (506)
T ss_pred             ccccccC-------------------ccc----c--ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee
Confidence            8653211                   001    1  13899999999999999999999 89999999999998877653


Q ss_pred             --CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258          858 --PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  935 (1113)
Q Consensus       858 --~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~  935 (1113)
                        ..-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|.+++|+.+|-+||+++.|+.|++||++..+
T Consensus       344 ~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~  422 (506)
T KOG0289|consen  344 ETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK  422 (506)
T ss_pred             ccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc
Confidence              234589999999 99999999999999999999999999999999999999999999999999999999999998854


Q ss_pred             cccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258          936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      ..+...+.  ..     ..+..+.|.+.|++|+++ .+=+|++++-.+.+.........|.+..+++.|..+.+++++++
T Consensus       423 n~kt~~l~--~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~s  495 (506)
T KOG0289|consen  423 NFKTIQLD--EK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTS  495 (506)
T ss_pred             ccceeecc--cc-----ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeecc
Confidence            32222111  11     257899999999999994 66667777755544433333347788999999999999999999


Q ss_pred             CCCcEEEEec
Q 001258         1015 LDATVCVFSA 1024 (1113)
Q Consensus      1015 ~Dg~v~vwd~ 1024 (1113)
                      .|..++++.+
T Consensus       496 md~~l~~~a~  505 (506)
T KOG0289|consen  496 MDAILRLYAL  505 (506)
T ss_pred             chhheEEeec
Confidence            9999888764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=3.4e-26  Score=225.93  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=199.1

Q ss_pred             CCCCcceeEe-ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258          345 EDLPKTVTRT-LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1113)
Q Consensus       345 ~~~~~~~~~~-~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  423 (1113)
                      .-+.+..... -+|.+.|.|++=+|..--.+|+|+.||.|+|||+...+++.                   .+..|.+.|
T Consensus        52 R~fakPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V  112 (433)
T KOG0268|consen   52 RVFAKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLV  112 (433)
T ss_pred             HHhhccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCce
Confidence            3334444344 45999999999999984469999999999999999887766                   488999999


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      ..+++..  ..+++++.|.+|+.|.+... .++   ++.+ ...+..|.-...+.  .++|||.  .|.|||.....++.
T Consensus       113 ~Gi~v~~--~~~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~  181 (433)
T KOG0268|consen  113 RGICVTQ--TSFFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVS  181 (433)
T ss_pred             eeEEecc--cceEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccc
Confidence            9999986  77889999999999998863 232   4433 34566777666666  6899986  58999999999999


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      .+.-....|.++.|+|... ..|++++.|+.|.+||++...++..+.... .-..                     ++|+
T Consensus       182 smswG~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~~m-RTN~---------------------Iswn  238 (433)
T KOG0268|consen  182 SMSWGADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVILTM-RTNT---------------------ICWN  238 (433)
T ss_pred             eeecCCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeeeec-cccc---------------------eecC
Confidence            9988889999999988765 689999999999999999877765433211 1233                     4555


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      |..-.++++++|..++.||++... ++.....|  ...|.++.|||.|+-+++|+.|.+|+||....+
T Consensus       239 PeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dh--vsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  239 PEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDH--VSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             ccccceeeccccccceehhhhhhcccchhhccc--ceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            544468889999999999998743 45555544  568999999999999999999999999987665

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8e-25  Score=211.73  Aligned_cols=251  Identities=17%  Similarity=0.330  Sum_probs=214.3

Q ss_pred             eeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       351 ~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      +.+.+ +|++.||.++.-.... ++.+++.|.+-+||.+++|.++.                   .+.||.+.|++++|+
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~-------------------~Y~GH~GSVNsikfh  199 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLA-------------------TYTGHTGSVNSIKFH  199 (481)
T ss_pred             ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeecccccee-------------------eecccccceeeEEec
Confidence            33444 5999999999988777 79999999999999999999987                   478999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEc------cC------------------------------C-ceeeeeeeeecccCCeeEEE
Q 001258          430 PDGSLFGVAYSRHIVQIYSY------HG------------------------------G-DEVRQHLEIDAHVGGVNDIA  472 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~------~~------------------------------~-~~~~~~~~l~~h~~~V~~v~  472 (1113)
                      +.+.++++++.|++..||..      ..                              + ..-.++..|.+|.+.|.+..
T Consensus       200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d  279 (481)
T KOG0300|consen  200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD  279 (481)
T ss_pred             cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence            99999999999999999972      11                              0 00123456889999999999


Q ss_pred             EcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeC
Q 001258          473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEA  551 (1113)
Q Consensus       473 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  551 (1113)
                      |...|+  -+++++.|.+..+||+++|..+..+.||....+.++-+|..  .++++.+.|.+.++||++.. ..+..+.+
T Consensus       280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQ--rLVvTsSrDtTFRLWDFReaI~sV~VFQG  355 (481)
T KOG0300|consen  280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQ--RLVVTSSRDTTFRLWDFREAIQSVAVFQG  355 (481)
T ss_pred             hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCcc--eEEEEeccCceeEeccchhhcceeeeecc
Confidence            999999  59999999999999999999999999999999998877655  78999999999999999843 23447888


Q ss_pred             CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCC
Q 001258          552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG  630 (1113)
Q Consensus       552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~  630 (1113)
                      |...|++..|..+.+                      +++|+.|.+|++||+++.+ ++.++...   ..++.++.+..+
T Consensus       356 HtdtVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtd---S~~NRvavs~g~  410 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTD---SPANRVAVSKGH  410 (481)
T ss_pred             cccceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecC---CccceeEeecCC
Confidence            888999999888876                      9999999999999998754 56666544   358889999989


Q ss_pred             CEEEEEECCCcEEEEEcCCC
Q 001258          631 CLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       631 ~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .+++.-..+..|++||+...
T Consensus       411 ~iIAiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  411 PIIAIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             ceEEeccCCceEEEEecCCC
Confidence            99999999999999998654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=2.8e-24  Score=207.73  Aligned_cols=207  Identities=18%  Similarity=0.208  Sum_probs=161.3

Q ss_pred             ccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          416 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       416 ~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      -....+.|.+++||| ...+++.+|.|++||+|+++....+.. +....|.++|.+++|+.||.  .+++|+.|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            345677999999999 556666889999999999987422222 34667999999999999998  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |+.+++ +..+..|.++|.++.|....+-..|+||+-|++|++||.+...++.++..++. +.++.              
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D--------------  163 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD--------------  163 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence            999995 56677799999999998777667899999999999999998877777665543 22211              


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                               -....++++..+..|.+|+++++..........-.-.++|++..+|....+.|+-+|.+.|..+..+
T Consensus       164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence                     1123578888999999999977654332211111235789999998888899999999998877664

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=6.2e-24  Score=240.33  Aligned_cols=235  Identities=14%  Similarity=0.196  Sum_probs=180.4

Q ss_pred             EecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCce-
Q 001258          377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE-  454 (1113)
Q Consensus       377 gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~-  454 (1113)
                      |+.++.|.+|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            4456777777765543332                   47899999999999996 89999999999999999986432 


Q ss_pred             e----eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe
Q 001258          455 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  530 (1113)
Q Consensus       455 ~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  530 (1113)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+.+++.+..+. |...|.+++|++  +|.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence            1    123357899999999999999875 56899999999999999999887776 667899999875  557999999


Q ss_pred             cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC----cEEEEECCC-
Q 001258          531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS-  605 (1113)
Q Consensus       531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-  605 (1113)
                      .|+.|++||++++.....+..|.+.+....                +....|++++.++++++.++    .|++||++. 
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            999999999998877777766665443322                12234556677888887664    799999985 


Q ss_pred             CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       606 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++++..+..+.....+......+++.++++|..|+.|++|++..+
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            566766655544333333344557899999999999999999765

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=1.7e-24  Score=221.24  Aligned_cols=293  Identities=16%  Similarity=0.190  Sum_probs=224.7

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeee--------------eee-ecccCCeeEEEEcCCCCe
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ  479 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~~~~~  479 (1113)
                      ....|.-+|.+|+++||+++..+++.|++|.=|++.+++..+.+              ..- ++|...|.+++.|+||+ 
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            45678999999999999999999999999999999988743111              011 37899999999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                       ||++|+.|..|.||+.++.+.++.+.+|.+.|.+++|-...  ..+++++.|+.|++|+++......++-+|...|..+
T Consensus       216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence             89999999999999999999999999999999999986554  579999999999999999888888888888888888


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  639 (1113)
                      ....-++                     .+-+|+.|+++++|++.... ...+.++  ...+-|++|-.+ ..+++|+.+
T Consensus       293 daL~reR---------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSdn  347 (479)
T KOG0299|consen  293 DALSRER---------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSDN  347 (479)
T ss_pred             chhcccc---------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccCC
Confidence            7666555                     24445699999999995433 2333333  335778888754 578999999


Q ss_pred             CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  719 (1113)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  719 (1113)
                      |.|.+|++...+.+...-..|.....                                                      
T Consensus       348 G~IaLWs~~KKkplf~~~~AHgv~~~------------------------------------------------------  373 (479)
T KOG0299|consen  348 GSIALWSLLKKKPLFTSRLAHGVIPE------------------------------------------------------  373 (479)
T ss_pred             ceEEEeeecccCceeEeeccccccCC------------------------------------------------------
Confidence            99999999877433322222211000                                                      


Q ss_pred             ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCee
Q 001258          720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL  799 (1113)
Q Consensus       720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~l  799 (1113)
                                          .     ....+...|++++..|....+++++.+|.+++|.+..+-..             
T Consensus       374 --------------------~-----~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~-------------  415 (479)
T KOG0299|consen  374 --------------------L-----DPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA-------------  415 (479)
T ss_pred             --------------------c-----cccccccceeeeEecccCceEEecCCCCceEEEEecCCccc-------------
Confidence                                0     00013358999999999999999999999999987643210             


Q ss_pred             cCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258          800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  837 (1113)
Q Consensus       800 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  837 (1113)
                               ...+......+.|.+++|+++|+++++|-
T Consensus       416 ---------i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  416 ---------INLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ---------cceeeecccccEEEEEEEccCCCEEEEec
Confidence                     00011112567899999999999888875

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.5e-24  Score=207.21  Aligned_cols=298  Identities=15%  Similarity=0.195  Sum_probs=202.7

Q ss_pred             ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc-----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258          414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  488 (1113)
Q Consensus       414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  488 (1113)
                      ..|++|.+.|++++||.||++||+++.|++|+||+++.-.     +++...    .-+--+.++|+||-+. +++++-..
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g  154 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRG  154 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccC
Confidence            3699999999999999999999999999999999998632     122111    1234688999999886 56677777


Q ss_pred             CcEEEEeCCC---CceeeE--------e-eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCce
Q 001258          489 KTIKVWDATN---GAKQYI--------F-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC  556 (1113)
Q Consensus       489 ~~i~iwd~~~---~~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  556 (1113)
                      .++++|.+..   |.....        | +.|...|..+-  ...++.+|++++.|..|.+|+++ ++.+..+......-
T Consensus       155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iG--iA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIG--IAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN  231 (420)
T ss_pred             CEEEEEEeeecccCCCCcccccccccccchhcccceEEEe--ecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence            8899998753   222111        1 23455555554  34667899999999999999998 55555555444444


Q ss_pred             EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC---Cc---eEEEEccCCCCCCcCeEEECCCC
Q 001258          557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ---LLTSIDADGGLPASPRIRFNKDG  630 (1113)
Q Consensus       557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~---~~~~~~~~~~~~~v~~~~~s~~~  630 (1113)
                      ...+.||+|                     +++++++-.-.|++|.+--   |.   ....+...+|...|..++|+++.
T Consensus       232 ~~aavSP~G---------------------RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S  290 (420)
T KOG2096|consen  232 YDAAVSPDG---------------------RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS  290 (420)
T ss_pred             cceeeCCCC---------------------cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc
Confidence            444455555                     5788888888999998632   21   23344455667789999999999


Q ss_pred             CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccc
Q 001258          631 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  710 (1113)
Q Consensus       631 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1113)
                      +.+++.+.||++++||+.-..+.     +...                                                
T Consensus       291 ~r~vtvSkDG~wriwdtdVrY~~-----~qDp------------------------------------------------  317 (420)
T KOG2096|consen  291 TRAVTVSKDGKWRIWDTDVRYEA-----GQDP------------------------------------------------  317 (420)
T ss_pred             ceeEEEecCCcEEEeeccceEec-----CCCc------------------------------------------------
Confidence            99999999999999997432100     0000                                                


Q ss_pred             cCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCc
Q 001258          711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  790 (1113)
Q Consensus       711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  790 (1113)
                          ..                       ++....+.......-..+.++|+|+.|+++. ...+.++..+         
T Consensus       318 ----k~-----------------------Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se---------  360 (420)
T KOG2096|consen  318 ----KI-----------------------LKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASE---------  360 (420)
T ss_pred             ----hH-----------------------hhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcc---------
Confidence                00                       0000000011122233789999999665544 4466666544         


Q ss_pred             eeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEE
Q 001258          791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  845 (1113)
Q Consensus       791 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd  845 (1113)
                                   +|......-.  .|...|.+++|+++|+++++++|..++++.
T Consensus       361 -------------~g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~  400 (420)
T KOG2096|consen  361 -------------DGKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR  400 (420)
T ss_pred             -------------cCccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence                         3332222122  289999999999999999999999999987

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=6.4e-24  Score=214.83  Aligned_cols=282  Identities=20%  Similarity=0.278  Sum_probs=232.8

Q ss_pred             CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC
Q 001258          466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  545 (1113)
Q Consensus       466 ~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  545 (1113)
                      ..+.++...+...  .+.+|+.|.++.++|..+++.+.+++||...|+.+.+++..  ..+++++.|..|++|.......
T Consensus       220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence            3577788877744  69999999999999999999999999999999999988766  5899999999999999887776


Q ss_pred             eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258          546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  625 (1113)
Q Consensus       546 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  625 (1113)
                      ......|..+|+.+...|.|.                     ||++++.|+...+.|+.++..+.........-.+++.+
T Consensus       296 ~~~~~~h~~~V~~ls~h~tge---------------------YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGLSLHPTGE---------------------YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ccccccccccceeeeeccCCc---------------------EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            666677777676666665555                     89999999999999999999988877653345688999


Q ss_pred             ECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCC
Q 001258          626 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  705 (1113)
Q Consensus       626 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1113)
                      |+|||.++.+|..|+.++|||+.++. ....                                                 
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------  384 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------  384 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence            99999999999999999999987651 1100                                                 


Q ss_pred             CCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc
Q 001258          706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  785 (1113)
Q Consensus       706 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~  785 (1113)
                                                                                                      
T Consensus       385 --------------------------------------------------------------------------------  384 (506)
T KOG0289|consen  385 --------------------------------------------------------------------------------  384 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCee
Q 001258          786 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT  863 (1113)
Q Consensus       786 ~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~  863 (1113)
                                                +.  +|.++|.+++|+.||-|||++. |+.|++||++..+...++.... ..+.
T Consensus       385 --------------------------Fp--ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  385 --------------------------FP--GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             --------------------------CC--CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence                                      11  2778888888888888888888 6779999998777776665332 3699


Q ss_pred             EEEEecCCCcEEEEEecCCcEEEEEcc--cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          864 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       864 ~l~~s~~d~~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      ++.|.+ .|++|++++.|=.|++++-.  ++.++..+..|++..+++.|..+.++|+++|.|..++++.+
T Consensus       437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999999 89999999887666666532  57888899999999999999999999999999999988764

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2e-23  Score=236.32  Aligned_cols=243  Identities=14%  Similarity=0.188  Sum_probs=176.8

Q ss_pred             eeEeccCCCCcEEEEEcCC-CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          351 VTRTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spd-g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      +....+|.+.|++++|+|+ +. +||+|+.||+|+|||+.++.....           ........+.+|...|.+++|+
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~-lLASgS~DgtIrIWDi~t~~~~~~-----------~i~~p~~~L~gH~~~V~sVaf~  134 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSE-ILASGSEDLTIRVWEIPHNDESVK-----------EIKDPQCILKGHKKKISIIDWN  134 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCC-EEEEEeCCCeEEEEECCCCCcccc-----------ccccceEEeecCCCcEEEEEEC
Confidence            3344569999999999998 55 699999999999999986532110           0000111467899999999999


Q ss_pred             CCCCeE-EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          430 PDGSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       430 pdg~~l-as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                      |++..+ ++++.|++|+|||+.+++...   .+. |...|.+++|+|+|.  +|++++.|+.|+|||+++++.+..+.+|
T Consensus       135 P~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        135 PMNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             CCCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEecc
Confidence            998864 789999999999999987554   343 567899999999999  7899999999999999999999999999


Q ss_pred             CcCEEEEeeee---cCCceEEEEEecCC----cEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          509 EAPVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       509 ~~~v~~~~~~~---~~~~~~l~s~~~dg----~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      .+.+.+.++..   .+++.+|++++.|+    .|++||++.... +........ ..                  .+...
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~------------------~L~p~  269 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SA------------------PLIPH  269 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-cc------------------ceEEe
Confidence            98765544322   24567888888774    799999986332 222211111 00                  11111


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  631 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  631 (1113)
                      ...+++.++++|+.|+.|++|++..+. +..+.......++.+++|.|+..
T Consensus       270 ~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr~  319 (568)
T PTZ00420        270 YDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQI  319 (568)
T ss_pred             eeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEccccc
Confidence            113345678899999999999998764 44444444456778999999653

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.7e-24  Score=205.87  Aligned_cols=201  Identities=14%  Similarity=0.255  Sum_probs=169.8

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-ee
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EV  894 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~  894 (1113)
                      |...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|....+.++-+| ..+++++.+.|.+.++||+... ..
T Consensus       271 H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~s  349 (481)
T KOG0300|consen  271 HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQS  349 (481)
T ss_pred             cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcce
Confidence            888999999999999999999 99999999999999999999999999999999 8999999999999999999853 45


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  973 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~  973 (1113)
                      +..|+||.+.|+++.|.-| ..+++++.|.+|++||+.+....   ...+..     ..++..++.+..+..++.- .++
T Consensus       350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp---lATIRt-----dS~~NRvavs~g~~iIAiPhDNR  420 (481)
T KOG0300|consen  350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP---LATIRT-----DSPANRVAVSKGHPIIAIPHDNR  420 (481)
T ss_pred             eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc---ceeeec-----CCccceeEeecCCceEEeccCCc
Confidence            6889999999999999866 57899999999999999884321   111111     1468899999999999994 678


Q ss_pred             eEEEEeCCccceeecc--ccCCCCCCeeEEEECCCCC--EEEEEeCCCcEEEEecCCC
Q 001258          974 QLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      +|++||+......+..  ...+|...|+|.+|..+.-  -|++++.|..+.=|.+.+-
T Consensus       421 qvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  421 QVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             eEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            9999999866554443  3358999999999987643  4889999999999998653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.3e-24  Score=200.77  Aligned_cols=256  Identities=18%  Similarity=0.231  Sum_probs=205.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~  434 (1113)
                      |.+-|-.+...--|++ |||++.|++|+|+.+..+....                ....|.||.++|+.++|..  -|.+
T Consensus        10 H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~i   72 (299)
T KOG1332|consen   10 HEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGTI   72 (299)
T ss_pred             hhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCcE
Confidence            8899999998889996 9999999999999998765311                1125899999999999987  8999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-c--eeeEeeccCcC
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEAP  511 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~--~~~~~~~h~~~  511 (1113)
                      ||+++.||.|.||.-.+|+ ..+......|...|++|+|.|.+-.+.|+.++.||.|.|.+.++. .  ..+....|.-.
T Consensus        73 LAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G  151 (299)
T KOG1332|consen   73 LASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG  151 (299)
T ss_pred             eeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc
Confidence            9999999999999999884 545557789999999999999988889999999999999988754 2  22345679999


Q ss_pred             EEEEeeeecCC-c-----------eEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          512 VYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       512 v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      |++++|.|..- |           ..|++|+.|..|++|+..+..-  ...+..|...|..++|.|.-..          
T Consensus       152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl----------  221 (299)
T KOG1332|consen  152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL----------  221 (299)
T ss_pred             cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC----------
Confidence            99999987621 1           4699999999999999987532  2357889999999999986421          


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCC--ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                             ...++++++.||++.||..+..  ....++. +.-...+..++||..|++|++++.|+.+.+|.-.
T Consensus       222 -------~~s~iAS~SqDg~viIwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 -------PKSTIASCSQDGTVIIWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             -------CceeeEEecCCCcEEEEEecCccCccccccc-ccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                   1135999999999999987632  1111221 1223468899999999999999999999999644

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.1e-24  Score=199.00  Aligned_cols=222  Identities=20%  Similarity=0.278  Sum_probs=180.1

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~  492 (1113)
                      +...|.+.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|+.++|..  .|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            4678999999998888999999999999999999998876667779999999999999987  677  899999999999


Q ss_pred             EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccC---
Q 001258          493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSAD---  564 (1113)
Q Consensus       493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~---  564 (1113)
                      ||.-++|+  ..+.+..|...|++++|.|..-|-.|++++.||.|.+.+.+....   ......|.-.|++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99987774  345677899999999999999999999999999999999887522   2244567778899999886   


Q ss_pred             CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC----CEEEEEECCC
Q 001258          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN  640 (1113)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg  640 (1113)
                      |..+-.+...          .-..|++|+.|+.|+||+..+++-+..-...+|...|+.++|.|.-    .+|++++.||
T Consensus       164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            3211111100          0135999999999999999887544333334557789999999953    5899999999


Q ss_pred             cEEEEEcC
Q 001258          641 GIKILATS  648 (1113)
Q Consensus       641 ~i~iwd~~  648 (1113)
                      ++.||...
T Consensus       234 ~viIwt~~  241 (299)
T KOG1332|consen  234 TVIIWTKD  241 (299)
T ss_pred             cEEEEEec
Confidence            99999754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.3e-21  Score=216.88  Aligned_cols=518  Identities=15%  Similarity=0.195  Sum_probs=320.5

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCe-eEEEEecCCCcEEEEeCCCCceee
Q 001258          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      .-.||+|+++++... +..|.||...+++++.   .+.+|..++..+.+.|.... .++++++.||.|++||...+..++
T Consensus        21 ~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk   96 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCT-GNFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK   96 (792)
T ss_pred             ccccccCCcEEEEee-CCEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence            357899999998876 4569999999999887   78999999999999987663 478899999999999999999999


Q ss_pred             EeeccCcCEEEEeeeecC-CceEEE-EEecCCcE-EEEEcCCCCCeeeeeCCCCceEEEEE-ccCCCeEEeccccCceeE
Q 001258          504 IFEGHEAPVYSVCPHHKE-NIQFIF-STALDGKI-KAWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLGV  579 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~-~~~~l~-s~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~i~~  579 (1113)
                      ++..+. ++.++.+.+.. +....+ .+..|..+ .....+......       ...-..+ +..+ .....+.  .-.+
T Consensus        97 t~~~~~-~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~-------~~~~~t~~~~~~-d~~~~~~--~~~~  165 (792)
T KOG1963|consen   97 TFDNNL-PVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSS-------RFVLATFDSAKG-DFLKEHQ--EPKS  165 (792)
T ss_pred             EEecCC-ceeEEEechhHhCccceeEeecccceeeeeccccccccee-------eeEeeeccccch-hhhhhhc--CCcc
Confidence            887543 23333221100 000111 11111111 101001000000       0000000 0000 0000000  1234


Q ss_pred             EEecCCCCEEEEEecCCcEEEEECCCCceEEEE--ccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI--DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       580 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +.+++.+.+. ....+..+.+|+...+......  ....|...+++.+++|+++++++|..||.|.+|.-...       
T Consensus       166 I~~~~~ge~~-~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------  237 (792)
T KOG1963|consen  166 IVDNNSGEFK-GIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------  237 (792)
T ss_pred             EEEcCCceEE-EEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------
Confidence            5555555544 3445667889988775511111  11123344789999999999999999999999963221       


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      ...                                                            +...++--|        
T Consensus       238 ~~~------------------------------------------------------------~~t~t~lHW--------  249 (792)
T KOG1963|consen  238 SDD------------------------------------------------------------SETCTLLHW--------  249 (792)
T ss_pred             ccc------------------------------------------------------------cccceEEEe--------
Confidence            000                                                            000122223        


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                                  |...|.+++|+++|.+|++|+..+.+.+|.+.++..                    +.    ++.  -
T Consensus       250 ------------H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------------------qf----LPR--L  291 (792)
T KOG1963|consen  250 ------------HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------------------QF----LPR--L  291 (792)
T ss_pred             ------------cccccceeEEecCCceEeecccceEEEEEeecCCCc--------------------cc----ccc--c
Confidence                        778899999999999999999999999998764321                    11    222  5


Q ss_pred             CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-----------CCCeeEEEEecCCCcEEEEEecCCcEE
Q 001258          818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSSIQ  885 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~la~g~~dg~v~  885 (1113)
                      ...|..+.+|||+.+.+... |+.|.+..+.+.....++.+.           .+-.+.++++| ..+.++..+..|.|.
T Consensus       292 gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ  370 (792)
T KOG1963|consen  292 GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQ  370 (792)
T ss_pred             CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEE
Confidence            78899999999999887776 999999988765554444322           23357788998 667778888999999


Q ss_pred             EEEcccceeeeeec-----------ccccCeEEEEEcCCCCEEEEEeC--------C--CcEEEEeCCCCcccccccccc
Q 001258          886 IYNVRVDEVKSKLK-----------GHSKRITGLAFSHALNVLVSSGA--------D--SQLCVWSSDGWEKQKNRFLQI  944 (1113)
Q Consensus       886 iwd~~~~~~~~~l~-----------~h~~~V~~l~~s~d~~~L~s~s~--------D--~~v~iwd~~~~~~~~~~~~~~  944 (1113)
                      +||+.+.+.+..+.           .+.-.+++++.+-.|.+++|.-.        |  -.+++|-.....+.......+
T Consensus       371 ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I  450 (792)
T KOG1963|consen  371 FYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI  450 (792)
T ss_pred             EEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE
Confidence            99998877665542           13345788888888999998632        2  347889876644332222222


Q ss_pred             CCCCCCCCCCCceEEEccCCc-EEEE-EcCCeEEEEeCCcccee--------eccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258          945 PTGRTPTAQSDTRVQFHQDQI-HFLV-VHETQLAIFETTKLECV--------KQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       945 ~~~~~~~~~~i~~~~~spdg~-~l~~-~~d~~v~v~d~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      ...|..  ..+..+.+++... ..++ +.|+.+++|-....+-+        +.....-|..++++++|+.||..|+. +
T Consensus       451 ~~PH~~--~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~-s  527 (792)
T KOG1963|consen  451 NNPHGN--AFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAV-S  527 (792)
T ss_pred             ecCCCc--eeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEE-e
Confidence            222322  2233334444333 5555 69999999988432211        11111236889999999999976665 4


Q ss_pred             CCCcEEEEecCC-CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccc
Q 001258         1015 LDATVCVFSAAN-LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus      1015 ~Dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1083 (1113)
                      .|++|.+||..+ .++.+....... +.++  ...   .+-.+.++  .++....+.+.+|++.+..-.|
T Consensus       528 ~~~~Itiwd~~~~~~l~~~~~~~~~-~~~~--~~~---~~~~~~~~--~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  528 FDDTITIWDYDTKNELLCTEGSRNW-PIAE--LLF---TAQTQNDG--ALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             cCCEEEEecCCChhhhhcccccccc-chHh--Hhh---hccccccc--ceeeccCceEehHhhhhhheec
Confidence            689999999998 555544432111 1111  111   11122233  3444557889999998877545

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-22  Score=197.53  Aligned_cols=247  Identities=16%  Similarity=0.268  Sum_probs=195.9

Q ss_pred             eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEE
Q 001258          457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  536 (1113)
Q Consensus       457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  536 (1113)
                      +...+..|.+.|++++.+  +.  ++|+||.|-+|+|||+.+...+..+..|.+.|+++.|.+......|++|+.||.|.
T Consensus        35 ~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   35 PLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             ccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEE
Confidence            455678999999999986  66  89999999999999999999999999999999999987766545899999999999


Q ss_pred             EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC
Q 001258          537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  616 (1113)
Q Consensus       537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  616 (1113)
                      +|+...-.....+..|.+.|+.++..|.|+                     ..++.+.|+.++.||+-.|+.-..+....
T Consensus       111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K---------------------LALsVg~D~~lr~WNLV~Gr~a~v~~L~~  169 (362)
T KOG0294|consen  111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK---------------------LALSVGGDQVLRTWNLVRGRVAFVLNLKN  169 (362)
T ss_pred             EEEcCCeEEeeeecccccccceeEecCCCc---------------------eEEEEcCCceeeeehhhcCccceeeccCC
Confidence            999998888888888888777777777666                     67789999999999999988766665443


Q ss_pred             CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccc
Q 001258          617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  696 (1113)
Q Consensus       617 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1113)
                      .   ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.                                      
T Consensus       170 ~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~--------------------------------------  206 (362)
T KOG0294|consen  170 K---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE--------------------------------------  206 (362)
T ss_pred             c---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh--------------------------------------
Confidence            2   3459999999988887764 6777766443 1111110                                      


Q ss_pred             cccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE
Q 001258          697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  776 (1113)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  776 (1113)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (362)
T KOG0294|consen  207 --------------------------------------------------------------------------------  206 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee
Q 001258          777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF  855 (1113)
Q Consensus       777 vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~  855 (1113)
                                                              ....+.|+.|. ++..|++|. |+.|.+||.++..+...+
T Consensus       207 ----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~  245 (362)
T KOG0294|consen  207 ----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF  245 (362)
T ss_pred             ----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee
Confidence                                                    11123333343 445666665 788999999998999999


Q ss_pred             cCCCCCeeEEEEe-cCCCcEEEEEecCCcEEEEEcccc
Q 001258          856 MPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       856 ~~~~~~i~~l~~s-~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      .+|..+|..+.+- ..++.+|++++.||.|+|||+...
T Consensus       246 ~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  246 LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            9999999999843 226789999999999999999865

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1e-23  Score=216.54  Aligned_cols=254  Identities=15%  Similarity=0.204  Sum_probs=196.7

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ..++|.|..-|.++.+|...++ +.||+ .|.|+|||+.......             ...+.. ...-...|+++.++|
T Consensus       412 q~~tL~HGEvVcAvtIS~~trh-VyTgG-kgcVKVWdis~pg~k~-------------PvsqLd-cl~rdnyiRSckL~p  475 (705)
T KOG0639|consen  412 QINTLAHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISQPGNKS-------------PVSQLD-CLNRDNYIRSCKLLP  475 (705)
T ss_pred             hhhhhccCcEEEEEEecCCcce-eEecC-CCeEEEeeccCCCCCC-------------cccccc-ccCcccceeeeEecC
Confidence            3567789999999999999997 88876 5889999996532110             011111 122356899999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ||+.|++|+.-.++.|||+..... +....+..-.-..++++.+||.+  +.+++..||.|.|||+.+...++.|+||.+
T Consensus       476 dgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtD  552 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTD  552 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCC
Confidence            999999999999999999987642 22223444445678899999999  788999999999999999999999999999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .+.||.++  .+|..|.+|+.|++|+.||++++......... .                     .|..+.++|.+.+++
T Consensus       553 GascIdis--~dGtklWTGGlDntvRcWDlregrqlqqhdF~-S---------------------QIfSLg~cP~~dWla  608 (705)
T KOG0639|consen  553 GASCIDIS--KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-S---------------------QIFSLGYCPTGDWLA  608 (705)
T ss_pred             CceeEEec--CCCceeecCCCccceeehhhhhhhhhhhhhhh-h---------------------hheecccCCCcccee
Confidence            99999864  56789999999999999999987665543321 2                     333444555666899


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .|-+++.+.+-.... .....+  +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus       609 vGMens~vevlh~sk-p~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  609 VGMENSNVEVLHTSK-PEKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eecccCcEEEEecCC-ccceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            999999998887643 333333  334557999999999999999999999999987655

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3.1e-23  Score=222.31  Aligned_cols=274  Identities=14%  Similarity=0.235  Sum_probs=221.4

Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccc-cccCCCCCCCCccE-EE
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA  825 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~-~~~~~~~~~~~v~~-l~  825 (1113)
                      .+|...|..+++.+.. .+++++.||++++|+-...                      ..+. ..+.  ++.+.|.. ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~----------------------~~l~~~~~~--~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK----------------------QYLETHAFE--GPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCc----------------------ccccceecc--cCcceeeccce
Confidence            4588888888876665 5899999999999975321                      1111 1111  25555555 77


Q ss_pred             Eec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258          826 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       826 ~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      +.+ ++-.+++|+ |.+|.+|...+...+..+.+|...|.|+.... ++. +++|+.|.+++||-.  +++...+.+|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            775 333577777 99999999999999999999999999999776 665 899999999999975  566777999999


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  983 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~  983 (1113)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++.+.+|..   .|+.+++-+++.++-++.||.|+.|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999988 899999999999998654       5777888875   899999999999999999999999999 78


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      +++....  +|..-|+++....++..+++++.|+++++|+..  ++...+.    +|   .-.|+.  +.+.+ +| -++
T Consensus       210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP---ttsiWs--a~~L~-Ng-DIv  274 (745)
T KOG0301|consen  210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP---TTSIWS--AKVLL-NG-DIV  274 (745)
T ss_pred             ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC---ccceEE--EEEee-CC-CEE
Confidence            8887766  899999999999999999999999999999987  5665554    22   135665  33344 34 578


Q ss_pred             EEeCCCcEEEEecc
Q 001258         1064 LGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1064 s~~~Dg~v~vW~~~ 1077 (1113)
                      +|++||.|+||...
T Consensus       275 vg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  275 VGGSDGRVRVFTVD  288 (745)
T ss_pred             EeccCceEEEEEec
Confidence            88899999999876

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-20  Score=209.18  Aligned_cols=511  Identities=13%  Similarity=0.150  Sum_probs=316.1

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC---CeEEEEe
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVAY  439 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~~  439 (1113)
                      .-.||+|++++++  ..+..|.||...||+++.                   .+.+|..++..+.+.|..   .++.+++
T Consensus        21 ~avfSnD~k~l~~--~~~~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~s   79 (792)
T KOG1963|consen   21 PAVFSNDAKFLFL--CTGNFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVCS   79 (792)
T ss_pred             ccccccCCcEEEE--eeCCEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEEe
Confidence            4569999997544  357899999999999886                   588999999999998854   4777999


Q ss_pred             CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC----CCCeeEEEEecCCCc------------EEEEeCCC--Cce
Q 001258          440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCGDDKT------------IKVWDATN--GAK  501 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s~d~~------------i~iwd~~~--~~~  501 (1113)
                      .||.|++||...+..++   ++..+ .++..+.+.|    ...  .+..+..|..            ++=..+.+  ...
T Consensus        80 l~G~I~vwd~~~~~Llk---t~~~~-~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~  153 (792)
T KOG1963|consen   80 LDGTIRVWDWSDGELLK---TFDNN-LPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK  153 (792)
T ss_pred             cCccEEEecCCCcEEEE---EEecC-CceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeeccccc
Confidence            99999999999998776   33322 2333333321    111  1111111211            11111111  001


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      ...+.+|.. -.++..++.  | .+.....+..+.+|+..... .. ...               +-..-++.-.+.+.+
T Consensus       154 ~d~~~~~~~-~~~I~~~~~--g-e~~~i~~~~~~~~~~v~~~~-~~-~~~---------------~~~~~~Htf~~t~~~  212 (792)
T KOG1963|consen  154 GDFLKEHQE-PKSIVDNNS--G-EFKGIVHMCKIHIYFVPKHT-KH-TSS---------------RDITVHHTFNITCVA  212 (792)
T ss_pred             hhhhhhhcC-CccEEEcCC--c-eEEEEEEeeeEEEEEecccc-ee-ecc---------------chhhhhhcccceeEE
Confidence            111122322 223343333  2 23334445667888776533 11 000               001111222356778


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCC--CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      ++|.+++++++..||.|.+|.--.  +.....-..|.|...|.+++|+++|.+|++|+.+|.+.+|.+.++++.+  +  
T Consensus       213 ~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L--  288 (792)
T KOG1963|consen  213 LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L--  288 (792)
T ss_pred             eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c--
Confidence            888888999999999999997433  3322222345566789999999999999999999999999998873111  1  


Q ss_pred             ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258          660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  739 (1113)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~  739 (1113)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (792)
T KOG1963|consen  289 --------------------------------------------------------------------------------  288 (792)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258          740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  819 (1113)
Q Consensus       740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~  819 (1113)
                            |.  -...|..+.++||+...+....|+.|.+-....-+...        .+.-..+.+...      ......
T Consensus       289 ------PR--Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tIsgi~~~~~~~------k~~~~~  346 (792)
T KOG1963|consen  289 ------PR--LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TISGIKPPTPST------KTRPQS  346 (792)
T ss_pred             ------cc--cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hccCccCCCccc------cccccc
Confidence                  00  34678999999999999999999999887654211100        000000000000      001345


Q ss_pred             CccEEEEecCCCEEE-EEeCCeEEEEECCCCceeeeec-----CC------CCCeeEEEEecCCCcEEEEEe--------
Q 001258          820 AVPCFALSKNDSYVM-SASGGKISLFNMMTFKTMATFM-----PP------PPAATFLAFHPQDNNIIAIGM--------  879 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~-~~sdg~i~vwd~~~~~~~~~~~-----~~------~~~i~~l~~s~~d~~~la~g~--------  879 (1113)
                      -.+.++++|.-+.++ -|..|.|.+||+-+-+.+..+.     .+      .-.+++++.+. .|.+++++-        
T Consensus       347 l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~~  425 (792)
T KOG1963|consen  347 LTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFNF  425 (792)
T ss_pred             cceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhhc
Confidence            567788999444444 4448999999998766654432     11      22477888888 688998864        


Q ss_pred             cCC--cEEEEEcccc----eeee-eecccccCeEEEEEcCC-C-CEEEEEeCCCcEEEEeCCCCccc-----cccccccC
Q 001258          880 DDS--SIQIYNVRVD----EVKS-KLKGHSKRITGLAFSHA-L-NVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQIP  945 (1113)
Q Consensus       880 ~dg--~v~iwd~~~~----~~~~-~l~~h~~~V~~l~~s~d-~-~~L~s~s~D~~v~iwd~~~~~~~-----~~~~~~~~  945 (1113)
                      .||  .+++|-....    .+.. .-..|...+...++.+. . ..+++++.||.++||-+...+..     .+.+..+.
T Consensus       426 ~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~  505 (792)
T KOG1963|consen  426 FDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIG  505 (792)
T ss_pred             cCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeee
Confidence            333  5778876543    2222 23568887777776542 2 37999999999999998443221     12333333


Q ss_pred             CCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc-ceeeccccCCCCCCeeEEEECCCC--CEEEEEeCCCcEEEE
Q 001258          946 TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDS--QLVYACFLDATVCVF 1022 (1113)
Q Consensus       946 ~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~Dg~v~vw 1022 (1113)
                      ..|.   .++..++|+.||..|+++.++.|.+||..+. +......  .-..++..++|....  ...+.....+...+|
T Consensus       506 sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~W  580 (792)
T KOG1963|consen  506 SYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDGALVHATQQRLSVW  580 (792)
T ss_pred             cccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhcccccccceeeccCceEehH
Confidence            2233   4789999999999999999999999999883 3222221  113344445543321  123334457889999


Q ss_pred             ecCCCceeeec
Q 001258         1023 SAANLKLRCRI 1033 (1113)
Q Consensus      1023 d~~~~~~~~~~ 1033 (1113)
                      ++.+..+...+
T Consensus       581 Nll~~~l~w~~  591 (792)
T KOG1963|consen  581 NLLSMSLIWNL  591 (792)
T ss_pred             hhhhhheecch
Confidence            99988877633

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.9e-20  Score=206.22  Aligned_cols=253  Identities=16%  Similarity=0.241  Sum_probs=204.6

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      .|+..-+.++|.|+|. +|.+++.||.|++|+....+...                 . ++.-++..|.+++.  ++.+|
T Consensus        11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P-----------------~-ti~~~g~~v~~ia~--~s~~f   69 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP-----------------E-TIDISGELVSSIAC--YSNHF   69 (933)
T ss_pred             hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC-----------------c-hhhccCceeEEEee--cccce
Confidence            4888899999999999 58888899999999986652111                 0 12226778888876  45599


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      ++|+.+++|.+|....++.-.   -+..-.-++.+++|+.+|+  ++|.||.|-.|++-++.+......+.+|.++|.++
T Consensus        70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l  144 (933)
T KOG1274|consen   70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL  144 (933)
T ss_pred             EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence            999999999999999876543   2334556899999999999  89999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      .++|  ++++|++.+-||.|++||+.++.....+..-...-...             ....+..++|+|++..++..+.|
T Consensus       145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~-------------~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFI-------------LSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCcccccc-------------ccceeeeeeecCCCCeEEeeccC
Confidence            9765  55799999999999999999876665544321100000             01234456777777789999999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                      +.|.+|+..+.+....+........+.++.|+|.|+|||+++.+|.|.|||..+
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999988887766655689999999999999999999999999986

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=3.9e-22  Score=191.72  Aligned_cols=242  Identities=16%  Similarity=0.244  Sum_probs=181.2

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-C
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-D  431 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-d  431 (1113)
                      ....|.+.|+++.+.+...+++++|+.||.|.+||++.........+ +.+ ..|.  .....-.+|.-.|..+.|-| |
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~D  113 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPID  113 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeec
Confidence            34459999999999986544699999999999999986542111000 000 0111  01113568999999999999 7


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ...+.+++.|.+++|||..+-+..-   .|+ -.+.|++-++||-.. .-++++|..|-.|++.|+.+|.+-+++.||.+
T Consensus       114 tGmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~  189 (397)
T KOG4283|consen  114 TGMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD  189 (397)
T ss_pred             CceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccC
Confidence            7788899999999999999866443   332 456789999988654 34688888999999999999999999999999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|.++.|+|..+ -.|++|+.||.|++||++..                                               
T Consensus       190 ~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra-----------------------------------------------  221 (397)
T KOG4283|consen  190 GVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA-----------------------------------------------  221 (397)
T ss_pred             ceEEEEeccCce-eEEEecCCCceEEEEEeecc-----------------------------------------------
Confidence            999999998765 68899999999999999852                                               


Q ss_pred             EEecCCcEEEEECCCCceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                          .|..++-|..+++....++ ...+.+.|+.++|+.++.++++.+.|..+++|+..+|...+
T Consensus       222 ----sgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  222 ----SGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             ----cceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccc
Confidence                1223333433333222222 22345679999999999999999999999999998885433

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=4.1e-22  Score=220.76  Aligned_cols=285  Identities=16%  Similarity=0.185  Sum_probs=218.4

Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      .|....+.++|.|+|.+|++++.||.|++|+.......                  ...+.      .+...|.+++.  
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~------------------P~ti~------~~g~~v~~ia~--   64 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE------------------PETID------ISGELVSSIAC--   64 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC------------------Cchhh------ccCceeEEEee--
Confidence            47788999999999999999999999999986432110                  11111      04556666665  


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      ++.+|++++ +++|.+|...+++.-..+....-++++++|+. +|+++|.|+.|-.|++.++.+......+++|.++|.+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            445888888 89999999988776555555567899999999 9999999999999999999999889999999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcccee
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECV  986 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~  986 (1113)
                      |.|+|.+.+||+.+.||.|++||++++....................+..++|+|+|..+++ +.|+.|.+|+..+.+..
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            99999999999999999999999998765432211111111111245678999999665555 89999999999999999


Q ss_pred             eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258          987 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus       987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      ..+....|...+.++.|||+|+|||+++.||.|.|||+++.+. +.+          ...|.  +.+|.| +++-+-...
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-~~~----------~~~Vc--~~aw~p-~~n~it~~~  289 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-HEF----------KRAVC--CEAWKP-NANAITLIT  289 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-ccc----------cceeE--EEecCC-CCCeeEEEe
Confidence            8888877777799999999999999999999999999997222 111          12333  477877 444544444


Q ss_pred             CCCcEEEE
Q 001258         1067 SDGGVHVF 1074 (1113)
Q Consensus      1067 ~Dg~v~vW 1074 (1113)
                      .-|..-+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            44554444

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=1.2e-22  Score=208.25  Aligned_cols=212  Identities=15%  Similarity=0.144  Sum_probs=173.6

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC--
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--  497 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~--  497 (1113)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            3489999999999999999999999999999999876   6789999999999999999  89999999999999874  


Q ss_pred             -------CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          498 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       498 -------~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                             +-++++.|..|.-+|+.+...+.+...+++|+|.|.++++||+..+..+.++..+ ..+.++++.        
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lD--------  226 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALD--------  226 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEc--------
Confidence                   3467789999999999999877756679999999999999999987655544332 234444444        


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCC----------------CceEEEEccCCCCCCcCeEEECCCCCEEE
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----------------VQLLTSIDADGGLPASPRIRFNKDGCLLA  634 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  634 (1113)
                                   |.+..+++|+.+|.|.+.++..                +..+..+.+|.....|+|++++-||.+|+
T Consensus       227 -------------pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  227 -------------PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             -------------ccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                         4445677777777777766543                22445555665545899999999999999


Q ss_pred             EEECCCcEEEEEcCCCccceecccc
Q 001258          635 VSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      +|+.||.+++||+.+. ++++.+..
T Consensus       294 SGd~dg~VcvWdi~S~-Q~iRtl~~  317 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK-QCIRTLQT  317 (476)
T ss_pred             eeCCCCCEEEEecchH-HHHHHHhh
Confidence            9999999999999887 77777654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=8.7e-22  Score=191.76  Aligned_cols=240  Identities=19%  Similarity=0.196  Sum_probs=185.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ..+.|..|.|+|.+.. |++++-||++++||+...+...                    .-.|..++.+++|.+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence            4688999999999996 5566799999999998764432                    345888999999986 66889


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +|+.||.|+.+|+.++....    +..|..+|.||.+++...  .+++||.|++|++||.+...+..++. ....|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence            99999999999999987654    778999999999998777  69999999999999998766666655 334788776


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      .    .|+.|+.|+.|..+.+||+++.........  -...+.++++                     -|++.-+++++-
T Consensus       143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~---------------------~pn~eGy~~sSi  197 (323)
T KOG1036|consen  143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVAL---------------------VPNGEGYVVSSI  197 (323)
T ss_pred             c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEE---------------------ecCCCceEEEee
Confidence            3    336899999999999999998665542211  1223444444                     444446888999


Q ss_pred             CCcEEEEECCCC----ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          595 DFSIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       595 dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ||.|.+=.++..    +....++.|..       .-+|++++|+|--..|++|+.||.|.+||+.+.
T Consensus       198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            999888666554    23333443321       236899999999889999999999999998776

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.90  E-value=6.4e-23  Score=210.37  Aligned_cols=236  Identities=19%  Similarity=0.330  Sum_probs=184.9

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      .+.-.++.+|.++-..++|++...-.|++|+.|++|++||+.......            ........+.+|+..|..++
T Consensus       167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~  234 (422)
T KOG0264|consen  167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVA  234 (422)
T ss_pred             CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhh
Confidence            344567888999999999999888779999999999999997654320            01122336899999999999


Q ss_pred             EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CceeeEe
Q 001258          428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIF  505 (1113)
Q Consensus       428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~~~  505 (1113)
                      |++ +..++++++.|+.+.|||++++ ..+......+|.+.|+|++|+|-+.. +|||||.|++|++||+++ .++++++
T Consensus       235 ~h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~  312 (422)
T KOG0264|consen  235 WHPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTF  312 (422)
T ss_pred             ccccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceec
Confidence            999 7778999999999999999964 33344467899999999999999886 899999999999999997 4578899


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      .+|...|..+.|+|..+ ..|++++.|+.+.+||+........-.....       .|.+-....|.+...+.-+.|+|.
T Consensus       313 e~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~d-------gppEllF~HgGH~~kV~DfsWnp~  384 (422)
T KOG0264|consen  313 EGHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAED-------GPPELLFIHGGHTAKVSDFSWNPN  384 (422)
T ss_pred             cCCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhcc-------CCcceeEEecCcccccccccCCCC
Confidence            99999999999999766 6999999999999999986554432111111       111112334444556777888888


Q ss_pred             CCEEE-EEecCCcEEEEECCC
Q 001258          586 KNRFL-AAGDDFSIKFWDMDS  605 (1113)
Q Consensus       586 ~~~l~-~~~~dg~i~iwd~~~  605 (1113)
                      ..+++ +++.|+.+.||.+..
T Consensus       385 ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  385 EPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCeEEEEecCCceEEEeeccc
Confidence            87655 578999999999853

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.90  E-value=1e-22  Score=209.27  Aligned_cols=281  Identities=12%  Similarity=0.162  Sum_probs=223.7

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEcccccc-CCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTER-NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      |..-|.+++++...+.+.+++ .|.|+|||+..... .+...                     +........|+++.+.|
T Consensus       418 HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~Pvsq---------------------Ldcl~rdnyiRSckL~p  475 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQ---------------------LDCLNRDNYIRSCKLLP  475 (705)
T ss_pred             cCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCcccc---------------------ccccCcccceeeeEecC
Confidence            778888999999988887766 46899999875321 11110                     11122567799999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      ||+.|++|+ -.++.|||+.......  .+......+.+++.+| |.++.++++.||.|.|||+.+...++.|.||.+.+
T Consensus       476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  554 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence            999999999 6889999998654433  3333345678899999 89999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccc
Q 001258          906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE  984 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~  984 (1113)
                      .||.+++||..|-||+-|.+|+-||+..+.+...     ...    ...|.++.++|.+.+++++ .++.+.|......+
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlqq-----hdF----~SQIfSLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ-----HDF----SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhhh-----hhh----hhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence            9999999999999999999999999998654321     111    1478999999999999997 67788888776554


Q ss_pred             eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                      ..   ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+..        ..+.|.+  +-.+. |.++++|
T Consensus       626 ky---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------E~SsVls--CDIS~-ddkyIVT  691 (705)
T KOG0639|consen  626 KY---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLS--CDISF-DDKYIVT  691 (705)
T ss_pred             ce---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------ccCccee--eeecc-CceEEEe
Confidence            32   234679999999999999999999999999999999998886543        2344553  44444 6789999


Q ss_pred             EeCCCcEEEEec
Q 001258         1065 GLSDGGVHVFEP 1076 (1113)
Q Consensus      1065 ~~~Dg~v~vW~~ 1076 (1113)
                      |+.|..--|+.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999988777765

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.8e-22  Score=207.02  Aligned_cols=296  Identities=17%  Similarity=0.266  Sum_probs=216.8

Q ss_pred             EEecCC-CcEEEEeCCCCceeeEeecc-CcCEEEEeeeecCCceEEEEEec-CCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          483 ITCGDD-KTIKVWDATNGAKQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       483 ~s~s~d-~~i~iwd~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                      .+++.| .++.+||+++|....++++. ...-.++..   -++.+++++.. ...|.+|.+.............+.+.++
T Consensus        11 sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~---l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al   87 (476)
T KOG0646|consen   11 SSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA---LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHAL   87 (476)
T ss_pred             eccCCCCcceeEEecCCCceeEEecCcccccchhhhh---hchhheeeecccCccccccccCchhhhhhhcccccceeee
Confidence            344444 45999999999999888765 222222221   11246666654 4578999887544443333333445555


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  639 (1113)
                      +-+|+|                     .+|+.|+..|.|++|.+.+|..+..+..|  ...|+|+.|+.||.++++|+.|
T Consensus        88 ~s~n~G---------------------~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskD  144 (476)
T KOG0646|consen   88 ASSNLG---------------------YFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKD  144 (476)
T ss_pred             ecCCCc---------------------eEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCC
Confidence            555554                     47888889999999999999999988655  6689999999999999999999


Q ss_pred             CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceee
Q 001258          640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  719 (1113)
Q Consensus       640 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  719 (1113)
                      |.|.+|.+.+-.   .....|.                                                          
T Consensus       145 g~V~vW~l~~lv---~a~~~~~----------------------------------------------------------  163 (476)
T KOG0646|consen  145 GAVLVWLLTDLV---SADNDHS----------------------------------------------------------  163 (476)
T ss_pred             ccEEEEEEEeec---ccccCCC----------------------------------------------------------
Confidence            999999875431   1111000                                                          


Q ss_pred             ccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCC--CceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258          720 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS--GNAILALASNAIHLLWKWQRTERNSSGKATASVAP  797 (1113)
Q Consensus       720 ~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  797 (1113)
                         -.-++.|                  ..|.-.|+++...+.  ..++++++.|.++++||+..               
T Consensus       164 ---~~p~~~f------------------~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~---------------  207 (476)
T KOG0646|consen  164 ---VKPLHIF------------------SDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL---------------  207 (476)
T ss_pred             ---ccceeee------------------ccCcceeEEEEecCCCccceEEEecCCceEEEEEecc---------------
Confidence               0111222                  237778888887765  35699999999999998763               


Q ss_pred             eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc----------------eeeeecCCCC
Q 001258          798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK----------------TMATFMPPPP  860 (1113)
Q Consensus       798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~----------------~~~~~~~~~~  860 (1113)
                             |.++....    ....+.+++++|-++.+.+|+ +|.|.+.++....                .+..+.+|..
T Consensus       208 -------g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~  276 (476)
T KOG0646|consen  208 -------GVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN  276 (476)
T ss_pred             -------ceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence                   33332222    567899999999999999998 8999988875322                3455778887


Q ss_pred             --CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC
Q 001258          861 --AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA  913 (1113)
Q Consensus       861 --~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  913 (1113)
                        .|+|++++- ||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|=
T Consensus       277 ~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  277 ESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             CcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence              899999999 9999999999999999999999999999878899999999654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=1.6e-22  Score=214.65  Aligned_cols=435  Identities=15%  Similarity=0.151  Sum_probs=274.1

Q ss_pred             EEEEcC---CCCeEEEEeCCCeEEEEEccCCcee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          425 RVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       425 ~l~~sp---dg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      +..|++   ....||.+..||.|.++|......-   +++..+..|...|..+.|.| |+. .|++++.|.++++||+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~  131 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT  131 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence            356665   4557899999999999998754211   22345678999999999999 443 799999999999999999


Q ss_pred             CceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          499 GAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       499 ~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                      ++++..  +.||.+.|.++||.+... ..+++|+.||.|.+||++-..... +..            ...+++..|....
T Consensus       132 s~l~G~~~~~GH~~SvkS~cf~~~n~-~vF~tGgRDg~illWD~R~n~~d~-~e~------------~~~~~~~~~n~~p  197 (720)
T KOG0321|consen  132 SRLVGGRLNLGHTGSVKSECFMPTNP-AVFCTGGRDGEILLWDCRCNGVDA-LEE------------FDNRIYGRHNTAP  197 (720)
T ss_pred             ceeecceeecccccccchhhhccCCC-cceeeccCCCcEEEEEEeccchhh-HHH------------HhhhhhccccCCC
Confidence            998876  899999999999987654 689999999999999997533110 000            0000000000000


Q ss_pred             eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCe---EEECCCCCEEEEEEC-CCcEEEEEcCCCcc
Q 001258          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIR  652 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~  652 (1113)
                            .|..  .    ....++-|-..             ...|.+   +.+..|...||+++. |+.|++||+.....
T Consensus       198 ------tpsk--p----~~kr~~k~kA~-------------s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~  252 (720)
T KOG0321|consen  198 ------TPSK--P----LKKRIRKWKAA-------------SNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT  252 (720)
T ss_pred             ------CCCc--h----hhccccccccc-------------cCceeeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence                  0000  0    00111112211             122333   556678888998887 99999999987632


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      ..+.-.....                                                                   .+.
T Consensus       253 ~~r~ep~~~~-------------------------------------------------------------------~~~  265 (720)
T KOG0321|consen  253 AYRQEPRGSD-------------------------------------------------------------------KYP  265 (720)
T ss_pred             ccccCCCccc-------------------------------------------------------------------Ccc
Confidence            2211100000                                                                   000


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                      .            . ......+.++.....|.++++.+.|+.|+.|++......+.+...            |..     
T Consensus       266 t------------~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~s------------g~~-----  315 (720)
T KOG0321|consen  266 T------------H-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFS------------GKL-----  315 (720)
T ss_pred             C------------c-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhcc------------Ccc-----
Confidence            0            0 012346778888889999999999999999998865554433221            111     


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                          ....-..-..+|++.++++|+ |....+|.+.+.+. ...+.+|...|++++|.|..-.-++++++|..++||++.
T Consensus       316 ----~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  316 ----NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             ----cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence                011111235689999999998 99999999987654 456789999999999998555667778999999999996


Q ss_pred             cce--------------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258          891 VDE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  956 (1113)
Q Consensus       891 ~~~--------------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  956 (1113)
                      .+-              ....+++|...+..+.++-.+.+-..  ..+.+++|..-                       .
T Consensus       392 ~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~p--R~~~~r~~ssP-----------------------~  446 (720)
T KOG0321|consen  392 NGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDP--REGMNRISSSP-----------------------V  446 (720)
T ss_pred             Cchhhccccccchhhhhhhhhhhccccccccccccccccccch--hhhccccccCc-----------------------c
Confidence            532              22334556555555555433322221  13334444432                       2


Q ss_pred             eEEEccCCcEEEEE-----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC-----------CCcEE
Q 001258          957 RVQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVC 1020 (1113)
Q Consensus       957 ~~~~spdg~~l~~~-----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-----------Dg~v~ 1020 (1113)
                      .++..|++.-...+     ..-.|...+....+........+|-..|....+++.+..+++++.           ++.+.
T Consensus       447 s~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~  526 (720)
T KOG0321|consen  447 SLACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVN  526 (720)
T ss_pred             chhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCccccc
Confidence            33444444433331     112344555444444433333456667777777777778888887           88888


Q ss_pred             EEecCC
Q 001258         1021 VFSAAN 1026 (1113)
Q Consensus      1021 vwd~~~ 1026 (1113)
                      +|....
T Consensus       527 s~~s~l  532 (720)
T KOG0321|consen  527 SPNSSL  532 (720)
T ss_pred             cccccc
Confidence            887654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2.2e-21  Score=189.05  Aligned_cols=283  Identities=15%  Similarity=0.189  Sum_probs=209.5

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      ...+.|+.|.|+|.+..|++++.||++++||+...+...    .-.|..++.+++|.++..   +++|+.||.|+.+|+.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN   83 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence            346789999999999999999999999999999875432    235899999999998765   8999999999999998


Q ss_pred             CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      ++.... +..|..+|.++...+..  ..+++||.|++|++||.+.......+.... .|.++                  
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~------------------  141 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCM------------------  141 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEE------------------
Confidence            887644 45599999999987544  479999999999999998633333322222 33333                  


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                           +-.++.|++|+.+..|.+||+++...........-.-.++|+++.|++.-.++++-||.|.+=.+... +.....
T Consensus       142 -----~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~sk  215 (323)
T KOG1036|consen  142 -----DVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQSK  215 (323)
T ss_pred             -----eccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhhh
Confidence                 33445699999999999999998665443322222345789999998888999999999877544332 000000


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      +   .           +|.+                                                            
T Consensus       216 k---y-----------aFkC------------------------------------------------------------  221 (323)
T KOG1036|consen  216 K---Y-----------AFKC------------------------------------------------------------  221 (323)
T ss_pred             c---e-----------eEEe------------------------------------------------------------
Confidence            0   0           0000                                                            


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                                  |       .-..++          .-                                         .
T Consensus       222 ------------H-------r~~~~~----------~~-----------------------------------------~  231 (323)
T KOG1036|consen  222 ------------H-------RLSEKD----------TE-----------------------------------------I  231 (323)
T ss_pred             ------------e-------ecccCC----------ce-----------------------------------------E
Confidence                        0       000001          00                                         1


Q ss_pred             CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec
Q 001258          818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  880 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~  880 (1113)
                      -.+|.+++|+|-...+|+|+ ||.|.+||+.+.+.+..+..-...|.+++|+. +|..||+|+.
T Consensus       232 ~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s  294 (323)
T KOG1036|consen  232 IYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS  294 (323)
T ss_pred             EEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence            23578899999999999998 99999999999999988887778899999999 8999999873

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=8.2e-22  Score=191.42  Aligned_cols=201  Identities=18%  Similarity=0.288  Sum_probs=159.0

Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1113)
Q Consensus       423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  502 (1113)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|+|.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999866333   6889999999999999999  7999999999999999999999


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  582 (1113)
                      +.+. ..++|+.+.|+|......+++- .+..-.+-++..+.           -..+..++++....      .-....|
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~-~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f  161 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATI-MEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF  161 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEE-ecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence            9887 7789999999998765444443 33333333333211           12223333333211      1112357


Q ss_pred             cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       583 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      ++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++|+.-+.|+.||.|++.
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            8889999999999999999999999998887553 2468899999999999999999999999875

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=4.6e-21  Score=203.41  Aligned_cols=456  Identities=12%  Similarity=0.151  Sum_probs=284.5

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      .|..++|-|||..|++++  +..+.|||...|..+.                   .+++|.+.|+|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAA--g~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA--GSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEec--CCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence            789999999999866654  5689999999998876                   5899999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeee
Q 001258          440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  519 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  519 (1113)
                      .|..|.||+-+-...++     -.|.+.|.|+.|+|-..  .++|++-. ..-+|........+    |...+.+++.+.
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~K----~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVSK----HKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHHh----hhhheeEEEeee
Confidence            99999999876433332     26999999999999998  68888753 46688865443322    333333333334


Q ss_pred             cCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1113)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1113)
                      ..||.+++.|-.+|+|.+-+-. ++....+..   ...+|.+++|+|...   .|             ....+++.....
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q  203 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ  203 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence            5788999999999999887543 333333333   445788888887643   01             012466677778


Q ss_pred             cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      ++.+|.+. |+.+..-..-+  -...|+.+.++|.++..|+.|+.+.+|-- .| -.+.++                   
T Consensus       204 TLSFy~Ls-G~~Igk~r~L~--FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~G-vrLGTv-------------------  259 (1081)
T KOG1538|consen  204 TLSFYQLS-GKQIGKDRALN--FDPCCISYFTNGEYILLGGSDKQLSLFTR-DG-VRLGTV-------------------  259 (1081)
T ss_pred             eeEEEEec-ceeecccccCC--CCchhheeccCCcEEEEccCCCceEEEee-cC-eEEeec-------------------
Confidence            88888874 45444222111  13468999999999999999999999842 22 011000                   


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                                                             ......|..
T Consensus       260 -----------------------------------------------------------------------g~~D~WIWt  268 (1081)
T KOG1538|consen  260 -----------------------------------------------------------------------GEQDSWIWT  268 (1081)
T ss_pred             -----------------------------------------------------------------------cccceeEEE
Confidence                                                                                   003457888


Q ss_pred             EEEeCCCceEEEeecCCeEEEEEccccccC---------------------CCC------------------ceee---e
Q 001258          757 LIFTNSGNAILALASNAIHLLWKWQRTERN---------------------SSG------------------KATA---S  794 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~---------------------~~~------------------~~~~---~  794 (1113)
                      ++..|+++.++.|+.||++..|++...+..                     ..+                  ..++   .
T Consensus       269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp  348 (1081)
T KOG1538|consen  269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP  348 (1081)
T ss_pred             EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence            999999999999999999999887543100                     000                  0000   0


Q ss_pred             ecCeecCCCCccccccccCCCCCCCCccEEEEe---cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEE--ec
Q 001258          795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS---KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HP  869 (1113)
Q Consensus       795 ~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s---~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~  869 (1113)
                      ..+.+|...++.......+-  ...-+..+.+|   -.+..++.+.+..+.-+|...-+. +... -.+-|.-+..  -|
T Consensus       349 eki~iYel~se~~~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP  424 (1081)
T KOG1538|consen  349 EKILIYELYSEDLSDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGP  424 (1081)
T ss_pred             ceEEEEeccccccccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCC
Confidence            02233433333221110000  00000111111   133445555555666666542111 0000 0001111111  12


Q ss_pred             CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC
Q 001258          870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  949 (1113)
Q Consensus       870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~  949 (1113)
                      .+..-|+.|..||.|.-.=+.+.-++ -+......|.|+..+...+.||+....++..++|+.+++..    .+.+    
T Consensus       425 ~gREgL~vGlknGqV~kiF~dN~~Pi-Ll~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL----~QEp----  495 (1081)
T KOG1538|consen  425 PGREGLLVGLKNGQVLKIFVDNLFPI-LLLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL----FQEP----  495 (1081)
T ss_pred             CCcceeEEEecCCcEEEEEecCCchh-heecccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE----eecC----
Confidence            24456788988887654333432222 22334567999999999999999999999999999996542    1111    


Q ss_pred             CCCCCCceEEEccCCc-EEEEEcCCeEEE
Q 001258          950 PTAQSDTRVQFHQDQI-HFLVVHETQLAI  977 (1113)
Q Consensus       950 ~~~~~i~~~~~spdg~-~l~~~~d~~v~v  977 (1113)
                          .+.+++|+.... +++.+..|.+.|
T Consensus       496 ----g~nSV~wNT~~E~MlcfT~~g~L~V  520 (1081)
T KOG1538|consen  496 ----GANSVAWNTQCEDMLCFTGGGYLNV  520 (1081)
T ss_pred             ----CCceEEeeccccceEEEecCCceEE
Confidence                467888887544 333354455443

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.5e-21  Score=189.59  Aligned_cols=267  Identities=13%  Similarity=0.211  Sum_probs=191.1

Q ss_pred             CCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258          346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1113)
Q Consensus       346 ~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  425 (1113)
                      +.|.++..++.|.. -.|+.||+.|.+ ||+|..||.|.|||+.|...-.                   ++.+|..+|.+
T Consensus        12 ~~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~s   70 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITS   70 (405)
T ss_pred             cChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeE
Confidence            34667778888777 899999999995 9999999999999998865322                   68999999999


Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  505 (1113)
                      ++||+||+.|+++|.|..|++||+..|.+++.+   + ...+|+.+.|.|-.....++ .=.+..-.+-++..+.. ..+
T Consensus        71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri---r-f~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h-~~L  144 (405)
T KOG1273|consen   71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI---R-FDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKH-SVL  144 (405)
T ss_pred             EEecCCCCEeeeecCCceeEEEeccCCCceeEE---E-ccCccceeeeccccCCeEEE-EEecCCcEEEEecCCce-eec
Confidence            999999999999999999999999999977643   2 46799999999987763444 33444455555544221 112


Q ss_pred             ec-cCcC--EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEE
Q 001258          506 EG-HEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       506 ~~-h~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .. ..+.  +.+-+-.++..|+++++|...|.+.++|..+.+++..+.... ..|..+.++..|                
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g----------------  208 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG----------------  208 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccC----------------
Confidence            11 1111  111111245677999999999999999999887776655444 445555555555                


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCC-------ceE--EEEccCCCCCCcCeEEECCCCCEEEEEEC-CCcEEEEEcCCCc
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSV-------QLL--TSIDADGGLPASPRIRFNKDGCLLAVSTN-DNGIKILATSDGI  651 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~  651 (1113)
                           ..++.-+.|..|+.|++..-       +..  +.+..--....-.+++|+.+|.|++.++. .+.++||....| 
T Consensus       209 -----~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G-  282 (405)
T KOG1273|consen  209 -----RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIG-  282 (405)
T ss_pred             -----cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCc-
Confidence                 47999999999999998631       111  11110001122358999999999988764 467999998888 


Q ss_pred             cceecccccc
Q 001258          652 RLLRTFENLA  661 (1113)
Q Consensus       652 ~~~~~~~~~~  661 (1113)
                      .+++.+.|..
T Consensus       283 sLVKILhG~k  292 (405)
T KOG1273|consen  283 SLVKILHGTK  292 (405)
T ss_pred             ceeeeecCCc
Confidence            7777776543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=2.5e-21  Score=197.97  Aligned_cols=249  Identities=13%  Similarity=0.196  Sum_probs=194.2

Q ss_pred             ccCceEEEEEeCCCc-eEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          750 RATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      ...+|.+++|.|+|. .+++++.-...+.||+..........                     +.+ -....+....+++
T Consensus       256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVSh  313 (514)
T KOG2055|consen  256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSH  313 (514)
T ss_pred             ccCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecC
Confidence            346789999999999 78888888899999886543321110                     011 1234577889999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc-CeE
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RIT  906 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~  906 (1113)
                      ++++|+..+ .|.|.+....+++.+..+. ..+.|..++|+. +++.|.+.+.+|.|.+||+....+++.+....+ .=+
T Consensus       314 d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gt  391 (514)
T KOG2055|consen  314 DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGT  391 (514)
T ss_pred             CCCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCcccee
Confidence            999999988 8999999999999988887 466799999998 888888888999999999999999888864221 236


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE---cCCeEEEEeCCc
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTK  982 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~---~d~~v~v~d~~~  982 (1113)
                      ++|.|+++.+||+||..|.|.|||.++.-... ..++.....-.   ..|+.+.|++|++.||++   ....+++..+..
T Consensus       392 s~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  392 SLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             eeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            78888999999999999999999976522111 11111111111   378999999999999984   456899999999


Q ss_pred             cceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258          983 LECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       983 ~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      ......|.... --+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus       469 ~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  469 CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            88888887532 25679999999999999999999999999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3.6e-20  Score=204.13  Aligned_cols=205  Identities=18%  Similarity=0.212  Sum_probs=149.1

Q ss_pred             EEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-cEEEEEcccceeeeeec
Q 001258          823 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~  899 (1113)
                      .++++|+++.++++.  ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            456777777665443  67888899888777666653 23468899999 888998888765 57788998887765543


Q ss_pred             ccccCeEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEE
Q 001258          900 GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA  976 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~  976 (1113)
                      . ...+.+++|++++++|+.+ ..++.|++||+.+++.......... +..........++|+|+++++++  +.++.+.
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP-GVHPEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc-ccccccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            2 3356789999999988644 4699999999998754322111111 10000113456889999998655  3567899


Q ss_pred             EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE-eCCCcEEEEecCCCceeeecC
Q 001258          977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +||+.+++.+..+.   +...+.+++|+|+|++|+++ +.+|.|+|||+.+++.+.++.
T Consensus       233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99999988876543   24578999999999999886 468999999999999988876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=4.7e-20  Score=203.18  Aligned_cols=294  Identities=13%  Similarity=0.140  Sum_probs=204.0

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      ++.+++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||..+++.+..+..+.. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence            3578899999999999999987665   455444 4778999999984 346778899999999999988877765544 


Q ss_pred             EEEEeeeecCCceEEE-EEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          512 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      +..++|++  +++.++ +++.++.|++||+.+......+.. ...+..                     ++++|++.+++
T Consensus        75 ~~~~~~~~--~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~---------------------~~~~~dg~~l~  130 (300)
T TIGR03866        75 PELFALHP--NGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEG---------------------MAVSPDGKIVV  130 (300)
T ss_pred             ccEEEECC--CCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcce---------------------EEECCCCCEEE
Confidence            45666654  445554 556689999999987544433321 112233                     45555555777


Q ss_pred             EEecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEcCCCccceeccccccccccccC
Q 001258          591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1113)
Q Consensus       591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1113)
                      ++..++ .+.+||..+++.........   ...+++|+|++++++++ ..++.|++||+.++ +....+..+        
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~--------  198 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE--------  198 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence            777654 57788998887766553322   35789999999988655 45899999998766 222111000        


Q ss_pred             CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258          669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  748 (1113)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  748 (1113)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (300)
T TIGR03866       199 --------------------------------------------------------------------------------  198 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                                  ..+.       .                                           ........++|+|
T Consensus       199 ------------~~~~-------~-------------------------------------------~~~~~~~~i~~s~  216 (300)
T TIGR03866       199 ------------IPGV-------H-------------------------------------------PEAVQPVGIKLTK  216 (300)
T ss_pred             ------------cccc-------c-------------------------------------------cccCCccceEECC
Confidence                        0000       0                                           0011223577888


Q ss_pred             CCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCCcEEEEEcccceeeeeecccccCe
Q 001258          829 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       829 ~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      ++++++++.  ++.|.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|.+||+.+++++..+... ...
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~  293 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP  293 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence            888755542  6789999998887766553 345689999999 88888776 46899999999999999888755 556


Q ss_pred             EEEEEcC
Q 001258          906 TGLAFSH  912 (1113)
Q Consensus       906 ~~l~~s~  912 (1113)
                      ++++++|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888875

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=4.6e-21  Score=184.39  Aligned_cols=305  Identities=16%  Similarity=0.245  Sum_probs=213.5

Q ss_pred             cccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceee------------eeeeeecccCCeeEEEEcCCCCeeE
Q 001258          415 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR------------QHLEIDAHVGGVNDIAFSHPNKQLC  481 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~------------~~~~l~~h~~~V~~v~~s~~~~~~~  481 (1113)
                      +...|.+.|+.+...+ .|+|+++|+.||.|.|||++.....+            ....-.+|.-.|.++.|-|-+.. +
T Consensus        38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG-m  116 (397)
T KOG4283|consen   38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG-M  116 (397)
T ss_pred             eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc-e
Confidence            4567999999999998 79999999999999999998644111            01112478889999999997665 7


Q ss_pred             EEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEE
Q 001258          482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY  561 (1113)
Q Consensus       482 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~  561 (1113)
                      |.++|.|.+++|||..+-+....|+ ..+.|.+-+++|-....                                     
T Consensus       117 FtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sH-------------------------------------  158 (397)
T KOG4283|consen  117 FTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSH-------------------------------------  158 (397)
T ss_pred             eecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcc-------------------------------------
Confidence            9999999999999998887766665 44555555544321100                                     


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCC
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDN  640 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg  640 (1113)
                                               ..+++|..+-.|++.|+.+|..-+.+.+|  ...|.++.|+|... .|++|+.||
T Consensus       159 -------------------------cLiA~gtr~~~VrLCDi~SGs~sH~LsGH--r~~vlaV~Wsp~~e~vLatgsaDg  211 (397)
T KOG4283|consen  159 -------------------------CLIAAGTRDVQVRLCDIASGSFSHTLSGH--RDGVLAVEWSPSSEWVLATGSADG  211 (397)
T ss_pred             -------------------------eEEEEecCCCcEEEEeccCCcceeeeccc--cCceEEEEeccCceeEEEecCCCc
Confidence                                     13677778888999999999999999877  45899999999655 578999999


Q ss_pred             cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeec
Q 001258          641 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  720 (1113)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  720 (1113)
                      .|++||+.....++..+..|....                                                        
T Consensus       212 ~irlWDiRrasgcf~~lD~hn~k~--------------------------------------------------------  235 (397)
T KOG4283|consen  212 AIRLWDIRRASGCFRVLDQHNTKR--------------------------------------------------------  235 (397)
T ss_pred             eEEEEEeecccceeEEeecccCcc--------------------------------------------------------
Confidence            999999875534444444332100                                                        


Q ss_pred             cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeec
Q 001258          721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  800 (1113)
Q Consensus       721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw  800 (1113)
                                      +...+    ...                                                    
T Consensus       236 ----------------~p~~~----~n~----------------------------------------------------  243 (397)
T KOG4283|consen  236 ----------------PPILK----TNT----------------------------------------------------  243 (397)
T ss_pred             ----------------Ccccc----ccc----------------------------------------------------
Confidence                            00000    001                                                    


Q ss_pred             CCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec---CCCC----CeeEEEEecCCC
Q 001258          801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM---PPPP----AATFLAFHPQDN  872 (1113)
Q Consensus       801 ~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~---~~~~----~i~~l~~s~~d~  872 (1113)
                                     .|.+.+..+||+.++.++++.+ |..+++|+...|+....--   .|..    .+. +. +. +.
T Consensus       244 ---------------ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~-~s  305 (397)
T KOG4283|consen  244 ---------------AHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SM-DS  305 (397)
T ss_pred             ---------------cccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ec-cc
Confidence                           1555555666666666666555 6666666665544321110   0110    111 11 22 33


Q ss_pred             cEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      ..++---.++.+.++++-++..+..+..|-..|.+.++-|+-+.+.+++.|+.+..|..
T Consensus       306 ~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  306 DVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            34444445689999999999999999999999999999999999999999999999986

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=4.9e-21  Score=201.61  Aligned_cols=313  Identities=16%  Similarity=0.208  Sum_probs=227.0

Q ss_pred             eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      ..+.||++.|.+|...|.|.  +|++|+.||+|+||.+.+|+|++++. ..+.|.|++|++.++..+|+.+-... +.+-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence            35789999999999999999  89999999999999999999999887 56789999999998866666655444 5554


Q ss_pred             EcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE----ecCCcEEEEECCCCce----EE
Q 001258          539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT  610 (1113)
Q Consensus       539 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~~  610 (1113)
                      +..-+..+.....                                  ...|.++    ..++.+..|.-.....    +.
T Consensus       470 np~~G~~~e~~~t----------------------------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~  515 (733)
T KOG0650|consen  470 NPIFGDRLEVGPT----------------------------------KELLASAPNESEPDAAVVTWSRASLDELEKGVC  515 (733)
T ss_pred             Cccccchhhhcch----------------------------------hhhhhcCCCccCCcccceeechhhhhhhccceE
Confidence            4332211110000                                  0012221    2345677776542111    11


Q ss_pred             EEccCCCCCCcCeEEECCCCCEEEEEECCC---cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhc
Q 001258          611 SIDADGGLPASPRIRFNKDGCLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT  687 (1113)
Q Consensus       611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1113)
                      ..-  .+...|..+.|+..|.||++...++   .|.|.++.... ...                  .|            
T Consensus       516 ~~I--~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~-sQ~------------------PF------------  562 (733)
T KOG0650|consen  516 IVI--KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK-SQS------------------PF------------  562 (733)
T ss_pred             EEE--ecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-ccC------------------ch------------
Confidence            221  2245799999999999999886643   35555543321 000                  00            


Q ss_pred             ccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEE
Q 001258          688 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  767 (1113)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  767 (1113)
                                                                                  ....+.|.++.|+|...+++
T Consensus       563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf  582 (733)
T KOG0650|consen  563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF  582 (733)
T ss_pred             ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence                                                                        11456789999999999888


Q ss_pred             EeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEEC
Q 001258          768 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  846 (1113)
Q Consensus       768 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~  846 (1113)
                      +++.. .|+|||+.                      .+.++...++   ....|..++++|.|..|+.|+ |+.+..||+
T Consensus       583 VaTq~-~vRiYdL~----------------------kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  583 VATQR-SVRIYDLS----------------------KQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             EEecc-ceEEEehh----------------------HHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence            87765 67777765                      3333333233   467789999999999999998 999999999


Q ss_pred             CC-CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc------c---eeeeeecccccC----eEEEEEcC
Q 001258          847 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAFSH  912 (1113)
Q Consensus       847 ~~-~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~------~---~~~~~l~~h~~~----V~~l~~s~  912 (1113)
                      +- .+..+++..|...+++|+|++ .-.++++|+.||++.|+.-.-      .   -.+..+++|...    |..+.|+|
T Consensus       637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            84 456788899999999999999 788999999999999986421      1   245778899876    89999999


Q ss_pred             CCCEEEEEeCCCcEEEE
Q 001258          913 ALNVLVSSGADSQLCVW  929 (1113)
Q Consensus       913 d~~~L~s~s~D~~v~iw  929 (1113)
                      ...+|++++.||+|++|
T Consensus       716 ~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEEecCCCceEEee
Confidence            99999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.2e-21  Score=195.11  Aligned_cols=245  Identities=16%  Similarity=0.262  Sum_probs=188.3

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-eEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFG  436 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~la  436 (1113)
                      .+.|++|.|+|..+ +|.+++.||+++||.+.....-.               .+.  +.--..+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~---------------lqS--~~l~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPK---------------LQS--IHLEKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChh---------------hee--eeeccCccceeeecCCCceEEE
Confidence            57999999999999 68899999999999987432111               111  122244899999999999 899


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      +++.......||+.+.+.. ++..+.++. ..+.....+++++  +|+..|..|.|.+-...+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~-k~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVT-KLKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeeccccccc-cccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            9999999999999998754 333455555 3677889999999  89999999999999999999999888 56789999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC-ceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      +|+  .++..|++++.+|.|.+||++...++..+...+. .-++                     +|.++++.+|++|+.
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts---------------------~~~S~ng~ylA~GS~  407 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS---------------------LCISLNGSYLATGSD  407 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee---------------------eeecCCCceEEeccC
Confidence            986  5668899999999999999998876666554332 2233                     444555558999999


Q ss_pred             CCcEEEEECCC------CceEEEEccCCCCCCcCeEEECCCCCEEEEEEC--CCcEEEEEcCC
Q 001258          595 DFSIKFWDMDS------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN--DNGIKILATSD  649 (1113)
Q Consensus       595 dg~i~iwd~~~------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~  649 (1113)
                      .|.|.|||.++      .+++..+..  -...|+++.|++|+++|+.++.  ...+++..+.+
T Consensus       408 ~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS  468 (514)
T KOG2055|consen  408 SGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS  468 (514)
T ss_pred             cceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCcchhhhhhhhhccccceEEEeccc
Confidence            99999999654      234444332  2457899999999999998876  44566665543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=6.5e-21  Score=202.48  Aligned_cols=291  Identities=13%  Similarity=0.116  Sum_probs=208.3

Q ss_pred             CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeE
Q 001258          763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  841 (1113)
Q Consensus       763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i  841 (1113)
                      ...|+.+.++|.|.++|.....+.+               +..++..  .  ..|...|..+.|-|....|++++ |.++
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~  124 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFRL---------------EERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTI  124 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcch---------------hhhhhcc--c--ccccceeEeeccCCCceeEEEccCCcee
Confidence            3456677778999999876544321               1111111  1  12899999999999666778877 8999


Q ss_pred             EEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce--------------------------
Q 001258          842 SLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--------------------------  893 (1113)
Q Consensus       842 ~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~--------------------------  893 (1113)
                      ++||+++.++...  +.+|...+.+++|.|.+...+++|+.||.|.|||+.-..                          
T Consensus       125 r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~  204 (720)
T KOG0321|consen  125 RPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLK  204 (720)
T ss_pred             eeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhh
Confidence            9999999888776  889999999999999889999999999999999985211                          


Q ss_pred             -eeeeecccccCeEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccccccCCCCCC--CCCCCceEEEccCCc
Q 001258          894 -VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRFLQIPTGRTP--TAQSDTRVQFHQDQI  965 (1113)
Q Consensus       894 -~~~~l~~h~~~V~~---l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~-~~~~~~~~~~~~--~~~~i~~~~~spdg~  965 (1113)
                       .+....+|...|.+   +.+..|...||++|. |+.|++||+......- ........-+..  ....+.++.....|.
T Consensus       205 kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  205 KRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence             11222345556665   566678899999998 9999999998754321 111222111111  113456666777778


Q ss_pred             EEEE-EcCCeEEEEeCCccceeeccccCCC--CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC
Q 001258          966 HFLV-VHETQLAIFETTKLECVKQWVPRES--SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus       966 ~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
                      +|.+ +.|+.|.+|++.+...-......++  ...-..-..+||+.+|++|+.|..+++|.+.+-+.--.+      -.|
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------l~G  358 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------LLG  358 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhh------hhC
Confidence            8877 7999999999987654333332232  222233456999999999999999999999876554222      238


Q ss_pred             cccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1043 VSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |.-+|+.  +.|.|.+-.-++++++|.++++|++.++-
T Consensus       359 ht~eVt~--V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  359 HTREVTT--VRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             cceEEEE--EeeccccCCCceeeccCcceEEEeccCch
Confidence            9899986  67777655678888999999999997665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=2.9e-20  Score=197.35  Aligned_cols=440  Identities=14%  Similarity=0.193  Sum_probs=269.9

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      .|..++|-|||..|+.+..+ .+.|||...|..+.   ++++|.+.|+|++|+.||+  .+++|+.|+.|.+|+..-. -
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klE-G   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLE-G   86 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccccc-c
Confidence            89999999999999888644 59999999999777   8999999999999999999  7999999999999985422 2


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +..+ .|.+.|.|+.|+|-.  ..|++++.. ..-+|......                       +........+.+.+
T Consensus        87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~-----------------------V~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKS-----------------------VSKHKSSSRIICCS  139 (1081)
T ss_pred             eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhh-----------------------HHhhhhheeEEEee
Confidence            2222 399999999988765  578887653 35567544311                       11111112344455


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-CCCCCCcCeEEECCCCC-----EEEEEECCCcEEEEEcCCCcccee
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGC-----LLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~-----~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                      |..||.+++.|-.+|+|.+-+. +++....+.. .+...+|.+++|+|...     .+++.....++.++.+...  .+ 
T Consensus       140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~I-  215 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QI-  215 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--ee-
Confidence            5566668999999999999875 4444444433 33456899999999642     3444444444444433211  00 


Q ss_pred             ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258          656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  735 (1113)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~  735 (1113)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (1081)
T KOG1538|consen  216 --------------------------------------------------------------------------------  215 (1081)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258          736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  815 (1113)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~  815 (1113)
                        .+-+.+       .-.-.++.+.++|.+++.|+.|+.+.+|.-.                       |..+.. +.  
T Consensus       216 --gk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-----------------------GvrLGT-vg--  260 (1081)
T KOG1538|consen  216 --GKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTRD-----------------------GVRLGT-VG--  260 (1081)
T ss_pred             --cccccC-------CCCchhheeccCCcEEEEccCCCceEEEeec-----------------------CeEEee-cc--
Confidence              001111       1123578888999999999999999988643                       111111 11  


Q ss_pred             CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceee------------------ee-cCCCCCeeE------EEEec
Q 001258          816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA------------------TF-MPPPPAATF------LAFHP  869 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~------------------~~-~~~~~~i~~------l~~s~  869 (1113)
                      .....|..++..|++++++.|. ||+|.-|++.......                  .+ .+....|.|      ++.- 
T Consensus       261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY-  339 (1081)
T KOG1538|consen  261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY-  339 (1081)
T ss_pred             ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-
Confidence            1577899999999999999999 9999999975322110                  00 111111211      2221 


Q ss_pred             CCCcEEEEEecCCcEEEEEcccceeeeee-cccccCeEEEEEc---CCCCEEEEEeCCCcEEEEeCCCCccccccccccC
Q 001258          870 QDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP  945 (1113)
Q Consensus       870 ~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s---~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~  945 (1113)
                        .+.||+--.+ .|.||.+.+++...-. +-...-+..+.+|   -.++.++. +.+..+.-+|+..-....+..... 
T Consensus       340 --rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVl-CqekrLqClDF~Gvk~ReW~M~S~-  414 (1081)
T KOG1538|consen  340 --RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVL-CQEKRLQCLDFSGVKEREWQMESL-  414 (1081)
T ss_pred             --hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEE-EcccceeeecccchhhhhhhHHHH-
Confidence              2345655444 6888888765422110 0000011111111   12344443 356667778876643332211111 


Q ss_pred             CCCCCCCCCCceEEE--ccCC-cEEEEE-cCCeE-EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258          946 TGRTPTAQSDTRVQF--HQDQ-IHFLVV-HETQL-AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus       946 ~~~~~~~~~i~~~~~--spdg-~~l~~~-~d~~v-~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
                               |..+..  -|-| .-|++| .+|.| +||=-+....+..    .....|.|+.++...+.||+..+.++..
T Consensus       415 ---------iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl~----~~~tAvrClDINA~R~kLAvVDD~~~c~  481 (1081)
T KOG1538|consen  415 ---------IRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILLL----KQATAVRCLDINASRKKLAVVDDNDTCL  481 (1081)
T ss_pred             ---------HHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhhee----cccceeEEeeccCCcceEEEEccCCeEE
Confidence                     111111  1222 234443 56553 4443222222111    2266899999999999999999999999


Q ss_pred             EEecCCCceeeec
Q 001258         1021 VFSAANLKLRCRI 1033 (1113)
Q Consensus      1021 vwd~~~~~~~~~~ 1033 (1113)
                      ++|+.+++.+.+-
T Consensus       482 v~DI~t~elL~QE  494 (1081)
T KOG1538|consen  482 VYDIDTKELLFQE  494 (1081)
T ss_pred             EEEccCCceEeec
Confidence            9999999988653

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5e-20  Score=178.94  Aligned_cols=268  Identities=19%  Similarity=0.383  Sum_probs=188.0

Q ss_pred             ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258          462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1113)
Q Consensus       462 ~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1113)
                      .+|.+-|.++.|.+.|+  .+++|+.|++|+|||..+.    .+...++.|.+.|..+.|.+..-|+.+++++.|+++.+
T Consensus        10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            47999999999999999  6999999999999997543    45567789999999999999888999999999999999


Q ss_pred             EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1113)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1113)
                      |.-..    .....++                                             +-|.     ...++.  ..
T Consensus        88 WEE~~----~~~~~~~---------------------------------------------~~Wv-----~~ttl~--Ds  111 (361)
T KOG2445|consen   88 WEEQE----KSEEAHG---------------------------------------------RRWV-----RRTTLV--DS  111 (361)
T ss_pred             eeecc----ccccccc---------------------------------------------ceeE-----EEEEee--cC
Confidence            95321    1111111                                             1111     111121  22


Q ss_pred             CCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258          618 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  695 (1113)
Q Consensus       618 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1113)
                      ...|+.+.|.|  -|-.|++++.||.+|||+.-+..                                            
T Consensus       112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------------------------------  147 (361)
T KOG2445|consen  112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------------------------------  147 (361)
T ss_pred             CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence            34688999998  57789999999999999865441                                            


Q ss_pred             ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258          696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  775 (1113)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  775 (1113)
                                                   .++-|.+..     ..+.+..+...                          
T Consensus       148 -----------------------------nLs~W~Lq~-----Ei~~~~~pp~~--------------------------  167 (361)
T KOG2445|consen  148 -----------------------------NLSQWTLQH-----EIQNVIDPPGK--------------------------  167 (361)
T ss_pred             -----------------------------ccccchhhh-----hhhhccCCccc--------------------------
Confidence                                         111222211     00000000001                          


Q ss_pred             EEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC---CCEEEEEeCC------eEEEEEC
Q 001258          776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM  846 (1113)
Q Consensus       776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~---~~~l~~~sdg------~i~vwd~  846 (1113)
                                                               +.....|+.|+|.   ..+||+|+|.      .+.||..
T Consensus       168 -----------------------------------------~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  168 -----------------------------------------NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             -----------------------------------------ccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                                                     2222333444332   2356666643      6777776


Q ss_pred             CCC----ceeeeecCCCCCeeEEEEecCCC---cEEEEEecCCcEEEEEccc--------------------ceeeeeec
Q 001258          847 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRV--------------------DEVKSKLK  899 (1113)
Q Consensus       847 ~~~----~~~~~~~~~~~~i~~l~~s~~d~---~~la~g~~dg~v~iwd~~~--------------------~~~~~~l~  899 (1113)
                      ...    ..+.++.+|..+|+.++|.|.-|   .+||+++.|| |+||++..                    -+.+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            532    34556788999999999999544   5899999999 99999873                    13456678


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      +|.+.|+.+.|.-.|..|+|.|.||+|++|...-
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            9999999999999999999999999999997643

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=2e-20  Score=186.57  Aligned_cols=267  Identities=15%  Similarity=0.234  Sum_probs=197.1

Q ss_pred             CCcceeEeccCCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceE
Q 001258          347 LPKTVTRTLNQGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVN  424 (1113)
Q Consensus       347 ~~~~~~~~~~h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  424 (1113)
                      .|......+.|.+.|+.+.-++-|+ .++|+=+..|.|.|||+...-.. ....+.+.+    ....+...+.+|.+.=+
T Consensus       140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy  215 (440)
T KOG0302|consen  140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY  215 (440)
T ss_pred             cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence            4555667778999999999998864 35666677899999998542111 000000111    11112235789999999


Q ss_pred             EEEEcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---c
Q 001258          425 RVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---A  500 (1113)
Q Consensus       425 ~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~  500 (1113)
                      .++||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|+|||.||+|+|||++.+   .
T Consensus       216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~  294 (440)
T KOG0302|consen  216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA  294 (440)
T ss_pred             eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence            999999 3335788888888999999988755444467789999999999999887 8999999999999999988   3


Q ss_pred             eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      ++.+ +.|.+.|+.+.|+...  .+|++|+.||+++|||++..   .++..+..|..+|+++.|+|...           
T Consensus       295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~-----------  360 (440)
T KOG0302|consen  295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED-----------  360 (440)
T ss_pred             eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC-----------
Confidence            3433 7899999999987654  49999999999999999864   34557788888888888887654           


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCCce----------------EEEEccCCCCCCcCeEEECCC-CCEEEEEECCC
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKD-GCLLAVSTNDN  640 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg  640 (1113)
                               ..+++++.|.+|.+||+....-                -+.+-.|.+...+..+.|++. ..++++.+.||
T Consensus       361 ---------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG  431 (440)
T KOG0302|consen  361 ---------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG  431 (440)
T ss_pred             ---------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence                     2488899999999999853221                112223444567888999985 34666666665


Q ss_pred             c
Q 001258          641 G  641 (1113)
Q Consensus       641 ~  641 (1113)
                      .
T Consensus       432 f  432 (440)
T KOG0302|consen  432 F  432 (440)
T ss_pred             e
Confidence            4

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.7e-22  Score=213.98  Aligned_cols=234  Identities=12%  Similarity=0.303  Sum_probs=203.8

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      .|...|.|+..-..++ .+++|+.|..+-+|.+.....+.                   -+.+|..+|.++.|+++..+|
T Consensus        26 ~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Ll   85 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLL   85 (825)
T ss_pred             hhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhh
Confidence            3888889998866666 69999999999999886543332                   378999999999999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      ++|+.+|+|++||+..++.++   +|.+|...+..+.|+|-+.  ++++|+.|+.+++||.+...|.+.+.+|...|..+
T Consensus        86 aagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   86 AAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             cccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEE
Confidence            999999999999999988777   8999999999999999999  78999999999999999999999999999999999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      .|.  ++|.++++|+.|.++++||+..++....|..|...+.++.|.|..-                     .++.|+.|
T Consensus       161 ~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~---------------------Lla~Gs~d  217 (825)
T KOG0267|consen  161 RLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEV---------------------LLAPGSSD  217 (825)
T ss_pred             eec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhh---------------------hhccCCCC
Confidence            975  5668999999999999999998888888888877777666655443                     58889999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  639 (1113)
                      ++|++||+++.+.+......  ...|.+.+|+|++..+.+|...
T Consensus       218 ~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  218 RTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence            99999999988877776544  5679999999999999888654

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.7e-22  Score=213.97  Aligned_cols=232  Identities=15%  Similarity=0.228  Sum_probs=202.5

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      |...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|..+|.++.|++ +..+|++|+.+|+|++||+..++.+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence            777788888877888999998 67788999988888888999999999999999 8899999999999999999999999


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCe
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  974 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~  974 (1113)
                      ++|.||...+.++.|+|-+.+.++++.|..+++||+....     +.....+|.   ..+..+.|+|+|++++.+ .|..
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence            9999999999999999999999999999999999998633     344455544   378899999999999995 6799


Q ss_pred             EEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258          975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
                      ++|||+..|+....|.  .|...+.++.|.|..-++++|+.|++|++||+++.+.+....       .....|.  +.+|
T Consensus       178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~-------~~~~~v~--~~~f  246 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK-------PETDGVR--SLAF  246 (825)
T ss_pred             eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccC-------CccCCce--eeee
Confidence            9999999999999987  789999999999999999999999999999999999997765       2233444  4888


Q ss_pred             eCCCCCEEEEEeCCC
Q 001258         1055 HPQEPNEFALGLSDG 1069 (1113)
Q Consensus      1055 ~p~d~~~l~s~~~Dg 1069 (1113)
                      .| ++..+++|..+.
T Consensus       247 n~-~~~~~~~G~q~s  260 (825)
T KOG0267|consen  247 NP-DGKIVLSGEQIS  260 (825)
T ss_pred             cC-CceeeecCchhh
Confidence            88 787777775543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=3.2e-20  Score=189.84  Aligned_cols=260  Identities=19%  Similarity=0.282  Sum_probs=195.8

Q ss_pred             CCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCe
Q 001258          357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  434 (1113)
                      +..+|++++|+|... .++|+|...|+|-+||+.+.+......               ..+..|.++|.++.|+| +-..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence            889999999999876 789999999999999996444332211               15789999999999999 6678


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-eeEeeccCcCEE
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY  513 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~  513 (1113)
                      +.+.|.||+|++-|++++.. ..+..+..-...+..+.|+.+..  .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            88999999999999997642 22223433455788899998888  577777777999999997654 566777889999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee----eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      +++++|-.. .+++|+|.|++.+|||++.......    ...|..                     .+....|+|.+..|
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrr---------------------sV~sAyFSPs~gtl  384 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRR---------------------SVNSAYFSPSGGTL  384 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccc---------------------eeeeeEEcCCCCce
Confidence            999998765 6899999999999999987544332    223333                     44455555555569


Q ss_pred             EEEecCCcEEEEECC----CCceEEEEccCCCC---CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          590 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      ++.+.|..|+|||..    ...+...+......   -......|.|+..++++|-.-..|-|+|-..+ +.+..+
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~el  458 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVCEL  458 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEeeec
Confidence            999999999999983    33333333322111   13446789999999999999999999998776 544443

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=5.7e-20  Score=193.64  Aligned_cols=327  Identities=13%  Similarity=0.275  Sum_probs=229.9

Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC--EEEEEECCCcEEEE
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKIL  645 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~iw  645 (1113)
                      ++.|| .+.+.++..+|.|.+|++|+.||+|+||.+.+|+++..+...+   .|.|++|+|.+.  .|+++.. ..+.|.
T Consensus       395 vyrGH-tg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~---~I~~vaw~P~~~~~vLAvA~~-~~~~iv  469 (733)
T KOG0650|consen  395 VYRGH-TGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS---EIRSVAWNPLSDLCVLAVAVG-ECVLIV  469 (733)
T ss_pred             eEecc-CCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc---eeEEEEecCCCCceeEEEEec-CceEEe
Confidence            34444 4478888899999999999999999999999999999998765   599999999654  4555444 346666


Q ss_pred             EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258          646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  725 (1113)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  725 (1113)
                      +..-|.+...   +........          .                                      -.-...++.
T Consensus       470 np~~G~~~e~---~~t~ell~~----------~--------------------------------------~~~~~p~~~  498 (733)
T KOG0650|consen  470 NPIFGDRLEV---GPTKELLAS----------A--------------------------------------PNESEPDAA  498 (733)
T ss_pred             Cccccchhhh---cchhhhhhc----------C--------------------------------------CCccCCccc
Confidence            5443311111   000000000          0                                      000112235


Q ss_pred             eeeEeccCCCCCC--cceecccCcccccCceEEEEEeCCCceEEEeecC---CeEEEEEccccccCCCCceeeeecCeec
Q 001258          726 SKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQLW  800 (1113)
Q Consensus       726 i~iw~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~lw  800 (1113)
                      +..|.-.......  .+..+     .|...|..+.|+..|.+|++...+   ..|.|+++.....               
T Consensus       499 ~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s---------------  558 (733)
T KOG0650|consen  499 VVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS---------------  558 (733)
T ss_pred             ceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc---------------
Confidence            5566544322211  12222     277899999999999999988774   5677776653211               


Q ss_pred             CCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec
Q 001258          801 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  880 (1113)
Q Consensus       801 ~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~  880 (1113)
                             . ..+.  ...+.|.++.|+|...+|++++...|+|||+..+..++.+......|..++.+| .|.-|+.|+.
T Consensus       559 -------Q-~PF~--kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~  627 (733)
T KOG0650|consen  559 -------Q-SPFR--KSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSY  627 (733)
T ss_pred             -------c-Cchh--hcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecC
Confidence                   0 1111  146678999999999999999999999999999888888887888899999999 8888899999


Q ss_pred             CCcEEEEEccc-ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258          881 DSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  959 (1113)
Q Consensus       881 dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  959 (1113)
                      |+.++.||+.- .+..++++.|...|++++|++.=.+++||+.||++.|+.-.-........+.+               
T Consensus       628 d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV---------------  692 (733)
T KOG0650|consen  628 DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV---------------  692 (733)
T ss_pred             CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE---------------
Confidence            99999999975 46778899999999999999999999999999999998532211100000000               


Q ss_pred             EccCCcEEEEEcCCeEEEEeCCccceeeccccCCC----CCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          960 FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       960 ~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h----~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                                               .+..+  .+|    ...|....|.|..-+|++++.||+|++|.
T Consensus       693 -------------------------PlK~L--~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  693 -------------------------PLKRL--RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             -------------------------eeeec--cCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence                                     00111  133    34588889999999999999999999983

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.1e-19  Score=174.66  Aligned_cols=259  Identities=14%  Similarity=0.237  Sum_probs=194.7

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  433 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  433 (1113)
                      +|.+-|.|+.|.+.|++ +|+++.|++|.|||......--..               ....+.|.+.|..+.|.+  -|+
T Consensus        11 ~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfGq   74 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFGQ   74 (361)
T ss_pred             CCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCccccc
Confidence            48999999999999997 999999999999997544322110               113568999999999977  699


Q ss_pred             eEEEEeCCCeEEEEEcc------CCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee-----
Q 001258          434 LFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-----  502 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-----  502 (1113)
                      .+|+++.|+++.||.-.      .+.......++......|++|.|.|....+.+++++.||.+|||+......+     
T Consensus        75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L  154 (361)
T KOG2445|consen   75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL  154 (361)
T ss_pred             eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence            99999999999999752      1223334456777888999999999987779999999999999987654322     


Q ss_pred             -eEee-------ccCcCEEEEeeeecCCc-eEEEEEecC-----CcEEEEEcCCCCC----eeeeeCCCCceEEEEEccC
Q 001258          503 -YIFE-------GHEAPVYSVCPHHKENI-QFIFSTALD-----GKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSAD  564 (1113)
Q Consensus       503 -~~~~-------~h~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~  564 (1113)
                       +.++       .+..+-.|+.|+++.-. .+|+.|+.+     +.++||.......    ..++..+..+|+.++|.|+
T Consensus       155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn  234 (361)
T KOG2445|consen  155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN  234 (361)
T ss_pred             hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence             2222       35667788888865432 466666655     4789998766542    2356778889999999997


Q ss_pred             CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-----------------eEEEEc-cCCCCCCcCeEEE
Q 001258          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIRF  626 (1113)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~~  626 (1113)
                      --+-+                 ..|++++.|| |+||++....                 .+..+. ..+|...|..+.|
T Consensus       235 ~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~w  296 (361)
T KOG2445|consen  235 IGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRW  296 (361)
T ss_pred             cCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEE
Confidence            43222                 2588899999 9999987311                 122222 3345568999999


Q ss_pred             CCCCCEEEEEECCCcEEEEEcC
Q 001258          627 NKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       627 s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      +-.|..|++.+.||.||+|...
T Consensus       297 NmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  297 NMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             eeeeeEEeecCCCceeeehhhh
Confidence            9999999999999999999653

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.5e-21  Score=209.15  Aligned_cols=244  Identities=13%  Similarity=0.219  Sum_probs=190.7

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCC---cceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeE
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS---RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  435 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  435 (1113)
                      .+..|.|+.--..+|||++..|.|.+||+..   .+.+                   ..+..|+..|++++|++ ...+|
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l-------------------~~f~EH~Rs~~~ldfh~tep~il  149 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLL-------------------TVFNEHERSANKLDFHSTEPNIL  149 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhh-------------------hHhhhhccceeeeeeccCCccEE
Confidence            4566777765555899999999999999986   2222                   25889999999999999 67788


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYS  514 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~~  514 (1113)
                      ++||.||+|++||++..+...   ++.+....|.+|+|+|...+ .|+++.+.|.+++||++.. ++...+..|.++|.|
T Consensus       150 iSGSQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c  225 (839)
T KOG0269|consen  150 ISGSQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC  225 (839)
T ss_pred             EecCCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence            999999999999999877554   67788999999999997665 8999999999999999864 566788999999999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      +.|+|  ++.+|+|||.|+.|+|||+.+........ ....++..+.|-|+.+                    ..|++++
T Consensus       226 ~nwhP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~--------------------~hLAtcs  283 (839)
T KOG0269|consen  226 LNWHP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARS--------------------YHLATCS  283 (839)
T ss_pred             EeecC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCcc--------------------chhhhhh
Confidence            99987  55899999999999999998655433322 2334566677776654                    2356554


Q ss_pred             --cCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258          594 --DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       594 --~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                        .|-.|+|||++..- +..++..|  ...++.++|.. |...+.+++.||+|..-...+.
T Consensus       284 mv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  284 MVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence              58899999997543 34555544  55788999976 5678889999998865544444

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=3.8e-19  Score=179.53  Aligned_cols=172  Identities=20%  Similarity=0.234  Sum_probs=141.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ...+|..+.|.+++...+|||+.|..|+||.++.++.-..          .........|..|...|+++.|+|+|..||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~----------~~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG----------DMKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC----------ceeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            3578999999998875699999999999999876543220          001111236889999999999999999999


Q ss_pred             EEeCCCeEEEEEcc--------C-----CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          437 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       437 s~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      +|+++|.|.+|...        +     .+.......+.+|...|..++|+|++.  ++++++.|.++++||+..|..+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999876        3     222334457889999999999999999  89999999999999999999999


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      .+.+|...|..++|.+-.  +++++-+.|...+.+.+..
T Consensus       160 ~~~dh~~yvqgvawDpl~--qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWDPLN--QYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             eccccccccceeecchhh--hhhhhhccCcccceeeeee
Confidence            999999999999987654  7999999998666665543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=3.3e-17  Score=191.47  Aligned_cols=371  Identities=25%  Similarity=0.421  Sum_probs=268.8

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc-eeEeeeeeeeccCCCCcccccccccCCC-cceEEEEE-c
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S  429 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s  429 (1113)
                      ....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ...                   .+.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence            34569999999999999995 8888899999999998876 332                   123322 46777777 8


Q ss_pred             CCCC-eEEEEeC-CCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEe
Q 001258          430 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       430 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~  505 (1113)
                      +++. +++..+. |+.+.+|+... .....   .+..|...|..++|+|++.  ++++++. |+.+++|++..+..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 99999999997 44333   6789999999999999999  6777775 999999999999999999


Q ss_pred             eccCcCEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          506 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      .+|...|.+++|+  +++. ++++++.|+.|++||........ .+..+.... ..                     .|+
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~---------------------~~~  250 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VS---------------------SFS  250 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eE---------------------eEC
Confidence            9999999999987  4444 55666999999999877444433 233333322 11                     455


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                      +++..+++++.++.+++|+...... ...+.  .+...+.++.|.|++..+++++.|+.+.+|+..+.. ......    
T Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~----  323 (466)
T COG2319         251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLS--GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT----  323 (466)
T ss_pred             CCCCEEEEecCCCcEEEeeecCCCcEEEEEe--cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence            5555688999999999999987665 44442  335578999999988888889999889999765541 110000    


Q ss_pred             cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258          663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  742 (1113)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  742 (1113)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (466)
T COG2319         324 --------------------------------------------------------------------------------  323 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258          743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  822 (1113)
Q Consensus       743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~  822 (1113)
                          ...                                                                   |...+.
T Consensus       324 ----~~~-------------------------------------------------------------------~~~~~~  332 (466)
T COG2319         324 ----LKG-------------------------------------------------------------------HEGPVS  332 (466)
T ss_pred             ----ecc-------------------------------------------------------------------cCCceE
Confidence                000                                                                   222334


Q ss_pred             EEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EecCCcEEEEEcccceeeeeec
Q 001258          823 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~-g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .+.+.+++..++.+ . |+.+.+|++............. .+..+.+++ + ..+.. +..++.+.+|+...........
T Consensus       333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (466)
T COG2319         333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHS-NVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD  409 (466)
T ss_pred             EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCc-eEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence            44442222334443 2 5667777777665222222222 278888988 6 55554 7899999999999888777666


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      .+...+....+++++..+++++.++++++|+..+
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            5547899999999999999999999999999877

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=5.5e-20  Score=187.74  Aligned_cols=263  Identities=13%  Similarity=0.162  Sum_probs=193.8

Q ss_pred             CcEEEEEcCC-------CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcc------cccccccCCCcceEEE
Q 001258          360 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP------LQAALVKDPGVSVNRV  426 (1113)
Q Consensus       360 ~V~~~~~spd-------g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~h~~~V~~l  426 (1113)
                      ...|++|...       |+ ++|.|+.|-.|.|||+.-...+.    ....+++....      .......+|++.|.++
T Consensus       175 fPLC~ewld~~~~~~~~gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~L  249 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLAL  249 (463)
T ss_pred             cchhhhhhhcCCCCCCCcc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHH
Confidence            3356666433       56 59999999999999986432221    01111100000      1112345899999999


Q ss_pred             EEcCC-CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258          427 IWSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       427 ~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  505 (1113)
                      +|+.+ ...||+||.|.+|++||+.++++..   ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+.......-
T Consensus       250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~  325 (463)
T KOG0270|consen  250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKE  325 (463)
T ss_pred             HhccccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCce
Confidence            99985 5578999999999999999999776   67789999999999999887 8999999999999999854333322


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      -...+.|..++|.+... ..++++..||+|+-+|++.. ++..++..|...|.+++++..-.                  
T Consensus       326 wk~~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p------------------  386 (463)
T KOG0270|consen  326 WKFDGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP------------------  386 (463)
T ss_pred             EEeccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC------------------
Confidence            22567899999987654 67888899999999999987 67778899999999988877654                  


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEECCCcEEEEEcCCCcc
Q 001258          585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                        +.+++++.|+.|++|++............-......|.++.|+- -+++.|+..+.+++||+.+...
T Consensus       387 --~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  387 --GLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             --cceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence              35888999999999998754432222211112335677777754 4677788888899999988743

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.7e-20  Score=200.47  Aligned_cols=269  Identities=13%  Similarity=0.184  Sum_probs=199.4

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG  436 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la  436 (1113)
                      .....++...++-..++++|  .....||.+........  ..+.+-..     +     .-.-.+..|.|+. +.++||
T Consensus        39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~~--~~~~~k~k-----q-----n~~~S~~DVkW~~~~~NlIA  104 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSEK--CNHRFKTK-----Q-----NKFYSAADVKWGQLYSNLIA  104 (839)
T ss_pred             ccccceEeecCCcceeEEec--ccceeeEeeCcccCCcc--eeeecccc-----c-----ceeeehhhcccccchhhhhe
Confidence            45677888888887755544  33566666654322110  01110000     0     0012455677876 788999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +++..|.|.+||+.....-+....|..|...|+++.|++.... +|++||.||+|++||++..+-..++.+....|..+.
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK  183 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence            9999999999999873222233368899999999999998887 899999999999999999999999999999999999


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      |++.. +..++++...|.+.+||++... ....+..|.++|.++.|+|++.                     +|++|+.|
T Consensus       184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~---------------------~lATGGRD  241 (839)
T KOG0269|consen  184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNRE---------------------WLATGGRD  241 (839)
T ss_pred             eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCc---------------------eeeecCCC
Confidence            99876 5799999999999999998754 3456778888777777777554                     89999999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEE--CCCcEEEEEcCCCccceeccccccccc
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDA  664 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1113)
                      +.|+|||+.+.+.......+. ..+|.++.|-|+.. .|++++  .|..|+|||+.....+...+..|...+
T Consensus       242 K~vkiWd~t~~~~~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~v  312 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSV  312 (839)
T ss_pred             ccEEEEeccCCCccceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccc
Confidence            999999998765433332222 35789999999765 455554  477899999998877778887776643

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=6e-20  Score=179.96  Aligned_cols=258  Identities=19%  Similarity=0.272  Sum_probs=195.5

Q ss_pred             CCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-C
Q 001258          357 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G  432 (1113)
Q Consensus       357 h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g  432 (1113)
                      |...-..++|+-|   |.-++|+|+.-|.|+|.|+.+++...                   .+.+|.+.|+.+.|.|+ .
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence            6677788888754   44578888899999999999988765                   37899999999999995 5


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee----------
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----------  502 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----------  502 (1113)
                      ++++++|.|.+|++|++++..++..+..+.+|.+.|.++.|+.+|.  +++++|.|.++++|++...+..          
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            7899999999999999999999988888889999999999999999  7999999999999999732110          


Q ss_pred             ---------------e---EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEE-EEc
Q 001258          503 ---------------Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTM-AYS  562 (1113)
Q Consensus       503 ---------------~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~-~~s  562 (1113)
                                     .   +-.-|...|.|+.|..    +++++-+-++.|.+|..-.. +............+-+ .|.
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence                           0   1124777788877642    58999999999999976221 1111111111111100 000


Q ss_pred             cCCCeEEeccccCceeEE--EecCCCCEEEEEecCCcEEEEECCCCce--EEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258          563 ADGTRTYQGFRKRSLGVV--QFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       563 ~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                               .....++.+  +|+|-++.|+.|...|.|++||++...+  ..++........|...+|+.|+.+|+...+
T Consensus       303 ---------~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcd  373 (385)
T KOG1034|consen  303 ---------YPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCD  373 (385)
T ss_pred             ---------cCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeC
Confidence                     111234443  5567788999999999999999987665  333444444568999999999999999999


Q ss_pred             CCcEEEEEcC
Q 001258          639 DNGIKILATS  648 (1113)
Q Consensus       639 dg~i~iwd~~  648 (1113)
                      |++|.-||..
T Consensus       374 d~~Vwrwdrv  383 (385)
T KOG1034|consen  374 DGTVWRWDRV  383 (385)
T ss_pred             CCcEEEEEee
Confidence            9999999853

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=2.8e-19  Score=178.45  Aligned_cols=175  Identities=24%  Similarity=0.396  Sum_probs=145.0

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      .+.+...-+|..+-++++|||--.--|++|..-+.|++|...+|.-...                ..-+.+|+..|..++
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLq  264 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQ  264 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------Cccccccccchhhhc
Confidence            3444444559999999999993222388998899999999988653321                113677999999999


Q ss_pred             EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---Cceee
Q 001258          428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQY  503 (1113)
Q Consensus       428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~  503 (1113)
                      ||| ....||+||.||+|+|||++.+.....+ ..+.|.+.|+.|.|+..-.  +|++|+.||+++|||++.   ++++.
T Consensus       265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA  341 (440)
T KOG0302|consen  265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVA  341 (440)
T ss_pred             cCCccCceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcce
Confidence            999 4568899999999999999998544333 2489999999999998888  899999999999999984   67889


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      .|+.|..+|+++.|+|..+ ..|++++.|.+|.+||+..
T Consensus       342 ~fk~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  342 TFKYHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             eEEeccCCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence            9999999999999998776 5888899999999999864

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=5.2e-19  Score=173.42  Aligned_cols=264  Identities=16%  Similarity=0.253  Sum_probs=179.4

Q ss_pred             cCCCCcEEEEEcC----CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          356 NQGSSPMSMDFHP----VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       356 ~h~~~V~~~~~sp----dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      +|+.+|..++|++    +...++|+.+ ...+.||+......+.  .++            ...-..|...-..++|+-|
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir--~lq------------~y~D~d~~Esfytcsw~yd  100 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIR--LLQ------------SYADEDHDESFYTCSWSYD  100 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCcccee--eee------------eccCCCCCcceEEEEEEec
Confidence            4889999999984    3333566554 5688899886543221  111            1122357778888999875


Q ss_pred             ----CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe--
Q 001258          432 ----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  505 (1113)
Q Consensus       432 ----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--  505 (1113)
                          .-+||.|+.-|.|+|.|+.++++.+   .+.+|...|+.+.|.|+..+ +++++|.|.+|++|++++..|+..|  
T Consensus       101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG  176 (385)
T KOG1034|consen  101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG  176 (385)
T ss_pred             CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence                3478999999999999999998776   68899999999999999987 8999999999999999999999887  


Q ss_pred             -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE-----------E--ec
Q 001258          506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT-----------Y--QG  571 (1113)
Q Consensus       506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~-----------~--~~  571 (1113)
                       .||.+.|.++.|+.+  |.+|++++.|.+|++|++...+-...++      .+..|++++...           +  ..
T Consensus       177 ~egHrdeVLSvD~~~~--gd~i~ScGmDhslk~W~l~~~~f~~~lE------~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  177 VEGHRDEVLSVDFSLD--GDRIASCGMDHSLKLWRLNVKEFKNKLE------LSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             cccccCcEEEEEEcCC--CCeeeccCCcceEEEEecChhHHhhhhh------hhcccCCCCccCcCCccccccccccccc
Confidence             579999999998754  4699999999999999998533222111      112333333210           0  00


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEEC-CCCceEEE-------------EccCCCCCCcCe--EEECCCCCEEEE
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTS-------------IDADGGLPASPR--IRFNKDGCLLAV  635 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~-------------~~~~~~~~~v~~--~~~s~~~~~l~~  635 (1113)
                      -+...+.++.|-  |+++++-+-++.|..|.. +-++.+..             +....  ..+.-  .+|.|-++.||.
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~--c~iWfirf~~d~~~~~la~  324 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM--CDIWFIRFAFDPWQKMLAL  324 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCc--cceEEEEEeecHHHHHHhh
Confidence            011122222222  467888888999999987 22222111             11111  12222  344555677777


Q ss_pred             EECCCcEEEEEcCCC
Q 001258          636 STNDNGIKILATSDG  650 (1113)
Q Consensus       636 ~~~dg~i~iwd~~~~  650 (1113)
                      |...|.+.+||+...
T Consensus       325 gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  325 GNQSGKVYVWDLDNN  339 (385)
T ss_pred             ccCCCcEEEEECCCC
Confidence            777777777777655

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=4e-19  Score=181.53  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=157.5

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeee------------------eecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  492 (1113)
                      -|+|+|.|..|..|.|||+.--..+.+...                  -.+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            478999999999999999863222222112                  2379999999999998877 899999999999


Q ss_pred             EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      +||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...      
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------  342 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------  342 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence            99999999999999999999999998865 47999999999999999985333222222234456666665543      


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCC-ceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                    ..++++..||+|+-+|++.. +++.++..|..  .|.++++++ ...++++++.|+.+++|++...
T Consensus       343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence                          35778889999999999875 88889888854  899999998 4568999999999999998654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=1.6e-18  Score=177.56  Aligned_cols=312  Identities=12%  Similarity=0.152  Sum_probs=222.8

Q ss_pred             CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      +-......+-+.++|++++|+|..+..++++|+.-|.|-+||+.+.+    ....+..|..+|.++.|+|...       
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~-------  247 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT-------  247 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh-------
Confidence            33444556668899999999999988899999999999999996332    3445667777888888887654       


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                                   ..+++.+.||+|+.-|++.+.....+........+.++.|+.+...++.++.=|.+.+||..++...
T Consensus       248 -------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~  314 (498)
T KOG4328|consen  248 -------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE  314 (498)
T ss_pred             -------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence                         4689999999999999987655444443223345678888888888888888889999999988665


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ...+.-|...+...      ++.|..                                  ...+++++.|++.+|||+..
T Consensus       315 ~~~~~lh~kKI~sv------~~NP~~----------------------------------p~~laT~s~D~T~kIWD~R~  354 (498)
T KOG4328|consen  315 YENLRLHKKKITSV------ALNPVC----------------------------------PWFLATASLDQTAKIWDLRQ  354 (498)
T ss_pred             chhhhhhhccccee------ecCCCC----------------------------------chheeecccCcceeeeehhh
Confidence            66666665544332      333332                                  56789999999999999987


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                      ....... .+..  ..|...|.++.|||++-.|++.+.|..|+|||..-              +.-|+...+....... 
T Consensus       355 l~~K~sp-~lst--~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~Hn~~-  416 (498)
T KOG4328|consen  355 LRGKASP-FLST--LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPHNNR-  416 (498)
T ss_pred             hcCCCCc-ceec--ccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeeccCc-
Confidence            6554431 1112  34899999999999988899999999999998630              1112222222222111 


Q ss_pred             CCCCCC--CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeE-EEEecCCCcEEEEEecCCcEEEEE
Q 001258          814 DSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       814 ~~~~~~--~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~-l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                         +..  ...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|.+..++|-|...|.|+||-
T Consensus       417 ---t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft  493 (498)
T KOG4328|consen  417 ---TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT  493 (498)
T ss_pred             ---ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence               111  123468999999999998 67899999998887777543332 4544 478994444666667788999886


Q ss_pred             cc
Q 001258          889 VR  890 (1113)
Q Consensus       889 ~~  890 (1113)
                      -+
T Consensus       494 ~k  495 (498)
T KOG4328|consen  494 NK  495 (498)
T ss_pred             cC
Confidence            43

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=9.1e-19  Score=180.30  Aligned_cols=292  Identities=12%  Similarity=0.179  Sum_probs=214.4

Q ss_pred             eeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeee
Q 001258          717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV  795 (1113)
Q Consensus       717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  795 (1113)
                      +..++....+++||.........+....     ....+.++.|......+ +..+.|..+++|.-...            
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~------------   67 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK------------   67 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccCC------------
Confidence            4445556789999998766555544332     22348888888776532 33445788888864321            


Q ss_pred             cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001258          796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  874 (1113)
Q Consensus       796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~  874 (1113)
                              ++.+......   ....-.|++......|+++|+ .++|+|||++...+.+.+..|...|+++.+.- ...+
T Consensus        68 --------~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey  135 (673)
T KOG4378|consen   68 --------TPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY  135 (673)
T ss_pred             --------CCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence                    1221111111   122445666656668999998 89999999998778888999999999999998 6789


Q ss_pred             EEEEecCCcEEEEEcccceeeeeeccccc-CeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          875 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       875 la~g~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      ||+++..|.|.|..+.++.....|...++ .|.-|.|++..++ |.+++.+|.|.+||+.....    .......|..  
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~HsA--  209 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHSA--  209 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhccC--
Confidence            99999999999999999887777765434 4558999987765 56889999999999987433    2333444443  


Q ss_pred             CCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc-e
Q 001258          953 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1029 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~-~ 1029 (1113)
                       +...++|+|....|++  |.|.+|.+||.........+..   ..+...++|+++|.+|++|+..|.|..||+...+ .
T Consensus       210 -P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  210 -PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             -CcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence             6789999998776665  7999999999987776666653   6799999999999999999999999999997543 4


Q ss_pred             eeecCCCcccCCCcccCccceEEEEeC
Q 001258         1030 RCRINPSAYLPAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus      1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p 1056 (1113)
                      +..+.       .|...|+.  ++|-|
T Consensus       286 v~v~s-------ah~~sVt~--vafq~  303 (673)
T KOG4378|consen  286 VAVRS-------AHDASVTR--VAFQP  303 (673)
T ss_pred             ceEee-------ecccceeE--EEeee
Confidence            44444       77778886  55555

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.82  E-value=3.6e-16  Score=182.66  Aligned_cols=369  Identities=22%  Similarity=0.392  Sum_probs=270.8

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCc-CEEEEeeeecCCce-EEEEEec-CCcE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKI  535 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i  535 (1113)
                      .+..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence            3567999999999999999  78888899999999998887 6777776443 77777764 55555 5555444 9999


Q ss_pred             EEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec-CCcEEEEECCCCceEEEEc
Q 001258          536 KAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSID  613 (1113)
Q Consensus       536 ~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~  613 (1113)
                      .+|+... ......+..+...+..+++++++.                     .+++++. ++.+++|+...+..+..+.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---------------------LLASGSSLDGTIKLWDLRTGKPLSTLA  195 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCC---------------------EEEecCCCCCceEEEEcCCCceEEeec
Confidence            9999987 566666777777777777777665                     5777775 9999999999888888887


Q ss_pred             cCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcCCCcccee-ccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258          614 ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  691 (1113)
Q Consensus       614 ~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1113)
                      .+  ...+.+++|+|++. ++++++.|+.|++||...+ .... .+.+                                
T Consensus       196 ~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~--------------------------------  240 (466)
T COG2319         196 GH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG--------------------------------  240 (466)
T ss_pred             cC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC--------------------------------
Confidence            64  55799999999998 5555589999999965533 1111 0000                                


Q ss_pred             ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec
Q 001258          692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  771 (1113)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~  771 (1113)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (466)
T COG2319         241 --------------------------------------------------------------------------------  240 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCc
Q 001258          772 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  850 (1113)
Q Consensus       772 dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~  850 (1113)
                                                                   |.... ...|++++.++++++ |+.+++|++....
T Consensus       241 ---------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  274 (466)
T COG2319         241 ---------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSS  274 (466)
T ss_pred             ---------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence                                                         11221 115555665555554 6777777776544


Q ss_pred             e-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec--ccccCeEEEEEcCCCCEEEEE-eCCCcE
Q 001258          851 T-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQL  926 (1113)
Q Consensus       851 ~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~L~s~-s~D~~v  926 (1113)
                      . ...+..|...+.++.|+| ++..+++++.|+.+.+|+..+........  .|...+..+.|.+++..++.+ ..|+.+
T Consensus       275 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         275 SLLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             cEEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence            3 333456778899999999 77778779999999999998877766665  888889999994333556655 688999


Q ss_pred             EEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeeccccCCCCCCeeEEEEC
Q 001258          927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus       927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
                      .+|++....     ........    ..+..+.+++ ...+..  ..++.+.+|+.............  ...+....++
T Consensus       354 ~~~~~~~~~-----~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  421 (466)
T COG2319         354 RLWDLRTGK-----PLKTLEGH----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFS  421 (466)
T ss_pred             EeeecCCCc-----eeEEecCC----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEEC
Confidence            999998854     11111111    1267888888 533333  47889999999988887776521  1789999999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCC
Q 001258         1005 CDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus      1005 ~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      +++..+++++.++.+++|+..+
T Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         422 PDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCcEEEEecCCCcEEEEeccC
Confidence            9999999999999999999988

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=2.8e-17  Score=171.02  Aligned_cols=506  Identities=14%  Similarity=0.152  Sum_probs=293.7

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      .|...|.|+.|+.+.. ++.+ +.|..+.+|.-.+.........     .....+     -..|-++ .+..=-.....|
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~-----p~df~p-----t~~h~~~-rs~~~g~~~d~~   78 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKL-----PDDFVP-----TDMHLGG-RSSGGGKGSDTL   78 (737)
T ss_pred             ccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhC-----CcccCC-----ccccccc-cccCCCCCcceE
Confidence            5777888999999887 3444 4566666665444332221000     000000     0011000 000000134578


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      +.++.||.+.|.+-.. +.-+   .+.+|.+.|.+-.|+|||.  -|++++.||.|+||. ++|....++.....+|.|+
T Consensus        79 ~i~s~DGkf~il~k~~-rVE~---sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSA-RVER---SISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             EEEcCCceEEEecccc-hhhh---hhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            8889999998877443 3222   5789999999999999999  699999999999999 8888777777778899999


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +|.|+.+ +.+++.+  +.+.+=-+.....+..+..|.+-|.++.|++..                     +.+++|++|
T Consensus       152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---------------------~lI~sgGED  207 (737)
T KOG1524|consen  152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---------------------NIIASGGED  207 (737)
T ss_pred             EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc---------------------cceeecCCc
Confidence            9988765 4666554  345554555555666666776666666655544                     479999999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  675 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1113)
                      -..++||. .|..+..-..|.  .+|++++|+|+ +.++.++. +++|+=                              
T Consensus       208 ~kfKvWD~-~G~~Lf~S~~~e--y~ITSva~npd-~~~~v~S~-nt~R~~------------------------------  252 (737)
T KOG1524|consen  208 FRFKIWDA-QGANLFTSAAEE--YAITSVAFNPE-KDYLLWSY-NTARFS------------------------------  252 (737)
T ss_pred             eeEEeecc-cCcccccCChhc--cceeeeeeccc-cceeeeee-eeeeec------------------------------
Confidence            99999996 456665555554  47999999999 56665554 333310                              


Q ss_pred             ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceE
Q 001258          676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  755 (1113)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~  755 (1113)
                                                                                              ....+.|.
T Consensus       253 ------------------------------------------------------------------------~p~~GSif  260 (737)
T KOG1524|consen  253 ------------------------------------------------------------------------SPRVGSIF  260 (737)
T ss_pred             ------------------------------------------------------------------------CCCccceE
Confidence                                                                                    01346788


Q ss_pred             EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      .++||+||..+++++..|.+.+-..-.                                   ..-+       -+.+=++
T Consensus       261 nlsWS~DGTQ~a~gt~~G~v~~A~~ie-----------------------------------q~l~-------~~n~~~t  298 (737)
T KOG1524|consen  261 NLSWSADGTQATCGTSTGQLIVAYAIE-----------------------------------QQLV-------SGNLKAT  298 (737)
T ss_pred             EEEEcCCCceeeccccCceEEEeeeeh-----------------------------------hhhh-------hccceeE
Confidence            999999999999999998876522110                                   0000       0011111


Q ss_pred             E-eCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258          836 A-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       836 ~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  914 (1113)
                      . ....|.+-|+.++.+ ..++ ....+...+..-  + +|+++. ...|++|.-........+.+....+.-+.-+. .
T Consensus       299 ~~~r~~I~vrdV~~~v~-d~LE-~p~rv~k~sL~Y--~-hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~e-k  371 (737)
T KOG1524|consen  299 SKSRKSITVRDVATGVQ-DILE-FPQRVVKFSLGY--G-HLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE-K  371 (737)
T ss_pred             eeccceEEeehhhhhHH-HHhh-Cccceeeeeece--e-EEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhhh-h
Confidence            1 244566777766544 2222 344566665543  3 344333 24688887655444444444443332222111 1


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--E-cCCeEEEEeC-Cccceeeccc
Q 001258          915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFET-TKLECVKQWV  990 (1113)
Q Consensus       915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~-~d~~v~v~d~-~~~~~~~~~~  990 (1113)
                      .+++  ....++.++..+.......    .+++...  .....-..|-....|+.  . ....+.+||. .+|+....-.
T Consensus       372 ~fli--~dgsSi~lytyegR~~~np----~~Pg~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk  443 (737)
T KOG1524|consen  372 YFLI--LDGSSIWLYTYEGRLHLNP----RYPGSQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGK  443 (737)
T ss_pred             heEE--ecCcEEEEEEecCceecCC----CCCCccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence            2222  2233455555444211000    0111100  11222233444445555  2 3456788998 7777654433


Q ss_pred             cCCCCCCeeEEEECC----CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258          991 PRESSAPITHATFSC----DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus       991 ~~~h~~~v~~l~~s~----dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      .-.|...|..++...    +.+.++--..++.++|-.+.+.-.-.++.     ..|  .-|..  ++|.  |-.-+++|-
T Consensus       444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~-----KiG--TmVht--Lawn--dttNiLcgl  512 (737)
T KOG1524|consen  444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIY-----KIG--TMVHT--LAWN--DTTNILCGL  512 (737)
T ss_pred             ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhh-----hhh--hhhhh--hhhc--cccceeeee
Confidence            224567777777754    55667777777777776654322111111     112  23443  6776  445678888


Q ss_pred             CCCcEEEEeccCCC
Q 001258         1067 SDGGVHVFEPLESE 1080 (1113)
Q Consensus      1067 ~Dg~v~vW~~~~~~ 1080 (1113)
                      .|+++.||-.++.-
T Consensus       513 qDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  513 QDTCFSVWYYPNEV  526 (737)
T ss_pred             ccceEEEEEcCCcc
Confidence            99999999887643

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=1.8e-18  Score=178.16  Aligned_cols=294  Identities=14%  Similarity=0.213  Sum_probs=211.7

Q ss_pred             EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE--ECCCcEEEEEcCCCccceeccccccccccc
Q 001258          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASR  666 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  666 (1113)
                      |..++....+++||....+....+..+.....+.++.|+.... |+++  +.|..+++|.-......+....        
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~--------   75 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVR--------   75 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceee--------
Confidence            4455556689999998877776666555556789999998664 4433  4567788885322100000000        


Q ss_pred             cCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccC
Q 001258          667 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP  746 (1113)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~  746 (1113)
                                                                                      ..              
T Consensus        76 ----------------------------------------------------------------k~--------------   77 (673)
T KOG4378|consen   76 ----------------------------------------------------------------KL--------------   77 (673)
T ss_pred             ----------------------------------------------------------------cc--------------
Confidence                                                                            00              


Q ss_pred             cccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258          747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  826 (1113)
Q Consensus       747 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~  826 (1113)
                         ....-.|++......++++++..++|+|||+..                       +++...+.+  |...|+++.+
T Consensus        78 ---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------------------kl~hr~lkd--h~stvt~v~Y  129 (673)
T KOG4378|consen   78 ---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRA-----------------------KLIHRFLKD--HQSTVTYVDY  129 (673)
T ss_pred             ---ccchHHHHhhhhcceeeeccCcCceeeehhhHH-----------------------HHHhhhccC--CcceeEEEEe
Confidence               011122333334447789999999999888752                       233333444  8999999999


Q ss_pred             ecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-eccccc
Q 001258          827 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSK  903 (1113)
Q Consensus       827 s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~  903 (1113)
                      +....+||+++ .|.|.|..+.++....+|....+ .+.-+.|+|....+|.+++.+|.|.+||+.....+.. ...|+.
T Consensus       130 N~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA  209 (673)
T KOG4378|consen  130 NNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA  209 (673)
T ss_pred             cCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccC
Confidence            99999999999 68899999999888777765433 4668999995566888999999999999987666544 467999


Q ss_pred             CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCC
Q 001258          904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT  981 (1113)
Q Consensus       904 ~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~  981 (1113)
                      +...++|+|.. .+||+.+.|..|.+||+......    ......     .+...++|+++|.+|++| ..|.|..||++
T Consensus       210 P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~----~~l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R  280 (673)
T KOG4378|consen  210 PCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST----DRLTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMR  280 (673)
T ss_pred             CcCcceecCCccceEEEecccceEEEeeccccccc----ceeeec-----CCcceeeecCCceEEEeecCCceEEEEecc
Confidence            99999999854 67889999999999999863321    111122     357899999999999996 88999999998


Q ss_pred             ccceeeccccCCCCCCeeEEEECCCC
Q 001258          982 KLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus       982 ~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
                      ..+..-... ..|...|++++|-+..
T Consensus       281 ~~k~Pv~v~-sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  281 STKAPVAVR-SAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCCCceEe-eecccceeEEEeeecc
Confidence            665433322 3788899999997654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.81  E-value=6.6e-18  Score=170.72  Aligned_cols=162  Identities=14%  Similarity=0.219  Sum_probs=132.3

Q ss_pred             cceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCc------eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          421 VSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGD------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       421 ~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~------~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .+|..+.|.+++. .||||+.|..|+||.+..+.      .+.....|..|...|++|.|+|+|.  +++||+++|.|.+
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge--lLASg~D~g~v~l   91 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE--LLASGGDGGEVFL   91 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC--eeeecCCCceEEE
Confidence            4899999999877 99999999999999887532      3445567889999999999999999  8999999999999


Q ss_pred             EeCC--------C--------CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceE
Q 001258          494 WDAT--------N--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT  557 (1113)
Q Consensus       494 wd~~--------~--------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  557 (1113)
                      |-..        +        -...+.+.+|...|..++|+++  +.++++++.|..+++||+..+.....+..|.+.+.
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d--~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq  169 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD--SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ  169 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCC--CceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence            9865        2        1223466789999999998764  47999999999999999999888888888888888


Q ss_pred             EEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  607 (1113)
Q Consensus       558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  607 (1113)
                      .++|.|-++                     ++++-+.|...+.+.+...+
T Consensus       170 gvawDpl~q---------------------yv~s~s~dr~~~~~~~~~~~  198 (434)
T KOG1009|consen  170 GVAWDPLNQ---------------------YVASKSSDRHPEGFSAKLKQ  198 (434)
T ss_pred             eeecchhhh---------------------hhhhhccCcccceeeeeeee
Confidence            877777666                     56676667666666554433

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.4e-19  Score=204.48  Aligned_cols=279  Identities=13%  Similarity=0.163  Sum_probs=212.1

Q ss_pred             ccCcccCCccccCCcccCCCCCCCCCCCCCCcceeEeccCCCCcEEEEEcCCCCe---EEEEEecCCcEEEEecCCccee
Q 001258          318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERL  394 (1113)
Q Consensus       318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~---ll~~gs~dg~i~iwd~~~~~~~  394 (1113)
                      ++.+.+|.++|.....              .-+....+.-..+-+.++|++.|..   +||.|..||.|.+||...-  +
T Consensus        38 ~~slEifeld~~~~~~--------------dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~  101 (1049)
T KOG0307|consen   38 SASLEIFELDFSDESS--------------DLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--I  101 (1049)
T ss_pred             ccccceeeecccCccc--------------cccccccccccccceeeeecccCCCccceeeccccCCceEEecchhh--c
Confidence            5667778777765431              1122233445677889999998876   6999999999999998752  0


Q ss_pred             EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeeee--ecccCCeeEE
Q 001258          395 VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDI  471 (1113)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~V~~v  471 (1113)
                      .          ..... .......|.+.|..++|++.+. +||+|+.||.|.|||+..-+.--   ++  ..-.+.|.++
T Consensus       102 ~----------~~~~~-~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen  102 A----------NASEE-VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCL  167 (1049)
T ss_pred             c----------CcchH-HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEe
Confidence            0          00111 1124678999999999999655 99999999999999998744221   22  1245689999


Q ss_pred             EEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc--CEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCC-C
Q 001258          472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA--PVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLG-S  545 (1113)
Q Consensus       472 ~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~-~  545 (1113)
                      +|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.+  .+..+.|+|+... .|++++. |+  .|.+||++... .
T Consensus       168 sWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP  245 (1049)
T KOG0307|consen  168 SWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSP  245 (1049)
T ss_pred             ccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCc
Confidence            99988776 799999999999999999988887776654  4678899998764 4555544 43  59999998654 3


Q ss_pred             eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258          546 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  625 (1113)
Q Consensus       546 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  625 (1113)
                      ...+..|...|.++.|++.+.                    .++++++.|+.|.+|+.++++.+..+...  ...+..+.
T Consensus       246 ~k~~~~H~~GilslsWc~~D~--------------------~lllSsgkD~~ii~wN~~tgEvl~~~p~~--~nW~fdv~  303 (1049)
T KOG0307|consen  246 LKILEGHQRGILSLSWCPQDP--------------------RLLLSSGKDNRIICWNPNTGEVLGELPAQ--GNWCFDVQ  303 (1049)
T ss_pred             hhhhcccccceeeeccCCCCc--------------------hhhhcccCCCCeeEecCCCceEeeecCCC--Ccceeeee
Confidence            456678888888888877664                    36899999999999999999999998764  35789999


Q ss_pred             ECCCC-CEEEEEECCCcEEEEEcCCC
Q 001258          626 FNKDG-CLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       626 ~s~~~-~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      |+|.. ..+++++.||.|.|+.+...
T Consensus       304 w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  304 WCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ecCCCcchhhhheeccceeeeeeecC
Confidence            99955 48899999999999998765

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.79  E-value=4.7e-17  Score=159.26  Aligned_cols=227  Identities=14%  Similarity=0.145  Sum_probs=168.6

Q ss_pred             CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC---CccEEEEecCCCEEEEEe
Q 001258          761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE---AVPCFALSKNDSYVMSAS  837 (1113)
Q Consensus       761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~---~v~~l~~s~~~~~l~~~s  837 (1113)
                      |+..++++.+.+.-|++||.-+                      |.+... +....|..   ...+++|+|||..|++|.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaft----------------------G~lraS-y~~ydh~de~taAhsL~Fs~DGeqlfaGy  177 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFT----------------------GKLRAS-YRAYDHQDEYTAAHSLQFSPDGEQLFAGY  177 (406)
T ss_pred             CccceeeeccccCceeeeeccc----------------------cccccc-hhhhhhHHhhhhheeEEecCCCCeEeecc
Confidence            6677788888888888887543                      322211 11111222   345799999999999999


Q ss_pred             CCeEEEEECC-CCceee---ee----cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEE
Q 001258          838 GGKISLFNMM-TFKTMA---TF----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  909 (1113)
Q Consensus       838 dg~i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  909 (1113)
                      ..+|++||+. .|....   ++    .+..+-|.|++|+|.+.+.+|+|+....+-||.-....++..+-+|.+.|+.|+
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence            9999999993 443221   11    223566899999998888999999999999999888899999999999999999


Q ss_pred             EcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc-ccee
Q 001258          910 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV  986 (1113)
Q Consensus       910 ~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~-~~~~  986 (1113)
                      |.+||+.|.+|+. |..|..||++......    -.+..|......-......|+|.+|+++ .||.|++||+++ +..+
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv----~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRDPV----YALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccchh----hhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            9999999999984 7789999998754432    2222222211122234556899999996 999999999998 6645


Q ss_pred             eccccCCCCCCeeEEEECCCCCEEEEEeCC
Q 001258          987 KQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1113)
Q Consensus       987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1016 (1113)
                      ..+.  .|...+..+++.|-=.++++++..
T Consensus       334 sv~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccc--cccccccceecCcccceeeeccCc
Confidence            5544  678999999999997777776643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=6.9e-18  Score=160.54  Aligned_cols=308  Identities=13%  Similarity=0.184  Sum_probs=198.7

Q ss_pred             ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCcee
Q 001258          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1113)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~  578 (1113)
                      .+...+++|.+.|++++|-.+   .+|++|..-|.|++|++.+......+. .+...|+.+..-|++.            
T Consensus         5 dP~fvLRp~~~~v~s~~fqa~---~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------   69 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQAN---ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------   69 (323)
T ss_pred             CCeeEeccccchheehhhccc---hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence            356677899999999997543   379999999999999999988887777 5566788888777765            


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-cEEEEEcCCCccceecc
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF  657 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~  657 (1113)
                                +.+-+.|+.+.+|++..+..+..-.     -.++++.|.+-.  +...+... ..-.++-+...+ .+..
T Consensus        70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~  131 (323)
T KOG0322|consen   70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ  131 (323)
T ss_pred             ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence                      8888999999999998766544322     134455554321  11111100 011111000000 0000


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      ++                                                             +..-.+++-+-.     
T Consensus       132 D~-------------------------------------------------------------g~~tqv~i~dd~-----  145 (323)
T KOG0322|consen  132 DG-------------------------------------------------------------GDTTQVQIADDS-----  145 (323)
T ss_pred             cc-------------------------------------------------------------CccceeEccCch-----
Confidence            00                                                             000001110000     


Q ss_pred             CcceecccCcccccCceEEEEEeC-CCc--eEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~-~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                               ..+..+.+.+..+.. ++.  .+++|.++|.+.+||+..++...+-.       +.|..      ....  
T Consensus       146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~-------~~~kv------~~~~--  201 (323)
T KOG0322|consen  146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP-------QSSKV------ESPN--  201 (323)
T ss_pred             ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc-------ccccc------ccch--
Confidence                     011223333333211 122  35677788999999998653211110       11111      1111  


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                      ..|..+|.++.+.+.-..=++|+ +..+..|+++.  +.+  ...+......+..+.+-| |++++|+++.|++||||+.
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence            13889999999987655555665 77888998863  322  222333455688899999 9999999999999999999


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      ++...+..++.|++.|++++|+||...+|.+|.|++|-+|++
T Consensus       281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999986

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=1.6e-17  Score=173.26  Aligned_cols=167  Identities=20%  Similarity=0.269  Sum_probs=129.9

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      +|.||.+.|+|++|+.+|.  +|++||+|-.+.|||.-..++++.+ .||...|.++.|.|..+..++++|..|..|+++
T Consensus        45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            6889999999999999999  8999999999999999988888776 689999999999999888999999999999999


Q ss_pred             EcCCCCC----------eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258          539 LYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  608 (1113)
Q Consensus       539 d~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  608 (1113)
                      |+...+.          ...+..|...|..++..|++.                    +.+.++++||+|+-+|++....
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph~  182 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPHV  182 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCcc
Confidence            9985322          122333444455555555443                    4688999999999999986321


Q ss_pred             E-EE-------EccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcC
Q 001258          609 L-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       609 ~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      - ..       .......-...|+..+| +..+|++|+.|-..++||..
T Consensus       183 c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  183 CNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             CCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            1 10       01111123457899999 56789999999999999963

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.78  E-value=2.3e-17  Score=161.61  Aligned_cols=405  Identities=15%  Similarity=0.157  Sum_probs=235.5

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE-eCC
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR  441 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d  441 (1113)
                      -++|||+|+| +|+.+. ..+.|-|.++-+..+.                    -.--+.|..+.|+.|.-+++.+ +.|
T Consensus        13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCCe-eeeeee-eEEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence            3679999997 887764 4888888877554331                    1113478889999998887664 788


Q ss_pred             CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC
Q 001258          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  521 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~  521 (1113)
                      +.|.+|++...+-..   .+.....++.+++|||||+. ++.+...|-.|.||.+.+.+.... .-....+..++|+  +
T Consensus        71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~--~  143 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFH--P  143 (447)
T ss_pred             ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEe-cccccCceeEEEC--C
Confidence            999999999877554   56777889999999999987 788888999999999988776442 2223445667765  4


Q ss_pred             CceEEEEEecCCcEEEEEcC---CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcE
Q 001258          522 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  598 (1113)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  598 (1113)
                      +|++.+..+.-...-...+.   .-.....+....-..+.+.|+|||                     +.++        
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg---------------------~~la--------  194 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG---------------------NWLA--------  194 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC---------------------cEEE--------
Confidence            56777776653211111111   001112223333334455555555                     4554        


Q ss_pred             EEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258          599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  678 (1113)
Q Consensus       599 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1113)
                       +||---.-.+..+..   .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+-. ......     . ..   
T Consensus       195 -Vwd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~eflh-l~s~~d-----p-~~---  259 (447)
T KOG4497|consen  195 -VWDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFLH-LCSYHD-----P-TL---  259 (447)
T ss_pred             -Eecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhcc-chhccC-----c-hh---
Confidence             454322212222211   124788999999999999999999998765443 22221110 000000     0 00   


Q ss_pred             hhhhhhhhccccccccccccc-ccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEE
Q 001258          679 SAAAAAAATSAGLADRAASMV-SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  757 (1113)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  757 (1113)
                            ..+....   ..++. .+.++    .+.         -.+-...+|...+                   .+..+
T Consensus       260 ------~~~~ke~---~~~~ql~~~cL----sf~---------p~~~~a~~~~~se-------------------~~YE~  298 (447)
T KOG4497|consen  260 ------HLLEKET---FSIVQLLHHCL----SFT---------PTDLEAHIWEESE-------------------TIYEQ  298 (447)
T ss_pred             ------hhhhhhh---cchhhhccccc----ccC---------CCccccCccccch-------------------hhhhh
Confidence                  0000000   00000 00000    000         0000000111000                   00000


Q ss_pred             EEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258          758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  837 (1113)
Q Consensus       758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  837 (1113)
                      ...|             +.+-.                    ..+.+.      ..  +..-.+.-++|++|..++++-.
T Consensus       299 ~~~p-------------v~~~~--------------------lkp~tD------~p--nPk~g~g~lafs~Ds~y~aTrn  337 (447)
T KOG4497|consen  299 QMTP-------------VKVHK--------------------LKPPTD------FP--NPKCGAGKLAFSCDSTYAATRN  337 (447)
T ss_pred             hhcc-------------eeeec--------------------ccCCCC------CC--CcccccceeeecCCceEEeeec
Confidence            0000             00000                    000000      00  1234566799999999999987


Q ss_pred             C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258          838 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       838 d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  914 (1113)
                      |   +.+.+||++..+....+. ...+|....|.| +...|+.......+++|......++..- +..-.|..++|..+|
T Consensus       338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g  414 (447)
T KOG4497|consen  338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPG  414 (447)
T ss_pred             CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCC
Confidence            5   679999999877655554 566899999999 6667777777778999987654444332 233679999999999


Q ss_pred             CEEEEEeCCCc
Q 001258          915 NVLVSSGADSQ  925 (1113)
Q Consensus       915 ~~L~s~s~D~~  925 (1113)
                      ..++-.+.|.-
T Consensus       415 ~~i~l~~kDaf  425 (447)
T KOG4497|consen  415 EFIVLCGKDAF  425 (447)
T ss_pred             cEEEEEcCCce
Confidence            99999999874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.77  E-value=5.1e-17  Score=159.05  Aligned_cols=274  Identities=16%  Similarity=0.265  Sum_probs=189.6

Q ss_pred             eeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-------ce-----eeEeec-cCcCEEEEeeee-----cCCceEEEEE
Q 001258          468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFEG-HEAPVYSVCPHH-----KENIQFIFST  529 (1113)
Q Consensus       468 V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-------~~-----~~~~~~-h~~~v~~~~~~~-----~~~~~~l~s~  529 (1113)
                      ...+.|+|||.  .|++-+.|..+++|++...       ..     ..+++- ....|...+|-+     .++..++++.
T Consensus        52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            34689999999  7999999999999998521       11     111211 234566666642     3455789999


Q ss_pred             ecCCcEEEEEcCCCCCeeeeeCCCC-----ceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC-
Q 001258          530 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-  603 (1113)
Q Consensus       530 ~~dg~i~iwd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-  603 (1113)
                      +.+.-|++||.-+++....+..-..     ...+++|+|||                     .+|++| ....|++||+ 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---------------------eqlfaG-ykrcirvFdt~  187 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---------------------EQLFAG-YKRCIRVFDTS  187 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---------------------CeEeec-ccceEEEeecc
Confidence            9999999999998877765543221     22344555555                     456654 5689999998 


Q ss_pred             CCCceEEEEc-----cCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCccc
Q 001258          604 DSVQLLTSID-----ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  677 (1113)
Q Consensus       604 ~~~~~~~~~~-----~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1113)
                      +.|+......     ..+..+.+.+++|+| +...+++|+....+-|+.-... .++..                     
T Consensus       188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l---------------------  245 (406)
T KOG2919|consen  188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL---------------------  245 (406)
T ss_pred             CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence            5555332221     112234677899999 5568888888777766653322 11100                     


Q ss_pred             chhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEE
Q 001258          678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  757 (1113)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~  757 (1113)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (406)
T KOG2919|consen  246 --------------------------------------------------------------------------------  245 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258          758 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  837 (1113)
Q Consensus       758 ~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  837 (1113)
                                                                            +  .+|.+.|+.+.|.++|+.|.+|+
T Consensus       246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence                                                                  0  02777788888888888888887


Q ss_pred             --CCeEEEEECCC-CceeeeecCCCC-CeeEEE--EecCCCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEEEEE
Q 001258          838 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF  910 (1113)
Q Consensus       838 --dg~i~vwd~~~-~~~~~~~~~~~~-~i~~l~--~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~  910 (1113)
                        |..|..||++. ...+..+..|.. .-..+-  ..| ++++||+|+.||.|++||+++ +..+..+..|++.|+.+++
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence              78899999874 444555665654 223344  456 789999999999999999998 7778888889999999999


Q ss_pred             cCCCCEEEEEeCCC
Q 001258          911 SHALNVLVSSGADS  924 (1113)
Q Consensus       911 s~d~~~L~s~s~D~  924 (1113)
                      +|--.++++++...
T Consensus       349 nP~mpilatssGqr  362 (406)
T KOG2919|consen  349 NPIMPILATSSGQR  362 (406)
T ss_pred             CcccceeeeccCce
Confidence            99988999887643

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.8e-17  Score=164.23  Aligned_cols=221  Identities=14%  Similarity=0.244  Sum_probs=168.1

Q ss_pred             ccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEec
Q 001258          412 QAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  486 (1113)
Q Consensus       412 ~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s  486 (1113)
                      +..+..||+++|..++|+| +...||+||.|.+|.||++..+..    ..+...|.||...|-.|+|.|.... +|++++
T Consensus        73 ~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag  151 (472)
T KOG0303|consen   73 SYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAG  151 (472)
T ss_pred             CCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhcc
Confidence            3346889999999999999 788899999999999999875533    2345578999999999999999877 799999


Q ss_pred             CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC-ceEEEEEccCC
Q 001258          487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADG  565 (1113)
Q Consensus       487 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~v~~~~~s~~~  565 (1113)
                      .|.+|.+||+.+|+.+.++. |.+.|.+++|+  .||.++++.+.|+.|++||.++++.+..-..|.+ .-....|-.+|
T Consensus       152 ~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g  228 (472)
T KOG0303|consen  152 SDNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG  228 (472)
T ss_pred             CCceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence            99999999999999998888 99999999976  4668999999999999999999877766544433 33344444444


Q ss_pred             CeEEeccccCceeEEEecCCCCEEEEEe----cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCC
Q 001258          566 TRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDN  640 (1113)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg  640 (1113)
                      .                      +++.+    .+..+-+||..+.+.-..+..-.....|.---|.+|..+++.+ -.|+
T Consensus       229 ~----------------------i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~  286 (472)
T KOG0303|consen  229 K----------------------IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDS  286 (472)
T ss_pred             c----------------------eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCc
Confidence            4                      44432    5788999998764432222222223345555677888777655 4689


Q ss_pred             cEEEEEcCCCccceeccc
Q 001258          641 GIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~  658 (1113)
                      .||.|.+.+....+..+.
T Consensus       287 ~IRYyEit~d~P~~hyln  304 (472)
T KOG0303|consen  287 SIRYFEITNEPPFVHYLN  304 (472)
T ss_pred             ceEEEEecCCCceeEEec
Confidence            999999988744444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=4.7e-16  Score=146.18  Aligned_cols=289  Identities=11%  Similarity=0.114  Sum_probs=196.9

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .|.+-+++|.+++++++..+|.|.++.+..-.....             ...|+......  ..|..+|+.++|.  ..+
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~~   74 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DDF   74 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hhh
Confidence            355567899999999999999999998764211100             11222222112  3499999999997  568


Q ss_pred             EEEEeCCeEEEEECCCCce------eeee--c-----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          833 VMSASGGKISLFNMMTFKT------MATF--M-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~------~~~~--~-----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      |++++||.|+=|.......      +...  +     ..-..|+++-..|..+.+|.+| .|+.++-||+++|+...+++
T Consensus        75 Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   75 LLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             eeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEc
Confidence            9999999999887653222      1111  1     1234689999999556555545 79999999999999999999


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  979 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d  979 (1113)
                      ||++.|.++.--.....+.||++||++++||.++++.....-....+....+...-.-.+..-+..+++++....+.+|.
T Consensus       154 GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~lslwh  233 (325)
T KOG0649|consen  154 GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLSLWH  233 (325)
T ss_pred             CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCCceeEEe
Confidence            99999999998666678899999999999999997764321111111111100111235666778899999999999999


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      ++..++...+..   ..++..+.|..  +.+++++..+.|.-|.+. |.+...+.      .+|.+ .+......+|  -
T Consensus       234 Lrsse~t~vfpi---pa~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s~~-c~s~s~~~~p--~  298 (325)
T KOG0649|consen  234 LRSSESTCVFPI---PARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIP------VESTA-CYSASWQTSP--I  298 (325)
T ss_pred             ccCCCceEEEec---ccceeEeeeec--ceEEEeccccceeeeeec-cEEEEecc------CCccc-eeeecccCCc--e
Confidence            999999998876   55788888854  478888888899999986 44444433      12222 2221222233  3


Q ss_pred             CEEEEEeCCCcEEEE
Q 001258         1060 NEFALGLSDGGVHVF 1074 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW 1074 (1113)
                      +.|..++..+.+.|+
T Consensus       299 k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  299 KFISIAGFSNKLHIL  313 (325)
T ss_pred             EEEEecccceeeeee
Confidence            455556666677665

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1e-15  Score=166.51  Aligned_cols=510  Identities=14%  Similarity=0.153  Sum_probs=289.7

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-----
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-----  431 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-----  431 (1113)
                      |...-.++.|+|.|  |+|-|+. ..|.+-|..+-+.+.                   .+.-|...|+.+.|+|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence            34456889999999  6888764 578888887776665                   36678899999999873     


Q ss_pred             -C------CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC---CCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          432 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH---PNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       432 -g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~---~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                       +      -+||++...|.|.+||...+..+.   .+..|.++|..++|-+   +.++ +++.-....++.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence             1      257778888999999999887554   6788999999999975   3434 555556678999999999999


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-------eEEec---
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG---  571 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~---  571 (1113)
                      ............|+.+.|-... .+..-+..|.+.+-+.-.....      ..+...+.+..+-.       ....+   
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~r-h~~~l~s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSR-HFCVLGSKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcc-eEEEEccCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence            8877766666676776665443 3444444565555543221110      00001111111100       00000   


Q ss_pred             -cccCc------eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC--CEEEEEECCCcE
Q 001258          572 -FRKRS------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI  642 (1113)
Q Consensus       572 -~~~~~------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i  642 (1113)
                       .....      ..-++|+|.-+.++-..-...+.++|++-..++.......+  .+.-+.+-|++  ..|++...||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence             00000      11246677766666666778899999998888888876644  45567777754  579999999999


Q ss_pred             EEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccC
Q 001258          643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  722 (1113)
Q Consensus       643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  722 (1113)
                      .+|-.+......+.-..+              ++                                           .+.
T Consensus       299 tirvrk~~~~~f~~~~~~--------------l~-------------------------------------------~dl  321 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNAS--------------LS-------------------------------------------MDL  321 (1062)
T ss_pred             EEEEeeccCccccccchh--------------hc-------------------------------------------ccc
Confidence            999654321111110000              00                                           000


Q ss_pred             CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                      ...+.+....                 ....+......|. ...++....+|...+|.+.++....+.......-..-+|
T Consensus       322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~  384 (1062)
T KOG1912|consen  322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD  384 (1062)
T ss_pred             ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence            0000000000                 1111122222232 333444555666666666543332222110000000000


Q ss_pred             CCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCe--EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001258          802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  879 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~  879 (1113)
                      .......         -....-+.+|.||.    -+.|.  +++--+..........  .+. +....-|    ++|.|.
T Consensus       385 f~~~~~~---------v~k~~l~~LS~dg~----h~sGs~~~~~~p~p~~t~~~~~p--~~n-~~~~~~p----LvAvGT  444 (1062)
T KOG1912|consen  385 FNLSTKL---------VGKTSLISLSDDGS----HSSGSTCVRMRPMPELTKVENDP--GGN-TPAGTVP----LVAVGT  444 (1062)
T ss_pred             ccCceee---------hhhccccchhhcCC----CCCCceeeecccCcccceeecCC--CCC-ccceeee----eEEeec
Confidence            0000000         00000011111110    00010  0000000000000000  111 1111222    889999


Q ss_pred             cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccccccCCCCC
Q 001258          880 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRT  949 (1113)
Q Consensus       880 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~  949 (1113)
                      ..|+|.++|+.++...+.+..|.+.|.++.|..... |++.+.          -+.+.+-|+.+|.....+-.     ..
T Consensus       445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l-----~~  518 (1062)
T KOG1912|consen  445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGL-----QK  518 (1062)
T ss_pred             CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccC-----CC
Confidence            999999999999999999999999999999975543 444332          24577888888654332222     22


Q ss_pred             CCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCC-eeEEEEC
Q 001258          950 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS 1004 (1113)
Q Consensus       950 ~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~-v~~l~~s 1004 (1113)
                      +...+|..+..|.-|+|+++. .+.-+.+||+++..+++....   .-+ |+.+.|+
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs  572 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS  572 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence            233689999999999999995 888999999998887766542   334 8889998

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=6.8e-17  Score=162.43  Aligned_cols=245  Identities=14%  Similarity=0.195  Sum_probs=174.9

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      +...-..-+|+++|..++|+|.....+|+||.|.+|.||++..+......            ......|.||...|--++
T Consensus        71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~l------------tepvv~L~gH~rrVg~V~  138 (472)
T KOG0303|consen   71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDL------------TEPVVELYGHQRRVGLVQ  138 (472)
T ss_pred             CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCc------------ccceEEEeecceeEEEEe
Confidence            34444455799999999999998889999999999999999876554321            112236899999999999


Q ss_pred             EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      |+| -.+.|++++.|.+|.+||+.+|+.+-   ++. |.+.|+++.|+.||.  ++++.+.|+.|+|||.++++.+..-.
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence            999 46688999999999999999998765   565 999999999999999  79999999999999999999999888


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEe---cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      +|.+.=..-++ +-.+|.++-||-   .+..+-+||..+.+....+..-.                   ....+..=-|+
T Consensus       213 ~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-------------------tSnGvl~PFyD  272 (472)
T KOG0303|consen  213 AHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-------------------TSNGVLLPFYD  272 (472)
T ss_pred             cccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEec-------------------cCCceEEeeec
Confidence            88754322221 234556444442   36789999987755443221100                   00011222334


Q ss_pred             CCCCEEEE-EecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCC
Q 001258          584 TTKNRFLA-AGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDG  630 (1113)
Q Consensus       584 ~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~  630 (1113)
                      ++.+.++. |-.|+.|+-|.+....+ ++-+.......+-..+.|-|..
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR  321 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR  321 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc
Confidence            44445544 55799999999977653 3333333333445677777754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.2e-17  Score=190.92  Aligned_cols=280  Identities=14%  Similarity=0.178  Sum_probs=207.6

Q ss_pred             cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCce----EEEeecCCeEEEEEccccccCCCCceeeeec
Q 001258          721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA  796 (1113)
Q Consensus       721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~----l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  796 (1113)
                      +.+.++.+|.+........+.....  .....+...++|.+.|..    |+.|..||.|.+|+...-.            
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------------  101 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------------  101 (1049)
T ss_pred             ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhc------------
Confidence            4556777777765444432221111  114567788999988776    7778889999999875310            


Q ss_pred             CeecCCCCccccccccCCCCCCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCC
Q 001258          797 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN  872 (1113)
Q Consensus       797 ~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~  872 (1113)
                             .+...........|.+.|..+.|++... +||+|+ ||.|.|||+...+....+.  .....|.+++|+....
T Consensus       102 -------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq  174 (1049)
T KOG0307|consen  102 -------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS  174 (1049)
T ss_pred             -------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence                   0111111111224999999999999876 888988 8999999998766555552  2456799999998778


Q ss_pred             cEEEEEecCCcEEEEEcccceeeeeeccccc--CeEEEEEcCCC-CEEEEEeCCC---cEEEEeCCCCccccccccccCC
Q 001258          873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT  946 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~L~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~  946 (1113)
                      ++||+++.+|.+.|||++..+.+-.+..|.+  .+..|+|+|+. ..|++++.|.   .|.+||++...           
T Consensus       175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-----------  243 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-----------  243 (1049)
T ss_pred             HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-----------
Confidence            8999999999999999999888888877665  36789999986 4566666553   57888876511           


Q ss_pred             CCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecC
Q 001258          947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       947 ~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                                                           ..++.+  .+|...|.++.|++.+ ++|++++.|+.|.+|+.+
T Consensus       244 -------------------------------------sP~k~~--~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  244 -------------------------------------SPLKIL--EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             -------------------------------------Cchhhh--cccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence                                                 011122  2788999999999966 899999999999999999


Q ss_pred             CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +++.+..+.       .....+.  .+.|.|.+...++..+-||.|-|+.+.+..
T Consensus       285 tgEvl~~~p-------~~~nW~f--dv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  285 TGEVLGELP-------AQGNWCF--DVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CceEeeecC-------CCCccee--eeeecCCCcchhhhheeccceeeeeeecCC
Confidence            999998875       3234444  599999999999999999999999998776

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.75  E-value=4e-18  Score=186.30  Aligned_cols=286  Identities=19%  Similarity=0.263  Sum_probs=212.1

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      -+.||...|+|+.|...|.++++|++|..|+||...++.++.   .+.||.+.|+.++.+.++.  +++++|.|..|++|
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA---s~rGhs~ditdlavs~~n~--~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA---SCRGHSGDITDLAVSSNNT--MIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc---cCCCCccccchhccchhhh--hhhhcccCceEEEE
Confidence            478999999999999999999999999999999999998877   7999999999999998887  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      .+.++.++..+.||++.|++++|+|..      +.+.||++++||.+- ..+             .+.|.-.        
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~------sss~dgt~~~wd~r~-~~~-------------~y~prp~--------  311 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA------SSSDDGTCRIWDARL-EPR-------------IYVPRPL--------  311 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc------cCCCCCceEeccccc-ccc-------------ccCCCCC--------
Confidence            999999999999999999999987743      678899999998871 110             0111000        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                                 +..++            .-+.++.|...+.-+++++.|+.-..|...-.    
T Consensus       312 ---------------------------~~~~~------------~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l----  348 (1113)
T KOG0644|consen  312 ---------------------------KFTEK------------DLVDSILFENNGDRFLTGSRDGEARNHEFEQL----  348 (1113)
T ss_pred             ---------------------------Ccccc------------cceeeeeccccccccccccCCcccccchhhHh----
Confidence                                       00000            11333444445556666776666555532110    


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                                                                                                      
T Consensus       349 --------------------------------------------------------------------------------  348 (1113)
T KOG0644|consen  349 --------------------------------------------------------------------------------  348 (1113)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                             ++...+-.+++...|                                          
T Consensus       349 -----------------------~~~~~~lif~t~ssd------------------------------------------  363 (1113)
T KOG0644|consen  349 -----------------------AWRSNLLIFVTRSSD------------------------------------------  363 (1113)
T ss_pred             -----------------------hhhccceEEEecccc------------------------------------------
Confidence                                   000000001111100                                          


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                                    ...+.+++- +-.+.+|++.++...+.+.+|...+..+.++|.+.++..+++.||...|||+-.|.
T Consensus       364 --------------~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~  429 (1113)
T KOG0644|consen  364 --------------LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI  429 (1113)
T ss_pred             --------------ccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence                          002233333 56788999999999999999999999999999778888899999999999999887


Q ss_pred             eeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258          894 VKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       894 ~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~  936 (1113)
                      .++.. .+| +.+..-+||+||..++....-|.++|.....++.
T Consensus       430 pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s  472 (1113)
T KOG0644|consen  430 PIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS  472 (1113)
T ss_pred             cceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence            76554 454 5566789999999999888889999987765543

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7e-17  Score=159.74  Aligned_cols=198  Identities=13%  Similarity=0.184  Sum_probs=150.6

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCCeEEEEeCCCeEEEEEcc
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH  450 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~i~iwd~~  450 (1113)
                      .+|++-..|.|++||..+++.+.                   .+.+|...++.+.|..  ....+.+|+.||+|++||++
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            58888899999999999988776                   3778888899999987  46778999999999999999


Q ss_pred             CCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEec----CCCcEEEEeCCCCce-eeEe-eccCcCEEEEeeeecCCc
Q 001258          451 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI  523 (1113)
Q Consensus       451 ~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s----~d~~i~iwd~~~~~~-~~~~-~~h~~~v~~~~~~~~~~~  523 (1113)
                      +......+ .+.+|. .+..|++-.-.+.  +++.|.    .|-.|.+||++..+. ++.+ ..|.+.|++++|+|+.. 
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence            87665433 345565 4667777765666  577664    367899999997766 5544 56999999999999765 


Q ss_pred             eEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEE
Q 001258          524 QFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  600 (1113)
Q Consensus       524 ~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  600 (1113)
                      ++|++|+.||.|.++|+......   .....+...|..+.|..++-                    ..+.+.+..++..+
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~  238 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI  238 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence            79999999999999999764322   12222334455555555441                    34888899999999


Q ss_pred             EECCCCceEEEEc
Q 001258          601 WDMDSVQLLTSID  613 (1113)
Q Consensus       601 wd~~~~~~~~~~~  613 (1113)
                      |+++.+.+...+.
T Consensus       239 ~ele~~~~~~~~~  251 (376)
T KOG1188|consen  239 YELEDGSEETWLE  251 (376)
T ss_pred             EEccCCChhhccc
Confidence            9999888665553

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=1.1e-16  Score=152.36  Aligned_cols=308  Identities=11%  Similarity=0.149  Sum_probs=198.2

Q ss_pred             eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258          457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI  535 (1113)
Q Consensus       457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1113)
                      ++..+++|.+.|+++.|-.+++   |.+|..-|.|++|++.+.+.+..+. .|...|+.+...+.   ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~---d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN---DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC---cchhhcCCCceE
Confidence            3457889999999999998886   8999999999999999999888888 56778888774432   478999999999


Q ss_pred             EEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC-CcEEEEECCCCceEEEEcc
Q 001258          536 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       536 ~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~  614 (1113)
                      .+|++.-......   +.-.++++.|.+..-     +.+....       ...++.-++. ..+++-|......+.....
T Consensus        80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl-----~~~~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL-----VKKPKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             EEEEccCcceEEE---eeeecccccccccee-----ccCCCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence            9999875332221   112233333332110     0000000       0011111100 0122222222222221111


Q ss_pred             --CCCCCCcCeEEECC-CC--CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccc
Q 001258          615 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  689 (1113)
Q Consensus       615 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1113)
                        ....+.+.|..+.. ++  -++++|..+|.+.+||+.++.. +..+.....                           
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-~~~~~~~~k---------------------------  196 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-IIQLPQSSK---------------------------  196 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-eeccccccc---------------------------
Confidence              11123344444332 22  2567788899999999988722 222211000                           


Q ss_pred             ccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEe
Q 001258          690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  769 (1113)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  769 (1113)
                                                               +            ..+...|..+|.++.|.+.-..=+.+
T Consensus       197 -----------------------------------------v------------~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  197 -----------------------------------------V------------ESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             -----------------------------------------c------------ccchhhccCcceeeeechhhcCCcCC
Confidence                                                     0            01112378889999998776666777


Q ss_pred             ecCCeEEEEEccccccCCCCceeeeecCeecCCCCccc-cccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECC
Q 001258          770 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM-MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM  847 (1113)
Q Consensus       770 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~-~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~  847 (1113)
                      +.+..+..|.++...                    |.+ +..+..-  ..-.|..+.+-||++.+|+++ |+.||||+.+
T Consensus       224 ga~dkl~~~Sl~~s~--------------------gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  224 GADDKLVMYSLNHST--------------------GSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             Cccccceeeeecccc--------------------CcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            777778888775321                    111 0000111  244578899999999999999 9999999999


Q ss_pred             CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          848 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       848 ~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                      +...+..+..|...|++++|+| +..++|.++.|++|-+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999999 8889999999999999986

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=4.9e-17  Score=171.47  Aligned_cols=229  Identities=16%  Similarity=0.280  Sum_probs=180.2

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEcc-----CCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  489 (1113)
                      .+..|.+.|+.++|.|-...|++++.||++.+|+++     ....+.++.+|++|.++|.|++..+++.  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            577899999999999999999999999999999993     3345678889999999999999999999  799999999


Q ss_pred             cEEEEeCCC------C----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC--CceE
Q 001258          490 TIKVWDATN------G----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG--RWCT  557 (1113)
Q Consensus       490 ~i~iwd~~~------~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~  557 (1113)
                      +|+.|++..      .    .....+.||.+.|+.++++...  ..|++++.||+++.|+...... .++....  +...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            999996541      1    2234778999999999988776  4799999999999998876554 2222211  1112


Q ss_pred             EEEEccCC--------C---------------eEEec------cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258          558 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  608 (1113)
Q Consensus       558 ~~~~s~~~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  608 (1113)
                      ++.+....        +               .++..      .....+..+.++|.....+++..|+.|+++|..++..
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            22221110        0               11111      1123456688889999999999999999999999999


Q ss_pred             EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       609 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.....|  ...++++++.|+|-+|++++.|+.+++|.+...
T Consensus       524 l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeec--cceecceeecCCCceEEeecCCceeehhhccch
Confidence            9888766  457999999999999999999999999988655

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=3.5e-16  Score=150.85  Aligned_cols=257  Identities=16%  Similarity=0.250  Sum_probs=184.8

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecC-------CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNV-------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      .|.++||.++-+|..+++|++...+       ..+.||.+........         .........+-..+-+.|.|+.|
T Consensus        61 h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~---------~~tlE~v~~Ldteavg~i~cvew  131 (370)
T KOG1007|consen   61 HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN---------SSTLECVASLDTEAVGKINCVEW  131 (370)
T ss_pred             cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc---------cchhhHhhcCCHHHhCceeeEEE
Confidence            3789999999999999889887653       2467888765432210         00111112222355669999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCcee-eeee--eeecccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~-~~~~--~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      .|++..||+-. |..|.+|++..+..+ ....  .-.+|....++-+|+|  |+.  .+++.+ |+++..||+++.++..
T Consensus       132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~  207 (370)
T KOG1007|consen  132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNN  207 (370)
T ss_pred             cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhc
Confidence            99999999876 778999999987652 1110  1123666788999998  565  455544 8999999999988877


Q ss_pred             Ee-eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          504 IF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .+ ..|...|..+.|+|+.. .+|++|+.||.|++||.+..+ ++..+..|.++|.++.|.|.-..              
T Consensus       208 sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdq--------------  272 (370)
T KOG1007|consen  208 SIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQ--------------  272 (370)
T ss_pred             chhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccce--------------
Confidence            66 46888999999988664 689999999999999998654 45678899999999999886542              


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCc-----------------------------eEEEEccCCCCCCcCeEEECC-CCC
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-DGC  631 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~~~  631 (1113)
                            .+++|+.|..|.+|...+-.                             .+.++..  +...|.+++|+. |.-
T Consensus       273 ------LiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde--hEDSVY~~aWSsadPW  344 (370)
T KOG1007|consen  273 ------LILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE--HEDSVYALAWSSADPW  344 (370)
T ss_pred             ------EEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc--cccceEEEeeccCCCe
Confidence                  46777778888777653211                             1122332  345799999997 556


Q ss_pred             EEEEEECCCcEEEEEcC
Q 001258          632 LLAVSTNDNGIKILATS  648 (1113)
Q Consensus       632 ~l~~~~~dg~i~iwd~~  648 (1113)
                      ++++-+.||.+.|=.+.
T Consensus       345 iFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  345 IFASLSYDGRVIISSVP  361 (370)
T ss_pred             eEEEeccCceEEeecCC
Confidence            77888999999876543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=1.8e-16  Score=152.72  Aligned_cols=228  Identities=17%  Similarity=0.193  Sum_probs=177.3

Q ss_pred             CCeEEEEECCCCce---eeeecCCCCCeeEEEEecCCCcEEEEEecC-------CcEEEEEccc---------ceeeeee
Q 001258          838 GGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSIQIYNVRV---------DEVKSKL  898 (1113)
Q Consensus       838 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~v~iwd~~~---------~~~~~~l  898 (1113)
                      |+.|.+.+++...-   ...|..|.+.|..++-+|.+.++|++...+       -.+.||.+..         .+++..+
T Consensus        39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L  118 (370)
T KOG1007|consen   39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL  118 (370)
T ss_pred             cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence            57888888765432   245677888999999999888899887653       2577998864         2344555


Q ss_pred             c-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEEEcCCeE
Q 001258          899 K-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVVHETQL  975 (1113)
Q Consensus       899 ~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~~d~~v  975 (1113)
                      . .+-+.|.++.|.|++..|++.. |..|.+|+++.+..............  .....++-+|+|  ||..+++..|+++
T Consensus       119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e--~~~~ftsg~WspHHdgnqv~tt~d~tl  195 (370)
T KOG1007|consen  119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAE--MRHSFTSGAWSPHHDGNQVATTSDSTL  195 (370)
T ss_pred             CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccc--ccceecccccCCCCccceEEEeCCCcE
Confidence            4 4667999999999999999887 77899999998765322222111110  113567788998  8999999999999


Q ss_pred             EEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEEeCCCcEEEEecCCC-ceeeecCCCcccCCCcccCccceEEE
Q 001258          976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSNVHPLVIA 1053 (1113)
Q Consensus       976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~v~~i~~~ 1053 (1113)
                      ..||+++..+...+. ++|...|..+.|.|+.++ |+++++||.|++||.... ..+..+.       +|+..|+.  +.
T Consensus       196 ~~~D~RT~~~~~sI~-dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~-------~HsHWvW~--VR  265 (370)
T KOG1007|consen  196 QFWDLRTMKKNNSIE-DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELP-------GHSHWVWA--VR  265 (370)
T ss_pred             EEEEccchhhhcchh-hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccC-------CCceEEEE--EE
Confidence            999999998877766 488999999999998875 889999999999999654 3444444       99999995  89


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1054 AHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1054 ~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      |.|...+++++|+.|..|.+|...+
T Consensus       266 fn~~hdqLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  266 FNPEHDQLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             ecCccceEEEecCCCceeEEEeccc
Confidence            9998888999999999999998643

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=7.9e-18  Score=184.05  Aligned_cols=254  Identities=18%  Similarity=0.307  Sum_probs=192.3

Q ss_pred             cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      +.+.++++|...|.|+.|...|.| +++|+.|..|+||..+++.++.                   ...||.+.|+.++.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav  240 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV  240 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence            456678889999999999999997 9999999999999999998887                   48999999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE---e
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F  505 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~---~  505 (1113)
                      +.+..++|+++.|..|++|.+.++..+.   .+.+|++.|++++|+|-      .+.+.||++++||.+-.-.+..   +
T Consensus       241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~  311 (1113)
T KOG0644|consen  241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL  311 (1113)
T ss_pred             chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence            9999999999999999999999998776   78999999999999984      4788999999999871111111   1


Q ss_pred             ec-cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          506 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       506 ~~-h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      .. ....+.++.|  ..++.-+.||+.|+.-..|.+......      ...+.-+..+.+                    
T Consensus       312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd--------------------  363 (1113)
T KOG0644|consen  312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD--------------------  363 (1113)
T ss_pred             Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence            11 1234444543  345567999999999888865421110      000000111111                    


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258          585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  661 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1113)
                      ...+.+++-.+-.+++|++.+|...+.+.++.+  .+..+.++| +.+...+++.||...|||+-.|........+|.
T Consensus       364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~  439 (1113)
T KOG0644|consen  364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG  439 (1113)
T ss_pred             ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc
Confidence            012456667788899999999999998887754  678899999 666777899999999999998844444444433

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=2.6e-16  Score=155.80  Aligned_cols=151  Identities=18%  Similarity=0.274  Sum_probs=115.9

Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEE
Q 001258          481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  560 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  560 (1113)
                      .++++-..|+|++||..+|+.+..|+++...++.+.|........+.+++.||+|++||++.......+.....      
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~------  115 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQ------  115 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCC------
Confidence            57888889999999999999999999999999999987654556899999999999999998655443222211      


Q ss_pred             EccCCCeEEeccccCceeEEEecCCCCEEEEEe----cCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258          561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA  634 (1113)
Q Consensus       561 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~  634 (1113)
                                  ......+++.+-.++.+++|.    .+-.|.+||++..+. +..+. ..|...|+++.|+| +.++|+
T Consensus       116 ------------~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  116 ------------SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             ------------CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence                        122344444444555666665    477899999998776 44443 34567899999999 678999


Q ss_pred             EEECCCcEEEEEcCCC
Q 001258          635 VSTNDNGIKILATSDG  650 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~  650 (1113)
                      +|+.||.|.++|+...
T Consensus       183 SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eecccceEEeeecCCC
Confidence            9999999999998644

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=1e-15  Score=153.14  Aligned_cols=166  Identities=16%  Similarity=0.233  Sum_probs=123.7

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC------CceeeEee-ccCcCEEEEeeeecCCceEEEEEecC
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD  532 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~d  532 (1113)
                      .+.+|.+.|+++.|+.+++  +|++|+.|..+++|+++.      .+++.... .|...|.|++|....  ..+++|+.+
T Consensus        51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N--~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN--RFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC--eeEecCCCc
Confidence            5678999999999999988  899999999999999863      35555443 356899999986433  789999999


Q ss_pred             CcEEEEEcCCCCCeeeeeCCC--CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eE
Q 001258          533 GKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LL  609 (1113)
Q Consensus       533 g~i~iwd~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~  609 (1113)
                      ++|..-|+++.+.+..+....  +.|..                     +..+|..+.+++.+.++.|.+||.+... .+
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~---------------------m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~  185 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYH---------------------MDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI  185 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceee---------------------cccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence            999999999866555433221  23444                     4455556679999999999999998755 33


Q ss_pred             EEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCC
Q 001258          610 TSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ..+-..........+.|+| ...+|++.+..+-+.+||....
T Consensus       186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~  227 (609)
T KOG4227|consen  186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ  227 (609)
T ss_pred             ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence            2222222233567889999 4567888888888999998655

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=1.1e-15  Score=171.84  Aligned_cols=320  Identities=16%  Similarity=0.238  Sum_probs=216.9

Q ss_pred             CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc---CcCEEEEee
Q 001258          441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCP  517 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h---~~~v~~~~~  517 (1113)
                      +..|..||...         ..+....-..+.|+|-..  .++++...-.|+|||.+.++++..|..+   ...|+.+++
T Consensus      1049 t~~i~~W~~~~---------~~~n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~l 1117 (1387)
T KOG1517|consen 1049 TNPIGNWDQKF---------MTGNNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLEL 1117 (1387)
T ss_pred             cccccchHHHH---------HhcCCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeee
Confidence            34466777543         122333556778888888  5888887789999999999998888654   367888888


Q ss_pred             eecCCceEEEEEecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258          518 HHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1113)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1113)
                      -...|..++++|+.||.|++|+--... ....+...-..+..+...+.|         .. .+++|.....+|+++++-.
T Consensus      1118 iNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~---------~~-~v~dWqQ~~G~Ll~tGd~r 1187 (1387)
T KOG1517|consen 1118 INEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARG---------TG-LVVDWQQQSGHLLVTGDVR 1187 (1387)
T ss_pred             ecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCC---------CC-eeeehhhhCCeEEecCCee
Confidence            777777899999999999999643321 111111111111111111111         12 5678888878888888899


Q ss_pred             cEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCc
Q 001258          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  675 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1113)
                      .|+|||......+..+..... ..|++++-+. .|+.+++|..||.|++||.+.....                      
T Consensus      1188 ~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---------------------- 1244 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSS-TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---------------------- 1244 (1387)
T ss_pred             EEEEEecccceeEeecccCCC-ccceeecccccCCceEEEeecCCceEEeecccCCcc----------------------
Confidence            999999998888877765433 3466665544 5799999999999999997654110                      


Q ss_pred             ccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc--
Q 001258          676 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--  753 (1113)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~--  753 (1113)
                                                                      .-|.+|.-                  |...  
T Consensus      1245 ------------------------------------------------s~v~~~R~------------------h~~~~~ 1258 (1387)
T KOG1517|consen 1245 ------------------------------------------------SLVCVYRE------------------HNDVEP 1258 (1387)
T ss_pred             ------------------------------------------------ccceeecc------------------cCCccc
Confidence                                                            11222221                  2222  


Q ss_pred             eEEEEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          754 ISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       754 i~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      |..+.+-+.|-. |++++.+|.|++||+......                   ........- ...+..+++..++....
T Consensus      1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-------------------~~~~iv~~~-~yGs~lTal~VH~hapi 1318 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-------------------TFLTIVAHW-EYGSALTALTVHEHAPI 1318 (1387)
T ss_pred             ceeEEeecCCCcceeeeccCCeEEEEecccCccc-------------------ccceeeecc-ccCccceeeeeccCCCe
Confidence            777888776654 999999999999998753110                   000000000 01235899999999999


Q ss_pred             EEEEeCCeEEEEECCCCceeeeecC-------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          833 VMSASGGKISLFNMMTFKTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      +|+|+.+.|+||++.. +.+..++.       ..+.+.|++|+| -.-++|+|+.|..|.||.....
T Consensus      1319 iAsGs~q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1319 IASGSAQLIKIYSLSG-EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeecCcceEEEEecCh-hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence            9999999999999864 33333322       235689999999 7788999999999999987654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=1.4e-14  Score=157.68  Aligned_cols=602  Identities=12%  Similarity=0.096  Sum_probs=337.8

Q ss_pred             CCCCcceeEecc-CCCCcEEEEEcCC-----------CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccc
Q 001258          345 EDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQ  412 (1113)
Q Consensus       345 ~~~~~~~~~~~~-h~~~V~~~~~spd-----------g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  412 (1113)
                      |...-+..+.+. |...|+.+.|.|-           .+.+||++...|.|.+||+..+..+.                 
T Consensus        41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~-----------------  103 (1062)
T KOG1912|consen   41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN-----------------  103 (1062)
T ss_pred             ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-----------------
Confidence            333455566666 8899999999763           34478888889999999999887654                 


Q ss_pred             cccccCCCcceEEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258          413 AALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  488 (1113)
Q Consensus       413 ~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  488 (1113)
                        -+..|.++|..++|-+   +. ..|++-....+|.+|+..+|+.+.   ....-.....|+.+.|-+...+.+.| ..
T Consensus       104 --~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~iLs~f~~DPfd~rh~~~l~-s~  177 (1062)
T KOG1912|consen  104 --WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEILSCFRVDPFDSRHFCVLG-SK  177 (1062)
T ss_pred             --hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcceeeeeeCCCCcceEEEEc-cC
Confidence              3677888999999976   44 456666777899999999998665   34444456778999987665344444 45


Q ss_pred             CcEEEEeCCC-------CceeeEeeccCc------------CE-----------EE--EeeeecCCceEEEEEecCCcEE
Q 001258          489 KTIKVWDATN-------GAKQYIFEGHEA------------PV-----------YS--VCPHHKENIQFIFSTALDGKIK  536 (1113)
Q Consensus       489 ~~i~iwd~~~-------~~~~~~~~~h~~------------~v-----------~~--~~~~~~~~~~~l~s~~~dg~i~  536 (1113)
                      |.+.+-+.-.       |+..+.-..|.+            .+           .+  ++|+|..  .-++-......+.
T Consensus       178 g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~--rn~lfi~~prell  255 (1062)
T KOG1912|consen  178 GFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHW--RNILFITFPRELL  255 (1062)
T ss_pred             ceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhh--hceEEEEeccceE
Confidence            6665655321       222222222222            00           11  1233333  2344445577789


Q ss_pred             EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-----------
Q 001258          537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----------  605 (1113)
Q Consensus       537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------  605 (1113)
                      ++|++-..+......+.+.+.-+.+-|++++                   ..|+++-.+|.+.+|-.+.           
T Consensus       256 v~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~  316 (1062)
T KOG1912|consen  256 VFDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNAS  316 (1062)
T ss_pred             EEcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchh
Confidence            9999887777777777777777777777663                   2488888999999997654           


Q ss_pred             -----CceEEEEccCCCCCCcCeEEECCC-CCEEEEEECCCcEEEEEcCCCccceecccccccccccc---------CCC
Q 001258          606 -----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SEN  670 (1113)
Q Consensus       606 -----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~  670 (1113)
                           ++....+..-... ........|. ...++.--.+|.+.+|.+.++........+........         ...
T Consensus       317 l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~  395 (1062)
T KOG1912|consen  317 LSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKT  395 (1062)
T ss_pred             hccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhc
Confidence                 2222222211111 1223333443 44555556678888999887622211111111100000         000


Q ss_pred             CCCCcccchhhhhhhhcccccccccccccc--cC-CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          671 SKPTISPISAAAAAAATSAGLADRAASMVS--IP-GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                      ....++.++.     -.....+.+..|+..  .. +..+.......-..++.|...|+|.++|+.+......+.      
T Consensus       396 ~l~~LS~dg~-----h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs------  464 (1062)
T KOG1912|consen  396 SLISLSDDGS-----HSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS------  464 (1062)
T ss_pred             cccchhhcCC-----CCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc------
Confidence            0001111110     000111112222111  11 111111122233567899999999999998754433332      


Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                       .|...|.++.|......+-.++.. ..            +........+.+-|+.+|.-....-...+.+.+|+.+..|
T Consensus       465 -vht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS  530 (1062)
T KOG1912|consen  465 -VHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVS  530 (1062)
T ss_pred             -ccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeec
Confidence             388899999998777744333321 00            0000011123455666776444322223467899999999


Q ss_pred             cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEe-cCCC----------------cEEEEEecCCcEEEEEc
Q 001258          828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~d~----------------~~la~g~~dg~v~iwd~  889 (1113)
                      ..++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .-                +..+..+  +..+++.+
T Consensus       531 ~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~  607 (1062)
T KOG1912|consen  531 SSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHI  607 (1062)
T ss_pred             ccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheeh
Confidence            9999999997 8889999999888776655444558899998 3 11                1223233  23333333


Q ss_pred             cc-------ceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258          890 RV-------DEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  961 (1113)
Q Consensus       890 ~~-------~~~~-~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  961 (1113)
                      .-       +... ...+...-.+..++|  .+..|+.|..+|.+.+||+.......  ....+...    .......+-
T Consensus       608 ~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~~r----a~~l~~~~i  679 (1062)
T KOG1912|consen  608 TLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPDPR----AHSLTFPQI  679 (1062)
T ss_pred             hhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCCch----hhheecccC
Confidence            21       1110 011111123344667  46789999999999999986632111  11111110    112233334


Q ss_pred             cCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                      |....+++-....+.+||.+..+.+..+.....+-.+..+.+......++  ..|.++|+-.+.....
T Consensus       680 pG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~  745 (1062)
T KOG1912|consen  680 PGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP  745 (1062)
T ss_pred             CCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence            54445555566678899988887777664222233455555544443333  3344777766654433

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.71  E-value=2.1e-15  Score=148.01  Aligned_cols=397  Identities=13%  Similarity=0.162  Sum_probs=236.0

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  504 (1113)
                      -++|||+|+|+|+++.- .+.|=|..+-+..+    +----+.|..+.|..|.-+ .+.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            47899999999999765 67788887755433    1122457899999998875 566778899999999999888888


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      +.....++.+++|+|++. ..|.+...|-.|.+|.+.+.... .+.-+...+..++|.+||+                  
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~------------------  146 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQ------------------  146 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeE-EecccccCceeEEECCCCc------------------
Confidence            888889999999987543 56777788999999999874432 2333334456666666665                  


Q ss_pred             CCCEEEEEecCCc---EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258          585 TKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  661 (1113)
Q Consensus       585 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1113)
                         +.+..+.-..   +.+.....-..+..+...  +-..+.+.|+|||..|++         ||.--..+         
T Consensus       147 ---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d--T~DltgieWsPdg~~laV---------wd~~Leyk---------  203 (447)
T KOG4497|consen  147 ---FCAILSRRDCKDYVQISSCKAWILLKEFKLD--TIDLTGIEWSPDGNWLAV---------WDNVLEYK---------  203 (447)
T ss_pred             ---eeeeeecccHHHHHHHHhhHHHHHHHhcCCC--cccccCceECCCCcEEEE---------ecchhhhe---------
Confidence               4444443211   112111222233334333  335678999999987764         54211100         


Q ss_pred             ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258          662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  741 (1113)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  741 (1113)
                                                                                      |..|.           
T Consensus       204 ----------------------------------------------------------------v~aYe-----------  208 (447)
T KOG4497|consen  204 ----------------------------------------------------------------VYAYE-----------  208 (447)
T ss_pred             ----------------------------------------------------------------eeeee-----------
Confidence                                                                            00000           


Q ss_pred             ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258          742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  821 (1113)
Q Consensus       742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v  821 (1113)
                              ..-.+..+.++|.++++++|+.|+.+||.+--+-+  +-++...-..  +-|+... ++..+.. ....-..
T Consensus       209 --------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk--~f~eflhl~s--~~dp~~~-~~~ke~~-~~~ql~~  274 (447)
T KOG4497|consen  209 --------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK--PFGEFLHLCS--YHDPTLH-LLEKETF-SIVQLLH  274 (447)
T ss_pred             --------eccceeEEEeccccceEEeeccchhhhhhceeeee--ehhhhccchh--ccCchhh-hhhhhhc-chhhhcc
Confidence                    22356778899999999999999888874421100  0000000000  0000000 0000000 0001112


Q ss_pred             cEEEEecCCCEEEEEeCCeEEEEECC-------CCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--CcEEEEEcccc
Q 001258          822 PCFALSKNDSYVMSASGGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVD  892 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~sdg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d--g~v~iwd~~~~  892 (1113)
                      .++.|.|..-- +.-....-.+|...       ..+....+......+.-++|++ |..++|+-.+.  ..+.+||+...
T Consensus       275 ~cLsf~p~~~~-a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l  352 (447)
T KOG4497|consen  275 HCLSFTPTDLE-AHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNL  352 (447)
T ss_pred             cccccCCCccc-cCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhh
Confidence            34444443210 00000000112111       1111222233345678899999 88888876533  47999999987


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  971 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~  971 (1113)
                      ++...+. ...+|.+..|.|....|+.+.....+++|......     +...+...    ..|..+.|..+|..++..+
T Consensus       353 ~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~~-----~V~vP~~G----F~i~~l~W~~~g~~i~l~~  421 (447)
T KOG4497|consen  353 KLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPR-----VVGVPKKG----FNIQKLQWLQPGEFIVLCG  421 (447)
T ss_pred             hhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCce-----EEecCCCC----ceeeeEEecCCCcEEEEEc
Confidence            7655553 45679999999999999888877789999887622     22222211    3689999999999988743

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=4.8e-15  Score=164.33  Aligned_cols=275  Identities=10%  Similarity=0.118  Sum_probs=176.0

Q ss_pred             eeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeee
Q 001258          717 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV  795 (1113)
Q Consensus       717 l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~  795 (1113)
                      .++...++.|.+|++...........+.     .......++++|+++.|++++. ++.|.+|++..             
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------   66 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------   66 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence            3455678999999996422112222221     2345678899999998877654 68888888741             


Q ss_pred             cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cc---eeeeecCCCCCeeEEEEec
Q 001258          796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP  869 (1113)
Q Consensus       796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~---~~~~~~~~~~~i~~l~~s~  869 (1113)
                              +|.+.....  .........++++|++++++++.  ++.|.+|++++ +.   .+..+. +.....+++++|
T Consensus        67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                    111100000  00223456899999999999887  78999999974 22   222222 234467789999


Q ss_pred             CCCcEEE-EEecCCcEEEEEcccceeee-------eecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--cccc
Q 001258          870 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQK  938 (1113)
Q Consensus       870 ~d~~~la-~g~~dg~v~iwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~--~~~~  938 (1113)
                       ++++++ +...++.|.+||+.+...+.       .... ......++|+|||++|++++. +++|.+|+++..  +...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             777665 45567999999997633221       1111 234678999999999988876 899999999742  2111


Q ss_pred             ccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc----eeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       939 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~----~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      ...................+.++|+|++++++  .++.|.+|++....    .+.....   ......+.|+|||++|++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence            11111111111111123468899999999996  46789999985432    2222221   234567899999999998


Q ss_pred             EeC-CCcEEEEecC
Q 001258         1013 CFL-DATVCVFSAA 1025 (1113)
Q Consensus      1013 ~~~-Dg~v~vwd~~ 1025 (1113)
                      ++. +++|.+|+++
T Consensus       291 a~~~~~~v~v~~~~  304 (330)
T PRK11028        291 AGQKSHHISVYEID  304 (330)
T ss_pred             EEccCCcEEEEEEc
Confidence            775 8999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=3.7e-14  Score=157.21  Aligned_cols=272  Identities=11%  Similarity=0.149  Sum_probs=175.2

Q ss_pred             EEEEecCCcEEEEECCC-Cc--eEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCCccceeccccccccc
Q 001258          589 FLAAGDDFSIKFWDMDS-VQ--LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDA  664 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~-~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1113)
                      +++...++.|++|++.+ ++  .+..+...   .....++++|++++|++++ .++.|.+|++... ..+.....     
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~---~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~-----   75 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVP---GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAE-----   75 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecC---CCCccEEECCCCCEEEEEECCCCcEEEEEECCC-CceEEeee-----
Confidence            34456789999999964 33  34444322   3467899999999987765 4778888887521 11110000     


Q ss_pred             cccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecc
Q 001258          665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  744 (1113)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  744 (1113)
                                                                                                    ..
T Consensus        76 ------------------------------------------------------------------------------~~   77 (330)
T PRK11028         76 ------------------------------------------------------------------------------SP   77 (330)
T ss_pred             ------------------------------------------------------------------------------ec
Confidence                                                                                          00


Q ss_pred             cCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          745 LPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       745 ~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                           .......++++|+++.+++++. ++.+.+|++.....     .             ...... ..   +...+.+
T Consensus        78 -----~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~-----~-------------~~~~~~-~~---~~~~~~~  130 (330)
T PRK11028         78 -----LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI-----P-------------VAPIQI-IE---GLEGCHS  130 (330)
T ss_pred             -----CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC-----C-------------CCceee-cc---CCCcccE
Confidence                 1123457899999998888765 68999998752110     0             000000 01   2234677


Q ss_pred             EEEecCCCEEEEEe--CCeEEEEECCCCceee-------eecCCCCCeeEEEEecCCCcEEEEEec-CCcEEEEEccc--
Q 001258          824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMA-------TFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRV--  891 (1113)
Q Consensus       824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~-------~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~iwd~~~--  891 (1113)
                      ++++|++++++++.  ++.|.+||+.+...+.       ... .......++|+| ++++++++.. ++.|.+|++..  
T Consensus       131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~  208 (330)
T PRK11028        131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPH  208 (330)
T ss_pred             eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCC
Confidence            89999999998776  6999999997633221       111 123467899999 8888887776 89999999973  


Q ss_pred             c--eeeeeecccc------cCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258          892 D--EVKSKLKGHS------KRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       892 ~--~~~~~l~~h~------~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                      +  +.+..+..+.      .....+.++||+++|+++.. ++.|.+|+++..............+     .....+.++|
T Consensus       209 ~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-----~~p~~~~~~~  283 (330)
T PRK11028        209 GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-----TQPRGFNIDH  283 (330)
T ss_pred             CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-----ccCCceEECC
Confidence            3  3344443221      12346889999999998864 7899999996543211111111112     2346789999


Q ss_pred             CCcEEEEE--cCCeEEEEeCC
Q 001258          963 DQIHFLVV--HETQLAIFETT  981 (1113)
Q Consensus       963 dg~~l~~~--~d~~v~v~d~~  981 (1113)
                      ||++|+++  .++.|.+|+++
T Consensus       284 dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        284 SGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCCEEEEEEccCCcEEEEEEc
Confidence            99999984  47899999874

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.3e-16  Score=164.98  Aligned_cols=320  Identities=16%  Similarity=0.203  Sum_probs=231.2

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      .|.+|.+.|+.|.|...|.  .+++||.|..|.+||+.+++....+ .||...|....|.|..+...+++++.||.+++=
T Consensus       137 kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s  214 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS  214 (559)
T ss_pred             cccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeee
Confidence            5889999999999999999  8999999999999999998887766 578888888788888777899999999999988


Q ss_pred             EcCCCCCee---eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC
Q 001258          539 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  615 (1113)
Q Consensus       539 d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  615 (1113)
                      .+...+...   .+..|.++|..++.-|+..                    ..|++++.|+.+.-+|++.+.....+...
T Consensus       215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~cr  274 (559)
T KOG1334|consen  215 EILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVCR  274 (559)
T ss_pred             eeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeeee
Confidence            776544332   3455666777777777654                    24889999999999999887655444322


Q ss_pred             CC-C---CCcCeEEECCCC-CEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccc
Q 001258          616 GG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG  690 (1113)
Q Consensus       616 ~~-~---~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1113)
                      .. .   -....++..|.. ..+++++.|..+++||...-.+.  ...+   .+.        .|.+..           
T Consensus       275 ~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h-----------  330 (559)
T KOG1334|consen  275 EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH-----------  330 (559)
T ss_pred             ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc-----------
Confidence            11 1   245678888854 48999999999999986533110  0000   000        111110           


Q ss_pred             cccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEee
Q 001258          691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  770 (1113)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  770 (1113)
                                                                       +.      ......|++++|+.++.-++++.
T Consensus       331 -------------------------------------------------l~------~d~~v~ITgl~Ysh~~sElLaSY  355 (559)
T KOG1334|consen  331 -------------------------------------------------LV------EDDPVNITGLVYSHDGSELLASY  355 (559)
T ss_pred             -------------------------------------------------cc------ccCcccceeEEecCCccceeeee
Confidence                                                             00      01456799999999998899999


Q ss_pred             cCCeEEEEEccccccC-CCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE-ecCCCEEEEEeC-CeEEEEECC
Q 001258          771 SNAIHLLWKWQRTERN-SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM  847 (1113)
Q Consensus       771 ~dg~i~vw~~~~~~~~-~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~-s~~~~~l~~~sd-g~i~vwd~~  847 (1113)
                      .|-.|+++.-..+... ++...     ++      .......+++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus       356 nDe~IYLF~~~~~~G~~p~~~s-----~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  356 NDEDIYLFNKSMGDGSEPDPSS-----PR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             cccceEEeccccccCCCCCCCc-----ch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence            9999999854432210 00000     00      0122222445334556778875 488899999996 999999999


Q ss_pred             CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          848 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       848 ~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      +++.++-+.+...-|+|+.-+| ---+||+.+-|..|+||.-.+.
T Consensus       425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence            9999999888777899999888 5679999999999999986443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.70  E-value=1.6e-15  Score=169.90  Aligned_cols=260  Identities=20%  Similarity=0.263  Sum_probs=190.2

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ..+.-...|.|+.|+|....++|.|+.+|.|.+||+..+.....             .........|..+|+.+.|-.+-
T Consensus       237 ~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  237 LVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             EEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEeccC
Confidence            55567899999999999998999999999999999988765210             11112456899999999998754


Q ss_pred             Ce--EEEEeCCCeEEEEEccCCceeeeeeeee---------cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---C
Q 001258          433 SL--FGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---N  498 (1113)
Q Consensus       433 ~~--las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~  498 (1113)
                      .-  +++++.||.|..|+++.-........+.         .-...+++++|.+.... .|+.|+++|.|.--+-.   .
T Consensus       304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~  382 (555)
T KOG1587|consen  304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTP  382 (555)
T ss_pred             CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcc
Confidence            44  9999999999999876432211100111         12236899999998777 78999999998773322   2


Q ss_pred             Cc-----eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC-CCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          499 GA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       499 ~~-----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      +.     .+..+..|.++|.++.++|-.. ..+.+++ |.++++|.-. ...+...+..+...+.+++|||-...     
T Consensus       383 ~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpa-----  455 (555)
T KOG1587|consen  383 APEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPA-----  455 (555)
T ss_pred             cccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCce-----
Confidence            22     1335567899999999877654 3445555 9999999887 55556666666666888888876542     


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                     .++++..+|.|.+||+.....  +......  ....+.+.|++.|+.|++|...|.+.+|++...
T Consensus       456 ---------------vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  456 ---------------VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ---------------EEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence                           478888999999999976443  3333333  445678889999999999999999999998654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.70  E-value=8.2e-15  Score=147.00  Aligned_cols=241  Identities=13%  Similarity=0.191  Sum_probs=181.6

Q ss_pred             CCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccceee
Q 001258          818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  895 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~  895 (1113)
                      ...+..+.|..+...|..|+....++|.................|..+-|+.   .++|..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            3456667788999999999966678888876554333333444577777875   4777666554  5999999988888


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E--cC
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE  972 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~--~d  972 (1113)
                      ..+. ....|.++.+.  .++|+++=.+. |+|||+++-+.     +.......+....+..+.+++.+.++|. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7765 45678899885  45676666555 99999998543     3222222221124555556666779998 3  56


Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
                      |.|.+||+.+.+.+..+.  .|.+++.+++|++||.+||++++.|+ ||||.+.+|+.+..|+-..+       .+.-..
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-------~~~IyS  223 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-------PVSIYS  223 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-------eeEEEE
Confidence            899999999999988887  89999999999999999999999998 89999999999998873222       333335


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1052 IAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1052 ~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ++|+| |+.+|++.++.++|++|.++...
T Consensus       224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  224 LSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            99999 78999999999999999998766

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.9e-15  Score=151.24  Aligned_cols=306  Identities=8%  Similarity=0.052  Sum_probs=208.3

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccC------CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  488 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  488 (1113)
                      -+.+|.+.|+++.||.++++||+|+.|..++||++..      .+.+..  .-..|...|.|++|...++  ++.+|+.+
T Consensus        51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~--~~~~H~SNIF~L~F~~~N~--~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV--MEHPHRSNIFSLEFDLENR--FLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee--ccCccccceEEEEEccCCe--eEecCCCc
Confidence            4779999999999999999999999999999999863      232321  1124668999999998888  79999999


Q ss_pred             CcEEEEeCCCCceeeEeec--cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258          489 KTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  566 (1113)
Q Consensus       489 ~~i~iwd~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  566 (1113)
                      ++|...|+++.+.+..+..  ..+.|..+..+|..  +.+++.+.+|.|.+||.+......         .-++....++
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~---------~~~~~AN~~~  195 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPI---------SLVLPANSGK  195 (609)
T ss_pred             ceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCC---------ceeeecCCCc
Confidence            9999999999998887752  34589999988874  689999999999999998643211         1111111111


Q ss_pred             eEEeccccCceeEEEecCCCC-EEEEEecCCcEEEEECCCCc-eEEEEc----cCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258          567 RTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQ-LLTSID----ADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1113)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~----~~~~~~~v~~~~~s~~~~~l~~~~~dg  640 (1113)
                               .+..+-|+|... .|++.+..+-+.+||.+... .+....    .......-.++.|+|+|+.+.+--...
T Consensus       196 ---------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~  266 (609)
T KOG4227|consen  196 ---------NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK  266 (609)
T ss_pred             ---------cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence                     334455565543 46677888899999986532 111111    111111235789999999888776666


Q ss_pred             cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeec
Q 001258          641 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  720 (1113)
Q Consensus       641 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  720 (1113)
                      .-.+||+.+..-.+..+. |......                                   ..-.....++.+...+++|
T Consensus       267 ~P~~~D~~S~R~~V~k~D-~N~~GY~-----------------------------------N~~T~KS~~F~~D~~v~tG  310 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSD-HNPNGYC-----------------------------------NIKTIKSMTFIDDYTVATG  310 (609)
T ss_pred             CCEEeeeecccceeEecc-CCCCcce-----------------------------------eeeeeeeeeeecceeeecc
Confidence            666777766422222221 1110000                                   0001112234455668899


Q ss_pred             cCCCceeeEeccCCCCCCcceeccc----------------CcccccCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258          721 ESNDKSKVWKLTELSEPNQCRSLRL----------------PENLRATKISRLIFTNSGNAILALASNAIHLLWKW  780 (1113)
Q Consensus       721 ~~d~~i~iw~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~  780 (1113)
                      +.+=.|.+|.++.......+..+.-                ...+|..-+..+.|+|...+|++.+-.+.+++|.-
T Consensus       311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence            9999999999986554333222111                11568888999999999999999999999999964

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3e-16  Score=162.29  Aligned_cols=306  Identities=11%  Similarity=0.144  Sum_probs=224.5

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  433 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  433 (1113)
                      +|.+.|+.|.|...|. +|++|+.|..|.+|||..++....                  ...||...|..-.|-|  +.+
T Consensus       140 ~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d~  200 (559)
T KOG1334|consen  140 KHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGDR  200 (559)
T ss_pred             CCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCCc
Confidence            4999999999999999 599999999999999999887654                  4678999999999988  567


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee---ccCc
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEA  510 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h~~  510 (1113)
                      .+++++.||.|++=.+.....+.....+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++.+.+...+.   .+..
T Consensus       201 ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~  279 (559)
T KOG1334|consen  201 TIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEK  279 (559)
T ss_pred             CceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCc
Confidence            8999999999999877654444444567789999999999999887 79999999999999999876554332   2333


Q ss_pred             ---CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          511 ---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       511 ---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                         ...+++..|... ..+++|+.|..+++||.+.......    .+.+.  .|.|+   .+.....-.|.+++|+.++.
T Consensus       280 ~~v~L~~Ia~~P~nt-~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~~s  349 (559)
T KOG1334|consen  280 ERVGLYTIAVDPRNT-NEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHDGS  349 (559)
T ss_pred             cceeeeeEecCCCCc-cccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCCcc
Confidence               456677766543 5899999999999999875332210    00000  11111   01112223566677776666


Q ss_pred             EEEEEecCCcEEEEECCC--C----------ceEEE-EccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          588 RFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                      -+++...|-.|++++-.-  |          ..+.. +++|.....|..+-| .|...++++|+.-|.|.||+-.++ +.
T Consensus       350 ElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-ei  428 (559)
T KOG1334|consen  350 ELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EI  428 (559)
T ss_pred             ceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HH
Confidence            788888888999996432  2          12223 667766667888875 578899999999999999999888 77


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ++.+++....+.+.                                         .--|.-..|++.+.|..|+||.-.+
T Consensus       429 i~~MegDr~VVNCL-----------------------------------------EpHP~~PvLAsSGid~DVKIWTP~~  467 (559)
T KOG1334|consen  429 IRFMEGDRHVVNCL-----------------------------------------EPHPHLPVLASSGIDHDVKIWTPLT  467 (559)
T ss_pred             HHHhhcccceEecc-----------------------------------------CCCCCCchhhccCCccceeeecCCc
Confidence            77777655433221                                         1124467789999999999998744

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5e-15  Score=166.64  Aligned_cols=202  Identities=17%  Similarity=0.188  Sum_probs=150.1

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---eeeee
Q 001258          823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSK  897 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~  897 (1113)
                      -+.|.....+|++++ -..|+|||.....+...+... ..-++++.-+...|+++++|..||.|++||.+..   ..+..
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            345665555555555 578999999987777766533 3457777766656899999999999999998753   35677


Q ss_pred             ecccccC--eEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258          898 LKGHSKR--ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  974 (1113)
Q Consensus       898 l~~h~~~--V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~  974 (1113)
                      .+.|++.  |..+.+-+.|-. |++|+.||.|++||++.....  ....+.. +....+..+++..+++...+|+|+-+.
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e--~~~~iv~-~~~yGs~lTal~VH~hapiiAsGs~q~ 1326 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE--TFLTIVA-HWEYGSALTALTVHEHAPIIASGSAQL 1326 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc--ccceeee-ccccCccceeeeeccCCCeeeecCcce
Confidence            8889988  999999887654 999999999999999884221  1222211 111112489999999999999987799


Q ss_pred             EEEEeCCccceeeccccC-----CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258          975 LAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
                      |.||++... .+..+...     -..+.+.|++|.|..-+||+|+.|.+|.||......
T Consensus      1327 ikIy~~~G~-~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1327 IKIYSLSGE-QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             EEEEecChh-hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            999998743 33333221     125678999999999999999999999999887654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=3.5e-15  Score=140.37  Aligned_cols=253  Identities=15%  Similarity=0.189  Sum_probs=173.3

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      .|.+-++||.+++ |++|..+|+|.+..+.+--.-..         ............+|.++|+.++|.  ..+|++|+
T Consensus        12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g   79 (325)
T KOG0649|consen   12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG   79 (325)
T ss_pred             HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence            4566789999995 99999999999999864211110         001111112357999999999997  56777776


Q ss_pred             CCCeEEEEEccCCce---eeeeee--eeccc-----CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          440 SRHIVQIYSYHGGDE---VRQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                       ||.|+=|....-..   .++..+  ...|.     -.|+++-..|...  -++.++.|+.++-||+++|+..++++||+
T Consensus        80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence             59999998764322   111001  11222     3589999998877  36666689999999999999999999999


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      +.|.++.-.  .....+++|+.||++++||.++.+....+..-.++-   ..-|+        -.  -+..++.-+..++
T Consensus       157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~---~lRp~--------~g--~wigala~~edWl  221 (325)
T KOG0649|consen  157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPN---LLRPD--------WG--KWIGALAVNEDWL  221 (325)
T ss_pred             ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccChh---hcCcc--------cC--ceeEEEeccCceE
Confidence            999999842  222579999999999999999987776554322110   00111        11  1223333444567


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      ++|+ ...+.+|++++.++...+....+   +..+.|..  ..+++++..+.+.-|.+.
T Consensus       222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~~--d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFVD--DCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EecC-CCceeEEeccCCCceEEEecccc---eeEeeeec--ceEEEeccccceeeeeec
Confidence            7665 56899999999999888876644   66677754  467777777788888664

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=3.4e-16  Score=165.19  Aligned_cols=246  Identities=16%  Similarity=0.225  Sum_probs=182.9

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECC--------CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  887 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--------~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw  887 (1113)
                      |...|++++|.+-...|++++ ||+|.+|+++        ..+.+.+|++|.++|.|+++++ .+..+.+|+.||.|+.|
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w  371 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGIDGTIRCW  371 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeeccCceeeee
Confidence            888999999999999999999 9999999993        2346788999999999999999 89999999999999999


Q ss_pred             Ecccc----------eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258          888 NVRVD----------EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  957 (1113)
Q Consensus       888 d~~~~----------~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  957 (1113)
                      ++...          .....+.||.+.|+.+++|+....|++++.||+|++|+.......   .......+    +....
T Consensus       372 ~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~---~f~~~~e~----g~Pls  444 (577)
T KOG0642|consen  372 NLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPC---TFGEPKEH----GYPLS  444 (577)
T ss_pred             ccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCcc---ccCCcccc----CCcce
Confidence            76421          234678899999999999999999999999999999998774431   11111111    12234


Q ss_pred             EEEccCC-cEEEE-EcCCeEEEEeCCccceeeccccCCC-----CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258          958 VQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRES-----SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus       958 ~~~spdg-~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h-----~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
                      +.+-... ...++ ..-+.--+++...+..+..+....-     ...+..+.+.|.+.+.+++-.|+.|+++|..+++++
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence            4443322 11111 1222222334444444333332111     245777888999999999999999999999999999


Q ss_pred             eecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1031 CRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1031 ~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ....       .|-..+++  +++.| +|-+|++++.||.+++|++....
T Consensus       525 ~s~~-------a~~~svts--lai~~-ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  525 HSMV-------AHKDSVTS--LAIDP-NGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             hhee-------eccceecc--eeecC-CCceEEeecCCceeehhhccchh
Confidence            7765       66677776  66667 67899999999999999986544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.67  E-value=5.2e-13  Score=151.85  Aligned_cols=151  Identities=17%  Similarity=0.312  Sum_probs=125.1

Q ss_pred             EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1113)
Q Consensus       364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1113)
                      +.++++.-| +++|+.-+.|++|++...+.-.                   .+.||.+.|.++.||-||+++++.|+|.+
T Consensus       139 ~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRs  198 (967)
T KOG0974|consen  139 IGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRS  198 (967)
T ss_pred             EeccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcc
Confidence            345666665 9999999999999987322211                   38899999999999999999999999999


Q ss_pred             EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCC
Q 001258          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKEN  522 (1113)
Q Consensus       444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~  522 (1113)
                      +++|++.+.+...  .+.-+|+.+|+.++|.|+ .   ++|++.|.+.++|+ ..+..+..+.+|. ..|+.++...  +
T Consensus       199 iRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~~--~  269 (967)
T KOG0974|consen  199 IRLWPIDSREVLG--CTGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVPI--G  269 (967)
T ss_pred             eeeeecccccccC--cccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEcC--C
Confidence            9999999988765  256689999999999998 4   99999999999997 4566666888886 5678887644  3


Q ss_pred             ceEEEEEecCCcEEEEEcCCC
Q 001258          523 IQFIFSTALDGKIKAWLYDNL  543 (1113)
Q Consensus       523 ~~~l~s~~~dg~i~iwd~~~~  543 (1113)
                      ...++|++.|+.+++||+...
T Consensus       270 ~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  270 VIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             ceEEEeeccCcchhhhhhhcc
Confidence            378999999999999998753

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=2.9e-14  Score=137.96  Aligned_cols=244  Identities=15%  Similarity=0.226  Sum_probs=175.7

Q ss_pred             CCCCccEEEEecCCC----EEEEEeCCeEEEEECCCC--cee--eee-----cCCCCCeeEEEEecCCCcEEEEEecCCc
Q 001258          817 PEEAVPCFALSKNDS----YVMSASGGKISLFNMMTF--KTM--ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS  883 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~----~l~~~sdg~i~vwd~~~~--~~~--~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~  883 (1113)
                      |..+++.+-|.|+.+    -+++.++..+|+|.+...  +..  ..+     ..+..++++..|+..+.+++.+.+-|-+
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTT  174 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTT  174 (364)
T ss_pred             CCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCe
Confidence            889999999999874    244445678999998732  111  111     2345689999999888899999999999


Q ss_pred             EEEEEcccce---eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258          884 IQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  959 (1113)
Q Consensus       884 v~iwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  959 (1113)
                      ..|||+.++.   +...+-+|...|..++|..++ +.+||+|.||.||++|++.-+-.  ..+  .++. .+..+...++
T Consensus       175 CTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TII--YE~p-~~~~pLlRLs  249 (364)
T KOG0290|consen  175 CTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TII--YEDP-SPSTPLLRLS  249 (364)
T ss_pred             EEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEE--ecCC-CCCCcceeec
Confidence            9999999863   457788999999999999865 57899999999999999884321  111  1111 1124677888


Q ss_pred             Ecc-CCcEEEE-E-cCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          960 FHQ-DQIHFLV-V-HETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       960 ~sp-dg~~l~~-~-~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      |++ |-.++|+ . ....|.+.|++... .+..+  .+|.+.|..++|.|.. ..|.++++|..+-+||+...-.-....
T Consensus       250 wnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d  327 (364)
T KOG0290|consen  250 WNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED  327 (364)
T ss_pred             cCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence            887 4557777 4 44579999987543 23333  4899999999999965 579999999999999997643311111


Q ss_pred             C-CcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258         1035 P-SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus      1035 ~-~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
                      + -+|   ...++|..  +.|+|..+++++.+. ++++.+
T Consensus       328 Pilay---~a~~EVNq--i~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  328 PILAY---TAGGEVNQ--IQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             chhhh---hccceeee--eeecccCCCEEEEEe-cCeeeE
Confidence            1 122   23456775  888888889998876 344444

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=2.3e-13  Score=136.76  Aligned_cols=228  Identities=17%  Similarity=0.197  Sum_probs=153.7

Q ss_pred             CCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC---CCCeeEEEEecCCCcEEEEEe--cCCcEEEEEccc
Q 001258          817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP---PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRV  891 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~  891 (1113)
                      ....|.++.+  +.+.|++.-.+.|.|||+++.+.+.++...   ...+.++.++. ++.+||.=+  ..|.|.|||+.+
T Consensus        86 fpt~IL~Vrm--Nr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   86 FPTSILAVRM--NRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             cCCceEEEEE--ccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEEEEEccc
Confidence            4566777777  566788887777999999999999887543   34455666665 566888643  568999999999


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      -+.+..+..|.+.+.+|+|+++|.+|||+|.-|+ |||+.+.+++.                                  
T Consensus       163 l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k----------------------------------  208 (391)
T KOG2110|consen  163 LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK----------------------------------  208 (391)
T ss_pred             ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE----------------------------------
Confidence            9999999999999999999999999999999887 46777765432                                  


Q ss_pred             cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC--------------C
Q 001258          971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP--------------S 1036 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~--------------~ 1036 (1113)
                                     +.+|..+--...|.+++|+||+.+|++.+..++|.||.+++-..-..-.+              .
T Consensus       209 ---------------l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~  273 (391)
T KOG2110|consen  209 ---------------LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAAT  273 (391)
T ss_pred             ---------------eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhh
Confidence                           22222111134678889999999998888889999998865331100000              0


Q ss_pred             cccCCCc----------------ccCccceEEEEeC-CCCCEEEEEeCCCcEEEEeccCC--CccccCCCCCCCCCCCCC
Q 001258         1037 AYLPAGV----------------SSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLES--EGKWGVPPPVDNGSTSSM 1097 (1113)
Q Consensus      1037 ~~~~~gh----------------~~~v~~i~~~~~p-~d~~~l~s~~~Dg~v~vW~~~~~--~~~~~~~~~~~~~~~~~~ 1097 (1113)
                      .|+|..-                .+.... .+++.+ ....++..++.||.++.+.++-.  .+.+-+.+-+-.++..+.
T Consensus       274 sylps~V~~~~~~~R~FAt~~l~~s~~~~-~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t~  352 (391)
T KOG2110|consen  274 SYLPSQVSSVLDQSRKFATAKLPESGRKN-ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDTS  352 (391)
T ss_pred             hhcchhhhhhhhhccceeEEEccCCCccc-eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCccccc
Confidence            0111100                001111 122322 24578888999999999988653  355555555545544444

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.66  E-value=2.6e-14  Score=163.78  Aligned_cols=212  Identities=11%  Similarity=0.107  Sum_probs=150.7

Q ss_pred             cccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCC----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258          415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  489 (1113)
                      .+..|...|..++.++.. .++++||.||+|++||...-    ...+...++......+.++.+.+.+.  .+|.++.||
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence            478899999999998854 99999999999999998631    22333345555677899999999999  688889999


Q ss_pred             cEEEEeCCC--Cce-----eeEeecc-CcCEEEE-eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEE
Q 001258          490 TIKVWDATN--GAK-----QYIFEGH-EAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTT  558 (1113)
Q Consensus       490 ~i~iwd~~~--~~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~  558 (1113)
                      .|++.++..  .+.     .+....+ .+.+.++ ++........++.+..-+.|..||++.......+.  ...+    
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG---- 1196 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG---- 1196 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc----
Confidence            999999875  221     1222222 2334443 33322222378888899999999998765544332  2233    


Q ss_pred             EEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC---CCEEEE
Q 001258          559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAV  635 (1113)
Q Consensus       559 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~  635 (1113)
                                       .++.++.+|.+++++.|+..|.+.+||++-+.++.......+ ..+..+..+|-   ....++
T Consensus      1197 -----------------~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs 1258 (1431)
T KOG1240|consen 1197 -----------------LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVS 1258 (1431)
T ss_pred             -----------------ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEE
Confidence                             444555555666899999999999999999999888875554 56777777662   244444


Q ss_pred             EE--CCCcEEEEEcCCC
Q 001258          636 ST--NDNGIKILATSDG  650 (1113)
Q Consensus       636 ~~--~dg~i~iwd~~~~  650 (1113)
                      ++  ..+.|.+|++.+|
T Consensus      1259 ~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1259 AGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ecccCCCceeeeecccC
Confidence            44  4678999999988

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=1e-14  Score=141.12  Aligned_cols=252  Identities=16%  Similarity=0.257  Sum_probs=184.7

Q ss_pred             ccCCCCcEEEEEcCCCC----eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          355 LNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~----~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      +.|.-+++.+.|.|+.+    .|||+.  +..+++|.+...+.....          ...+....-..+.+++++..|+.
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWne  160 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWNE  160 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceeh----------hhhhccCcccccCCccccccccc
Confidence            57999999999999873    357764  458999998753222110          01111112445778999999998


Q ss_pred             -CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---e
Q 001258          431 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---E  506 (1113)
Q Consensus       431 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~  506 (1113)
                       |-++|.+++-|-+..|||++++..-.....|-+|...|..|+|...+.+ +|++.|.||+||++|++.-+--..+   .
T Consensus       161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence             8889999999999999999997442222357799999999999998887 8999999999999999865432222   2


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCC-cEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      ....+...++|+.. |-+++++-..|. .|.+-|++... ....+..|...|..++|.|...                  
T Consensus       240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~------------------  300 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS------------------  300 (364)
T ss_pred             CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC------------------
Confidence            22456777888654 446888887765 58999998754 4557889999999999999775                  


Q ss_pred             CCCEEEEEecCCcEEEEECCCCce------EEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEE
Q 001258          585 TKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  644 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  644 (1113)
                        ..+++++.|..+.+||+.+.-.      +..+.   ...+|+.+.|++ .+..++++.. +.+.+
T Consensus       301 --~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  301 --SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             --ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence              3589999999999999976322      22222   234799999997 5667777665 44444

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.66  E-value=2.3e-14  Score=160.75  Aligned_cols=286  Identities=14%  Similarity=0.150  Sum_probs=194.2

Q ss_pred             CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce--eeE----eeccCcCEEE
Q 001258          441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYS  514 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~--~~~----~~~h~~~v~~  514 (1113)
                      ++.+.||+++......  ..+ .-...|.|++|+|.... +++.|..+|.|.+||++.+..  ...    ...|..++..
T Consensus       221 ~~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~  296 (555)
T KOG1587|consen  221 DGVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA  296 (555)
T ss_pred             CceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE
Confidence            3479999999863222  233 34668999999999887 789999999999999987655  222    2358889999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      +.|..+..+.-+++++.||.|..|+++.........                                      + ... 
T Consensus       297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~--------------------------------------~-~~~-  336 (555)
T KOG1587|consen  297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGL--------------------------------------L-LES-  336 (555)
T ss_pred             EEEeccCCCCceEEEecCCcEeeeeccccccchhhc--------------------------------------c-ccc-
Confidence            988776655568888889999999766422211000                                      0 000 


Q ss_pred             CCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCC
Q 001258          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  673 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1113)
                        ..     ..+   ...   .....+++++|.+ +-..+++|+.+|.|.--+.........                  
T Consensus       337 --~~-----~~~---~~~---~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------------------  385 (555)
T KOG1587|consen  337 --KK-----HKG---QQS---SKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------------------  385 (555)
T ss_pred             --cc-----ccc---ccc---ccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc------------------
Confidence              00     000   000   1123467888888 567788999998876532211100000                  


Q ss_pred             CcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc
Q 001258          674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  753 (1113)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  753 (1113)
                                                                                                      
T Consensus       386 --------------------------------------------------------------------------------  385 (555)
T KOG1587|consen  386 --------------------------------------------------------------------------------  385 (555)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE-
Q 001258          754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-  832 (1113)
Q Consensus       754 i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~-  832 (1113)
                         +.|.+...                                               .  ..|.+.|+++.++|-+.. 
T Consensus       386 ---~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~  413 (555)
T KOG1587|consen  386 ---VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKN  413 (555)
T ss_pred             ---cccccccc-----------------------------------------------c--cccCcceEeeecCCCccce
Confidence               00000000                                               0  016777888888887654 


Q ss_pred             EEEEeCCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc--ceeeeeecccccCeEEEE
Q 001258          833 VMSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLA  909 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l~~h~~~V~~l~  909 (1113)
                      +.+++|.+++||... ....+..+..+...+++++|||....+++++..||.+.|||+..  ...+.+..-+....+.+.
T Consensus       414 fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~  493 (555)
T KOG1587|consen  414 FLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVR  493 (555)
T ss_pred             eeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceee
Confidence            444458999999987 66666677777778999999997778999999999999999975  344455555567778889


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          910 FSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       910 ~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      |+++|+.|+.|+..|++.+|++..
T Consensus       494 ~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  494 WSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             cCCCCcEEEEecCCCcEEEEEcCc
Confidence            999999999999999999999965

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=3.9e-15  Score=152.45  Aligned_cols=200  Identities=17%  Similarity=0.194  Sum_probs=153.8

Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc
Q 001258          863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL  942 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~  942 (1113)
                      .+++|+. +|..|++|+.||.+|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+++++....... 
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t-  224 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT-  224 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC-
Confidence            7899999 89999999999999999998888888888899999999999999999999999 79999999974322111 


Q ss_pred             ccCCCCCCCCCCCceEEEccCC---c-EEEEE--cCCeEEEEeCCccce---eeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258          943 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLVV--HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       943 ~~~~~~~~~~~~i~~~~~spdg---~-~l~~~--~d~~v~v~d~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                        +.+.   .-....+.|+.|+   . ++++.  .-+.|+.|++.....   .+....-.-...|++++.|+||++++.|
T Consensus       225 --~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  225 --PFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             --Cccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence              1111   1245678888877   3 33332  345666666543222   1111100114579999999999999999


Q ss_pred             eCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258         1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1014 ~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                      +.||.|.|++..+.+.+.-      .+..|..-|+.  +.|+| |.+++++.+.|.+..|..+.-.
T Consensus       300 T~dGsVai~~~~~lq~~~~------vk~aH~~~VT~--ltF~P-dsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQY------VKEAHLGFVTG--LTFSP-DSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             ccCCcEEEEEeceeeeeEe------ehhhheeeeee--EEEcC-CcCcccccccCCceeEEEEeec
Confidence            9999999999988777643      55688888886  89999 7889999999999999988763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=2.2e-14  Score=141.01  Aligned_cols=251  Identities=14%  Similarity=0.141  Sum_probs=177.4

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      -..+|+|.+|++|+.. +|++.....|.||.......-.                ...++..|...|++++|+|....|+
T Consensus         9 ~~~pitchAwn~drt~-iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv   71 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQ-IAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV   71 (361)
T ss_pred             ccCceeeeeecCCCce-EEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence            3578999999999995 8999999999999987654211                2236889999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee----eEeeccCcCE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPV  512 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v  512 (1113)
                      +|+.|..-+||....+...++...+..|...+++|.|+|.+.  .|++||.-+.|.||-.+...--    +.-+.+...|
T Consensus        72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence            999999999999965555667778888999999999999999  7999999999999987754321    1223467889


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec-cccCceeEEEecCCCCEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      .++.|++++  -+++.|+.|+..+++..--.. +-+-+.....-..+   |-|..+... ...+-+..+.|+|+|+.|+-
T Consensus       150 ~sldWhpnn--VLlaaGs~D~k~rVfSayIK~-Vdekpap~pWgsk~---PFG~lm~E~~~~ggwvh~v~fs~sG~~law  223 (361)
T KOG1523|consen  150 TSLDWHPNN--VLLAAGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKM---PFGQLMSEASSSGGWVHGVLFSPSGNRLAW  223 (361)
T ss_pred             eeeeccCCc--ceecccccCcceeEEEEeeec-cccCCCCCCCccCC---cHHHHHHhhccCCCceeeeEeCCCCCEeeE
Confidence            999999765  689999999999999542100 00000000000000   011111111 23445667888888889999


Q ss_pred             EecCCcEEEEECCCCc-eEEEEccCCCCCCcCeEEECCCCCEEE
Q 001258          592 AGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLA  634 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~  634 (1113)
                      .+.|..+.+-|..... .+..+....  -+..++.|-.+...++
T Consensus       224 v~Hds~v~~~da~~p~~~v~~~~~~~--lP~ls~~~ise~~vv~  265 (361)
T KOG1523|consen  224 VGHDSTVSFVDAAGPSERVQSVATAQ--LPLLSVSWISENSVVA  265 (361)
T ss_pred             ecCCCceEEeecCCCchhccchhhcc--CCceeeEeecCCceee
Confidence            9999999999987654 233332221  2455666665544333

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.63  E-value=1.4e-14  Score=151.37  Aligned_cols=208  Identities=17%  Similarity=0.222  Sum_probs=161.1

Q ss_pred             CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee
Q 001258          713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT  792 (1113)
Q Consensus       713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  792 (1113)
                      ..+.++.++.||.+.+.+-....    .+.    -..|.+.+.+-.|+|||.-|++++.||.|++|.-.           
T Consensus        74 ~~d~~~i~s~DGkf~il~k~~rV----E~s----v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-----------  134 (737)
T KOG1524|consen   74 GSDTLLICSNDGRFVILNKSARV----ERS----ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-----------  134 (737)
T ss_pred             CcceEEEEcCCceEEEecccchh----hhh----hhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-----------
Confidence            34678888999988877643211    111    13488999999999999999999999999999743           


Q ss_pred             eeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCC
Q 001258          793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN  872 (1113)
Q Consensus       793 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  872 (1113)
                                  |-+... +..  ....|+|++|.|+...++.+..+.+.+=.+.....+...+.|++-|.++.|++ -+
T Consensus       135 ------------GMLRSt-l~Q--~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~-~s  198 (737)
T KOG1524|consen  135 ------------GMLRST-VVQ--NEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWST-QS  198 (737)
T ss_pred             ------------chHHHH-Hhh--cCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEEEeecCc-cc
Confidence                        222211 111  57789999999999999999889999988887778888899999999999999 78


Q ss_pred             cEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      .++++|++|-..+|||.. |..+..-..|.-+|++++|.|| +.++.+|. .++++=..                   ..
T Consensus       199 ~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p-------------------~~  256 (737)
T KOG1524|consen  199 NIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSP-------------------RV  256 (737)
T ss_pred             cceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeee-eeeeecCC-------------------Cc
Confidence            999999999999999965 6667777789999999999999 55554443 23441111                   12


Q ss_pred             CCCceEEEccCCcEEEEE-cCCeEEE
Q 001258          953 QSDTRVQFHQDQIHFLVV-HETQLAI  977 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~~-~d~~v~v  977 (1113)
                      +.|..++||+||..++++ ..|.+.+
T Consensus       257 GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             cceEEEEEcCCCceeeccccCceEEE
Confidence            588999999999999984 6665543

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=4.9e-15  Score=151.70  Aligned_cols=198  Identities=16%  Similarity=0.173  Sum_probs=159.5

Q ss_pred             cEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258          822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  900 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  900 (1113)
                      .+++|+.+|..|++++ ||++|||+..+...+.....|...|.++.||| ||++|++-+.| ..+||++.++..++....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999998 99999999888888888888999999999999 99999999999 999999999977766653


Q ss_pred             c--ccCeEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCccccc-cccccCCCCCCCCCCCceEEEccCCcEEEEE-c
Q 001258          901 H--SKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  971 (1113)
Q Consensus       901 h--~~~V~~l~~s~d~-----~~L~s~s~D~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~  971 (1113)
                      .  ......+.|+.|+     ...++...-+.|+.|++........ ...+....+    ..|.+++.|+||++++.+ .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence            2  2345667888777     3344445566788888766443110 011111111    368999999999999995 8


Q ss_pred             CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      ||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999887655 58999999999999999999999999999988754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=4.2e-15  Score=155.53  Aligned_cols=238  Identities=11%  Similarity=0.159  Sum_probs=173.0

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--C
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  431 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  431 (1113)
                      +-+|.+-|+|++|+.||. +|++||.|-.+.|||+...+.++.                  +-.||.+.|.++.|-|  +
T Consensus        46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence            346999999999999999 699999999999999998777764                  5789999999999999  6


Q ss_pred             CCeEEEEeCCCeEEEEEccCCc-------eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-ee
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY  503 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~  503 (1113)
                      .+.+++|..|..|+++|+...+       ...+...+..|...|.-|+-.|++.. .+.+++.||+|+-+|++.... -.
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence            7889999999999999998521       12233356789999999999999966 799999999999999986321 11


Q ss_pred             ---------EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee-----eeCCCCceEEEE-EccCCCeE
Q 001258          504 ---------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMA-YSADGTRT  568 (1113)
Q Consensus       504 ---------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~-~s~~~~~~  568 (1113)
                               .+....-...++.++|... .+|+.|+.|-..++||.+...+...     ...+.....++. |+|.+-..
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                     1112223456777777655 6999999999999999643222110     011111222232 34443322


Q ss_pred             EeccccC---ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258          569 YQGFRKR---SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  612 (1113)
Q Consensus       569 ~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  612 (1113)
                      ..+....   ....+.|+|+|..|++.-....|+++|+..++....+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            2332222   2456889999988888777789999999988765554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=1.9e-13  Score=156.87  Aligned_cols=269  Identities=14%  Similarity=0.149  Sum_probs=178.3

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      +.++..|...|..++.++...-++++||.||+|++||...-+.-. ..++           ...++.-....+.++.+.+
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~r-----------S~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSAR-----------SELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-ceee-----------eeEEEeccCCceEEEEecc
Confidence            344455999999999987763379999999999999986422210 0000           0012333467899999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCC--ceee--eeeeeecc--cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~--~~~~--~~~~l~~h--~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  504 (1113)
                      .|..+|+++.||.|++.++.-.  ....  +....+.+  ...|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            9999999999999999998762  1111  11111222  2234444565544433677888889999999988776655


Q ss_pred             ee--ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEE
Q 001258          505 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       505 ~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      ++  -..+.|++++.++.  +.++++|+..|.+.+||++-...+..+..+. .++..+...|-..               
T Consensus      1189 lk~~~~hG~vTSi~idp~--~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~--------------- 1251 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPW--CNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYP--------------- 1251 (1431)
T ss_pred             hhcCccccceeEEEecCC--ceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCC---------------
Confidence            54  24578999997654  4799999999999999999776666544332 3455554443221               


Q ss_pred             ecCCCCEEEEE-e-cCCcEEEEECCCCceEEEEccCCC-----------------CCCcCeEEECCCCCEEEEEECCCcE
Q 001258          582 FDTTKNRFLAA-G-DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI  642 (1113)
Q Consensus       582 ~~~~~~~l~~~-~-~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i  642 (1113)
                         .....+++ + ..+.|.+|++.+|.+...+.....                 .-....+.+...+.++.+|+.|..|
T Consensus      1252 ---~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1252 ---QESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred             ---CCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence               22234443 3 578899999999877666643210                 0111233344456789999999999


Q ss_pred             EEEEcCCCc
Q 001258          643 KILATSDGI  651 (1113)
Q Consensus       643 ~iwd~~~~~  651 (1113)
                      +.||.....
T Consensus      1329 R~wD~~~p~ 1337 (1431)
T KOG1240|consen 1329 RKWDPTRPE 1337 (1431)
T ss_pred             eeccCCCcc
Confidence            999988763

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.61  E-value=3.7e-14  Score=139.46  Aligned_cols=208  Identities=15%  Similarity=0.191  Sum_probs=160.0

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001258          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-  499 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-  499 (1113)
                      .+|+|.+|++|+..+|.+-....|.||.....+......++..|...|+.|+|+|...  .|++|+.|..-+||....+ 
T Consensus        11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             CceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCCC
Confidence            4899999999999999999999999999998887777789999999999999999998  5999999999999998433 


Q ss_pred             --ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          500 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       500 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                        ++...+..+....+++.|+|..  +.+++|+.-..|.+|-++..+.=..-.....+                 ....+
T Consensus        89 ~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkP-----------------irStv  149 (361)
T KOG1523|consen   89 TWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKP-----------------IRSTV  149 (361)
T ss_pred             eeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCc-----------------cccce
Confidence              3445666788999999998776  58999999999999977643221110000011                 11234


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECC-----C-------------CceEEEEccCCCCCCcCeEEECCCCCEEEEEECC
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  639 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  639 (1113)
                      .+++|+|++-.|++|+.|+..+++..-     +             |+++..+.  ...+.+..+.|+|+|..|+-.+.|
T Consensus       150 ~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hd  227 (361)
T KOG1523|consen  150 TSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHD  227 (361)
T ss_pred             eeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCC
Confidence            556666666689999999999998641     1             11222222  223578999999999999999999


Q ss_pred             CcEEEEEcCCCc
Q 001258          640 NGIKILATSDGI  651 (1113)
Q Consensus       640 g~i~iwd~~~~~  651 (1113)
                      ..+.+-|.....
T Consensus       228 s~v~~~da~~p~  239 (361)
T KOG1523|consen  228 STVSFVDAAGPS  239 (361)
T ss_pred             CceEEeecCCCc
Confidence            999999877664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.59  E-value=7.6e-14  Score=146.37  Aligned_cols=247  Identities=15%  Similarity=0.141  Sum_probs=171.5

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceee------eecCCCCCeeEEEE-----ecCCCcEEEEEecCCcEEEEE
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA------TFMPPPPAATFLAF-----HPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~------~~~~~~~~i~~l~~-----s~~d~~~la~g~~dg~v~iwd  888 (1113)
                      .+.....+-.|++|+..-...+.+|+...+..+.      .+.+  ...+|=+|     .+ ++--|.+|-..|.|++.|
T Consensus       125 ~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~-~g~dllIGf~tGqvq~id  201 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATP-KGLDLLIGFTTGQVQLID  201 (636)
T ss_pred             ceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCC-CCcceEEeeccCceEEec
Confidence            3445556667888888777889999987533221      1222  22333333     24 556677899999999998


Q ss_pred             cccceeeeeec----ccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccc---------cccccCCCC------
Q 001258          889 VRVDEVKSKLK----GHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKN---------RFLQIPTGR------  948 (1113)
Q Consensus       889 ~~~~~~~~~l~----~h~~~V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~---------~~~~~~~~~------  948 (1113)
                      ....+..+.+.    -....|+++.|-|.+.. ++.+-.+|.++++|..-......         ....+....      
T Consensus       202 p~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rN  281 (636)
T KOG2394|consen  202 PINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRN  281 (636)
T ss_pred             chhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCC
Confidence            76532222111    13478999999986544 44455789999997532110000         000000000      


Q ss_pred             -----CCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 001258          949 -----TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVF 1022 (1113)
Q Consensus       949 -----~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vw 1022 (1113)
                           ....+.|...+|+|||++||+ +.||.++|||..+.+++..+.  ..-+...|++|||||+||++|+.|-.|.||
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk--SYFGGLLCvcWSPDGKyIvtGGEDDLVtVw  359 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK--SYFGGLLCVCWSPDGKYIVTGGEDDLVTVW  359 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH--hhccceEEEEEcCCccEEEecCCcceEEEE
Confidence                 001246789999999999999 799999999999988876654  335689999999999999999999999999


Q ss_pred             ecCCCceeeecCCCcccCCCcccCccceEEEEeC----------------------------------C-----------
Q 001258         1023 SAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHP----------------------------------Q----------- 1057 (1113)
Q Consensus      1023 d~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p----------------------------------~----------- 1057 (1113)
                      .+...+.+++-+       ||.+.|..  ++|.|                                  .           
T Consensus       360 Sf~erRVVARGq-------GHkSWVs~--VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~  430 (636)
T KOG2394|consen  360 SFEERRVVARGQ-------GHKSWVSV--VAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRI  430 (636)
T ss_pred             EeccceEEEecc-------ccccceee--EeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccc
Confidence            999999998876       89998886  55541                                  0           


Q ss_pred             --CCCEEEEEeCCCcEEEEeccCCC
Q 001258         1058 --EPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1058 --d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                        ...++.+.+.|-.+.+||+....
T Consensus       431 ~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  431 NSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             cceEEEeecccccceEEEEecchhh
Confidence              12357889999999999999877

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=2.7e-12  Score=141.01  Aligned_cols=327  Identities=13%  Similarity=0.153  Sum_probs=193.4

Q ss_pred             EEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC
Q 001258          525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  604 (1113)
Q Consensus       525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  604 (1113)
                      ++++-..+|.|.+.|..+.+....+.........+.+++||+                     ++++.+.||.|.++|+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr---------------------~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGR---------------------YLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SS---------------------EEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCC---------------------EEEEEcCCCeEEEEECC
Confidence            345666789999999998777777765544434455666665                     68888899999999999


Q ss_pred             CCceEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhh
Q 001258          605 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA  683 (1113)
Q Consensus       605 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1113)
                      +++.+..+....   ...++++++||++++++. .++.+.++|..+. +.++.+.......                   
T Consensus        67 ~~~~v~~i~~G~---~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~-------------------  123 (369)
T PF02239_consen   67 TGKVVATIKVGG---NPRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV-------------------  123 (369)
T ss_dssp             SSSEEEEEE-SS---EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred             cccEEEEEecCC---CcceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence            999999987543   357899999999998775 5889999999887 4554442211100                   


Q ss_pred             hhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCC
Q 001258          684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  763 (1113)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~  763 (1113)
                                                                                      .....++.++..+|..
T Consensus       124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen  124 ----------------------------------------------------------------DGPESRVAAIVASPGR  139 (369)
T ss_dssp             ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred             ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence                                                                            0023456777778888


Q ss_pred             ceEEEeecC-CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCe
Q 001258          764 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK  840 (1113)
Q Consensus       764 ~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~  840 (1113)
                      ..++..-.+ +.|.+-|......                     +....+.   .........|+|++++++++.  ++.
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~~~---------------------~~~~~i~---~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDPKN---------------------LKVTTIK---VGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTSSC---------------------EEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CEEEEEEccCCeEEEEEeccccc---------------------cceeeec---ccccccccccCcccceeeecccccce
Confidence            756555554 7776655442100                     0000010   234456789999999988876  689


Q ss_pred             EEEEECCCCceeeeecC----CCCCeeEE-------EEec-CCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEE
Q 001258          841 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHP-QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  908 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~~~----~~~~i~~l-------~~s~-~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  908 (1113)
                      |.++|..+++.+..+..    |..+...+       .|.- ..+...++.-....+.+||..+++.++++....+. ..+
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi  274 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI  274 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence            99999998877765432    22222222       1211 02222222223345667888888888888776555 677


Q ss_pred             EEcCCCCEEEEE----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc
Q 001258          909 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  984 (1113)
Q Consensus       909 ~~s~d~~~L~s~----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~  984 (1113)
                      ..+|++++|...    ...++|.++|.                                                 ++.+
T Consensus       275 ~thP~s~~vwvd~~~~~~~~~v~viD~-------------------------------------------------~tl~  305 (369)
T PF02239_consen  275 KTHPDSRYVWVDTFLNPDADTVQVIDK-------------------------------------------------KTLK  305 (369)
T ss_dssp             E--TT-SEEEEE-TT-SSHT-EEEEEC-------------------------------------------------CGTE
T ss_pred             ecCCCCccEEeeccCCCCCceEEEEEC-------------------------------------------------cCcc
Confidence            778888887765    22244555554                                                 4444


Q ss_pred             eeeccccCCCCCCeeEEEECCCCCEEEEEeCC--CcEEEEecCCCceeeecC
Q 001258          985 CVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .+..+.... ...+..+.|++||+++.....+  +.|.|||..+.+++.++.
T Consensus       306 ~~~~i~~~~-~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  306 VVKTITPGP-GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             EEE-HHHHH-T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             eeEEEeccC-CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence            444433211 2348899999999986654443  369999999999998876

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-13  Score=156.82  Aligned_cols=214  Identities=14%  Similarity=0.108  Sum_probs=151.1

Q ss_pred             CCCCccEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE--Ec
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY--NV  889 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw--d~  889 (1113)
                      +...+.+.+|+|||+.|+..+ +   ..|++||+.+++.... .........++|+| ||+.|+.+. .+|.+.||  |+
T Consensus       202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSP-DGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECC-CCCEEEEEEecCCcEEEEEEEC
Confidence            567789999999999999876 2   3699999988754222 21223345789999 888777664 67866555  66


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                      .+++ ...+..|...+.+.+|+|||+.|+.++ .++...||+++....... .+    .+.    . ....|+|||++++
T Consensus       280 ~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l----~~~----~-~~~~~SpDG~~ia  348 (429)
T PRK01742        280 NGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV----GGR----G-YSAQISADGKTLV  348 (429)
T ss_pred             CCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee----cCC----C-CCccCCCCCCEEE
Confidence            5554 456667777889999999999877655 578888888764322111 11    111    1 3568999999998


Q ss_pred             EEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec--CCCceeeecCCCcccCCCcccC
Q 001258          969 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--ANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus       969 ~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~--~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
                      +.....+.+||+.+++......  .  ....++.|+|||++|+.++.++.+.+|.+  .+|+...++.       +|.+.
T Consensus       349 ~~~~~~i~~~Dl~~g~~~~lt~--~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-------~~~g~  417 (429)
T PRK01742        349 MINGDNVVKQDLTSGSTEVLSS--T--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP-------GSDGQ  417 (429)
T ss_pred             EEcCCCEEEEECCCCCeEEecC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc-------CCCCC
Confidence            8655667779999887643322  1  13356889999999999999999888876  3577777765       66666


Q ss_pred             ccceEEEEeC
Q 001258         1047 VHPLVIAAHP 1056 (1113)
Q Consensus      1047 v~~i~~~~~p 1056 (1113)
                      +..  .+|+|
T Consensus       418 ~~~--p~wsp  425 (429)
T PRK01742        418 VKF--PAWSP  425 (429)
T ss_pred             CCC--cccCC
Confidence            553  67777

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.57  E-value=5.7e-13  Score=152.19  Aligned_cols=224  Identities=13%  Similarity=0.139  Sum_probs=148.0

Q ss_pred             CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceee
Q 001258          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR  456 (1113)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~  456 (1113)
                      +..|.|||.......                    .+..|...|.+.+|||||++|+.++.+   ..|.+||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            468999998754422                    256678889999999999999987654   469999999876432


Q ss_pred             eeeeeecccCCeeEEEEcCCCCeeEEEE-ecCCCcEEEE--eCCCCceeeEeeccCcCEEEEeeeecCCceEEEE-EecC
Q 001258          457 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS-TALD  532 (1113)
Q Consensus       457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s-~s~d~~i~iw--d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s-~~~d  532 (1113)
                       +..+.+|   ..+++|+|||+.  |+. .+.++.+.||  |+.++. +..+..+...+...+|++  ||..|+. ...+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2233344   447899999994  544 4567776555  655554 455666777777788765  4565554 4467


Q ss_pred             CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE
Q 001258          533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  612 (1113)
Q Consensus       533 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  612 (1113)
                      |...+|++...........+..  .                     ...|+|++++++..+.++ +.+||+.+++.....
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~---------------------~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--Y---------------------SAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS  369 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--C---------------------CccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence            8889998764332211111111  1                     234566666777776654 666999888765332


Q ss_pred             ccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC--CCccceecccccc
Q 001258          613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLA  661 (1113)
Q Consensus       613 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~  661 (1113)
                      ...    ...++.|+|||++|+.++.++...+|.+.  ++ ...+.+..+.
T Consensus       370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~  415 (429)
T PRK01742        370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSD  415 (429)
T ss_pred             CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCC
Confidence            221    23578899999999999999998888763  34 4555555444

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.57  E-value=2.1e-11  Score=139.02  Aligned_cols=200  Identities=14%  Similarity=0.193  Sum_probs=150.4

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  440 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  440 (1113)
                      |....+.-+.+ .++.++.+..+.|||...+..+..       +..+..    .+    -....-+-++++.-++++|+.
T Consensus        90 i~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~-------i~~~er----~~----l~~~~~~g~s~~~~~i~~gsv  153 (967)
T KOG0974|consen   90 IFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSK-------IQSDER----CT----LYSSLIIGDSAEELYIASGSV  153 (967)
T ss_pred             ccccchhhhcc-eEEEEEcCceEEEEecccCceehh-------cCCCce----EE----EEeEEEEeccCcEEEEEeccc
Confidence            33355555666 488888999999999987655431       000000    00    012233456778889999999


Q ss_pred             CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-EeeccCcCEEEEeeee
Q 001258          441 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSVCPHH  519 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~~~~~  519 (1113)
                      -+.|.+|+..... . + ..+.+|.+.|.++.|+.||+  ++++.|+|.++++|++++++... +.-+|...|+.++|.+
T Consensus       154 ~~~iivW~~~~dn-~-p-~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~  228 (967)
T KOG0974|consen  154 FGEIIVWKPHEDN-K-P-IRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLP  228 (967)
T ss_pred             cccEEEEeccccC-C-c-ceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEecc
Confidence            9999999998322 1 1 14789999999999999999  89999999999999999988876 7788999999999875


Q ss_pred             cCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEE
Q 001258          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  599 (1113)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  599 (1113)
                      .    .+++++.|.+.++|+..-.. .                    ..+.+|..+.++.++.++....+++++.|+.++
T Consensus       229 n----~i~t~gedctcrvW~~~~~~-l--------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk  283 (967)
T KOG0974|consen  229 N----RIITVGEDCTCRVWGVNGTQ-L--------------------EVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLK  283 (967)
T ss_pred             c----eeEEeccceEEEEEecccce-e--------------------hhhhhhhhcceeEEEEcCCceEEEeeccCcchh
Confidence            4    79999999999999654211 1                    134555566677777777777899999999999


Q ss_pred             EEECCCC
Q 001258          600 FWDMDSV  606 (1113)
Q Consensus       600 iwd~~~~  606 (1113)
                      +|++...
T Consensus       284 ~~~l~~r  290 (967)
T KOG0974|consen  284 LWDLNGR  290 (967)
T ss_pred             hhhhhcc
Confidence            9998653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.57  E-value=2.4e-12  Score=141.43  Aligned_cols=329  Identities=15%  Similarity=0.130  Sum_probs=193.9

Q ss_pred             eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                      +++++-..++.|.|.|..+.+.+.++......-..+.  .++||+++++.+.||.|.++|+.+.+...++.. +....++
T Consensus         7 l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~--~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i   83 (369)
T PF02239_consen    7 LFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLK--FSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGI   83 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEE
T ss_pred             EEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEE--ecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceE
Confidence            4567777899999999999999999986544333344  456778999999999999999999886666654 3345667


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCC-----CCCcCeEEECCCCCEE
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLL  633 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l  633 (1113)
                      ++++||+                     +++++ ...+.+.++|..+.+.+..+...+.     ...+..+..+|....+
T Consensus        84 ~~s~DG~---------------------~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~f  142 (369)
T PF02239_consen   84 AVSPDGK---------------------YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEF  142 (369)
T ss_dssp             EE--TTT---------------------EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEE
T ss_pred             EEcCCCC---------------------EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEE
Confidence            7777666                     56554 4799999999999999988764321     2345677778887766


Q ss_pred             EEEECC-CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccC
Q 001258          634 AVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA  712 (1113)
Q Consensus       634 ~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1113)
                      +..-.| +.|.+.|..+........                                                       
T Consensus       143 Vv~lkd~~~I~vVdy~d~~~~~~~~-------------------------------------------------------  167 (369)
T PF02239_consen  143 VVNLKDTGEIWVVDYSDPKNLKVTT-------------------------------------------------------  167 (369)
T ss_dssp             EEEETTTTEEEEEETTTSSCEEEEE-------------------------------------------------------
T ss_pred             EEEEccCCeEEEEEeccccccceee-------------------------------------------------------
Confidence            655554 677766755441111000                                                       


Q ss_pred             CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCce
Q 001258          713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKA  791 (1113)
Q Consensus       713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~  791 (1113)
                                      .+                   .........|+|++++++++.. +..+-++|......      
T Consensus       168 ----------------i~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~------  206 (369)
T PF02239_consen  168 ----------------IK-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL------  206 (369)
T ss_dssp             ----------------EE---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE------
T ss_pred             ----------------ec-------------------ccccccccccCcccceeeecccccceeEEEeeccceE------
Confidence                            00                   1223456789999998766543 57888887654322      


Q ss_pred             eeeecCeecCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEE-eCCeEEEEECCCCceeeeecCCCCCeeEEEEec
Q 001258          792 TASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP  869 (1113)
Q Consensus       792 ~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~  869 (1113)
                             +.....|..... ......|...-.--+....+...++. +.+.+.+||..+++.++++...... ..+..+|
T Consensus       207 -------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP  278 (369)
T PF02239_consen  207 -------VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP  278 (369)
T ss_dssp             -------EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T
T ss_pred             -------EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC
Confidence                   011111110000 00000011110111222333343222 3456778999999999999876666 8888899


Q ss_pred             CCCcEEEEE----ecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccc
Q 001258          870 QDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQ  937 (1113)
Q Consensus       870 ~d~~~la~g----~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~~~~~~  937 (1113)
                       +++++.+.    ...+.|.++|..+.+.+..+.... ..+..+.|++||+.+..+..+  +.|.+||..+.+..
T Consensus       279 -~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~  352 (369)
T PF02239_consen  279 -DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEK  352 (369)
T ss_dssp             -T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred             -CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEE
Confidence             88888887    455899999999988877775333 358999999999977655543  36999999996543

...

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=2.6e-12  Score=128.53  Aligned_cols=262  Identities=12%  Similarity=0.133  Sum_probs=164.5

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....|++++|-|.+...++.+.-+.|.+|..+......-       .++......+++    +.+.+| ..|+++.|.+|
T Consensus       139 sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~~qv----l~~pgh-~pVtsmqwn~d  206 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHHLQV----LQDPGH-NPVTSMQWNED  206 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccchhh----eeCCCC-ceeeEEEEcCC
Confidence            345789999999877666666667789998764321000       000000001111    222234 78999999999


Q ss_pred             CCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          830 DSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      |..+++++  |..|.|||.+++.++.......+.++-+.||| |+.+|+.++-|+..++|............--++.|..
T Consensus       207 gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqt  285 (445)
T KOG2139|consen  207 GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQT  285 (445)
T ss_pred             CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceee
Confidence            99999998  68899999999887766555567799999999 8999999999999999955432222333334569999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--c--------------cccccCCCCCCCCCCCceEEEccCCcEEEEEc
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQK--N--------------RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  971 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~--~--------------~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~  971 (1113)
                      .+|+|+|++|..++.. .=++|.+.......  .              ....+..+...-.+.+.+++|.|.|.+||+..
T Consensus       286 acWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f  364 (445)
T KOG2139|consen  286 ACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF  364 (445)
T ss_pred             eeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence            9999999887655432 23444433211110  0              00111122222235789999999999999953


Q ss_pred             CC---------eEEEEeCCccceeeccccC-CCCCCeeEEEECC---CCCEEEEEeCCCcEEEEecC
Q 001258          972 ET---------QLAIFETTKLECVKQWVPR-ESSAPITHATFSC---DSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       972 d~---------~v~v~d~~~~~~~~~~~~~-~h~~~v~~l~~s~---dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      .+         .|.+||....-.+.....+ .......-++|.|   ++.+|..+-..|.+.-|++.
T Consensus       365 Kg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  365 KGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            22         3556766544433322111 0122355667765   56677777777777777664

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=2.1e-12  Score=127.45  Aligned_cols=242  Identities=14%  Similarity=0.178  Sum_probs=166.8

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEE-EEecC------CcEEEEEc
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNV  889 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la-~g~~d------g~v~iwd~  889 (1113)
                      ....+++|+.|...+++|.|...+||+.+-.+.....+.+..  .+..+-|-   .++|| +|+.+      ..|.|||=
T Consensus         6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence            345569999999999999999999999986444322222222  23333332   23444 34333      37999996


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ...+++.++. ...+|.++.+++|  .||..- .+.|+||.....-+.    +...+....+ ....+++-+.+..+||.
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~----l~~~et~~NP-kGlC~~~~~~~k~~Laf  153 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL----LHVIETRSNP-KGLCSLCPTSNKSLLAF  153 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh----eeeeecccCC-CceEeecCCCCceEEEc
Confidence            6677777776 6678999999866  455443 567999998753221    1111111111 12223333334445555


Q ss_pred             -E-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccC
Q 001258          970 -V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus       970 -~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
                       | .-|+|+|-|+...+.-......+|.+.|.|++++-+|.+|||++..|+ |||||..+|+.+..++-    . .-...
T Consensus       154 Pg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR----G-~d~A~  228 (346)
T KOG2111|consen  154 PGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR----G-VDRAD  228 (346)
T ss_pred             CCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec----C-Cchhe
Confidence             5 568999999986665323334589999999999999999999999998 99999999999988761    1 11234


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1047 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1047 v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |.  +++|+| |+.+|++.|+.|||+|+.+...+
T Consensus       229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            55  589999 78999999999999999998755

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.53  E-value=6.6e-14  Score=134.05  Aligned_cols=167  Identities=20%  Similarity=0.305  Sum_probs=133.1

Q ss_pred             chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc---------HHHHHHHhhccCHHHHHHHhccCc--cccCcccchhh
Q 001258            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKI   72 (1113)
Q Consensus         4 ~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~~~~~~--~~~~~~~~~~~   72 (1113)
                      -++|+.|||++||...||.++|+.+.+|+|+..+         ...+|.+|..|+-++|++.+.++.  .++.+.   .+
T Consensus        25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~---~l  101 (228)
T KOG2659|consen   25 MREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR---EL  101 (228)
T ss_pred             chhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch---hH
Confidence            4689999999999999999999999999999772         678999999999999999999983  333332   48


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccCCC--ChhHHHHHHHHHHhh
Q 001258           73 FFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKL  150 (1113)
Q Consensus        73 ~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~  150 (1113)
                      .|.+++|+++||+..+...+|+.|++.++.|+...+++.++.|...+....++.....+ ...  ....|+++++.+...
T Consensus       102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~a  180 (228)
T KOG2659|consen  102 FFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSA  180 (228)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988888888888877665555322221 111  346799999999887


Q ss_pred             ccCCCCcccccCCCCCc-hhHHHHHHHHHHHHHH
Q 001258          151 IEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQH  183 (1113)
Q Consensus       151 ~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q~  183 (1113)
                      |-...-         .+ ..+|..||+...+.|.
T Consensus       181 iL~~~~---------~~~~~~l~~llk~~~~~~~  205 (228)
T KOG2659|consen  181 ILASQE---------HESEPKLPFLLKLISWAQE  205 (228)
T ss_pred             HHHHhc---------ccccchHHHHHHHHHHHHH
Confidence            754321         11 4488888877666663

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=3.5e-12  Score=127.59  Aligned_cols=255  Identities=16%  Similarity=0.176  Sum_probs=163.4

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-CCeEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFG  436 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~la  436 (1113)
                      ...+..++|++.--. +|++..|-.|+|||-.....-.                   +-..-...|+|++|-|. ++-|+
T Consensus        98 ~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasela  157 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASELA  157 (445)
T ss_pred             hcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCcceee
Confidence            456688999996653 7888999999999976522111                   11223457999999994 55677


Q ss_pred             EEeCCCeEEEEEccCCceee-----------eeeeeecccCCeeEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCceeeE
Q 001258          437 VAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~  504 (1113)
                      +|+..| |.||.....-...           ++..-.+| .+|+++.|.+||.  .+++++ .|..|.|||..+|.++..
T Consensus       158 vgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL  233 (445)
T KOG2139|consen  158 VGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPL  233 (445)
T ss_pred             eeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccc
Confidence            777666 9999875321110           11123355 5899999999999  677777 467899999999988766


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc-CceeEEEec
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK-RSLGVVQFD  583 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~-~~i~~~~~~  583 (1113)
                      .....+.+.-+.|+|+  +.+|+.++-|+..++|+....-.........+.|...+|+|+|+.++..... ..+..+.|+
T Consensus       234 ~~~glgg~slLkwSPd--gd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f~  311 (445)
T KOG2139|consen  234 IPKGLGGFSLLKWSPD--GDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTFD  311 (445)
T ss_pred             cccCCCceeeEEEcCC--CCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEeec
Confidence            5445677888898765  4799999999999999655433333334444589999999999865443332 233334443


Q ss_pred             CCCCEEE-EEecCCcEEEEECCCCceEEEEccC-CCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          584 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       584 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                      .....+. .++.....-+-|+..-.   ..... --.+++.+++|.|.|.+|++....+.
T Consensus       312 ~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~~  368 (445)
T KOG2139|consen  312 GEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS  368 (445)
T ss_pred             CCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence            3322221 22222222233332111   00000 01235789999999999999866543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.51  E-value=2e-11  Score=132.16  Aligned_cols=547  Identities=11%  Similarity=0.108  Sum_probs=308.1

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      .+....|++|+....| +|+|+.||.++|-.+.+...-..    .-.+++.+.-.....+.||.+.|..+.|+.+.+.|-
T Consensus        13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence            4556789999999986 99999999999999876432211    001112222223346899999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee--EeeccCcCEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYS  514 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~h~~~v~~  514 (1113)
                      +...+|.|.||-+-.|...... .-...++.|.+++|..||.  .+.....||.|.|=.++. ..+.  .+++.  ....
T Consensus        88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdG-NRIwgKeLkg~--~l~h  161 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDG-NRIWGKELKGQ--LLAH  161 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeecc-ceecchhcchh--eccc
Confidence            9999999999999887654321 1223566799999999999  577778888887766543 2221  23321  1223


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-eEE-EEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      +.|++  |...++.+-..|.+.++|....-.. .+  +... |+. -.++.-+.+ +.++....-...-..|+...|+++
T Consensus       162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~-Kl--~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavc  235 (1189)
T KOG2041|consen  162 VLWSE--DLEQALFKKANGETHLYDNQGNFER-KL--EKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVC  235 (1189)
T ss_pred             eeecc--cHHHHHhhhcCCcEEEecccccHHH-hh--hhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEE
Confidence            45554  3356777777899999987532111 11  1111 111 112222221 111111111122334677889999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      ...|.+.+-.-.+...-..+...   -.+....|+++|..|++++.+..--- +..+  ..+..                
T Consensus       236 y~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~--n~v~F----------------  293 (1189)
T KOG2041|consen  236 YANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDS--NKVHF----------------  293 (1189)
T ss_pred             EcCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-cccc--ceEEE----------------
Confidence            99999988765443332233221   25778999999999999987632100 0000  00000                


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                        +++.+                                                          .....+..    ...
T Consensus       294 --ysp~G----------------------------------------------------------~i~gtlkv----pg~  309 (1189)
T KOG2041|consen  294 --YSPYG----------------------------------------------------------HIVGTLKV----PGS  309 (1189)
T ss_pred             --eccch----------------------------------------------------------hheEEEec----CCc
Confidence              01111                                                          00011111    224


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEcccc----------ccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  822 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~----------~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~  822 (1113)
                      .|++++|-..|-.++.+ -|+.|++=++...          .+--.+.......+.+||..+.+..-..      -....
T Consensus       310 ~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~  382 (1189)
T KOG2041|consen  310 CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFE  382 (1189)
T ss_pred             eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hccee
Confidence            55666665555443332 2334444332211          0000111222234567887766533322      22345


Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEEC-CCCceeeeecC-------CCCCeeEE--EEecCCCcEEEEEecCCcEEEEEccc
Q 001258          823 CFALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFMP-------PPPAATFL--AFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s-dg~i~vwd~-~~~~~~~~~~~-------~~~~i~~l--~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ++++..+--.|+.-. +|.|.-++. ++...+..+.-       -....+.+  .|-.-++..++.++.+ .+.+|....
T Consensus       383 ~~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~  461 (1189)
T KOG2041|consen  383 NMAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVL  461 (1189)
T ss_pred             ehheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEec
Confidence            566665544444444 455554421 22211111100       01111111  1222256677777766 678887532


Q ss_pred             ce--------------------------------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258          892 DE--------------------------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  939 (1113)
Q Consensus       892 ~~--------------------------------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~  939 (1113)
                      .+                                -..++.|..++|.+++.+  .++|..+-..|.|.-+.+........
T Consensus       462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~  539 (1189)
T KOG2041|consen  462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS  539 (1189)
T ss_pred             cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence            11                                013455677889888886  57888899999999999987432211


Q ss_pred             cccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC---ccceeeccccCCCCCCeeEEEECCCCCEEEEEeC
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                               .+....+..++++-+...+++ -.-|.+.+.|+.   +|+.+..+.. .....|..+.|..|+..|++-..
T Consensus       540 ---------y~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~-~errDVWd~~Wa~dNp~llAlme  609 (1189)
T KOG2041|consen  540 ---------YPVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYT-SERRDVWDYEWAQDNPNLLALME  609 (1189)
T ss_pred             ---------cccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeeh-hhhhhhhhhhhccCCchHHhhhh
Confidence                     111236788998888888887 466777777775   3444443321 22567899999998887777666


Q ss_pred             CCcEEEEecCC
Q 001258         1016 DATVCVFSAAN 1026 (1113)
Q Consensus      1016 Dg~v~vwd~~~ 1026 (1113)
                      ...++|++-..
T Consensus       610 Ktrmyifrgnd  620 (1189)
T KOG2041|consen  610 KTRMYIFRGND  620 (1189)
T ss_pred             hceEEEecCcC
Confidence            66677776543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.9e-12  Score=135.70  Aligned_cols=195  Identities=11%  Similarity=0.196  Sum_probs=155.5

Q ss_pred             cEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258          822 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  900 (1113)
Q Consensus       822 ~~l~~s-~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  900 (1113)
                      ..++++ |+..++++|+...|+-++++.|..+..+....+.++++..++ -..+|++|+.+|.|..||..+...+..+..
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence            344554 455677777788899999999999999988888999999999 788999999999999999988766655532


Q ss_pred             ------ccc-----CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEE
Q 001258          901 ------HSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHF  967 (1113)
Q Consensus       901 ------h~~-----~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l  967 (1113)
                            |.+     .|+++.|+.||-.+++|..+|.|.|||+.+.+...   .... +.   ..+|..+.|.+.  +..+
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~---~kdh-~~---e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL---VKDH-GY---ELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee---eccc-CC---ccceeeecccccCCCceE
Confidence                  333     49999999999999999999999999999854321   1111 11   146888888765  4556


Q ss_pred             EEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          968 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       968 ~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      ++.....++|||-.+|+......+   ...+..+|+-|++.+++++..++.+..|=++..
T Consensus       289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            667778899999999999887764   567999999999999999999988887776654

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=3.3e-13  Score=141.63  Aligned_cols=157  Identities=19%  Similarity=0.273  Sum_probs=117.8

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe---------eeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      .+..|+|+.|-|-++.+++.+-.+|.+++||.+.......         ..|.+-.........+.....--.+.|...+
T Consensus       218 ~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~  297 (636)
T KOG2394|consen  218 NKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFA  297 (636)
T ss_pred             cccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccccee
Confidence            3489999999998887777788899999998632111100         0011100000000011111222345899999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258          428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  507 (1113)
                      |||||++||+.+.||.++|+|..+.+.+.   .++.--+...||+|||||+  +|++|++|--|.||.+..++.+..-++
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGqG  372 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQG  372 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEeccc
Confidence            99999999999999999999999977655   4455667899999999999  899999999999999999999999999


Q ss_pred             cCcCEEEEeee
Q 001258          508 HEAPVYSVCPH  518 (1113)
Q Consensus       508 h~~~v~~~~~~  518 (1113)
                      |..+|..++|.
T Consensus       373 HkSWVs~VaFD  383 (636)
T KOG2394|consen  373 HKSWVSVVAFD  383 (636)
T ss_pred             cccceeeEeec
Confidence            99999999987

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.49  E-value=2.1e-09  Score=111.66  Aligned_cols=145  Identities=11%  Similarity=0.057  Sum_probs=105.9

Q ss_pred             ccCceEEEEEeCCCceEEEeecCC-eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          750 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      +...|.-..+..+++.++.+..|| .+-|++..                      ++.+....    +.-+.|.++..++
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~----------------------~~e~kr~e----~~lg~I~av~vs~  411 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD----------------------GGEVKRIE----KDLGNIEAVKVSP  411 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecC----------------------CceEEEee----CCccceEEEEEcC
Confidence            344455556666666778888887 77777654                      33322211    1456789999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----cEEEEEcccceeeeeeccccc
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      +|++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+|    .|++||+..++....-. ..+
T Consensus       412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence            999999998 47899999999987666666677899999999 999999988776    68999999887654332 222


Q ss_pred             CeEEEEEcCCCCEEEEEeC
Q 001258          904 RITGLAFSHALNVLVSSGA  922 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~  922 (1113)
                      .=.+-+|.||+++|.--+.
T Consensus       490 ~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cccCcccCCCCcEEEEEec
Confidence            2345688899998876543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.48  E-value=8e-11  Score=125.34  Aligned_cols=254  Identities=15%  Similarity=0.228  Sum_probs=166.4

Q ss_pred             cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCC--c
Q 001258          796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN--N  873 (1113)
Q Consensus       796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~--~  873 (1113)
                      .+++|+.+++.........  .... ++..|+.|..+.+--..+.+.+|++.+.+.+.. .-|...|+.+.+|| ++  .
T Consensus       106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~  180 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP  180 (566)
T ss_pred             ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence            3456666664432221111  2222 588899998877666688999999987443322 23577899999999 53  3


Q ss_pred             EEEE-----EecCCcEEEEEcccceeeeeec---ccccCeEEEEEcCCCCE-EE--EEeCCC---------cEEEEeCCC
Q 001258          874 IIAI-----GMDDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNV-LV--SSGADS---------QLCVWSSDG  933 (1113)
Q Consensus       874 ~la~-----g~~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~-L~--s~s~D~---------~v~iwd~~~  933 (1113)
                      .+|+     ++.-+.|+||.+........+.   -....=..+.|.+-|.- |+  +..-|.         ++++.++++
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence            4444     3455689999887322211111   01122234677766643 33  333343         678888773


Q ss_pred             CccccccccccCCCCCCCCCCCceEEEccCCcEEEEE---cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEE
Q 001258          934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~---~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1113)
                      ..+    ......     .++|.++.|+|+|+.++++   .-..+.|||++ +..+..+.    .++=.++-|+|.|++|
T Consensus       261 ~s~----~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  261 ESV----SVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII  326 (566)
T ss_pred             ceE----EEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence            221    122221     1589999999999988874   45689999987 55555554    6778899999999998


Q ss_pred             EEEeCC---CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC------CCcEEEEeccCCC
Q 001258         1011 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1080 (1113)
Q Consensus      1011 ~s~~~D---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1080 (1113)
                      +.+|-+   |.|-|||+.+.+++..+..           -....+.|+| ||.+++|+..      |+.++||++....
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~a-----------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFKA-----------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhcccccc-----------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence            887754   8899999999999877651           1223589999 7899887766      7899999976443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.47  E-value=5.8e-12  Score=133.42  Aligned_cols=259  Identities=14%  Similarity=0.132  Sum_probs=175.6

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      +++-+.+...-+.+..||||+|++|+|..--.|++||+..-.....+-                   -....|.-.-+|-
T Consensus        44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh-------------------lDae~V~feiLsD  104 (703)
T KOG2321|consen   44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH-------------------LDAEVVDFEILSD  104 (703)
T ss_pred             HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec-------------------ccccceeEEEecc
Confidence            345566888889999999999999999999999999997644322110                   1123455556666


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      |-..++.-..|.+|.+..--. ...    .++ -...-.+++++.-.-.  |..++....|+-.+++.|+.+..|....+
T Consensus       105 D~SK~v~L~~DR~IefHak~G-~hy----~~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~  176 (703)
T KOG2321|consen  105 DYSKSVFLQNDRTIEFHAKYG-RHY----RTR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSG  176 (703)
T ss_pred             chhhheEeecCceeeehhhcC-eee----eee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccc
Confidence            666667667788776544322 111    111 0112244555544443  44444456788899999999999988889


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .++++.+++..  .+|++|+.+|.|-+||.+.......+..... |.+....         .....++.+.|+.+|-.++
T Consensus       177 ~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~pg~---------~~~~svTal~F~d~gL~~a  244 (703)
T KOG2321|consen  177 ELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSHPGG---------DAAPSVTALKFRDDGLHVA  244 (703)
T ss_pred             cceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccc-cCCCccc---------cccCcceEEEecCCceeEE
Confidence            99999876544  5889999999999999998766655543322 1111110         1112456667777777899


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC--CCEEEEEECCCcEEEEEcCCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +|..+|.|.|||+++.+++..-. |....+|..+.|.+.  +..+++. +...++|||-.+|
T Consensus       245 VGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  245 VGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             eeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence            99999999999999988876544 444567889999875  3445544 4478999998887

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=4.5e-13  Score=138.22  Aligned_cols=280  Identities=11%  Similarity=0.163  Sum_probs=207.3

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .-..+.++.+|+.++.++.-|.+..+|+.+.                      .+... +   .-...|..+.|-.+.++
T Consensus       131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~----------------------~L~~E-i---~v~Etv~Dv~~LHneq~  184 (545)
T KOG1272|consen  131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTK----------------------KLHFE-I---NVMETVRDVTFLHNEQF  184 (545)
T ss_pred             CCeeeeecCCccEEEecCCccceeeeecccc----------------------eeeee-e---ehhhhhhhhhhhcchHH
Confidence            4467889999999999999999998887632                      22211 1   13567889999999999


Q ss_pred             EEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcC
Q 001258          833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  912 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  912 (1113)
                      +|++...-+.|||-. |..++.+..+ ..+..+.|-| ---+|++++..|.++--|+.+|+.+..+..-.+.+..++-.|
T Consensus       185 ~AVAQK~y~yvYD~~-GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP  261 (545)
T KOG1272|consen  185 FAVAQKKYVYVYDNN-GTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP  261 (545)
T ss_pred             HHhhhhceEEEecCC-CcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence            999999999999964 5666777644 4589999999 788999999999999999999999999998899999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecccc
Q 001258          913 ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP  991 (1113)
Q Consensus       913 d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~  991 (1113)
                      -+-.+-+|...|+|.+|.....+.     +.....|.   ++|.++++.++|.|+++ |.|..++|||+++...+.++..
T Consensus       262 ~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  262 YNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             ccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeec
Confidence            999999999999999999887443     22222333   48999999999999999 7999999999999887766653


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec-CCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCc
Q 001258          992 RESSAPITHATFSCDSQLVYACFLDATVCVFSA-ANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGG 1070 (1113)
Q Consensus       992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~-~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~ 1070 (1113)
                         ..+...++||..|  +++.+....|.||.- -.+......   .|+...-.+.|..  +.|.|- .+.|-.|..-|-
T Consensus       334 ---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~---pYm~H~~~~~V~~--l~FcP~-EDvLGIGH~~G~  402 (545)
T KOG1272|consen  334 ---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGET---PYMNHRCGGPVED--LRFCPY-EDVLGIGHAGGI  402 (545)
T ss_pred             ---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCc---chhhhccCccccc--ceeccH-HHeeeccccCCc
Confidence               3567778888665  444455667999943 222111111   1221122345554  777773 456666666664


Q ss_pred             EEEEeccCCC
Q 001258         1071 VHVFEPLESE 1080 (1113)
Q Consensus      1071 v~vW~~~~~~ 1080 (1113)
                      -.+-=.-.||
T Consensus       403 tsilVPGsGe  412 (545)
T KOG1272|consen  403 TSILVPGSGE  412 (545)
T ss_pred             eeEeccCCCC
Confidence            4444444444

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.4e-11  Score=140.29  Aligned_cols=214  Identities=11%  Similarity=0.112  Sum_probs=143.9

Q ss_pred             CCCCccEEEEecCCCEEEEEe----CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-ecCC--cEEEEEc
Q 001258          817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDS--SIQIYNV  889 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg--~v~iwd~  889 (1113)
                      +...+.+.+|||||+.|+..+    +..|.+|++.+++... +.........++|+| ||+.|+.. +.+|  .|++||+
T Consensus       197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~  274 (429)
T PRK03629        197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSP-DGSKLAFALSKTGSLNLYVMDL  274 (429)
T ss_pred             CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECC-CCCEEEEEEcCCCCcEEEEEEC
Confidence            456788999999999998764    2469999998875432 222333455789999 78777654 4455  5899999


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-SQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                      .+++... +..+...+....|+|||+.|+.++.+ +.  |.++|+.+++...   +. ..+     .......|+|||++
T Consensus       275 ~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt-~~~-----~~~~~~~~SpDG~~  344 (429)
T PRK03629        275 ASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR---IT-WEG-----SQNQDADVSSDGKF  344 (429)
T ss_pred             CCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE---ee-cCC-----CCccCEEECCCCCE
Confidence            8876544 44445567899999999999877754 44  4444666543211   11 111     13467899999999


Q ss_pred             EEEE-cC---CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc---EEEEecCCCceeeecCCCccc
Q 001258          967 FLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT---VCVFSAANLKLRCRINPSAYL 1039 (1113)
Q Consensus       967 l~~~-~d---~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~---v~vwd~~~~~~~~~~~~~~~~ 1039 (1113)
                      ++.. .+   ..|.+||+.+++.... .. .  .......|+|||++|+.++.++.   +.+++++ |....++.     
T Consensus       345 Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~-~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~-----  414 (429)
T PRK03629        345 MVMVSSNGGQQHIAKQDLATGGVQVL-TD-T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP-----  414 (429)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEe-CC-C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc-----
Confidence            9873 22   3588999988875432 21 1  23356889999999999888765   6777774 44445554     


Q ss_pred             CCCcccCccceEEEEeC
Q 001258         1040 PAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus      1040 ~~gh~~~v~~i~~~~~p 1056 (1113)
                        +|.+.+..  .+|+|
T Consensus       415 --~~~~~~~~--p~Wsp  427 (429)
T PRK03629        415 --ATDGQVKF--PAWSP  427 (429)
T ss_pred             --cCCCCcCC--cccCC
Confidence              55555553  66665

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.44  E-value=1.3e-12  Score=134.80  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=195.7

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeee------------------------eeeccCCCCcccccc
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQAA  414 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~  414 (1113)
                      .....+.|+.+|++ |+.|+.-|.|..+|+.+++......+                        -+||-...+..+   
T Consensus       130 FGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHC---  205 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHC---  205 (545)
T ss_pred             cCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEee---
Confidence            34578999999997 66778899999999999988765332                        233322222211   


Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                       +..| ..|..+.|-|.--+|++++..|.++.-|+.+|+.+.   .+..-.+.+..++-+|-+.  ++-+|...|+|.+|
T Consensus       206 -lk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSlW  278 (545)
T KOG1272|consen  206 -LKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSLW  278 (545)
T ss_pred             -hhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCccc--eEEEcCCCceEEec
Confidence             2333 478889999999999999999999999999999877   4556678899999999988  78899999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      .....+++..+..|.++|.++++.  ++|.|++|.+.|..++|||++....+.++.. ......+++|..|         
T Consensus       279 SP~skePLvKiLcH~g~V~siAv~--~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg---------  346 (545)
T KOG1272|consen  279 SPNSKEPLVKILCHRGPVSSIAVD--RGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG---------  346 (545)
T ss_pred             CCCCcchHHHHHhcCCCcceEEEC--CCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc---------
Confidence            999999998888999999999965  5668999999999999999998776666554 4455666666655         


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECC-C--CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-S--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                                    +++.+....|.||.-. .  +.....+-.|.....|..+.|.|-...|-+|...|.-.+.-...|.
T Consensus       347 --------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsGe  412 (545)
T KOG1272|consen  347 --------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSGE  412 (545)
T ss_pred             --------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCCC
Confidence                          5666777789999532 2  1222223333334578999999988888888887766666555553

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.44  E-value=2.7e-08  Score=121.61  Aligned_cols=532  Identities=12%  Similarity=0.132  Sum_probs=284.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEE----ecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ..+.|.++.|-++... ++.+..+|.|.+.    +..+.+.-.                    ...-...|.+++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence            4578999999999985 7888899999999    555443322                    22335589999999999


Q ss_pred             CeEEEEeCCCeEEEEEcc----C---------Cc--ee--------eee----------------------eeeecccCC
Q 001258          433 SLFGVAYSRHIVQIYSYH----G---------GD--EV--------RQH----------------------LEIDAHVGG  467 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~----~---------~~--~~--------~~~----------------------~~l~~h~~~  467 (1113)
                      ..||....+++|.+.+-.    .         |+  .+        .++                      ..+. +.+.
T Consensus       133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~  211 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG  211 (928)
T ss_pred             CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence            999999999988875421    0         00  00        000                      0111 3345


Q ss_pred             eeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEE
Q 001258          468 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW  538 (1113)
Q Consensus       468 V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iw  538 (1113)
                      -..|+|-.||.  +||..+.      -+.+|||+ +.|....+-..-.+--.+++|.|+  |++|++...   ...|.+|
T Consensus       212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~WrPs--G~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSWRPS--GNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccCCCC--CCEEEEEEEcCCCcEEEEE
Confidence            67899999999  6666553      25799999 567755544433333445677654  468887764   3346666


Q ss_pred             EcCCCCCeeeee----CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE--EEE
Q 001258          539 LYDNLGSRVDYE----APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSI  612 (1113)
Q Consensus       539 d~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~  612 (1113)
                      .-. +-....+.    .....|..+.|++|                     +..|+....| .|.+|-..+....  +.+
T Consensus       287 ErN-GLrhgeF~l~~~~~~~~v~~l~Wn~d---------------------s~iLAv~~~~-~vqLWt~~NYHWYLKqei  343 (928)
T PF04762_consen  287 ERN-GLRHGEFTLRFDPEEEKVIELAWNSD---------------------SEILAVWLED-RVQLWTRSNYHWYLKQEI  343 (928)
T ss_pred             ecC-CcEeeeEecCCCCCCceeeEEEECCC---------------------CCEEEEEecC-CceEEEeeCCEEEEEEEE
Confidence            422 11111221    12334445555554                     4456665544 4999998876533  233


Q ss_pred             ccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccc
Q 001258          613 DADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  691 (1113)
Q Consensus       613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (1113)
                      ..... ..+..+.|+| +...|...+.+|.+..++..-.     ...+...                             
T Consensus       344 ~~~~~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~-----------------------------  388 (928)
T PF04762_consen  344 RFSSS-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS-----------------------------  388 (928)
T ss_pred             EccCC-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC-----------------------------
Confidence            32222 2345699999 4556777777787766654211     0000000                             


Q ss_pred             ccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc--eecccCcccccCceEEEEEeCCCceEEEe
Q 001258          692 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC--RSLRLPENLRATKISRLIFTNSGNAILAL  769 (1113)
Q Consensus       692 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~s~~~~~l~~~  769 (1113)
                                         .++....+..-....+.+-.+.....+...  ..+.     -...|.+++|++++..+++.
T Consensus       389 -------------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl  444 (928)
T PF04762_consen  389 -------------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVL  444 (928)
T ss_pred             -------------------CccCceEEEEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEE
Confidence                               000111111111134444444433332222  2222     34689999999999989999


Q ss_pred             ecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-C---CeEEEEE
Q 001258          770 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFN  845 (1113)
Q Consensus       770 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd  845 (1113)
                      ..||.+.+|.+..............     ..........  .........+..++|..+...++... +   ..+.+++
T Consensus       445 ~~d~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  517 (928)
T PF04762_consen  445 TSDGSLSIYEWDLKNMWSVKPPKLL-----SSISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVD  517 (928)
T ss_pred             ECCCCEEEEEecCCCcccccCcchh-----hhcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEE
Confidence            9999999998764322110000000     0000000000  00001345677888888887777665 3   4688888


Q ss_pred             CCCCc---eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee-eeeecccccCeEEEEEcCCCC---EEE
Q 001258          846 MMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLV  918 (1113)
Q Consensus       846 ~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~L~  918 (1113)
                      +....   ...........+..+...+ +...++.-..+|.+..++...... +..|..-... ..+....+..   .++
T Consensus       518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~  595 (928)
T PF04762_consen  518 IDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLF  595 (928)
T ss_pred             eccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEE
Confidence            74332   2233333344455555555 444567777899998776554322 1233222222 2222223332   455


Q ss_pred             EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE-EEcCCeEEEEeCCc-cceeeccccCC---
Q 001258          919 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL-VVHETQLAIFETTK-LECVKQWVPRE---  993 (1113)
Q Consensus       919 s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~-~~~d~~v~v~d~~~-~~~~~~~~~~~---  993 (1113)
                      .-+..|.+++   +. ..     +.         ..++++.++  +.+|+ +.....+++.++.. ........ +.   
T Consensus       596 GLs~~~~Ly~---n~-~~-----la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~  654 (928)
T PF04762_consen  596 GLSSNGRLYA---NS-RL-----LA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPEN  654 (928)
T ss_pred             EECCCCEEEE---CC-EE-----Ee---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccc
Confidence            4455554443   11 10     10         235555553  44444 46777788888871 11111110 00   


Q ss_pred             -CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258          994 -SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus       994 -h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
                       +...+..+   ..|..|+++-....=-|..++-|.+-
T Consensus       655 ~~de~~R~V---ERGsriVt~vp~~~~vVLQmPRGNLE  689 (928)
T PF04762_consen  655 SYDERCRRV---ERGSRIVTAVPSDTSVVLQMPRGNLE  689 (928)
T ss_pred             ccccccccC---ccCCEEEEEeCCCceEEEEcCCCchh
Confidence             01122222   25777777665555555566655443

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.43  E-value=1.5e-11  Score=122.37  Aligned_cols=325  Identities=14%  Similarity=0.244  Sum_probs=203.7

Q ss_pred             CCCEEEEEecCCcEEEEEC-CCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccc
Q 001258          585 TKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYD  663 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  663 (1113)
                      ..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++.+.|++|-..|++.-+.+..........+     
T Consensus        35 ~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r-----  108 (404)
T KOG1409|consen   35 KEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK-----  108 (404)
T ss_pred             CCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh-----
Confidence            3345999999999999964 3455444443 23345788999999999999999999998876654322211110     


Q ss_pred             ccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceec
Q 001258          664 ASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL  743 (1113)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~  743 (1113)
                                                                                      .|              
T Consensus       109 ----------------------------------------------------------------~~--------------  110 (404)
T KOG1409|consen  109 ----------------------------------------------------------------DY--------------  110 (404)
T ss_pred             ----------------------------------------------------------------hh--------------
Confidence                                                                            00              


Q ss_pred             ccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       744 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                          ..|...+..+.|+-....+++.+.|..+. |.-.                     +.|..+....    .....++
T Consensus       111 ----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t~  160 (404)
T KOG1409|consen  111 ----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPASA  160 (404)
T ss_pred             ----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCCC
Confidence                12778888899988888899888886554 2211                     1111111000    0111111


Q ss_pred             EEEecCCCEEEEEe-CCeEEEEE--CCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce-eeeeec
Q 001258          824 FALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLK  899 (1113)
Q Consensus       824 l~~s~~~~~l~~~s-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~-~~~~l~  899 (1113)
                      +.+.-.  +...|. .|.|.+-.  ......+.++.+|...+++++|.+ ...+|.+|..|..|.+||+.-.+ ....+.
T Consensus       161 ~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~  237 (404)
T KOG1409|consen  161 LQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQ  237 (404)
T ss_pred             CceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeec
Confidence            112111  334444 45544443  345677888999999999999999 88899999999999999997644 346788


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc-------------------------ccCCCCCCCCC-
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTPTAQ-  953 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~-------------------------~~~~~~~~~~~-  953 (1113)
                      +|.+.|..++..+--+.|++++.||.|.+|+++.........+                         .....|-...+ 
T Consensus       238 gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~  317 (404)
T KOG1409|consen  238 GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGK  317 (404)
T ss_pred             cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence            9999999999988889999999999999999876543221100                         00000000001 


Q ss_pred             CCceEEEccCCcEEEEEcCCeEEEEeCCccc-----eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          954 SDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       954 ~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      .+...+-+....+...+..-.+|+.|.--..     ....-.++.-...|+.+.+..+-.+|+|++.|+.|+|||+..
T Consensus       318 avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  318 AVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            1111111222222223445556665532111     100111112245799999999989999999999999999864

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.40  E-value=8.3e-10  Score=109.39  Aligned_cols=237  Identities=15%  Similarity=0.213  Sum_probs=159.8

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE-Ee
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AY  439 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~  439 (1113)
                      ...++|+.|..- +++|. |.-.+||+.+--+....+.+                 ..-.-.+..|-|  -.++||- ||
T Consensus         8 ~lsvs~NQD~Sc-Fava~-~~Gfriyn~~P~ke~~~r~~-----------------~~~G~~~veMLf--R~N~laLVGG   66 (346)
T KOG2111|consen    8 TLSVSFNQDHSC-FAVAT-DTGFRIYNCDPFKESASRQF-----------------IDGGFKIVEMLF--RSNYLALVGG   66 (346)
T ss_pred             eeEEEEccCCce-EEEEe-cCceEEEecCchhhhhhhcc-----------------ccCchhhhhHhh--hhceEEEecC
Confidence            345999999883 66665 55688999875332221110                 000012222222  2344443 33


Q ss_pred             CC------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEeecc--Cc
Q 001258          440 SR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGH--EA  510 (1113)
Q Consensus       440 ~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~~h--~~  510 (1113)
                      .+      ..|.|||=....++.   ++. -..+|.+|.+.++-    ++..- .+.|.||... +.+.++.+...  ..
T Consensus        67 g~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NPk  137 (346)
T KOG2111|consen   67 GSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK  137 (346)
T ss_pred             CCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCCC
Confidence            32      469999955544443   333 45789999998763    34333 6789999988 56667766533  23


Q ss_pred             CEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          511 PVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      ...+++  +..+..+|+.-| .-|.|.+-|+.....  ...+..|...|.+++++.+|.                     
T Consensus       138 GlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt---------------------  194 (346)
T KOG2111|consen  138 GLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGT---------------------  194 (346)
T ss_pred             ceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCcc---------------------
Confidence            455554  555545555544 468999999876554  356667777676666666665                     


Q ss_pred             EEEEEecCCc-EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          588 RFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       588 ~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .+++++..|+ |||||..+|+.+..+........|.+++|||++.+|+++++.|++.|+.+...
T Consensus       195 ~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  195 LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            7999998887 79999999999999976655678999999999999999999999999988764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=3.5e-10  Score=120.56  Aligned_cols=153  Identities=10%  Similarity=0.119  Sum_probs=102.6

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      ..++..++|++|+ ++|. +.+..|.|++..+++.+...                     ....++++.|||-|.+|.+-
T Consensus        35 ~~~~v~~~S~~G~-lfA~-~~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~   91 (566)
T KOG2315|consen   35 RPCNVFAYSNNGR-LFAY-SDNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW   91 (566)
T ss_pred             CcceeEEEcCCCc-EEEE-EcCCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence            3478889999999 4665 45789999999988644321                     11168999999999999873


Q ss_pred             -----eCC-----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          439 -----YSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       439 -----~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                           ..+     -.+.+|+++++. .+.  .+..-...-++..|+.|..   ++.--..+.+.+|++.+-+.+. -.-|
T Consensus        92 e~~~i~~~~~~~~pn~~v~~vet~~-~~s--~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~-~kl~  164 (566)
T KOG2315|consen   92 EPWAIYGPKNASNPNVLVYNVETGV-QRS--QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQ-HKLS  164 (566)
T ss_pred             cccccccCCCCCCCceeeeeeccce-ehh--heehhhhcCcccccccchh---hhhhhhcceEEEEecCCcccee-eeee
Confidence                 222     347799999943 222  2222222227999999987   4444456789999987633322 2236


Q ss_pred             CcCEEEEeeeecCCceEEEE-----EecCCcEEEEEcC
Q 001258          509 EAPVYSVCPHHKENIQFIFS-----TALDGKIKAWLYD  541 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~  541 (1113)
                      ...|..+.+++.+.-..+++     .|.-+.|++|.+.
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~  202 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYP  202 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccc
Confidence            77888888888754445543     3556679999776

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.40  E-value=4.9e-10  Score=124.01  Aligned_cols=279  Identities=15%  Similarity=0.178  Sum_probs=173.4

Q ss_pred             CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec----CCeEEEEEccccccCCCCceeeeecCee
Q 001258          724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS----NAIHLLWKWQRTERNSSGKATASVAPQL  799 (1113)
Q Consensus       724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----dg~i~vw~~~~~~~~~~~~~~~~~~~~l  799 (1113)
                      +.|..|+++....  .+..+..  .........++++|+++.|.+...    ++.|..|++...                
T Consensus        13 ~gI~~~~~d~~~g--~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~----------------   72 (345)
T PF10282_consen   13 GGIYVFRFDEETG--TLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD----------------   72 (345)
T ss_dssp             TEEEEEEEETTTT--EEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT----------------
T ss_pred             CcEEEEEEcCCCC--CceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC----------------
Confidence            6888888843222  1211111  113345567889999999998877    468888876532                


Q ss_pred             cCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cceeee---e----------cCCCCCe
Q 001258          800 WQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAA  862 (1113)
Q Consensus       800 w~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i  862 (1113)
                          +|.+... ....  .......++++|++++|+++.  +|.|.++++.. +.....   +          +......
T Consensus        73 ----~g~L~~~~~~~~--~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~  146 (345)
T PF10282_consen   73 ----TGTLTLLNSVPS--GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHP  146 (345)
T ss_dssp             ----TTEEEEEEEEEE--SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCE
T ss_pred             ----cceeEEeeeecc--CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccc
Confidence                1111000 0000  234567899999999999997  79999999986 333221   1          1123457


Q ss_pred             eEEEEecCCCcEEEEEe-cCCcEEEEEcccce--ee--eeec-ccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCC--C
Q 001258          863 TFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE--VK--SKLK-GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD--G  933 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~--~  933 (1113)
                      .++.|+| +++++++.. ....|++|++....  +.  ..+. ........++|+||++++.... .+++|.++++.  .
T Consensus       147 H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~  225 (345)
T PF10282_consen  147 HQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSD  225 (345)
T ss_dssp             EEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccC
Confidence            8999999 888777654 34589999997644  22  2222 2335578999999999887665 57889999998  3


Q ss_pred             CccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--ccce--eeccccCCCCCCeeEEEECCCC
Q 001258          934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~--~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
                      +.......................++++|||++|+++  ..+.|.+|+++  +++.  +..+..  .......++++|||
T Consensus       226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDG  303 (345)
T ss_dssp             TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTS
T ss_pred             CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCC
Confidence            3222222222221111111246789999999999996  56789999983  3333  333332  24458999999999


Q ss_pred             CEEEEEe-CCCcEEEEec--CCCceee
Q 001258         1008 QLVYACF-LDATVCVFSA--ANLKLRC 1031 (1113)
Q Consensus      1008 ~~l~s~~-~Dg~v~vwd~--~~~~~~~ 1031 (1113)
                      ++|++++ .++.|.+|++  ++|.+..
T Consensus       304 ~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             CEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            9999887 4578999977  4666543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.40  E-value=2.4e-07  Score=113.56  Aligned_cols=473  Identities=12%  Similarity=0.134  Sum_probs=254.3

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCCeEEEE----EccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      ...+.|.++.+-++...|+.+..+|.|.+.    +..+.. +.   ....-..+|.+++||||+.  +++....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            345689999999999999999999999999    544433 22   2223456899999999999  5555555677655


Q ss_pred             EeCCCCcee------------------------eEeeccCcC------------------E----EEEeeeecCCceEEE
Q 001258          494 WDATNGAKQ------------------------YIFEGHEAP------------------V----YSVCPHHKENIQFIF  527 (1113)
Q Consensus       494 wd~~~~~~~------------------------~~~~~h~~~------------------v----~~~~~~~~~~~~~l~  527 (1113)
                      -+ .+...+                        ..|+|-.+.                  +    ..+.++..+||.+++
T Consensus       147 mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFA  225 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFA  225 (928)
T ss_pred             Ee-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEE
Confidence            43 111111                        112111000                  1    122334567888888


Q ss_pred             EEec---C---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec---CCcE
Q 001258          528 STAL---D---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSI  598 (1113)
Q Consensus       528 s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i  598 (1113)
                      +.+.   .   ..+++|+-+ +.....-+    ++..                 --..++|-|.|+++++...   ...|
T Consensus       226 Vss~~~~~~~~R~iRVy~Re-G~L~stSE----~v~g-----------------Le~~l~WrPsG~lIA~~q~~~~~~~V  283 (928)
T PF04762_consen  226 VSSVEPETGSRRVIRVYSRE-GELQSTSE----PVDG-----------------LEGALSWRPSGNLIASSQRLPDRHDV  283 (928)
T ss_pred             EEEEEcCCCceeEEEEECCC-ceEEeccc----cCCC-----------------ccCCccCCCCCCEEEEEEEcCCCcEE
Confidence            8764   2   468888654 11111111    1111                 1224566666666766543   4567


Q ss_pred             EEEECCCCceEEEEccC--CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          599 KFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       599 ~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      .+|.- +|-.-..|...  .....|..+.|++|+..|++...|. |.+|-..+-.-.++..-.                 
T Consensus       284 vFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~-----------------  344 (928)
T PF04762_consen  284 VFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR-----------------  344 (928)
T ss_pred             EEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE-----------------
Confidence            77774 34333333322  2334689999999999999987654 999987654211111100                 


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                                                          +   .....+..
T Consensus       345 --------------------------------------------------------------------~---~~~~~~~~  353 (928)
T PF04762_consen  345 --------------------------------------------------------------------F---SSSESVNF  353 (928)
T ss_pred             --------------------------------------------------------------------c---cCCCCCCc
Confidence                                                                                0   01112223


Q ss_pred             EEEeCCC-ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEE
Q 001258          757 LIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVM  834 (1113)
Q Consensus       757 ~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~  834 (1113)
                      +.|+|.. ..|...+.+|.+..+++.                  |+...+..                  .+| |.-.++
T Consensus       354 ~~Wdpe~p~~L~v~t~~g~~~~~~~~------------------~~v~~s~~------------------~~~~D~g~va  397 (928)
T PF04762_consen  354 VKWDPEKPLRLHVLTSNGQYEIYDFA------------------WDVSRSPG------------------SSPNDNGTVA  397 (928)
T ss_pred             eEECCCCCCEEEEEecCCcEEEEEEE------------------EEEEecCC------------------CCccCceEEE
Confidence            5666643 345666665666665542                  22111110                  011 222344


Q ss_pred             EEeCCeEEEEECCCCce-----eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee--------eeeec--
Q 001258          835 SASGGKISLFNMMTFKT-----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--------KSKLK--  899 (1113)
Q Consensus       835 ~~sdg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--------~~~l~--  899 (1113)
                      +..+.++.+-.+.....     ...+. -...|.+++|++ ++..+|+-..||.|.+|.......        ...+.  
T Consensus       398 VIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~  475 (928)
T PF04762_consen  398 VIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLD  475 (928)
T ss_pred             EEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccc
Confidence            44455677766654322     12333 346799999999 676788899999999998543211        11111  


Q ss_pred             --------ccccCeEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          900 --------GHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       900 --------~h~~~V~~l~~s~d~~~L~s~s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                              .-...+..++|..+...++..+.+   ..+.++++...+... ........    ...+..+...++...++
T Consensus       476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~  550 (928)
T PF04762_consen  476 SMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSA-SVESSTEV----DGVVLIISSSPDSGSLY  550 (928)
T ss_pred             cccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCce-eEEEEecc----CceEEEEeeCCCCcEEE
Confidence                    123457888998887777766654   578888874432110 01111111    12334444445554344


Q ss_pred             E-EcCCeEEEEeCCcccee-eccccCCCCCCeeEEEECCCCC---EEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          969 V-VHETQLAIFETTKLECV-KQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       969 ~-~~d~~v~v~d~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~---~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      . ..+|.+..++....... ..|..   .-+-..++...+..   .++.-+..|.+++    .+..++            
T Consensus       551 ~q~~~G~v~~~~~~~~~~~~~~fp~---~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la------------  611 (928)
T PF04762_consen  551 IQTNDGKVFQLSSDGELSQIVKFPQ---PCPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA------------  611 (928)
T ss_pred             EEECCCEEEEeecCCCccccccCCC---CCcEEEEEEECCccceeEEEEECCCCEEEE----CCEEEe------------
Confidence            4 67888876665443321 12211   11222222222322   3444444454443    233331            


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                       ..+++..+  +   +.+|+.......+++..+.
T Consensus       612 -~~~tSF~v--~---~~~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  612 -SNCTSFAV--T---DSFLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             -cCCceEEE--E---cCEEEEEecCceEEEEECc
Confidence             34554333  2   3466666667889999988

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=7.1e-11  Score=117.54  Aligned_cols=350  Identities=16%  Similarity=0.243  Sum_probs=215.1

Q ss_pred             ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-----eeeEeeccC------------cCEEEEeeeecCCceEE
Q 001258          464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFI  526 (1113)
Q Consensus       464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l  526 (1113)
                      ..+-|.+|.|..+|.  +|++|..+|.|.++.-....     ....++.|.            ..|..+.|....+...+
T Consensus        24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F  101 (433)
T KOG1354|consen   24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF  101 (433)
T ss_pred             hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence            345789999999999  89999999999999744222     223444453            35778888888888889


Q ss_pred             EEEecCCcEEEEEcCCCCCee-----eeeCCCCceEEEEEcc----------CCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          527 FSTALDGKIKAWLYDNLGSRV-----DYEAPGRWCTTMAYSA----------DGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       527 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~v~~~~~s~----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      +..+.|.+|++|.+.......     ........+.++....          ..++++...+...+..+.++.|...+++
T Consensus       102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS  181 (433)
T KOG1354|consen  102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS  181 (433)
T ss_pred             EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee
Confidence            999999999999887544332     0111112222222211          1235666667778889999999998877


Q ss_pred             EecCCcEEEEECCCC-ceEEEE--ccCC---CCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccc
Q 001258          592 AGDDFSIKFWDMDSV-QLLTSI--DADG---GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  664 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~-~~~~~~--~~~~---~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  664 (1113)
                      + .|=.|.+|++.-- +.....  +.+.   -+..|++..|+| ..+.++..++.|+|++.|++...-+-.    |    
T Consensus       182 A-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~----h----  252 (433)
T KOG1354|consen  182 A-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA----H----  252 (433)
T ss_pred             c-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc----h----
Confidence            5 4778999998632 222222  1111   123477888998 467778888889999998864411100    0    


Q ss_pred             cccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecc
Q 001258          665 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  744 (1113)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~  744 (1113)
                                                                                   -+++..+.           
T Consensus       253 -------------------------------------------------------------sKlfEepe-----------  260 (433)
T KOG1354|consen  253 -------------------------------------------------------------SKLFEEPE-----------  260 (433)
T ss_pred             -------------------------------------------------------------hhhhcccc-----------
Confidence                                                                         00000000           


Q ss_pred             cCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258          745 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  824 (1113)
Q Consensus       745 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l  824 (1113)
                                     .|..+                                         ....      +--..|..+
T Consensus       261 ---------------dp~~r-----------------------------------------sffs------eiIsSISDv  278 (433)
T KOG1354|consen  261 ---------------DPSSR-----------------------------------------SFFS------EIISSISDV  278 (433)
T ss_pred             ---------------CCcch-----------------------------------------hhHH------HHhhhhhce
Confidence                           00000                                         0000      023457789


Q ss_pred             EEecCCCEEEEEeCCeEEEEECC-CCceeeeecCCCC---------------CeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          825 ALSKNDSYVMSASGGKISLFNMM-TFKTMATFMPPPP---------------AATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       825 ~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~~~~---------------~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                      .|+++|+++++-+--+|++||+. ..+.+.+++-|..               .-..++|+. ++.++++|+....+++|+
T Consensus       279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence            99999999999877899999994 5566666655531               124578888 788999999999999999


Q ss_pred             cccceee-eeecccccC--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCc
Q 001258          889 VRVDEVK-SKLKGHSKR--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  965 (1113)
Q Consensus       889 ~~~~~~~-~~l~~h~~~--V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  965 (1113)
                      +..|... .++......  ...+   ..-+.+.+++......+|-..         +..   .    ..+...+|+|...
T Consensus       358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf---~----kkilh~aWhp~en  418 (433)
T KOG1354|consen  358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDF---R----KKILHTAWHPKEN  418 (433)
T ss_pred             CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch---------hhh---h----hHHHhhccCCccc
Confidence            7665322 223222221  1111   112344444444432222100         000   0    2467789999999


Q ss_pred             EEEEEcCCeEEEE
Q 001258          966 HFLVVHETQLAIF  978 (1113)
Q Consensus       966 ~l~~~~d~~v~v~  978 (1113)
                      .+|++.-..+.+|
T Consensus       419 ~ia~aatnnlyif  431 (433)
T KOG1354|consen  419 SIAVAATNNLYIF  431 (433)
T ss_pred             eeeeeecCceEEe
Confidence            9999766777665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=8e-11  Score=134.10  Aligned_cols=221  Identities=10%  Similarity=0.024  Sum_probs=137.2

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+...+.+.+|||||++++.+..  .+..|.+|++.+|+...                    +....+.+..++|||
T Consensus       193 ~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~SP  252 (429)
T PRK03629        193 VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAFSP  252 (429)
T ss_pred             EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEECC
Confidence            33446778999999999997544432  24579999998876432                    111222345689999


Q ss_pred             CCCeEEEE-eCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCc--EEEEeCCCCceeeE
Q 001258          431 DGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKT--IKVWDATNGAKQYI  504 (1113)
Q Consensus       431 dg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~--i~iwd~~~~~~~~~  504 (1113)
                      ||+.|+.. +.+|  .|.+||+.+++..+    +..+...+....|+|||+.  |+..+. ++.  |.++|+.++.. ..
T Consensus       253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-~~  325 (429)
T PRK03629        253 DGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-QR  325 (429)
T ss_pred             CCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-EE
Confidence            99999865 3344  58899999876433    4445567889999999995  544443 444  44456666644 34


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +..+.......+|+  ++|.+|+..+.+   ..|.+||+.++... .+... .......                     
T Consensus       326 lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~---------------------  380 (429)
T PRK03629        326 ITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPS---------------------  380 (429)
T ss_pred             eecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCce---------------------
Confidence            44344445556665  455677665543   35788888765432 22211 1122334                     


Q ss_pred             ecCCCCEEEEEecCCc---EEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          582 FDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                      |+|+|.+++..+.++.   ++++++ +|.....+..+.  ..+...+|+|
T Consensus       381 ~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        381 IAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             ECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCC--CCcCCcccCC
Confidence            4555556777766553   677787 455555565443  3577888887

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=2.4e-10  Score=131.26  Aligned_cols=216  Identities=13%  Similarity=0.080  Sum_probs=140.5

Q ss_pred             CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001258          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  457 (1113)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  457 (1113)
                      ..|.+||.......                    .+..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            37888887654332                    25567789999999999999998763   468999999988643  


Q ss_pred             eeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-CC-
Q 001258          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG-  533 (1113)
Q Consensus       458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg-  533 (1113)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.++.. ..+..+........|++  ||..|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSP--DGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcC--CCCEEEEEECCCCC
Confidence              25566778889999999996 3455666655  77779887765 45655666566667664  5566766553 33 


Q ss_pred             -cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceE
Q 001258          534 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  609 (1113)
Q Consensus       534 -~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  609 (1113)
                       .|.+||+..... ..+......+....|+|||+                     +++..+.+   ..|.+||+.++. .
T Consensus       314 ~~Iy~~d~~g~~~-~~lt~~~~~~~~~~~SpdG~---------------------~ia~~~~~~~~~~i~~~d~~~~~-~  370 (435)
T PRK05137        314 PQLYVMNADGSNP-RRISFGGGRYSTPVWSPRGD---------------------LIAFTKQGGGQFSIGVMKPDGSG-E  370 (435)
T ss_pred             CeEEEEECCCCCe-EEeecCCCcccCeEECCCCC---------------------EEEEEEcCCCceEEEEEECCCCc-e
Confidence             577777654332 22222222333444555554                     55554432   368888986554 3


Q ss_pred             EEEccCCCCCCcCeEEECCCCCEEEEEECC------CcEEEEEcCCC
Q 001258          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG  650 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~  650 (1113)
                      ..+...   ..+....|+|||+.|+..+.+      ..+.++++..+
T Consensus       371 ~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            333322   136789999999998876553      24677777554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=1.5e-09  Score=118.02  Aligned_cols=524  Identities=12%  Similarity=0.135  Sum_probs=303.3

Q ss_pred             ccCcccCCccccCCcccCCCCCCCCCCCCCCcceeEecc-CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe
Q 001258          318 NLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL  396 (1113)
Q Consensus       318 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~  396 (1113)
                      |+.++|..+.-..+...     .........-.+-+++. |...|.-+.|+.+.+. |-+...+|.|.||-+-.|.-.. 
T Consensus        35 dGlLKVlKl~t~t~d~~-----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~E-  107 (1189)
T KOG2041|consen   35 DGLLKVLKLGTDTTDLN-----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCE-  107 (1189)
T ss_pred             cceeEEEEccccCCccc-----ccccccccccchhhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHH-
Confidence            67777776555443321     11111111122345555 9999999999999996 8888899999999988765322 


Q ss_pred             eeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC
Q 001258          397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP  476 (1113)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~  476 (1113)
                                      ..+-......|.+++|+.||..++....||.|.|=.++.++....  .+++.  -...+.|++|
T Consensus       108 ----------------EMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLkg~--~l~hv~ws~D  167 (1189)
T KOG2041|consen  108 ----------------EMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELKGQ--LLAHVLWSED  167 (1189)
T ss_pred             ----------------HHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcchh--eccceeeccc
Confidence                            223345567899999999999999999999999988877654332  23332  2457899999


Q ss_pred             CCeeEEEEecCCCcEEEEeCCCC-------ceee----EeeccCcCEEEEeeeec------CCceEEEEEecCCcEEEEE
Q 001258          477 NKQLCVITCGDDKTIKVWDATNG-------AKQY----IFEGHEAPVYSVCPHHK------ENIQFIFSTALDGKIKAWL  539 (1113)
Q Consensus       477 ~~~~~l~s~s~d~~i~iwd~~~~-------~~~~----~~~~h~~~v~~~~~~~~------~~~~~l~s~~~dg~i~iwd  539 (1113)
                      .+  .++.+-..|.+.++|.+..       .+.-    .+......|..++|...      ++...++.+...|.+.+-.
T Consensus       168 ~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR  245 (1189)
T KOG2041|consen  168 LE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMR  245 (1189)
T ss_pred             HH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhh
Confidence            99  4666777899999996532       1111    11112223455555321      3556788888888887775


Q ss_pred             cCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEE
Q 001258          540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLT  610 (1113)
Q Consensus       540 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~  610 (1113)
                      -.+......+... -.+....|+++|                     ..|++++.         .+.|++|.. -|+.+.
T Consensus       246 ~eND~~Pvv~dtg-m~~vgakWnh~G---------------------~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~g  302 (1189)
T KOG2041|consen  246 SENDPEPVVVDTG-MKIVGAKWNHNG---------------------AVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVG  302 (1189)
T ss_pred             hcCCCCCeEEecc-cEeecceecCCC---------------------cEEEEccCcccccCccccceEEEecc-chhheE
Confidence            5443333332222 344455555555                     45666553         235677764 577888


Q ss_pred             EEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccc
Q 001258          611 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG  690 (1113)
Q Consensus       611 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1113)
                      .++..+.  .|++++|-..|-.++.+- |+.|.+=+++.... ...++.-.--+...                       
T Consensus       303 tlkvpg~--~It~lsWEg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~TvVy~y~~-----------------------  355 (1189)
T KOG2041|consen  303 TLKVPGS--CITGLSWEGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEETVVYVYQK-----------------------  355 (1189)
T ss_pred             EEecCCc--eeeeeEEcCCceEEEEEe-cceEEEEeecccce-EEEeeeEEEEEEcc-----------------------
Confidence            8877654  799999998887777654 57887766654411 11110000000000                       


Q ss_pred             cccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEee
Q 001258          691 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  770 (1113)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~  770 (1113)
                                           +       -.-.-.|.+||..+.....+.          -....++++..+.-.++.-.
T Consensus       356 ---------------------~-------e~p~y~i~Fwdtk~nek~vK~----------V~~~~~~a~~~ehCvL~~~~  397 (1189)
T KOG2041|consen  356 ---------------------E-------ELPQYGIMFWDTKTNEKTVKT----------VTHFENMAFYREHCVLINRQ  397 (1189)
T ss_pred             ---------------------C-------CCcceEEEEEecccChhhhhh----------hcceeehheecccEEEEecc
Confidence                                 0       000135678887754332221          12344566666655556555


Q ss_pred             cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCc
Q 001258          771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK  850 (1113)
Q Consensus       771 ~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~  850 (1113)
                      .++.+.-++.-. .++      ......+.+. -|..+..      ....|.-.-..-++.+++.++...+.+|.....+
T Consensus       398 d~~~i~e~s~le-~~~------~~~~l~LCNS-IGT~lD~------kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK  463 (1189)
T KOG2041|consen  398 DDGVIPEYSTLE-NRS------RVYFLQLCNS-IGTSLDY------KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPK  463 (1189)
T ss_pred             ccCCCcchhhhh-ccc------ceEEEeeecc-cCCcCCC------CcceeeeeEEEecceEEEEeccccEEEEEEeccc
Confidence            566555431100 000      0000001110 0110000      1111222223347778888887788888753211


Q ss_pred             e--------------------------------eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258          851 T--------------------------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  898 (1113)
Q Consensus       851 ~--------------------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l  898 (1113)
                      .                                ..++.+...+|.+++.+.   ++|.++-..|.|+-|.+...-+....
T Consensus       464 ~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y  540 (1189)
T KOG2041|consen  464 FNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSY  540 (1189)
T ss_pred             hhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeecc
Confidence            1                                123344556777787764   68999999999999999886655443


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEE
Q 001258          899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA  976 (1113)
Q Consensus       899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~  976 (1113)
                      . -...|..++..-+...++...--|.+.+.|++-. .......+...+.     ..|+.+.|..|+..+.+ -....+.
T Consensus       541 ~-~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmy  614 (1189)
T KOG2041|consen  541 P-VNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMY  614 (1189)
T ss_pred             c-cCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEE
Confidence            3 4466888988878888888888888888887631 1111111111111     25777888887766655 3444566


Q ss_pred             EEeCC
Q 001258          977 IFETT  981 (1113)
Q Consensus       977 v~d~~  981 (1113)
                      |++-.
T Consensus       615 ifrgn  619 (1189)
T KOG2041|consen  615 IFRGN  619 (1189)
T ss_pred             EecCc
Confidence            66644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=2.4e-09  Score=108.97  Aligned_cols=282  Identities=9%  Similarity=0.090  Sum_probs=183.6

Q ss_pred             CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC---CeEEEEEccccccCCCCceeeeecCee
Q 001258          723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL  799 (1113)
Q Consensus       723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~l  799 (1113)
                      +..|.+|++.+.........+    .......+-++++|+++.|.++..+   |.+.-|.+                   
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            568999999853322221111    2256778899999999988887665   56666654                   


Q ss_pred             cCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cceeee--ecCCCCC----------eeE
Q 001258          800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF  864 (1113)
Q Consensus       800 w~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~  864 (1113)
                       |..+|.+....... ....+.+.++++++|++|+++.  .|.|.++-++. |.....  ...|.+.          +.+
T Consensus        72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence             33334422111100 0233447899999999999997  69999999965 332211  1123332          788


Q ss_pred             EEEecCCCcEEEEEe-cCCcEEEEEcccceeeeeec---ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC--ccc
Q 001258          865 LAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGW--EKQ  937 (1113)
Q Consensus       865 l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~--~~~  937 (1113)
                      ..|.| ++++|++.+ .--.|.+|++..|++...-.   .-...-+.|.|+|++++....++ +++|.+|..+..  +..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            99999 888888765 23389999999776442211   23345689999999999877764 899999999883  322


Q ss_pred             cccccccCCCCCCCCCCCceEEEccCCcEEEEEcC--CeEEEEeCCc--cceeeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258          938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE--TQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d--~~v~v~d~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                      ....+...............+.+++||++|.++..  ..|.+|.+..  ++....-...-+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            22333333333333346678999999999999744  3688877653  3322111112335557899999999999998


Q ss_pred             eCC-CcEEEEecC--CCcee
Q 001258         1014 FLD-ATVCVFSAA--NLKLR 1030 (1113)
Q Consensus      1014 ~~D-g~v~vwd~~--~~~~~ 1030 (1113)
                      +.| ..|.||..+  +|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            876 458888764  55443

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.38  E-value=5.4e-11  Score=120.88  Aligned_cols=256  Identities=12%  Similarity=0.077  Sum_probs=177.8

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEe-cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      +....+|..++|.-|++.=+..+. .+..+.............    +|++.         ......+.|..++..  ..
T Consensus        52 ~~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg  116 (412)
T KOG3881|consen   52 VDELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DG  116 (412)
T ss_pred             cchhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CC
Confidence            345678899999888765444444 566666666665544332    12222         234455677777764  34


Q ss_pred             eEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCCCCeeEEEEecCC--CcEEEEeCCCCceeeEeec---
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG---  507 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--~~i~iwd~~~~~~~~~~~~---  507 (1113)
                      .|++|-.+|.+.+|..+.+..-. ....+.. ...+..|.-++...+ ++++||..  ..++|||++..+.+..-+.   
T Consensus       117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpn  194 (412)
T KOG3881|consen  117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPN  194 (412)
T ss_pred             EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCC
Confidence            67777889999999998543110 1112332 357888888887775 67779988  8899999998866554332   


Q ss_pred             ----cC--cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          508 ----HE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       508 ----h~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                          -.  -+++++.|.+..+...+++++.-+.+++||.+.... +..+......                     +.++
T Consensus       195 D~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~---------------------is~~  253 (412)
T KOG3881|consen  195 DRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP---------------------ISST  253 (412)
T ss_pred             ccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc---------------------ceee
Confidence                12  234556666553357899999999999999986433 2234444444                     4445


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEE-EccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ...|+++++++|...+.+..||++.++.... +.+-  .+.|+++..+|.++++++++-|..+||+|+.+.
T Consensus       254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  254 GLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             eecCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            5555666899999999999999999988776 5444  457999999999999999999999999999885

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=8.4e-11  Score=134.75  Aligned_cols=220  Identities=12%  Similarity=0.091  Sum_probs=136.7

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      .+..|...+.+.+|||||++ |+..+.   ...|.+||+.+++...                    +..+.+...+++||
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~-la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~~~S  256 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKK-LAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAPSFS  256 (433)
T ss_pred             EeecCCCccccccCCCCCCE-EEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCceEC
Confidence            44457788999999999997 454443   3469999998876543                    22233345678999


Q ss_pred             CCCCeEEE-EeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCceee
Q 001258          430 PDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQY  503 (1113)
Q Consensus       430 pdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d~~--i~iwd~~~~~~~~  503 (1113)
                      |||+.|+. .+.+|  .|.+||+.+++..    .+..|.......+|+|||+.  ++.++ .++.  |.++|+.+++...
T Consensus       257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~~~~  330 (433)
T PRK04922        257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGSAER  330 (433)
T ss_pred             CCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCCeEE
Confidence            99998864 45554  5999999988643    35556666678999999995  44443 4444  6667776665433


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCC---cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                       +..+.......+|++  +|++|+..+.++   .|.+||+.++... .+. +........|+|||+              
T Consensus       331 -lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~--------------  391 (433)
T PRK04922        331 -LTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGS--------------  391 (433)
T ss_pred             -eecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCC--------------
Confidence             322333344566654  556776654432   5899998765433 222 111233445555554              


Q ss_pred             EecCCCCEEEEEec---CCcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          581 QFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                             +++..+.   .+.|++++... .....+..+.  ..+...+|+|
T Consensus       392 -------~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        392 -------MVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             -------EEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence                   5555443   34688888854 4445554332  2466777876

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.7e-10  Score=132.18  Aligned_cols=215  Identities=13%  Similarity=0.156  Sum_probs=136.8

Q ss_pred             CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC---CCeEEEEEccCCceeee
Q 001258          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  457 (1113)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  457 (1113)
                      ..|.+||...+...                    .+..|...+.+.+|||||+.|+..+.   +..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            46889998654332                    24456778999999999999998764   3469999999886532 


Q ss_pred             eeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCc
Q 001258          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK  534 (1113)
Q Consensus       458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~  534 (1113)
                         +..+.+...+.+|+|||+. ++++.+.++  .|.+||+.+++. ..+..+.......+|++  ||..|+.++ .+|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCC
Confidence               3344555668999999996 334545555  599999988764 44555555555667654  556676655 4555


Q ss_pred             --EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceE
Q 001258          535 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  609 (1113)
Q Consensus       535 --i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  609 (1113)
                        |.++|+.++.. ..+..........+                     |+|+|++++..+.+   ..|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~-~~lt~~g~~~~~~~---------------------~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSA-ERLTFQGNYNARAS---------------------VSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCe-EEeecCCCCccCEE---------------------ECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence              55556554332 22222222222344                     44555566654433   26999999887755


Q ss_pred             EEEccCCCCCCcCeEEECCCCCEEEEEECC---CcEEEEEcCC
Q 001258          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD  649 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~  649 (1113)
                       .+.. +.  ......|+|||++++..+.+   +.|.+++...
T Consensus       374 -~Lt~-~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        374 -TLTP-GS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -ECCC-CC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             3332 11  34567999999988877653   3466777643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.36  E-value=9.5e-13  Score=145.39  Aligned_cols=215  Identities=17%  Similarity=0.194  Sum_probs=147.4

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      .|+..-+|++||-+.++ |+.|+..|.|+++++.+|....                   ...+|...|+.+.=|.||..+
T Consensus      1099 d~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~-------------------s~ncH~SavT~vePs~dgs~~ 1158 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE-------------------SVNCHQSAVTLVEPSVDGSTQ 1158 (1516)
T ss_pred             ccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-------------------cccccccccccccccCCccee
Confidence            37788899999999996 9999999999999999997665                   367899999999999999998


Q ss_pred             EEEeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-ec---cC
Q 001258          436 GVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG---HE  509 (1113)
Q Consensus       436 as~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~---h~  509 (1113)
                      ++.+.-.  ...+|++.+-  .....++.    .-.++.|+....+  -+.|..-..+.+||++++.++.++ .+   ..
T Consensus      1159 Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~--r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~ 1230 (1516)
T KOG1832|consen 1159 LTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF--RALGTEADDALLYDVQTCSPLQTYLTDTVTSS 1230 (1516)
T ss_pred             eeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH--HHhcccccceEEEecccCcHHHHhcCcchhhh
Confidence            8765433  4789998752  22222333    4568899877553  333444457889999999887763 22   11


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ..-++..|+|..  .+++-   ||  .+||++..+.+..+..-..                      ...-.|+|.|+.+
T Consensus      1231 y~~n~a~FsP~D--~LIln---dG--vLWDvR~~~aIh~FD~ft~----------------------~~~G~FHP~g~eV 1281 (1516)
T KOG1832|consen 1231 YSNNLAHFSPCD--TLILN---DG--VLWDVRIPEAIHRFDQFTD----------------------YGGGGFHPSGNEV 1281 (1516)
T ss_pred             hhccccccCCCc--ceEee---Cc--eeeeeccHHHHhhhhhhee----------------------cccccccCCCceE
Confidence            122444555543  44442   44  5799987655544432110                      0112467777778


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                      +.-++     |||+++.+.++....-..    ..+.|+..|..++..
T Consensus      1282 IINSE-----IwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1282 IINSE-----IWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             Eeech-----hhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence            87664     999999988877654432    568888888776643

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.35  E-value=1.4e-09  Score=120.48  Aligned_cols=252  Identities=14%  Similarity=0.210  Sum_probs=160.7

Q ss_pred             CCCccEEEEecCCCEEEEEeC-----CeEEEEECCCC--ce--eeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE
Q 001258          818 EEAVPCFALSKNDSYVMSASG-----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  887 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~sd-----g~i~vwd~~~~--~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw  887 (1113)
                      ......++++|++++|.+...     +.|..|++...  +.  +............++++| ++++|+++. .+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence            345667999999999998863     57988888753  22  233332344567899999 788887776 58999999


Q ss_pred             Eccc-ceeeee---ec----------ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcc--ccccccccCCCCCC
Q 001258          888 NVRV-DEVKSK---LK----------GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEK--QKNRFLQIPTGRTP  950 (1113)
Q Consensus       888 d~~~-~~~~~~---l~----------~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~--~~~~~~~~~~~~~~  950 (1113)
                      ++.. +.+...   +.          .-.....++.|+||+++|++... ...|.+|+++....  ..........+   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---  191 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---  191 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence            9986 433322   11          11244678999999999887753 34699999987552  11122233333   


Q ss_pred             CCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--ccc--eeecccc---CCC-CCCeeEEEECCCCCEEEEEe-CCCcE
Q 001258          951 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLE--CVKQWVP---RES-SAPITHATFSCDSQLVYACF-LDATV 1019 (1113)
Q Consensus       951 ~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~--~~~~~~~---~~h-~~~v~~l~~s~dg~~l~s~~-~Dg~v 1019 (1113)
                        ...+.++|+|||+++++.  .++.|.+|++.  ++.  .+.....   ... ......|+++|||++|++.. .++.|
T Consensus       192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence              345899999999999884  56789999988  432  2222211   111 23688999999999988776 45779


Q ss_pred             EEEecC--CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe-CCCcEEEEeccCCCccc
Q 001258         1020 CVFSAA--NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus      1020 ~vwd~~--~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~ 1083 (1113)
                      .+|+++  ++++. .+.   ..+   .+...|..++++| +|++|+++. .+++|.+|++....+.|
T Consensus       270 ~vf~~d~~~g~l~-~~~---~~~---~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l  328 (345)
T PF10282_consen  270 SVFDLDPATGTLT-LVQ---TVP---TGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKL  328 (345)
T ss_dssp             EEEEECTTTTTEE-EEE---EEE---ESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             EEEEEecCCCceE-EEE---EEe---CCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence            999993  34432 221   011   1123355688888 678877666 56799999885444333

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.1e-10  Score=133.32  Aligned_cols=223  Identities=15%  Similarity=0.129  Sum_probs=133.8

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+...+.+.+|||||++++++...+  ..|.+||+.+++...                    +....+.+.+.+|||
T Consensus       190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP  249 (427)
T PRK02889        190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAPAWSP  249 (427)
T ss_pred             EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccceEECC
Confidence            4456788999999999999744443222  359999999886543                    222234566899999


Q ss_pred             CCCeEEE-EeCCCeEEEEEc--cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCceeeEe
Q 001258          431 DGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQYIF  505 (1113)
Q Consensus       431 dg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~--~~~~~~~~~  505 (1113)
                      ||+.|+. .+.++...||.+  .++. .+   .+..|...+....|+|||+.+ ++++..++...||.+  .++.. ..+
T Consensus       250 DG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~l-~f~s~~~g~~~Iy~~~~~~g~~-~~l  323 (427)
T PRK02889        250 DGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRSI-YFTSDRGGAPQIYRMPASGGAA-QRV  323 (427)
T ss_pred             CCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCEE-EEEecCCCCcEEEEEECCCCce-EEE
Confidence            9999875 567777666654  4443 32   355566667788999999952 333444566667754  44443 222


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCC---cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  582 (1113)
                      ..+.......+|+  ++|++|+..+.++   .|.+||+.++.... +.. ........|+|||+                
T Consensus       324 t~~g~~~~~~~~S--pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~p~~spdg~----------------  383 (427)
T PRK02889        324 TFTGSYNTSPRIS--PDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDESPSFAPNGR----------------  383 (427)
T ss_pred             ecCCCCcCceEEC--CCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccCceECCCCC----------------
Confidence            2222233345554  5667887766554   59999988754332 221 12223445555555                


Q ss_pred             cCCCCEEEEEecC-C--cEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258          583 DTTKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  629 (1113)
Q Consensus       583 ~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  629 (1113)
                           .|+..+.+ |  .+++.+. ++.....+..+.  ..+...+|+|-
T Consensus       384 -----~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~--g~~~~p~wsp~  425 (427)
T PRK02889        384 -----YILYATQQGGRSVLAAVSS-DGRIKQRLSVQG--GDVREPSWGPF  425 (427)
T ss_pred             -----EEEEEEecCCCEEEEEEEC-CCCceEEeecCC--CCCCCCccCCC
Confidence                 55554432 2  3555566 455555554332  24677788773

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.33  E-value=4e-09  Score=112.76  Aligned_cols=203  Identities=11%  Similarity=0.099  Sum_probs=123.4

Q ss_pred             EEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee---
Q 001258          823 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK---  895 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~---  895 (1113)
                      .++++|||++|++..   +..|.+.|+.+++.+.++..... ..-...+. +. +. +-+.||......+.+ |+..   
T Consensus       109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~-~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~  184 (352)
T TIGR02658       109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDC-YHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKP  184 (352)
T ss_pred             eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCC-cEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEee
Confidence            467777877777664   57788888888887777654221 11111211 11 11 122344443333222 1111   


Q ss_pred             -eeecccccCeEE-EEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC----CCCCCCCceEEEccCCcEEE
Q 001258          896 -SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       896 -~~l~~h~~~V~~-l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~spdg~~l~  968 (1113)
                       ..+.+-..++.. -.|++ ||+++..... |+|.+-|+...+.............    ....+....++++++|++++
T Consensus       185 ~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       185 TEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence             111110011100 03455 8888776666 9999999765443322222221111    01113444599999999988


Q ss_pred             E-Ec--C--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258          969 V-VH--E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       969 ~-~~--d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      + ..  .        +.|.++|..+++.+..+..   ...+..++++||++ +|++.+ .++.|.|+|..+++.+..+
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            8 31  1        4799999999999998875   45899999999999 777666 5788999999999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=2.2e-10  Score=116.52  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=103.0

Q ss_pred             CCccEEEEecC--CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258          819 EAVPCFALSKN--DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       819 ~~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  894 (1113)
                      -.++++.|-+.  ...||++. -+.+++||...+ +++..+.-...+++++...| +++++.+|..-|.+..||++.+++
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl  281 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKL  281 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCcee
Confidence            35567778776  77888888 699999999854 45677777788999999999 999999999999999999999998


Q ss_pred             eee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258          895 KSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       895 ~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~  936 (1113)
                      +.. +.+-.+.|++|..+|.+++|+++|-|..|||+|+++.+.
T Consensus       282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence            876 899999999999999999999999999999999999544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.32  E-value=1.1e-10  Score=116.13  Aligned_cols=155  Identities=12%  Similarity=0.225  Sum_probs=108.1

Q ss_pred             eEEEEecCCCcEEEEEec----------CCcEEEEEccc-ceeeeeecc-cccCeEEEEEcCCCCEEEEE--eCCCcEEE
Q 001258          863 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV  928 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~L~s~--s~D~~v~i  928 (1113)
                      ..+.|++ .|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.++..  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4577888 6665554332          13455555532 233344432 34579999999999987654  45789999


Q ss_pred             EeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc----CCeEEEEeCCccceeeccccCCCCCCeeEEEEC
Q 001258          929 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus       929 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~----d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
                      ||++. +.    ......      ..+..+.|||+|++++++.    .|.+.+||..+.+.+....    ...++.++||
T Consensus        88 yd~~~-~~----i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKG-KK----IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCcc-cE----eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            99973 11    111111      2467899999999999842    4679999999999887764    3457899999


Q ss_pred             CCCCEEEEEeC------CCcEEEEecCCCceeeecC
Q 001258         1005 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus      1005 ~dg~~l~s~~~------Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      |||++++++..      |..++||++. |+++.+..
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999998874      7889999985 66665543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=3.1e-10  Score=130.37  Aligned_cols=220  Identities=11%  Similarity=0.040  Sum_probs=138.5

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....|...+.+.+|||||++|+.+..  .+..|.+||+.+++...                    +..+.+.+.+.+|||
T Consensus       196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g~~~~~~~SP  255 (435)
T PRK05137        196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPGMTFAPRFSP  255 (435)
T ss_pred             EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCCcccCcEECC
Confidence            44458889999999999997444432  24689999998886532                    334556778899999


Q ss_pred             CCCeEEE-EeCCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec-CC--CcEEEEeCCCCceeeE
Q 001258          431 DGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIKVWDATNGAKQYI  504 (1113)
Q Consensus       431 dg~~las-~~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s-~d--~~i~iwd~~~~~~~~~  504 (1113)
                      ||+.|+. .+.++.  |.+||+.+++..    .+..+........|+|||+.  ++..+ .+  ..|.+||+.++.. ..
T Consensus       256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~  328 (435)
T PRK05137        256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR  328 (435)
T ss_pred             CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence            9998864 455554  777898887643    35566667788999999995  44333 33  3688888776554 44


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +..+...+....|++  +|+.|+..+.+   ..|.+||+..... ..+.. ...+....|+|||+               
T Consensus       329 lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~---------------  389 (435)
T PRK05137        329 ISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGR---------------  389 (435)
T ss_pred             eecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCC---------------
Confidence            443445566667654  55677666543   3577788754332 22221 22344555555555               


Q ss_pred             ecCCCCEEEEEec-C-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          582 FDTTKNRFLAAGD-D-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       582 ~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                            .++..+. .     ..++++|+..+.. ..+...   ..+...+|+|
T Consensus       390 ------~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~---~~~~~p~Wsp  432 (435)
T PRK05137        390 ------VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTP---GDASDPAWSP  432 (435)
T ss_pred             ------EEEEEEccCCCCCcceEEEEECCCCce-EEccCC---CCccCcccCC
Confidence                  4544332 1     3688888866544 344322   2356677776

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.9e-10  Score=129.73  Aligned_cols=193  Identities=12%  Similarity=0.143  Sum_probs=123.0

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEE
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~  492 (1113)
                      +..+...+.+.+|||||+.|+..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            34567789999999999999987643   459999999887543    3334456778999999995 344667788766


Q ss_pred             EEeCC-CCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEE
Q 001258          493 VWDAT-NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       493 iwd~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      ||.+. .+.....+..+........|++  ||..|+..+ .+|...+|.+.... ....+.........           
T Consensus       266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~-----------  332 (427)
T PRK02889        266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTS-----------  332 (427)
T ss_pred             EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCc-----------
Confidence            66543 2333555655655556667654  556666554 35667777654221 11111111111222           


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  640 (1113)
                                ..|+|+|++++..+.++   .|.+||+.+++... +...   .......|+|||+.|+.++.++
T Consensus       333 ----------~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~---~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        333 ----------PRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT---TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             ----------eEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC---CCccCceECCCCCEEEEEEecC
Confidence                      34555556676655443   69999998877543 3222   1246789999999998887654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.29  E-value=3.1e-10  Score=113.06  Aligned_cols=280  Identities=14%  Similarity=0.225  Sum_probs=172.9

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-  433 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-  433 (1113)
                      +...+-|.++.|..+|.+ ||+|..+|.|.++.-..-.. ....|+. ..+...+.+-....-.-...|..+.|.+++. 
T Consensus        22 vteadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~-~ey~~~t-~fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   22 VTEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYK-GEYNFQT-EFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             echhcceeeEEeecccce-EeecCCCCeEEEeecccccc-cceeeee-eeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            345678999999999996 99999999999997543222 1111110 0000011110000111234789999998654 


Q ss_pred             -eEEEEeCCCeEEEEEccCCceee--------------------------------eeee-eecccCCeeEEEEcCCCCe
Q 001258          434 -LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPNKQ  479 (1113)
Q Consensus       434 -~las~~~d~~i~iwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~~~~~  479 (1113)
                       .++..+.|.+|++|.+.......                                +... -.+|.--|++|.++.|.. 
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E-  177 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE-  177 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc-
Confidence             56667789999999886422110                                0001 135777899999999998 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceee---Eeec-----cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee----
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQY---IFEG-----HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----  547 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~---~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----  547 (1113)
                       .++++ +|=.|.+|+++--..-.   .++.     -..-|++..|+|... ++++-.+..|+|++.|++......    
T Consensus       178 -t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  178 -TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAHSK  254 (433)
T ss_pred             -eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcchhh
Confidence             45555 57889999987432212   1222     234578888988765 688888889999999998532211    


Q ss_pred             eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC-CCCceEEEEccCCCC--------
Q 001258          548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL--------  618 (1113)
Q Consensus       548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~--------  618 (1113)
                      .+..+..+.        . +.+...--..|.-+.|+.+|+++++-. --+|++||+ ...+++.++..|...        
T Consensus       255 lfEepedp~--------~-rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~lY  324 (433)
T KOG1354|consen  255 LFEEPEDPS--------S-RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLY  324 (433)
T ss_pred             hhccccCCc--------c-hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHHHh
Confidence            111111111        0 001111112444566677777776543 368999999 445666666544311        


Q ss_pred             --CCc---CeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          619 --PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       619 --~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                        ..|   ..++|+.++.++++|+..+.+++++...|.
T Consensus       325 EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  325 ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             hccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence              112   358999999999999999999999977763

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.28  E-value=9.8e-08  Score=99.56  Aligned_cols=171  Identities=16%  Similarity=0.161  Sum_probs=134.7

Q ss_pred             CCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-cEEEEEcccceeeeeecccccCeEE
Q 001258          829 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       829 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      +|.+++..+.|+..+.+...+-.++.  ++...|.-..+.- +++-++.|..|| .+-|||..+++ +..+...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQV--GKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEc--CCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEE
Confidence            78899999999998888766554433  3566788888887 677889999999 99999998776 4556667788999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC----CeEEEEeCCc
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK  982 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d----~~v~v~d~~~  982 (1113)
                      +..++||++++.+.....+.+.|++++....     +.....   +-|+.+.|+|+++++|.+ -+    ..|+++|..+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~~-----idkS~~---~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVRL-----IDKSEY---GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCeeE-----eccccc---ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            9999999999999998999999999976421     122222   478999999999999986 23    4799999999


Q ss_pred             cceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258          983 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      ++......+   .+.=.+-+|.||+++|.--+
T Consensus       479 ~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTTP---TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecCC---cccccCcccCCCCcEEEEEe
Confidence            988776554   33345678999999987554

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=9e-09  Score=108.52  Aligned_cols=294  Identities=12%  Similarity=0.127  Sum_probs=184.2

Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCcc-EEEEecCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CFALSKND  830 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~-~l~~s~~~  830 (1113)
                      ..|..+.|+|.+++|.+-.....+   +. ..+..+...   ...+.+||..+|.++...... ....... -+.|+.+.
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~---~p-e~e~sp~~~---~n~~~vwd~~sg~iv~sf~~~-~q~~~~Wp~~k~s~~D  143 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPII---EP-EIEISPFTS---KNNVFVWDIASGMIVFSFNGI-SQPYLGWPVLKFSIDD  143 (561)
T ss_pred             CCceecccCcccceeeeeccCCcc---Ch-hhccCCccc---cCceeEEeccCceeEeecccc-CCcccccceeeeeecc
Confidence            356677778888877665544332   00 001111111   014668888888866542211 1222234 67899999


Q ss_pred             CEEEEEeCCeEEEEECCCCcee-eeecCC-CCCeeEEEEecC-CCcEEEE-----EecCCcEEEEEcccceeeeeecccc
Q 001258          831 SYVMSASGGKISLFNMMTFKTM-ATFMPP-PPAATFLAFHPQ-DNNIIAI-----GMDDSSIQIYNVRVDEVKSKLKGHS  902 (1113)
Q Consensus       831 ~~l~~~sdg~i~vwd~~~~~~~-~~~~~~-~~~i~~l~~s~~-d~~~la~-----g~~dg~v~iwd~~~~~~~~~l~~h~  902 (1113)
                      +++|--....+.|+++ +.... ..+..- ...|....|+|. ++..||.     +..+++++||.+..++.+.+..-..
T Consensus       144 ~y~ARvv~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk  222 (561)
T COG5354         144 KYVARVVGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK  222 (561)
T ss_pred             hhhhhhccCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe
Confidence            9888777788999997 32221 111111 356888999993 2334444     4577899999998776665433323


Q ss_pred             cCeEEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-
Q 001258          903 KRITGLAFSHALNVLVSSG-----------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  970 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s-----------~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-  970 (1113)
                      -.=..+.|.+.|++|..--           ....++|+++.....      .+..+..   ++|...+|.|+++.+++. 
T Consensus       223 ~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i------~V~~~~~---~pVhdf~W~p~S~~F~vi~  293 (561)
T COG5354         223 VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI------PVEKDLK---DPVHDFTWEPLSSRFAVIS  293 (561)
T ss_pred             ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc------ceecccc---ccceeeeecccCCceeEEe
Confidence            3335678888888766421           124578888774221      1111212   489999999999988873 


Q ss_pred             --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceee-ecCCCcccCCCcc
Q 001258          971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC-RINPSAYLPAGVS 1044 (1113)
Q Consensus       971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~-~~~~~~~~~~gh~ 1044 (1113)
                        .+-.+.++|++.. ....+.    ...=..+.|||.+++++.++-|   |.|-+||........ .+.       +..
T Consensus       294 g~~pa~~s~~~lr~N-l~~~~P----e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~-------~~n  361 (561)
T COG5354         294 GYMPASVSVFDLRGN-LRFYFP----EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-------GLN  361 (561)
T ss_pred             cccccceeecccccc-eEEecC----CcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee-------cCC
Confidence              5678999999866 433333    4455678899999999987766   679999998765554 443       211


Q ss_pred             cCccceEEEEeCCCCCEEEEEe------CCCcEEEEeccCCC
Q 001258         1045 SNVHPLVIAAHPQEPNEFALGL------SDGGVHVFEPLESE 1080 (1113)
Q Consensus      1045 ~~v~~i~~~~~p~d~~~l~s~~------~Dg~v~vW~~~~~~ 1080 (1113)
                          .-.+-|+| |+.++.+..      .|..+.+|++...+
T Consensus       362 ----~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         362 ----TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             ----ceEeeccC-CceEEEecCCCcccccCcceEEEEecCch
Confidence                11367898 677765543      37899999998776

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=4.4e-09  Score=111.57  Aligned_cols=295  Identities=12%  Similarity=0.136  Sum_probs=186.7

Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      ..|.-+.|||..++|++-+..-...-|+-.           ....+.+||+.+|.+.............-.-..||.|++
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-----------e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDN-----------EGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK  318 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccC-----------CCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence            346778888888888886654322222100           001245667777765554322101111223468999999


Q ss_pred             EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEcccceeeeeecccccCeE
Q 001258          832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT  906 (1113)
Q Consensus       832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~  906 (1113)
                      ++|.-..+.|.||+..+...+-.-.-....|....||| .+++||.=...     .++.+-.+.+++.+++-.-|.-.=.
T Consensus       319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc  397 (698)
T KOG2314|consen  319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC  397 (698)
T ss_pred             eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence            99988888999999877554433333456789999999 88888865432     3677888888888877666654445


Q ss_pred             EEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--Ec--C
Q 001258          907 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E  972 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~--d  972 (1113)
                      .|-|-.+|.+|+.--.          =..+.|+.+......        -........|...+|-|.|..+++  +.  .
T Consensus       398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp--------ve~velke~vi~FaWEP~gdkF~vi~g~~~k  469 (698)
T KOG2314|consen  398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP--------VEVVELKESVIAFAWEPHGDKFAVISGNTVK  469 (698)
T ss_pred             EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC--------ceeeecchheeeeeeccCCCeEEEEEccccc
Confidence            6778888888875321          123456665542221        111111136788999999999888  32  3


Q ss_pred             CeEEEEeCCc-c---ceeeccccCCCCCCeeEEEECCCCCEEEEEe---CCCcEEEEecCCCceeeecCCCcccCCCccc
Q 001258          973 TQLAIFETTK-L---ECVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1113)
Q Consensus       973 ~~v~v~d~~~-~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~ 1045 (1113)
                      .++.+|.+++ .   +++..+.    ....+.+.|+|.|++++.+.   ..|.+..+|..-......         +|..
T Consensus       470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~---------~~~e  536 (698)
T KOG2314|consen  470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT---------ASPE  536 (698)
T ss_pred             cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc---------cCcc
Confidence            4788888873 2   2333332    35678899999999988654   468899999875332221         2222


Q ss_pred             CccceEEEEeCCCCCEEEEEeC------CCcEEEEeccCCC
Q 001258         1046 NVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1080 (1113)
Q Consensus      1046 ~v~~i~~~~~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1080 (1113)
                      +-....+-|.| -|++++++++      |..-++|++....
T Consensus       537 h~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  537 HFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             ccccccceECC-CCCEEEEeeehhhhccccceEEEEeecHH
Confidence            22222488999 5899999876      5567888876543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.26  E-value=7.2e-10  Score=110.70  Aligned_cols=216  Identities=12%  Similarity=0.120  Sum_probs=144.6

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEc-cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY-HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .+.||.+.|++...-|-..-+.+.+.|.+++||-- +.++....+  ...-..+++++.+.++..  .|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence            57899999999999998888999999999999954 344433221  113356789999999888  6888888899887


Q ss_pred             EeCC----CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258          494 WDAT----NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       494 wd~~----~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      +.+.    ....++....|...|..+.|+..+  .++++.+.|..+.---.+.+..+-.+...     +.+..++     
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-----~~~t~~~-----  162 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYNFE-----TPASALQ-----  162 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceEee-----ccCCCCc-----
Confidence            7654    344556677899999999877655  68999999887743333332222111100     0000000     


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECC--CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                                  +.-  .+...|...|.|..-.+.  .-.++..+.++  ...+.+++|.+....|.+|..|..+.+||+
T Consensus       163 ------------~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  163 ------------FDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             ------------eee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence                        000  024445555666555443  33455566544  668999999999999999999999999999


Q ss_pred             CCCccceeccccccc
Q 001258          648 SDGIRLLRTFENLAY  662 (1113)
Q Consensus       648 ~~~~~~~~~~~~~~~  662 (1113)
                      .-.......+.+|..
T Consensus       227 gg~~g~~~el~gh~~  241 (404)
T KOG1409|consen  227 GGRKGTAYELQGHND  241 (404)
T ss_pred             cCCcceeeeeccchh
Confidence            766444444444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.25  E-value=3.9e-10  Score=112.28  Aligned_cols=151  Identities=20%  Similarity=0.417  Sum_probs=105.1

Q ss_pred             EEEEEcCCCCeEEEEEec---------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          362 MSMDFHPVQQTLLLVGTN---------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ..+.|+|+|++|++....         -|...||.+....                .+... +.....++|.+++|+|+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~----------------~~~~~-i~l~~~~~I~~~~WsP~g   71 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN----------------IPVES-IELKKEGPIHDVAWSPNG   71 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC----------------Cccce-eeccCCCceEEEEECcCC
Confidence            568899999987776652         1234444442211                11111 122334579999999999


Q ss_pred             CeEEEE--eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCceeeEeec
Q 001258          433 SLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       433 ~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~~~  507 (1113)
                      +.||+.  ..++.|.+||++ ++.+.   .+  +...++.|.|+|+|+  +++.++.   .|.|.+||+++.+.+.... 
T Consensus        72 ~~favi~g~~~~~v~lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-  142 (194)
T PF08662_consen   72 NEFAVIYGSMPAKVTLYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-  142 (194)
T ss_pred             CEEEEEEccCCcccEEEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence            998765  356789999997 33333   33  356789999999999  6776653   4679999999888887765 


Q ss_pred             cCcCEEEEeeeecCCceEEEEEec------CCcEEEEEcC
Q 001258          508 HEAPVYSVCPHHKENIQFIFSTAL------DGKIKAWLYD  541 (1113)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~  541 (1113)
                      |. .+..++|+|  +|+++++++.      |+.++||+..
T Consensus       143 ~~-~~t~~~WsP--dGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  143 HS-DATDVEWSP--DGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cC-cEEEEEEcC--CCCEEEEEEeccceeccccEEEEEec
Confidence            33 467788764  5688888864      7889999875

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.24  E-value=1.8e-08  Score=106.40  Aligned_cols=133  Identities=11%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceE
Q 001258          881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  958 (1113)
Q Consensus       881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  958 (1113)
                      ...++|+++.... +....+-.++|...+|.|+++.+++.+  .+..+.++|+...     .....++.      .=..+
T Consensus       254 esnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~  321 (561)
T COG5354         254 ESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTI  321 (561)
T ss_pred             cceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------ccccc
Confidence            3568888887433 333335678999999999887766554  7888999999873     11222222      23578


Q ss_pred             EEccCCcEEEE-Ec---CCeEEEEeCCccceee-ccccCCCCCCeeEEEECCCCCEEEEEe------CCCcEEEEecCCC
Q 001258          959 QFHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANL 1027 (1113)
Q Consensus       959 ~~spdg~~l~~-~~---d~~v~v~d~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~------~Dg~v~vwd~~~~ 1027 (1113)
                      .|+|.++++++ +.   .|.+.+||....-.+. .+.    .....-+.|+||+.++.+..      .|..|.|||+...
T Consensus       322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            89999999988 43   3689999987654443 443    23445567999999988765      3788999999754


Q ss_pred             ce
Q 001258         1028 KL 1029 (1113)
Q Consensus      1028 ~~ 1029 (1113)
                      ..
T Consensus       398 ~~  399 (561)
T COG5354         398 KV  399 (561)
T ss_pred             hh
Confidence            43

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=5.5e-08  Score=99.27  Aligned_cols=256  Identities=13%  Similarity=0.204  Sum_probs=170.3

Q ss_pred             CCCCccEEEEecCCCEEEEEe----CCeEEEEECCC--Cceee--eecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEE
Q 001258          817 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  887 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~--~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iw  887 (1113)
                      ....++-++++|+++.|.++.    +|.|..|.++.  |+...  .......+-+.+++++ ++++|+++. .-|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            566788899999999998885    36788887764  44321  1222223348899999 888888876 45799999


Q ss_pred             Eccc-ceeee--eecccccC----------eEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          888 NVRV-DEVKS--KLKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       888 d~~~-~~~~~--~l~~h~~~----------V~~l~~s~d~~~L~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      -+.. |.+..  .+..|.+.          +-...|.|++++|++.+  .| .|.+|+++.+............+     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC-----
Confidence            9865 43221  22335554          78889999999999886  34 49999999776554444444444     


Q ss_pred             CCCceEEEccCCcEEEEE--cCCeEEEEeCCcc--ce--ee---ccccCC-CCCCeeEEEECCCCCEEEEEeC-CCcEEE
Q 001258          953 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL--EC--VK---QWVPRE-SSAPITHATFSCDSQLVYACFL-DATVCV 1021 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~--~~--~~---~~~~~~-h~~~v~~l~~s~dg~~l~s~~~-Dg~v~v 1021 (1113)
                      ...+.+.|+|++++..+.  -+++|.+|..+..  +.  ++   .+..+- -......|.+++||++|++... ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            356999999999988873  6789999998763  21  11   111111 1456788999999999998763 246888


Q ss_pred             EecCC--CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-CcEEEEeccCCCccccCCC
Q 001258         1022 FSAAN--LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPP 1087 (1113)
Q Consensus      1022 wd~~~--~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~ 1087 (1113)
                      |.++.  +++.. +.   .   -......|-.+.+.| +|++|+++..| .+|.++.+....+.+....
T Consensus       271 f~V~~~~g~L~~-~~---~---~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~  331 (346)
T COG2706         271 FSVDPDGGKLEL-VG---I---TPTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLG  331 (346)
T ss_pred             EEEcCCCCEEEE-EE---E---eccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecc
Confidence            87753  33221 11   0   111223344688888 56777776665 5899998876665555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=3.6e-09  Score=122.08  Aligned_cols=205  Identities=14%  Similarity=0.116  Sum_probs=138.1

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC---CcEEEEEcccceeeeeecccccCeEEEEEcCCCC
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  915 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  915 (1113)
                      ..|.++|..... .+.+..+...+...+|+| ||++|+.+..+   ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence            358888876443 445555666788999999 88888877644   47999999887643 3344556677899999998


Q ss_pred             EEEE-EeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC----CeEEEEeCCccceeec
Q 001258          916 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ  988 (1113)
Q Consensus       916 ~L~s-~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d----~~v~v~d~~~~~~~~~  988 (1113)
                      .|+. .+.++  .|++||+.++....     ... +.   .......|+|||++|+.+.+    ..|.++++.+++....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~-----l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l  317 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTR-----LTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL  317 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEE-----CCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            7764 44444  58889988754321     111 11   12456789999999887422    2688888887765433


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEeCCC---cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          989 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg---~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      .   .+...+..+.|+|||++|+.++.++   .|.+||+.++... .+.       .. ....  ...|+| ||+.|+..
T Consensus       318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~-------~~-~~~~--~p~~sp-dg~~l~~~  382 (417)
T TIGR02800       318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLT-------DT-GLDE--SPSFAP-NGRMILYA  382 (417)
T ss_pred             e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-Ecc-------CC-CCCC--CceECC-CCCEEEEE
Confidence            2   2345677889999999999888776   7999999886543 222       11 1111  257888 67777776


Q ss_pred             eCCCc
Q 001258         1066 LSDGG 1070 (1113)
Q Consensus      1066 ~~Dg~ 1070 (1113)
                      +.++.
T Consensus       383 ~~~~~  387 (417)
T TIGR02800       383 TTRGG  387 (417)
T ss_pred             EeCCC
Confidence            66653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.20  E-value=3.8e-08  Score=105.29  Aligned_cols=237  Identities=9%  Similarity=0.070  Sum_probs=149.4

Q ss_pred             EecCCCEEEEEe-----------CCeEEEEECCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-c-CCcEE
Q 001258          826 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ  885 (1113)
Q Consensus       826 ~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~d~~~la~g~-~-dg~v~  885 (1113)
                      +||||+.|+++.           ++.|.+||..+++.+..+.....       ....++++| ||++|.+.. . +..|-
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            999999887664           37799999999999988764322       234789999 888888765 4 78999


Q ss_pred             EEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC-ceEEEcc-C
Q 001258          886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D  963 (1113)
Q Consensus       886 iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~sp-d  963 (1113)
                      +.|+.+++.+.++.--. ...-...+.+..+  .-+.||......++...........+..+...   .+ ..-.|++ |
T Consensus       132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d  205 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD-CYHIFPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS  205 (352)
T ss_pred             EEECCCCcEEEEEeCCC-CcEEEEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence            99999999988776421 2222222222222  12334444443333222111111111111000   00 0114456 9


Q ss_pred             CcEEEEEcCCeEEEEeCCc-----cceeeccccC-----CCCCCeeEEEECCCCCEEEEEeC----------CCcEEEEe
Q 001258          964 QIHFLVVHETQLAIFETTK-----LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFL----------DATVCVFS 1023 (1113)
Q Consensus       964 g~~l~~~~d~~v~v~d~~~-----~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~vwd 1023 (1113)
                      |+++.++.+|.|.+.|+.+     .+....+...     -..+.+.-+++++|++.+++...          .+.|.++|
T Consensus       206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            9999998889999999543     2322222111     01333445999999999888542          25799999


Q ss_pred             cCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEe-CCCcEEEEeccCCC
Q 001258         1024 AANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1080 (1113)
Q Consensus      1024 ~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1080 (1113)
                      ..+++.+.++..      |  ..+.  .++++| |++ +|++.. .++.|.+.|..+++
T Consensus       286 ~~t~kvi~~i~v------G--~~~~--~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       286 AKTGKRLRKIEL------G--HEID--SINVSQ-DAKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCCeEEEEEeC------C--Ccee--eEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence            999999988762      2  1233  488888 677 766555 68899999999987

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=5.5e-09  Score=120.50  Aligned_cols=191  Identities=14%  Similarity=0.116  Sum_probs=122.6

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--c
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  490 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~  490 (1113)
                      +..+...+...+|||||++|+.+..+   ..|.+||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44566678999999999999987643   479999999886432    3445667788999999995 334455444  5


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      |.+||+.++.. ..+..+........|++  +|..|+..+. ++  .|.++|+.+.+. ..+..........        
T Consensus       260 i~~~d~~~~~~-~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~--------  327 (417)
T TIGR02800       260 IYVMDLDGKQL-TRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASP--------  327 (417)
T ss_pred             EEEEECCCCCE-EECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCe--------
Confidence            88999887754 34444444444556654  5566665543 34  466777664332 2222222333333        


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  640 (1113)
                                   .|+|++++++.++.++   .|.+||+.++... .+....   ......|+|||+.|+..+.++
T Consensus       328 -------------~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       328 -------------SWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDTG---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             -------------EECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccCCC---CCCCceECCCCCEEEEEEeCC
Confidence                         4555555677766655   7899998876543 332221   235678999999888887765

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.19  E-value=4.6e-09  Score=120.19  Aligned_cols=222  Identities=11%  Similarity=0.041  Sum_probs=129.0

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+...+.+..|||||++++.+...++  .|.+||+.+++....                    ....+.....+|||
T Consensus       212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wSP  271 (448)
T PRK04792        212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFSP  271 (448)
T ss_pred             EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeECC
Confidence            34456778999999999998555544343  588889988765321                    11122334689999


Q ss_pred             CCCeEEEE-eCCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceeeEe
Q 001258          431 DGSLFGVA-YSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIF  505 (1113)
Q Consensus       431 dg~~las~-~~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~~~  505 (1113)
                      ||+.|+.. +.++.  |.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++... +
T Consensus       272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-L  345 (448)
T PRK04792        272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-L  345 (448)
T ss_pred             CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-E
Confidence            99988764 55664  777888887643    34456666788999999995 333443344  46667777776433 2


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEec-CCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEe
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  582 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  582 (1113)
                      ..+.......+|+  +||++|+..+. ++.  |.++|+.++... .+... .......|+|||                 
T Consensus       346 t~~g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG-----------------  404 (448)
T PRK04792        346 TFEGEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNG-----------------  404 (448)
T ss_pred             ecCCCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCC-----------------
Confidence            2122222334555  45566665544 444  444566554322 11111 111223455554                 


Q ss_pred             cCCCCEEEEEe-cCC--cEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          583 DTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       583 ~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                          +.++..+ .++  .+++++. +|.....+....  ..+...+|+|
T Consensus       405 ----~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~--g~~~~p~Wsp  446 (448)
T PRK04792        405 ----TMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ--GEVKSPAWSP  446 (448)
T ss_pred             ----CEEEEEEecCCceEEEEEEC-CCCceEECcCCC--CCcCCCccCC
Confidence                4555433 333  3777786 455555565432  2466778876

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.18  E-value=3.8e-09  Score=119.77  Aligned_cols=223  Identities=10%  Similarity=0.067  Sum_probs=131.2

Q ss_pred             CCCCcEEEEEcCCCCeE--EEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTL--LLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~l--l~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ....+..=+|||||+.+  +++...+|  .|.+.++.+|+...                    +....+.....+|||||
T Consensus       183 ~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        183 EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTFSPRK  242 (428)
T ss_pred             CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEECCCC
Confidence            45566778999999862  23444443  57788888776543                    22233345568999999


Q ss_pred             CeEEEEeC-----CCeEEEEEccCCc--eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe--CCC-Ccee
Q 001258          433 SLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD--ATN-GAKQ  502 (1113)
Q Consensus       433 ~~las~~~-----d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd--~~~-~~~~  502 (1113)
                      +.||..+.     +..+.+|++.++.  ....  ...++.+.....+|+|||+. ++++...++...+|.  +.. +...
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~g~~~  319 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPEGQSP  319 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECcccccce
Confidence            99987653     3335557776532  1221  12223344577899999995 233334566555554  432 3334


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeE
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  579 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  579 (1113)
                      ..+..+...+....|+|  ||+.|+..+.+   ..|.+||+.+++... +......+....|+|||+             
T Consensus       320 ~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~-------------  383 (428)
T PRK01029        320 RLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSL-------------  383 (428)
T ss_pred             EEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCC-------------
Confidence            55555555666677765  45667665443   368999988765433 222223345566666665             


Q ss_pred             EEecCCCCEEEEEe---cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258          580 VQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  629 (1113)
Q Consensus       580 ~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  629 (1113)
                              .|+...   ....|++||+.+++........   ..+...+|+|-
T Consensus       384 --------~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~---g~~~~p~Ws~~  425 (428)
T PRK01029        384 --------HLVYSAGNSNESELYLISLITKKTRKIVIGS---GEKRFPSWGAF  425 (428)
T ss_pred             --------EEEEEECCCCCceEEEEECCCCCEEEeecCC---CcccCceecCC
Confidence                    444322   2467889999887765544322   23567788874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.16  E-value=7.8e-09  Score=119.21  Aligned_cols=224  Identities=11%  Similarity=0.074  Sum_probs=132.6

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      ......+...+...+|||||++|+++...+  ..|.+||+.+++...                    +....+.+...+|
T Consensus       191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~~~  250 (430)
T PRK00178        191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAPAW  250 (430)
T ss_pred             ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCeEE
Confidence            334556788899999999999855554333  368999998886543                    1222334557899


Q ss_pred             cCCCCeEEE-EeCCC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCceee
Q 001258          429 SPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQY  503 (1113)
Q Consensus       429 spdg~~las-~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~i~iwd~~~~~~~~  503 (1113)
                      ||||++|+. .+.++  .|.+||+.+++..    .+..+........|+|||+.+ +++...++  .|.++|+.+++...
T Consensus       251 SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~  325 (430)
T PRK00178        251 SPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER  325 (430)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE
Confidence            999999885 44444  5888899987643    244566667788999999962 33333333  57778887776433


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEec-CC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                       +...........|++  +|..|+..+. ++  .|.+||+.++.... +.. ........|+|||+              
T Consensus       326 -lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~p~~spdg~--------------  386 (430)
T PRK00178        326 -VTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDESPSVAPNGT--------------  386 (430)
T ss_pred             -eecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCCceECCCCC--------------
Confidence             221112223345554  5566766554 33  47788887654322 211 11112334555554              


Q ss_pred             EecCCCCEEEEEec-C--CcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          581 QFDTTKNRFLAAGD-D--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                             +++..+. +  ..|++++... .....+....  ..+...+|+|
T Consensus       387 -------~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        387 -------MLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             -------EEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence                   5555443 2  3467777743 3334444322  2456677776

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4.2e-08  Score=104.36  Aligned_cols=320  Identities=11%  Similarity=0.164  Sum_probs=199.3

Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----------CcEEEEE
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKILA  646 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd  646 (1113)
                      +.+.|+|.|.+|++-...| |.+|--.+...++.+...    .|.-+.|||..+||++-+..           ..++|||
T Consensus       214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp----~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWD  288 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFYHP----GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWD  288 (698)
T ss_pred             eeEEecCCceEEEEEeccc-eeeecCccHHHHHhccCC----CceeeecCCccceEEEecCCccccCcccCCCceEEEEE
Confidence            3466666666777766544 678987766666666432    57889999999999987542           3466666


Q ss_pred             cCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCce
Q 001258          647 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  726 (1113)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  726 (1113)
                      +.+| ...+.+.                                                                    
T Consensus       289 I~tG-~lkrsF~--------------------------------------------------------------------  299 (698)
T KOG2314|consen  289 IATG-LLKRSFP--------------------------------------------------------------------  299 (698)
T ss_pred             cccc-chhccee--------------------------------------------------------------------
Confidence            6666 3332221                                                                    


Q ss_pred             eeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc
Q 001258          727 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  806 (1113)
Q Consensus       727 ~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~  806 (1113)
                                     .+.-    ....-.-+.||.|+++++.-..| .|.||+...              ..+.|..+  
T Consensus       300 ---------------~~~~----~~~~WP~frWS~DdKy~Arm~~~-sisIyEtps--------------f~lld~Ks--  343 (698)
T KOG2314|consen  300 ---------------VIKS----PYLKWPIFRWSHDDKYFARMTGN-SISIYETPS--------------FMLLDKKS--  343 (698)
T ss_pred             ---------------ccCC----CccccceEEeccCCceeEEeccc-eEEEEecCc--------------eeeecccc--
Confidence                           1100    00111235688899988776664 677776432              11111111  


Q ss_pred             ccccccCCCCCCCCccEEEEecCCCEEEEEe---C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-
Q 001258          807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-  879 (1113)
Q Consensus       807 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s---d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-  879 (1113)
                       +        .-..|....|+|.+..||.-.   +   ..+.+..+.+++.+++-.-+.-.-..+-|-. .|.+|+.-- 
T Consensus       344 -l--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkvd  413 (698)
T KOG2314|consen  344 -L--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKVD  413 (698)
T ss_pred             -c--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEEE
Confidence             0        234578889999999998765   1   4588888888888877665554445566766 677776532 


Q ss_pred             ---------cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCC
Q 001258          880 ---------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTG  947 (1113)
Q Consensus       880 ---------~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~  947 (1113)
                               .-..+.|+.+.....--..-.-...|...+|-|.|..+++-+.   -.++.+|.+++... ...+......
T Consensus       414 R~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~dk  492 (698)
T KOG2314|consen  414 RHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELDK  492 (698)
T ss_pred             eeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhcc
Confidence                     1123555555543322222234567899999999988776554   35789999885222 1222222222


Q ss_pred             CCCCCCCCceEEEccCCcEEEEE----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC------C
Q 001258          948 RTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------A 1017 (1113)
Q Consensus       948 ~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------g 1017 (1113)
                           .....+.|+|.|++++++    ..|.+..+|..-..+...-.+ . -...+.+.|.|.|+|+++++.-      .
T Consensus       493 -----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d~  565 (698)
T KOG2314|consen  493 -----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVDN  565 (698)
T ss_pred             -----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhcccc
Confidence                 245789999999999873    578899999885333332211 2 2356789999999999998853      3


Q ss_pred             cEEEEecC
Q 001258         1018 TVCVFSAA 1025 (1113)
Q Consensus      1018 ~v~vwd~~ 1025 (1113)
                      --++|+..
T Consensus       566 GYri~tfq  573 (698)
T KOG2314|consen  566 GYRIFTFQ  573 (698)
T ss_pred             ceEEEEee
Confidence            35566654

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.12  E-value=6.8e-09  Score=111.99  Aligned_cols=188  Identities=16%  Similarity=0.302  Sum_probs=147.2

Q ss_pred             cCCCEEEEEe-CCeEEEEECCCCceeeeecCC---CCCeeEEEEe------c-------------CCCcEEEEEecCCcE
Q 001258          828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI  884 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~s------~-------------~d~~~la~g~~dg~v  884 (1113)
                      |-..++|... ||.+++|+...++....|.+.   .+..++..|.      |             .|-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            3456777776 899999999988887776532   2334444442      1             134478889999999


Q ss_pred             EEEEcccceeeeeec--ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258          885 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                      .+|++..++....+.  .|.+.|+++.++.+-..|.|++.|+.+..|+......     .....+..+   .+..++++|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence            999999999888885  6999999999999999999999999999999988432     333333332   678999999


Q ss_pred             CCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCC-----CCEEEE-EeCCCcEEEEecCC
Q 001258          963 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVYA-CFLDATVCVFSAAN 1026 (1113)
Q Consensus       963 dg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s-~~~Dg~v~vwd~~~ 1026 (1113)
                      ||+.++++ .++|.+||+++++.+..|.  +|.++|.++.|..+     |.++++ ...+.-+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988874 4689999999999999998  99999999999887     777665 44556688887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=3e-08  Score=114.37  Aligned_cols=199  Identities=13%  Similarity=0.113  Sum_probs=122.0

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC--c
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  490 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~--~  490 (1113)
                      +..+...+...+|||||++|+..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            34566789999999999999887643   469999999886432    3333445667999999995 333454454  6


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCC--cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      |.+||+.+++. ..+..+........|++  ||..|+..+ .+|  .|.++|+.+++.. .+.........         
T Consensus       269 Iy~~d~~~~~~-~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~---------  335 (430)
T PRK00178        269 IYVMDLASRQL-SRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNAR---------  335 (430)
T ss_pred             EEEEECCCCCe-EEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccc---------
Confidence            88889888764 34555555555566654  455555444 344  4666676554322 11111111122         


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-C--c
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G  641 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~  641 (1113)
                                  ..|+|++++++..+. ++  .|.+||+.+++.. .+... .  ......|+|||+.++..+.+ +  .
T Consensus       336 ------------~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        336 ------------PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             ------------eEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence                        345555556665543 22  5888999887653 33221 1  22356899999999877654 2  3


Q ss_pred             EEEEEcC
Q 001258          642 IKILATS  648 (1113)
Q Consensus       642 i~iwd~~  648 (1113)
                      +.+++..
T Consensus       400 l~~~~~~  406 (430)
T PRK00178        400 LMLVSIN  406 (430)
T ss_pred             EEEEECC
Confidence            5566654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=3.9e-08  Score=111.32  Aligned_cols=305  Identities=12%  Similarity=0.077  Sum_probs=179.1

Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEE
Q 001258          481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  560 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~  560 (1113)
                      .++.++.++.|..+|..+|+.+..+.-.........    -++..++.++.+|.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            477888889999999999998876653332111222    2335788888999999999988877765443321110000


Q ss_pred             EccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCC---cCeEEECCCCCEEEEEE
Q 001258          561 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST  637 (1113)
Q Consensus       561 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~  637 (1113)
                      .                       .+..++.++.++.|+.||.++|+.+..+........   ..+...  .+..++.+.
T Consensus       143 v-----------------------~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~  197 (377)
T TIGR03300       143 V-----------------------ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF  197 (377)
T ss_pred             E-----------------------ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence            0                       123477788899999999999998877754321100   011111  134677888


Q ss_pred             CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcce
Q 001258          638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  717 (1113)
Q Consensus       638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  717 (1113)
                      .++.+..+|..+|......-.....                +                                      
T Consensus       198 ~~g~v~ald~~tG~~~W~~~~~~~~----------------g--------------------------------------  223 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWEQRVALPK----------------G--------------------------------------  223 (377)
T ss_pred             CCCEEEEEEccCCCEeeeeccccCC----------------C--------------------------------------
Confidence            8899999998888432211000000                0                                      


Q ss_pred             eeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258          718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  797 (1113)
Q Consensus       718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  797 (1113)
                         .. ..-++.+.                  ...+    .+  .+..+++++.+|.++.||..+++             
T Consensus       224 ---~~-~~~~~~~~------------------~~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~-------------  262 (377)
T TIGR03300       224 ---RT-ELERLVDV------------------DGDP----VV--DGGQVYAVSYQGRVAALDLRSGR-------------  262 (377)
T ss_pred             ---CC-chhhhhcc------------------CCcc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence               00 00000000                  0000    11  13456677778888887765332             


Q ss_pred             eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEE
Q 001258          798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII  875 (1113)
Q Consensus       798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~l  875 (1113)
                      .+|....+              .....+  .++..+++++ +|.|..+|..+++.+....... ....+...   .+..|
T Consensus       263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l  323 (377)
T TIGR03300       263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL  323 (377)
T ss_pred             EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence            13433210              011122  2345566555 8999999999998776553211 12222223   24578


Q ss_pred             EEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEE
Q 001258          876 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  929 (1113)
Q Consensus       876 a~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iw  929 (1113)
                      ++++.+|.|+++|..+++.+.++..+...+..--...+ ..|+.++.||.|+.+
T Consensus       324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence            88999999999999999999888876654433222223 458888999988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.10  E-value=7e-09  Score=111.90  Aligned_cols=146  Identities=15%  Similarity=0.241  Sum_probs=117.9

Q ss_pred             CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCe
Q 001258          762 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK  840 (1113)
Q Consensus       762 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~  840 (1113)
                      +-..++-|...|.|.+|+...                      |.+... +....|.+.|.++.++.+-..|.+++ |+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~----------------------g~it~~-~st~~h~~~v~~~~~~~~~~ciyS~~ad~~  125 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAG----------------------GEITAK-LSTDKHYGNVNEILDAQRLGCIYSVGADLK  125 (541)
T ss_pred             CceEEEeecCCccEEEEEecC----------------------CeEEEE-EecCCCCCcceeeecccccCceEecCCcee
Confidence            334466666778888877643                      222221 33345999999999999989999888 899


Q ss_pred             EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC-----CC
Q 001258          841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA-----LN  915 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d-----~~  915 (1113)
                      +..|+...+..++........+.+++++| |+..|++|+  ++|.+||+++++.+..|.||.++|.+++|.-+     |.
T Consensus       126 v~~~~~~~~~~~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~  202 (541)
T KOG4547|consen  126 VVYILEKEKVIIRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGK  202 (541)
T ss_pred             EEEEecccceeeeeeccCCCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccc
Confidence            99999999999999999999999999999 799999886  67999999999999999999999999999876     55


Q ss_pred             EEE-EEeCCCcEEEEeCCC
Q 001258          916 VLV-SSGADSQLCVWSSDG  933 (1113)
Q Consensus       916 ~L~-s~s~D~~v~iwd~~~  933 (1113)
                      ++. ++..+.-+.+|-+..
T Consensus       203 ~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  203 YVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eeeeccccccceeEEEEEc
Confidence            554 455666788887765

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.09  E-value=5.4e-08  Score=111.45  Aligned_cols=199  Identities=14%  Similarity=0.094  Sum_probs=117.9

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--  490 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--  490 (1113)
                      +..+...+.+..|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            34456688999999999999987543   358899998876432    2222334457899999996 3344556664  


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      |.+||+.+++. ..+..+.......+|++  ||..|+..+ .++.  |.++|+.+++.. .+..........+|+||   
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpD---  360 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPD---  360 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCC---
Confidence            77788877764 44554555556677765  455565444 3444  555566543322 22112222223344444   


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-c--
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-G--  641 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~--  641 (1113)
                                        |++++..+. ++  .|.++|+.+++.. .+....   ......|+|||+.|+..+.++ .  
T Consensus       361 ------------------G~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~  418 (448)
T PRK04792        361 ------------------GRSMIMVNRTNGKFNIARQDLETGAMQ-VLTSTR---LDESPSVAPNGTMVIYSTTYQGKQV  418 (448)
T ss_pred             ------------------CCEEEEEEecCCceEEEEEECCCCCeE-EccCCC---CCCCceECCCCCEEEEEEecCCceE
Confidence                              445555443 33  4666788777643 332221   123568999999888766543 3  


Q ss_pred             EEEEEcC
Q 001258          642 IKILATS  648 (1113)
Q Consensus       642 i~iwd~~  648 (1113)
                      +.+++..
T Consensus       419 l~~~~~~  425 (448)
T PRK04792        419 LAAVSID  425 (448)
T ss_pred             EEEEECC
Confidence            5666653

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.7e-08  Score=110.90  Aligned_cols=202  Identities=15%  Similarity=0.097  Sum_probs=116.4

Q ss_pred             CCCcceEEEEEcCCCCeEE---EEeCC--CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC----C
Q 001258          418 DPGVSVNRVIWSPDGSLFG---VAYSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----D  488 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----d  488 (1113)
                      .....+..-+|||||+.++   +...+  ..|.+.++.+++..+    +....+.....+|||||+++ +++...    |
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~~d  256 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGNPD  256 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCCcc
Confidence            3445667889999998633   34334  357778888876443    33344556678999999963 333322    3


Q ss_pred             CcEEEEeCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcC--CC-CCeeeeeCCCCceEEEEE
Q 001258          489 KTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD--NL-GSRVDYEAPGRWCTTMAY  561 (1113)
Q Consensus       489 ~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~--~~-~~~~~~~~~~~~v~~~~~  561 (1113)
                      ..+.+|++..+   .......++.+.....+|+  +||..|+..+ .+|...+|.+.  .. .....+......+....|
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wS--PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w  334 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFS--PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW  334 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence            33455777653   3222332222334455665  5556666554 46765566442  21 112222222233344455


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEec---CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                      +|||                     ++|+..+.   ...|.+||+.+++.......   ...+....|+|||+.|+....
T Consensus       335 SPDG---------------------~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wSpDG~~L~f~~~  390 (428)
T PRK01029        335 SPDG---------------------KKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWAIDSLHLVYSAG  390 (428)
T ss_pred             CCCC---------------------CEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEECCCCCEEEEEEC
Confidence            5555                     45555433   24699999988876543322   124577999999998876543


Q ss_pred             ---CCcEEEEEcCCC
Q 001258          639 ---DNGIKILATSDG  650 (1113)
Q Consensus       639 ---dg~i~iwd~~~~  650 (1113)
                         ...|.++++.++
T Consensus       391 ~~g~~~L~~vdl~~g  405 (428)
T PRK01029        391 NSNESELYLISLITK  405 (428)
T ss_pred             CCCCceEEEEECCCC
Confidence               345888888766

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.08  E-value=1.6e-08  Score=99.18  Aligned_cols=199  Identities=12%  Similarity=0.133  Sum_probs=134.8

Q ss_pred             ccEEEEecCCCEEEEEe-CCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc-cceeee
Q 001258          821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS  896 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~  896 (1113)
                      ..++.|++.+..++++. +|.+.+-+......  .+..+.|.-++....|+..+.+++.+|++|+.+.-||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45677888888888876 78888555544333  347889999999999998788999999999999999998 455553


Q ss_pred             e-ecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC--cEEEEEcC
Q 001258          897 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVVHE  972 (1113)
Q Consensus       897 ~-l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg--~~l~~~~d  972 (1113)
                      . -+-|...|.++.-+| .+.++++|+.|-.|++||.++-.+.      .....  -.+.|..+..+|.-  +.|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------l~~~~--v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------LFKAK--VGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc------cccCc--cccceEEEEecchhhhHHHHHHHh
Confidence            3 566888999998885 5789999999999999999863221      11111  11578999999853  34444544


Q ss_pred             CeEEEEeCCcccee---eccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEE-EEecCCC
Q 001258          973 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL 1027 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~---~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~-vwd~~~~ 1027 (1113)
                      +..+|.+...+..-   .......|.+-...-.|.....+|++++ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            55555555443221   1111224555555555644445677754 566644 7765554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=1.8e-08  Score=98.80  Aligned_cols=192  Identities=19%  Similarity=0.126  Sum_probs=134.3

Q ss_pred             CCCCcEEEEEc---CCCCeEEEEEecCCcEEEEecCCcceeEe-eeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~s---pdg~~ll~~gs~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      .++.+..+.|+   .+|...++-+-..|.|.++.....+.... +.+.            .  ..-....-.++.|++.+
T Consensus        68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls------------~--~ki~~~~~lslD~~~~~  133 (339)
T KOG0280|consen   68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS------------S--KKISVVEALSLDISTSG  133 (339)
T ss_pred             cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc------------h--hhhhheeeeEEEeeccC
Confidence            34556666665   34554566667788888887654332221 1110            0  00001134678999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeE-eeccCc
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEA  510 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-~~~h~~  510 (1113)
                      ..++++..+|.+.+-+..... +....++++|.-..+...|+..... ++.+||+|+.+..||++ .++.+.. .+-|..
T Consensus       134 ~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  134 TKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             ceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeec
Confidence            999999999999865554433 3344478899999999999987776 89999999999999999 4444443 456889


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  565 (1113)
                      .|.++.-++ +.+.+|++|+.|-.|++||.++..+...-...++.|..+..+|.-
T Consensus       212 GV~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~  265 (339)
T KOG0280|consen  212 GVVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEI  265 (339)
T ss_pred             ceEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchh
Confidence            999987554 355799999999999999999876665544555677777776643

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.03  E-value=1.1e-07  Score=118.85  Aligned_cols=256  Identities=9%  Similarity=0.071  Sum_probs=160.1

Q ss_pred             ccEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecC--------------CCCCeeEEEEecCCCcEEEEEe-cCCc
Q 001258          821 VPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIGM-DDSS  883 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d~~~la~g~-~dg~  883 (1113)
                      ...+++++++..++++ . ++.|++||... ..+..+.+              .-.....+++++ +++.|.++. .++.
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~  647 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHA  647 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCce
Confidence            3568898765544444 4 68899999864 44433322              112357899998 566555544 5578


Q ss_pred             EEEEEcccceeeeeecc--c---------------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccc---cc
Q 001258          884 IQIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FL  942 (1113)
Q Consensus       884 v~iwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~---~~  942 (1113)
                      |+++|..++. +.++.+  .               -...+.++|+| ++..+++.+.++.|++||..++......   ..
T Consensus       648 Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~  726 (1057)
T PLN02919        648 LREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE  726 (1057)
T ss_pred             EEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence            9999987754 333321  0               12346899999 5667777778899999998775431100   00


Q ss_pred             ccCCCCC---CCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceeecc-----------ccCC--------CCCCe
Q 001258          943 QIPTGRT---PTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQW-----------VPRE--------SSAPI  998 (1113)
Q Consensus       943 ~~~~~~~---~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~~~-----------~~~~--------h~~~v  998 (1113)
                      ....+..   ........++++|+|.+|++  ..++.|++||+.++......           ....        .-...
T Consensus       727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence            0000100   01124578999999986665  46789999999876532110           0000        11235


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCc-ccCCCcc--c-CccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258          999 THATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGVS--S-NVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus       999 ~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~-~~~~gh~--~-~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
                      ..++++++|.++++-..+++|++||..++.......... ....|..  + --.+..+++.+ +|+++++-+.+++|++|
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi  885 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL  885 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence            689999999988888889999999998877654332110 0000100  0 01234577777 78889998899999999


Q ss_pred             eccCCC
Q 001258         1075 EPLESE 1080 (1113)
Q Consensus      1075 ~~~~~~ 1080 (1113)
                      |+.+++
T Consensus       886 d~~~~~  891 (1057)
T PLN02919        886 DLNKGE  891 (1057)
T ss_pred             ECCCCc
Confidence            999876

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.02  E-value=1.8e-09  Score=129.26  Aligned_cols=196  Identities=19%  Similarity=0.337  Sum_probs=155.4

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +-..|.++.=+|.-.+ .+||+.||.|++|.+..+..+..     |+            ..|. ..|+.+.|+.+|..+.
T Consensus      2207 ~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~~ 2267 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKFG 2267 (2439)
T ss_pred             ccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCcee
Confidence            4578899999999996 88999999999999998887753     22            2233 7899999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec---CCCcEEEEeCCC-C--ceeeEeeccCc
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATN-G--AKQYIFEGHEA  510 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~-~--~~~~~~~~h~~  510 (1113)
                      .+..||.+.+|.+..    +++...+.|.....+..|..  .  .+++++   .++.+.+||..- +  .++.  ..|.+
T Consensus      2268 i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~ 2337 (2439)
T KOG1064|consen 2268 IVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDG 2337 (2439)
T ss_pred             eeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecCC
Confidence            999999999999882    24446788999999999986  3  466654   578999999652 2  2333  78999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .++++++.|..  ++|++||.+|.|++||++..+.+..+..         +                     + ...+++
T Consensus      2338 gaT~l~~~P~~--qllisggr~G~v~l~D~rqrql~h~~~~---------~---------------------~-~~~~f~ 2384 (2439)
T KOG1064|consen 2338 GATVLAYAPKH--QLLISGGRKGEVCLFDIRQRQLRHTFQA---------L---------------------D-TREYFV 2384 (2439)
T ss_pred             CceEEEEcCcc--eEEEecCCcCcEEEeehHHHHHHHHhhh---------h---------------------h-hhheee
Confidence            99999977655  7999999999999999997666555443         1                     1 123689


Q ss_pred             EEecCCcEEEEECCCCceEEEEcc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                      +|+..|.++||++.....+..+..
T Consensus      2385 ~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             ccCcccceEEEEccccchhhcCch
Confidence            999999999999998877776653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.99  E-value=2.3e-09  Score=112.92  Aligned_cols=291  Identities=14%  Similarity=0.127  Sum_probs=186.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC-cee---eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  490 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  490 (1113)
                      .+.||+..|..++--.+.+.+++++.|++|++|.++.. ..+   ....++..|+.+|.++.|..+.+  +++++  |+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence            47899999999988888899999999999999998742 222   24457889999999999999988  56655  899


Q ss_pred             EEEEeCCCCceeeEee-----ccCcCEEEEeeeecCCceEEEEE-ecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccC
Q 001258          491 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  564 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~  564 (1113)
                      |.+||.--|+++....     +..+.|.++   ++-+...++.| +...+|+++|.+..+-...+.....      --| 
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna------~~P-  875 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA------PGP-  875 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC------CCC-
Confidence            9999988888775332     223445544   33344455555 6789999999987655443321110      011 


Q ss_pred             CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEE
Q 001258          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  644 (1113)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  644 (1113)
                               +..+.+++..+.|++++++-.+|.|.+.|.++|+.+..+..-..  ....++ .|..+.++....|.++.+
T Consensus       876 ---------na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  876 ---------NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             ---------chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence                     12455677777778999999999999999999998876643211  112222 356677888888899988


Q ss_pred             -EEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258          645 -LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  723 (1113)
Q Consensus       645 -wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  723 (1113)
                       |...++ ......+....+..                                  .+.         .-+..+++....
T Consensus       944 nWhaldg-imh~q~kpppepah----------------------------------flq---------svgpSLV~a~~G  979 (1034)
T KOG4190|consen  944 NWHALDG-IMHLQDKPPPEPAH----------------------------------FLQ---------SVGPSLVTAQNG  979 (1034)
T ss_pred             eehhcCC-eeeeccCCCCcchh----------------------------------hhh---------ccCceeEEeccC
Confidence             876666 22222221111111                                  000         113445666555


Q ss_pred             CceeeEeccCC-CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEE
Q 001258          724 DKSKVWKLTEL-SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  777 (1113)
Q Consensus       724 ~~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  777 (1113)
                      ..+.+|.-... ........  +......+..++++.-|-...++++...|.|.+
T Consensus       980 n~lgVYad~a~~ha~stitK--iR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  980 NILGVYADSAELHAESTITK--IRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             cEEEEEecchhhhhhhhhcc--ccccccCCccceeeeccccchhhccCCCCceee
Confidence            66666643211 01111111  111224456777888887777888888887764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.99  E-value=1.9e-07  Score=116.81  Aligned_cols=260  Identities=9%  Similarity=0.051  Sum_probs=162.6

Q ss_pred             EEEEEeCC-CceEEEeecCCeEEEEEccccccCCCCceeeeecC-eecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          755 SRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAP-QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       755 ~~~~~s~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~-~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      ..++++++ ++.+++-..++.|++|+.....       ...... .......|..-.      ..-.....+++++++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-------i~~ig~~g~~G~~dG~~~~------a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-------IVQIGSTGEEGLRDGSFED------ATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-------EEEEccCCCcCCCCCchhc------cccCCCcEEEEeCCCCE
Confidence            46788875 5556666667889988864321       100000 000000111000      12234688999999887


Q ss_pred             EEEEe--CCeEEEEECCCCceeeeecCC-----------------CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          833 VMSAS--GGKISLFNMMTFKTMATFMPP-----------------PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       833 l~~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      |+++.  ++.|+++|..++. +.++.+.                 -.....++|+|+++.++++...++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            77765  5789999987654 3333210                 11346799999667777777788999999987765


Q ss_pred             eeeeecc---------c------ccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcccccc--------cc-ccC--C
Q 001258          894 VKSKLKG---------H------SKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNR--------FL-QIP--T  946 (1113)
Q Consensus       894 ~~~~l~~---------h------~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~--------~~-~~~--~  946 (1113)
                      .. .+.+         +      -...++|+++|+++.| ++-+.++.|++||+.++......        .. ..-  .
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 2211         1      1245679999999854 55566799999999875421000        00 000  0


Q ss_pred             CC--CCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccC-----------CCCCCeeEEEECCCCCEEEE
Q 001258          947 GR--TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPR-----------ESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       947 ~~--~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~-----------~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      +.  .........++++++|..+++ ..++.|++||..++........+           ++-.....++++++|+++++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            00  000123468999999987776 57889999999887665332111           12236788999999998888


Q ss_pred             EeCCCcEEEEecCCCce
Q 001258         1013 CFLDATVCVFSAANLKL 1029 (1113)
Q Consensus      1013 ~~~Dg~v~vwd~~~~~~ 1029 (1113)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88899999999998865

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.97  E-value=2.4e-07  Score=104.95  Aligned_cols=274  Identities=10%  Similarity=0.073  Sum_probs=164.5

Q ss_pred             CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeE
Q 001258          763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKI  841 (1113)
Q Consensus       763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i  841 (1113)
                      +..+++++.++.+..+|..+++.             +|....+..         .   ....+.  ++..+++++ ++.+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~-------------~W~~~~~~~---------~---~~~p~v--~~~~v~v~~~~g~l  117 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKR-------------LWRVDLDER---------L---SGGVGA--DGGLVFVGTEKGEV  117 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcE-------------eeeecCCCC---------c---ccceEE--cCCEEEEEcCCCEE
Confidence            55688888888888877654322             444332211         0   111222  455666665 8999


Q ss_pred             EEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-----EEEEcCCCCE
Q 001258          842 SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-----GLAFSHALNV  916 (1113)
Q Consensus       842 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-----~l~~s~d~~~  916 (1113)
                      ..+|..+++.+....... .+.+.-... + ..++.++.+|.|+.||..+|+.+.++......+.     +...  .+..
T Consensus       118 ~ald~~tG~~~W~~~~~~-~~~~~p~v~-~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~  192 (377)
T TIGR03300       118 IALDAEDGKELWRAKLSS-EVLSPPLVA-N-GLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGG  192 (377)
T ss_pred             EEEECCCCcEeeeeccCc-eeecCCEEE-C-CEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCE
Confidence            999999999877655332 222211111 3 3566678899999999999988776654322111     1111  1346


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC--CCC-ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCC
Q 001258          917 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA--QSD-TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE  993 (1113)
Q Consensus       917 L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~  993 (1113)
                      ++.++.++.+..+|..+++...........+.....  ..+ ....+ .++..++.+.++.+..||..+|+.+...... 
T Consensus       193 v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~-  270 (377)
T TIGR03300       193 VLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS-  270 (377)
T ss_pred             EEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEEeeccC-
Confidence            778888899999999887653322111111100000  000 11111 2444444478899999999999876654321 


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE
Q 001258          994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1073 (1113)
Q Consensus       994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v 1073 (1113)
                         ....+.  .++..+++++.||.|..+|..+++.+.+...   .. +  ....+..+     .+..|++++.||.|++
T Consensus       271 ---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~---~~-~--~~~ssp~i-----~g~~l~~~~~~G~l~~  334 (377)
T TIGR03300       271 ---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE---LK-Y--RQLTAPAV-----VGGYLVVGDFEGYLHW  334 (377)
T ss_pred             ---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc---cc-C--CccccCEE-----ECCEEEEEeCCCEEEE
Confidence               112222  3567788888999999999999988765421   11 1  11111112     2568889999999999


Q ss_pred             EeccCCCccccCC
Q 001258         1074 FEPLESEGKWGVP 1086 (1113)
Q Consensus      1074 W~~~~~~~~~~~~ 1086 (1113)
                      ||..+|+..|..+
T Consensus       335 ~d~~tG~~~~~~~  347 (377)
T TIGR03300       335 LSREDGSFVARLK  347 (377)
T ss_pred             EECCCCCEEEEEE
Confidence            9999999776654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.95  E-value=1.6e-07  Score=104.62  Aligned_cols=112  Identities=12%  Similarity=0.302  Sum_probs=85.1

Q ss_pred             CCcEEEEEcCCCCeEEEEEec----CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          359 SSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      ..-+-..|+|... ++|+++-    .|.|.||- ++|+.....+                 ..-   .+++++|+|..-.
T Consensus        16 avsti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P~---hatSLCWHpe~~v   73 (1416)
T KOG3617|consen   16 AVSTISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YPV---HATSLCWHPEEFV   73 (1416)
T ss_pred             ccccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cce---ehhhhccChHHHH
Confidence            3345567899888 5777764    47888874 5565433211                 111   3567999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      ||.|-.-|.+.+|...+.+.-   .....|..+|.-+.||++|.  .++|+..-|.|.+|...
T Consensus        74 La~gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   74 LAQGWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             HhhccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEee
Confidence            999999999999998875422   24457999999999999999  89999999999999876

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.91  E-value=1.1e-08  Score=111.90  Aligned_cols=304  Identities=13%  Similarity=0.155  Sum_probs=186.4

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-  433 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-  433 (1113)
                      +.-.+.+.++.++|.|+- +|.++.-|. .|-|+...-...+     |            +..-..-.|..+.|||... 
T Consensus        21 l~v~~~~~a~si~p~grd-i~lAsr~gl-~i~dld~p~~ppr-----~------------l~h~tpw~vad~qws~h~a~   81 (1081)
T KOG0309|consen   21 LKVDGGFNAVSINPSGRD-IVLASRQGL-YIIDLDDPFTPPR-----W------------LHHITPWQVADVQWSPHPAK   81 (1081)
T ss_pred             EEecCcccceeeccccch-hhhhhhcCe-EEEeccCCCCCce-----e------------eeccCcchhcceecccCCCC
Confidence            346788999999999996 777776554 3445443211110     0            0111122467788888432 


Q ss_pred             --eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCc
Q 001258          434 --LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA  510 (1113)
Q Consensus       434 --~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~  510 (1113)
                        ++++.+ ...-.+|++.....-.....+.+|...|+.+.|.|.... ++++++.|..+..||+++. .++..+..-..
T Consensus        82 ~~wiVsts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s  159 (1081)
T KOG0309|consen   82 PYWIVSTS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS  159 (1081)
T ss_pred             ceeEEecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence              344444 444668998754433344468899999999999999887 8999999999999999975 45556655555


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      .-..+.|+... + -+...+..+.|++||.+.+.... .+..+...+..+.|..--                    ...+
T Consensus       160 ~asqVkwnyk~-p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~--------------------~s~~  217 (1081)
T KOG0309|consen  160 AASQVKWNYKD-P-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFK--------------------YSEI  217 (1081)
T ss_pred             cCceeeecccC-c-chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhh--------------------hhhh
Confidence            66678887754 3 35555667789999998765543 555555555555554321                    1237


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC-----------CCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-----------GCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      .+.+.|++|++||.............. ...|..-.+.|-           ++.+-.-.-+.....|+..++.+.+..+.
T Consensus       218 ~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~  296 (1081)
T KOG0309|consen  218 MSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV  296 (1081)
T ss_pred             cccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeec
Confidence            888999999999986543222111111 113344444442           22222222233445577777778888899


Q ss_pred             cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ||.+.+....      +...+                         ..+.-.....-.|++-+.|.++++|.+..
T Consensus       297 GH~D~V~eFl------WR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  297 GHDDVVLEFL------WRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CcchHHHHHh------hhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence            9887654210      00000                         00001112345689999999999999874

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=2.1e-08  Score=103.22  Aligned_cols=169  Identities=17%  Similarity=0.140  Sum_probs=114.6

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      .++.+.+++.|+ ++|++..+....+.++......    .+.++.         ..+..-...++.+..+......-.++
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~---------~~v~~~~~ai~~~~~~~sv~v~dkag  129 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDV---------SCVPKRPTAISFIREDTSVLVADKAG  129 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeE---------eecccCcceeeeeeccceEEEEeecC
Confidence            345566777787 6888888888777777654331    111110         01111122344444333232223345


Q ss_pred             CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEEEEeee
Q 001258          440 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPH  518 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~  518 (1113)
                      +...+.+|....+.+.    .+-||-..+++|+|+||++  +++++..|..|+|-....-..+..| -||...|..++..
T Consensus       130 D~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~  203 (390)
T KOG3914|consen  130 DVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT  203 (390)
T ss_pred             CceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeec
Confidence            5566777777665433    3569999999999999999  8999999999999887766666554 5799999999864


Q ss_pred             ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC
Q 001258          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  551 (1113)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  551 (1113)
                      .+   ..|+++|.|++|++||+.+++.+.++..
T Consensus       204 ~~---~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  204 DN---YLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             cC---ceeeecCCCCcEEEEecccCCcccccch
Confidence            32   5799999999999999999888765544

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.89  E-value=1.8e-08  Score=103.66  Aligned_cols=158  Identities=13%  Similarity=0.117  Sum_probs=111.7

Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE----EcCCeEEEEeC
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQLAIFET  980 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~----~~d~~v~v~d~  980 (1113)
                      +..+..++++++||.+..+....++++..... ...+.......    ..-+.+.|..+.....+    +....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34455677788888888777777777665433 11222222111    12344555555444443    34567777877


Q ss_pred             CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC
Q 001258          981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN 1060 (1113)
Q Consensus       981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~ 1060 (1113)
                      ..+.+...+   +|-..++.++|+||+++|+++..|..|+|-.++.-..+..+      +.||..-|..+++.    +++
T Consensus       140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------clGH~eFVS~isl~----~~~  206 (390)
T KOG3914|consen  140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------CLGHKEFVSTISLT----DNY  206 (390)
T ss_pred             cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh------ccccHhheeeeeec----cCc
Confidence            765554443   89999999999999999999999999999988766555433      34899999987665    567


Q ss_pred             EEEEEeCCCcEEEEeccCCC
Q 001258         1061 EFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1061 ~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .|+++|.|++|++||+.+|+
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             eeeecCCCCcEEEEecccCC
Confidence            89999999999999999998

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.86  E-value=1.1e-08  Score=122.66  Aligned_cols=200  Identities=15%  Similarity=0.230  Sum_probs=153.6

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      +..|-..|.++.=+|..-+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            4456678999999999999999999999999999998877654442 33 8999999999999  688888899999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      +. .++....+.|......+.|-.    ..+++++.   ++.+.+||..-....                    ..+...
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence            65 667777888988888877654    35666653   678999986532211                    112233


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                      +.+..+++++.|....+++|+.+|.|++||++..+.++.++.           +. ...++++|+..|.++||++... .
T Consensus      2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred             cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence            344556667777777899999999999999998888776643           33 5678999999999999998766 4


Q ss_pred             ceecc
Q 001258          653 LLRTF  657 (1113)
Q Consensus       653 ~~~~~  657 (1113)
                      .+..+
T Consensus      2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred             hhhcC
Confidence            55444

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.85  E-value=2.6e-08  Score=109.17  Aligned_cols=265  Identities=12%  Similarity=0.161  Sum_probs=172.5

Q ss_pred             eEeccCCC--CcEEEEEcCCC--CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          352 TRTLNQGS--SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       352 ~~~~~h~~--~V~~~~~spdg--~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      .+.+.|-.  .|-.+.|||.-  .+.+++ .....-.||++.......                ..-.+.||+..|+.+.
T Consensus        59 pr~l~h~tpw~vad~qws~h~a~~~wiVs-ts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n  121 (1081)
T KOG0309|consen   59 PRWLHHITPWQVADVQWSPHPAKPYWIVS-TSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDIN  121 (1081)
T ss_pred             ceeeeccCcchhcceecccCCCCceeEEe-cCcchhhhhhhhcCCccc----------------eEEEEecCccceeccc
Confidence            34455533  56778888754  333444 444556688886543322                1225889999999999


Q ss_pred             EcC-CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEe
Q 001258          428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIF  505 (1113)
Q Consensus       428 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~  505 (1113)
                      |.| .-..||+++.|-.|..||+.+...  ++..+..-...-..|+|+....  .+...+..+.|++||.+.| .++..+
T Consensus       122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~  197 (1081)
T KOG0309|consen  122 FNPQHPDVLATCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSL  197 (1081)
T ss_pred             cCCCCCcceeeccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEe
Confidence            999 566899999999999999998653  3334444455678999997776  3666677788999999865 567889


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      ++|...|..+.|+.... ..+.+.+.||+|++||.+......... ....++..-.+.|-|.-.+.          -+..
T Consensus       198 K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~----------mp~~  266 (1081)
T KOG0309|consen  198 KGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCI----------MPMV  266 (1081)
T ss_pred             cccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEe----------cccc
Confidence            99999999998764433 468899999999999998655444322 22335555556565541110          0111


Q ss_pred             CCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECCC----------CCEEEEEECCCcEEEEEcCCC
Q 001258          585 TKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKD----------GCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~----------~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      .++.+..-.-++....|+..+ .+.++.+.+|.  ..|...-|-..          .-.|++-+.|..+++|-+.+.
T Consensus       267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~--D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD--DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             CCeeeeeccccchhhhhccccCCcceeeecCcc--hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence            111111122233444555544 35778887664  34544444332          236999999999999988653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.85  E-value=9e-07  Score=99.68  Aligned_cols=177  Identities=11%  Similarity=0.026  Sum_probs=105.6

Q ss_pred             CCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      +.+..-.|||||+++++..+.   ...|.++|+.+|+...                    +....+.+...+|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            377899999999864444333   3569999998887643                    22234456678899999988


Q ss_pred             EEEe-C--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCceeeEeeccCcC
Q 001258          436 GVAY-S--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       436 as~~-~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      +... .  +..|.++|+.+++..    .+..+........|+|||+.+++++.-.+ ..|.+.|+.+|+..+.... ...
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLT----QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEE----EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            7543 2  356888888887633    23334433455689999997444443222 2688888887776443221 111


Q ss_pred             EEEEeeeecCCceEEEEEecC---------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258          512 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  566 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  566 (1113)
                        ...|+  ++|..|+..+..         ..|.+.|+.++... .+... .......|+|||+
T Consensus       323 --~~~~S--PDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~  380 (419)
T PRK04043        323 --NSSVS--TYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGG  380 (419)
T ss_pred             --CceEC--CCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCC
Confidence              12554  455666655543         25667777665432 22222 1222455666665

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.81  E-value=1.3e-06  Score=86.68  Aligned_cols=207  Identities=16%  Similarity=0.177  Sum_probs=137.5

Q ss_pred             EEEecCCCEEEEEeCCeEEEEECCCC--cee---eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee
Q 001258          824 FALSKNDSYVMSASGGKISLFNMMTF--KTM---ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  898 (1113)
Q Consensus       824 l~~s~~~~~l~~~sdg~i~vwd~~~~--~~~---~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l  898 (1113)
                      ++.+.||+.||+..|..|.|=..++.  ..+   ...+.....=..++||| |+.+||.+...|+|++||+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            67789999999999988888765431  111   22222334568899999 99999999999999999987533 2232


Q ss_pred             cc-------cccCeEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCcccc---ccccccCCCCCCCCCCCceEEEcc
Q 001258          899 KG-------HSKRITGLAFSHAL------NVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       899 ~~-------h~~~V~~l~~s~d~------~~L~s~s~D~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                      ..       -...|.+|.|.+-.      ..|+....+|.++=|-+..+....   ....... .+.+  ..|..+.++|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~-~~yp--~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS-SHYP--HGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEec-ccCC--CceeEEEEcC
Confidence            21       23567777776421      246667778888877764432211   1111211 2222  4789999999


Q ss_pred             CCcEEEEEc----C--------CeEEEEeCCcccee---------------------ecc-----cc-CCCCCCeeEEEE
Q 001258          963 DQIHFLVVH----E--------TQLAIFETTKLECV---------------------KQW-----VP-RESSAPITHATF 1003 (1113)
Q Consensus       963 dg~~l~~~~----d--------~~v~v~d~~~~~~~---------------------~~~-----~~-~~h~~~v~~l~~ 1003 (1113)
                      ..++|+++.    +        -.+..|.+-++...                     +..     .. ......|..|.+
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            988888731    1        14666765332110                     000     00 112567999999


Q ss_pred             CCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258         1004 SCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus      1004 s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      ||||+.||+...+|.|.+|++++.++...+..
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            99999999999999999999999998887763

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.80  E-value=0.00077  Score=78.28  Aligned_cols=578  Identities=12%  Similarity=0.090  Sum_probs=269.5

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEcc-CCceeee---eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      -....+|...+.|..+|.+...-+. +++....   ....-+...-..|+..-++|   ++..||.-|.=.+-.+.+...
T Consensus       263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d  339 (1096)
T KOG1897|consen  263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPD  339 (1096)
T ss_pred             ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCC
Confidence            3455688888888888887766554 4433221   11233555667788888887   588888766655555543222


Q ss_pred             e-------eEeeccCcCEEEEeeeecC--CceEEEEEe---cCCcEEEEEcCCCCCee---eeeCCCCceEEEE--EccC
Q 001258          502 Q-------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNLGSRV---DYEAPGRWCTTMA--YSAD  564 (1113)
Q Consensus       502 ~-------~~~~~h~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~--~s~~  564 (1113)
                      .       .++. .-++|..++.....  ....+++++   .||++++..-.-+-...   .+++ -..+..+.  +.++
T Consensus       340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~  417 (1096)
T KOG1897|consen  340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDEN  417 (1096)
T ss_pred             CCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeecccccc
Confidence            1       2333 34688888765433  334566654   38999988533211111   1222 11222333  1111


Q ss_pred             CC-eEEecccc-----------CceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEEEEccCCCCCCcCe
Q 001258          565 GT-RTYQGFRK-----------RSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPASPR  623 (1113)
Q Consensus       565 ~~-~~~~~~~~-----------~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  623 (1113)
                      -. .++.+...           .......|+.+.+.+++...         ...||+++-.  .....+...   ..++.
T Consensus       418 ~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p---~~~ti  492 (1096)
T KOG1897|consen  418 YDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP---GKITI  492 (1096)
T ss_pred             CCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC---CceEE
Confidence            10 12111111           01111223333444444332         2335555533  122222222   22344


Q ss_pred             EEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc--ccccccCCCCCCCcccchhhhhhhhccccccccccccccc
Q 001258          624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA--YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI  701 (1113)
Q Consensus       624 ~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  701 (1113)
                      ...+.+...++.++.++.+...++..+.  ++....+.  ..+.+.      +|+|.+                      
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~--l~e~~~~~~e~evaCL------Disp~~----------------------  542 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGG--LREVSHKEFEYEVACL------DISPLG----------------------  542 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccc--eeeeeeheecceeEEE------ecccCC----------------------
Confidence            4445555567777776777666666552  11111111  111111      222222                      


Q ss_pred             CCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258          702 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  781 (1113)
Q Consensus       702 ~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~  781 (1113)
                           +..  .....+++|-.+..+.+.-............+  ....-...|--..+-.|..+|+++..||.+.-|-+.
T Consensus       543 -----d~~--~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l--~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d  613 (1096)
T KOG1897|consen  543 -----DAP--NKSRLLAVGLWSDISMILTFLPDLILITHEQL--SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLD  613 (1096)
T ss_pred             -----CCC--CcceEEEEEeecceEEEEEECCCcceeeeecc--CCCccchheeeEEeeccceEEEEEcCCceEEEEEEE
Confidence                 000  01224455544444333222111100000001  111133455666666778899999999998877554


Q ss_pred             ccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC-CCEEEEEeCCeEEEEECCCCceeee-ecCCC
Q 001258          782 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMPPP  859 (1113)
Q Consensus       782 ~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~-~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~  859 (1113)
                      .                    .+|.......... ...++.--.|+.. +..+.+.+|.-.-+|.-.. +.+.+ +.  -
T Consensus       614 ~--------------------~tg~lsd~Kk~~l-Gt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kLv~spls--~  669 (1096)
T KOG1897|consen  614 I--------------------NTGQLSDRKKVTL-GTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KLVYSPLS--L  669 (1096)
T ss_pred             c--------------------ccceEcccccccc-CCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cEEEeccc--h
Confidence            2                    2222111100000 1223333344433 3344455555444444322 22111 11  0


Q ss_pred             CCe-eEEEEecC-CCcEEEEEecCCcEEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCC------------
Q 001258          860 PAA-TFLAFHPQ-DNNIIAIGMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------------  923 (1113)
Q Consensus       860 ~~i-~~l~~s~~-d~~~la~g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------------  923 (1113)
                      ..+ ..+.|+.+ .+..|+++. .+.+.+.-+..-+  .++++.-| .....+++.+....+.+.+..            
T Consensus       670 kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~-~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~  747 (1096)
T KOG1897|consen  670 KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLG-ESPRRICYQESSLTFGVLSNRIESSAEYYGEEY  747 (1096)
T ss_pred             HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCC-CChhheEecccceEEEEEecccccchhhcCCcc
Confidence            001 11122211 123444443 3456665554311  12232222 234556665533333333221            


Q ss_pred             --CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-CcEEEEEc-----------CCeEEEEeCCccceeecc
Q 001258          924 --SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVVH-----------ETQLAIFETTKLECVKQW  989 (1113)
Q Consensus       924 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~~~-----------d~~v~v~d~~~~~~~~~~  989 (1113)
                        ..++++|-++.+.......    ........+.++.|..| +.++++|.           .|.|.+|....+..+...
T Consensus       748 ~~s~l~vlD~nTf~vl~~hef----~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v  823 (1096)
T KOG1897|consen  748 EVSFLRVLDQNTFEVLSSHEF----ERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELV  823 (1096)
T ss_pred             eEEEEEEecCCceeEEeeccc----cccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeee
Confidence              1366777666433221111    11111234556668888 77777742           367888887764433332


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258          990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus       990 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
                      ....-.+.+.++.. -+|++||.  -...|++|++.+.+.++.-.       .|...+..+.+.   ..|+.+++|..-+
T Consensus       824 ~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t~~~eLr~e~-------~~~~~~~aL~l~---v~gdeI~VgDlm~  890 (1096)
T KOG1897|consen  824 AETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWTTERELRIEC-------NISNPIIALDLQ---VKGDEIAVGDLMR  890 (1096)
T ss_pred             eeeeeccceeehhh-hCCeEEEe--cCcEEEEEEccccceehhhh-------cccCCeEEEEEE---ecCcEEEEeeccc
Confidence            21111445555543 26777754  46789999999886654332       555666654444   3688999999999


Q ss_pred             cEEEEeccCCCc-cccCCCCCCCCCCC
Q 001258         1070 GVHVFEPLESEG-KWGVPPPVDNGSTS 1095 (1113)
Q Consensus      1070 ~v~vW~~~~~~~-~~~~~~~~~~~~~~ 1095 (1113)
                      ++.+-.....|+ -....+.|...+++
T Consensus       891 Sitll~y~~~eg~f~evArD~~p~Wmt  917 (1096)
T KOG1897|consen  891 SITLLQYKGDEGNFEEVARDYNPNWMT  917 (1096)
T ss_pred             eEEEEEEeccCCceEEeehhhCcccee
Confidence            988888777663 33444555555443

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.6e-06  Score=97.78  Aligned_cols=190  Identities=9%  Similarity=0.014  Sum_probs=123.4

Q ss_pred             CccEEEEecCCCE-EEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE-EEecC--CcEEEEEccc
Q 001258          820 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDD--SSIQIYNVRV  891 (1113)
Q Consensus       820 ~v~~l~~s~~~~~-l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la-~g~~d--g~v~iwd~~~  891 (1113)
                      ......|+|||+. ++..+ +   ..|.++|+.+++...... ..+......|+| ||+.|+ +.+.+  ..|+++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            5668899999985 66544 3   459999998876654433 445566788999 676555 44434  4688888877


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                      ++. ..+..+........|+|||+.|+..+.. +  .|.+.|+.+++....  .  ..+.       ....|||||++++
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t--~~g~-------~~~~~SPDG~~Ia  334 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--V--FHGK-------NNSSVSTYKNYIV  334 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--c--cCCC-------cCceECCCCCEEE
Confidence            763 4454444434556899999988876643 3  578888887654221  1  1111       1248999999998


Q ss_pred             EE-cC---------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-C--cEEEEecCCC
Q 001258          969 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANL 1027 (1113)
Q Consensus       969 ~~-~d---------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g--~v~vwd~~~~ 1027 (1113)
                      .. ..         ..|.+.|+.++....... .   .......|+|||++|+....+ +  .+.+.+++..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-N---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEECCC-C---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            73 22         368888998887543322 1   233468999999988766543 2  3666666543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.80  E-value=1.3e-06  Score=84.86  Aligned_cols=234  Identities=11%  Similarity=0.021  Sum_probs=155.8

Q ss_pred             CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258          629 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  708 (1113)
Q Consensus       629 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1113)
                      ...+|+.|+..|.+.+|...+.....+....+...+...                                        .
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~----------------------------------------~  122 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV----------------------------------------K  122 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhh----------------------------------------h
Confidence            456899999999999999987744444443333322110                                        0


Q ss_pred             cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258          709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  788 (1113)
Q Consensus       709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  788 (1113)
                      ........+..++.|.++++.++...........       ..-.+.++.+++|++++++.+....|..|.++...... 
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~-------~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~-  194 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHN-------QNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI-  194 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCcccceeec-------cccceeeeEEcCCCceEEEecCCCcceEEEeCCcccee-
Confidence            1111233456777888888888875433322221       11237889999999999999999999999886432211 


Q ss_pred             CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceee-----eecCCCCCe
Q 001258          789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPPAA  862 (1113)
Q Consensus       789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~-----~~~~~~~~i  862 (1113)
                                         +.....  .....-.+..|+.+...+|++. ||++.|||++......     +-..|.+.+
T Consensus       195 -------------------~~~~~a--~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~  253 (344)
T KOG4532|consen  195 -------------------ENIYEA--PTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAF  253 (344)
T ss_pred             -------------------eeeEec--ccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCce
Confidence                               110011  1344456788999999999998 9999999998654332     224578899


Q ss_pred             eEEEEecCCC--cEEEEEecCCcEEEEEcccceeeeeec-------cccc-CeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          863 TFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHSK-RITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       863 ~~l~~s~~d~--~~la~g~~dg~v~iwd~~~~~~~~~l~-------~h~~-~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      ..+.|++ .|  .+|+..-.-+.+.+.|+++++..+.+.       .|.. .|..-.|+.++..+.+.+++. +.-|++.
T Consensus       254 R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~  331 (344)
T KOG4532|consen  254 RVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNIL  331 (344)
T ss_pred             EEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecc
Confidence            9999998 44  466666667799999999876554432       2333 388888988887777776654 6667776


Q ss_pred             C
Q 001258          933 G  933 (1113)
Q Consensus       933 ~  933 (1113)
                      +
T Consensus       332 s  332 (344)
T KOG4532|consen  332 S  332 (344)
T ss_pred             c
Confidence            5

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.74  E-value=8.8e-06  Score=92.47  Aligned_cols=310  Identities=10%  Similarity=0.051  Sum_probs=170.4

Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEeeccC--cCEE-----EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC
Q 001258          481 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  553 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~--~~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  553 (1113)
                      .++.++.++.+.-+|..+|+.+-...-..  ....     .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            36667778889999998998876553221  0000     0000011122467788889999999999988887665443


Q ss_pred             CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCC
Q 001258          554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGC  631 (1113)
Q Consensus       554 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~  631 (1113)
                      ....+..+                       .+..++.+..++.|+.+|..+|+.+............. ..-+|  .+.
T Consensus       151 ~~~ssP~v-----------------------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~-~~~sP~v~~~  206 (394)
T PRK11138        151 EALSRPVV-----------------------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR-GESAPATAFG  206 (394)
T ss_pred             ceecCCEE-----------------------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc-CCCCCEEECC
Confidence            21111111                       02247778889999999999999988876431100000 00122  234


Q ss_pred             EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcccc
Q 001258          632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  711 (1113)
Q Consensus       632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1113)
                      .++.++.+|.+..+|..+|......-.....                +                                
T Consensus       207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~----------------~--------------------------------  238 (394)
T PRK11138        207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPT----------------G--------------------------------  238 (394)
T ss_pred             EEEEEcCCCEEEEEEccCChhhheeccccCC----------------C--------------------------------
Confidence            5677788899998998888432211000000                0                                


Q ss_pred             CCCcceeeccCCCce-eeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCc
Q 001258          712 ADVKPRITEESNDKS-KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  790 (1113)
Q Consensus       712 ~~~~~l~~~~~d~~i-~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~  790 (1113)
                               .  ..+ +++++                  ...++    +  .+..+++++.+|.+..+|..+++      
T Consensus       239 ---------~--~~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------  277 (394)
T PRK11138        239 ---------A--TEIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------  277 (394)
T ss_pred             ---------c--cchhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence                     0  000 00000                  00011    0  12345556666776666654321      


Q ss_pred             eeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEe
Q 001258          791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH  868 (1113)
Q Consensus       791 ~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s  868 (1113)
                             .+|....+.              ...+..  ++..++.++ +|.+..+|..+++.+....... ....+..+.
T Consensus       278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~  334 (394)
T PRK11138        278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY  334 (394)
T ss_pred             -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence                   134322110              111222  344455554 8999999999887765433211 112223332


Q ss_pred             cCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE-EEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          869 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       869 ~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                        + ..|++++.||.|++.|..+|+.+...+-....+.+ ..+  .+..|+.++.||.|+.++.
T Consensus       335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              3 46777899999999999999988776543333332 222  2457888899999888764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.73  E-value=1.2e-05  Score=91.29  Aligned_cols=211  Identities=11%  Similarity=0.034  Sum_probs=121.8

Q ss_pred             CCeEEEEECCCCceeeeecCCCCC-----eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc-------Ce
Q 001258          838 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-------RI  905 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-------~V  905 (1113)
                      ++.|.-+|..+++.+..+......     ..+-...  ++ .++.++.+|.+..+|..+|+.+........       ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence            566777777777666555422111     0111122  22 466677889999999998877654421100       01


Q ss_pred             EEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc
Q 001258          906 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  983 (1113)
Q Consensus       906 ~~l~~s~--d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~  983 (1113)
                      ..+.-+|  .+..++.++.++.+..+|..+++..-...    .+      ....+.. .++..++.+.++.+..+|..+|
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~----~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE----YG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec----CC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            1111122  24567777889999999999876532211    11      1111221 2344444468899999999999


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      +.+-...... .....+..+  .+.+|+.++.||.|.+.|..+|+.+.+......   +  -...++ +.     +..|+
T Consensus       315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~---~--~~s~P~-~~-----~~~l~  380 (394)
T PRK11138        315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSS---G--FLSEPV-VA-----DDKLL  380 (394)
T ss_pred             cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC---c--ceeCCE-EE-----CCEEE
Confidence            8755432111 111222222  255778889999999999999999887652110   1  111221 11     34888


Q ss_pred             EEeCCCcEEEEec
Q 001258         1064 LGLSDGGVHVFEP 1076 (1113)
Q Consensus      1064 s~~~Dg~v~vW~~ 1076 (1113)
                      .++.||.|+.++.
T Consensus       381 v~t~~G~l~~~~~  393 (394)
T PRK11138        381 IQARDGTVYAITR  393 (394)
T ss_pred             EEeCCceEEEEeC
Confidence            8899999998875

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=1.4e-06  Score=97.39  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=61.4

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      .+++++|+|..- +|+.|-.-|.+.+|...+.+.-.                   +...|..+|..+.||++|..|.++.
T Consensus        61 hatSLCWHpe~~-vLa~gwe~g~~~v~~~~~~e~ht-------------------v~~th~a~i~~l~wS~~G~~l~t~d  120 (1416)
T KOG3617|consen   61 HATSLCWHPEEF-VLAQGWEMGVSDVQKTNTTETHT-------------------VVETHPAPIQGLDWSHDGTVLMTLD  120 (1416)
T ss_pred             ehhhhccChHHH-HHhhccccceeEEEecCCceeee-------------------eccCCCCCceeEEecCCCCeEEEcC
Confidence            356799999887 69999999999999987655422                   4567999999999999999999999


Q ss_pred             CCCeEEEEEccC
Q 001258          440 SRHIVQIYSYHG  451 (1113)
Q Consensus       440 ~d~~i~iwd~~~  451 (1113)
                      .-|.|.+|...-
T Consensus       121 ~~g~v~lwr~d~  132 (1416)
T KOG3617|consen  121 NPGSVHLWRYDV  132 (1416)
T ss_pred             CCceeEEEEeee
Confidence            999999998763

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.71  E-value=3.6e-08  Score=104.23  Aligned_cols=221  Identities=14%  Similarity=0.220  Sum_probs=160.0

Q ss_pred             eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCC
Q 001258          852 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  924 (1113)
Q Consensus       852 ~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~  924 (1113)
                      +..+.+|...|..++--. +.+-+++++.|.+|++|.++.       ..+..+...|..+|.++.|-.|.++++++  |+
T Consensus       728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            345778888888887665 667788999999999999874       23556778899999999999998888865  88


Q ss_pred             cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEE--EcCCeEEEEeCCccceeeccccC---CCCCC
Q 001258          925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLV--VHETQLAIFETTKLECVKQWVPR---ESSAP  997 (1113)
Q Consensus       925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~--~~d~~v~v~d~~~~~~~~~~~~~---~h~~~  997 (1113)
                      .|.+||.--++....    +......  +.+..+..-+  +...+++  +.+.+|+++|.+.++.+..|..-   +-+.-
T Consensus       805 giHlWDPFigr~Laq----~~dapk~--~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~  878 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQ----MEDAPKE--GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNAL  878 (1034)
T ss_pred             cceeecccccchhHh----hhcCccc--CCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchh
Confidence            899999766543221    2211111  2334444434  3444444  36789999999999888777642   33567


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEE-Eec
Q 001258          998 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHV-FEP 1076 (1113)
Q Consensus       998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~v-W~~ 1076 (1113)
                      +.+++..+.|..++++-.+|+|.+.|..+|+.+..+++-+.       ....  ++ .|.| +.|+....|.++.| |-.
T Consensus       879 ~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec-------dllq--la-apsd-q~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  879 TRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC-------DLLQ--LA-APSD-QALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             eeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc-------hhhh--hc-Cchh-HHHHhhcccceeEeeehh
Confidence            89999999999999999999999999999999877663221       1111  22 2433 57888888999999 988


Q ss_pred             cCCCccccCCCCCCCC
Q 001258         1077 LESEGKWGVPPPVDNG 1092 (1113)
Q Consensus      1077 ~~~~~~~~~~~~~~~~ 1092 (1113)
                      .+|-+.+...+|.+..
T Consensus       948 ldgimh~q~kpppepa  963 (1034)
T KOG4190|consen  948 LDGIMHLQDKPPPEPA  963 (1034)
T ss_pred             cCCeeeeccCCCCcch
Confidence            8888777776665443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.71  E-value=1.2e-05  Score=80.18  Aligned_cols=228  Identities=12%  Similarity=0.183  Sum_probs=130.5

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1113)
                      |.++.++||+ +||. -.|..|.|=.....-.-.....              .+.+.....=+.++||||+.+||.+...
T Consensus         1 W~~~~~~~Gk-~lAi-~qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAI-LQDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEE-EeccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence            3577889999 4555 4577777766554321111111              1233344456789999999999999999


Q ss_pred             CeEEEEEccCCceeee--eeeee-cccCCeeEEEEcCCC-----CeeEEEEecCCCcEEEEeCCC-----CceeeEee--
Q 001258          442 HIVQIYSYHGGDEVRQ--HLEID-AHVGGVNDIAFSHPN-----KQLCVITCGDDKTIKVWDATN-----GAKQYIFE--  506 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~--~~~l~-~h~~~V~~v~~s~~~-----~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~--  506 (1113)
                      |+|+++|+.+......  ...+. .-...|..+.|.+..     .. -|+.-..+|.++=+-+..     .+..+++.  
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~  143 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFS  143 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEec
Confidence            9999999987543311  00011 123467777776543     11 244555677777666532     23334443  


Q ss_pred             -ccCcCEEEEeeeecCCceEEEEEec-CCc----------EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          507 -GHEAPVYSVCPHHKENIQFIFSTAL-DGK----------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       507 -~h~~~v~~~~~~~~~~~~~l~s~~~-dg~----------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                       .+...|.++++++..  ++|+.||. ...          +..|.+-++.+-..                          
T Consensus       144 ~~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk--------------------------  195 (282)
T PF15492_consen  144 SHYPHGINSAVYHPKH--RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK--------------------------  195 (282)
T ss_pred             ccCCCceeEEEEcCCC--CEEEEeccCCCCCccccccccCceEEEEcCCCCcEE--------------------------
Confidence             246789999988765  45555543 221          22332222111110                          


Q ss_pred             CceeEEEecCCCCEEEEEecCC------cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDF------SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                                    .+....|+      +..+|.+-+.+.....  ......|..+..||||..||+...+|.|.+|++.
T Consensus       196 --------------~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~--~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  196 --------------QVTSSEDDITASSKRRGLLRIPSFKFFSRQ--GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             --------------EccccCccccccccccceeeccceeeeecc--ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence                          11111111      1223333322222111  1224578999999999999999999999999997


Q ss_pred             CC
Q 001258          649 DG  650 (1113)
Q Consensus       649 ~~  650 (1113)
                      +-
T Consensus       260 sL  261 (282)
T PF15492_consen  260 SL  261 (282)
T ss_pred             cc
Confidence            76

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.70  E-value=8.8e-06  Score=83.86  Aligned_cols=182  Identities=13%  Similarity=0.154  Sum_probs=127.0

Q ss_pred             EEEEecCCCEEEEEe------CCeEEEEECC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEe----------------
Q 001258          823 CFALSKNDSYVMSAS------GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------------  879 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~----------------  879 (1113)
                      .-+||+||++|++.-      .|.|-|||.. +.+.+.++..+.-....+.+.| |++.|+++-                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            368999999999884      3779999998 6777888888777778889999 786666652                


Q ss_pred             --cCCcEEEEEcccceeeee--e--cccccCeEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCccccccccccCC
Q 001258          880 --DDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADSQ-------LCVWSSDGWEKQKNRFLQIPT  946 (1113)
Q Consensus       880 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~~L~s~s~D~~-------v~iwd~~~~~~~~~~~~~~~~  946 (1113)
                        .+-.+...|..+|+++.+  +  .-|...|..|++.++|..++..-..+.       |-+++-..  ..  .......
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~--~~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--AL--RLLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cc--eeccCCh
Confidence              122455667788888876  4  348889999999999877665533331       33443322  11  1111111


Q ss_pred             CC-CCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258          947 GR-TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       947 ~~-~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      .. ....+.+-+++++++|.+++++  .-+.+.+||..++..+....    -..+..++-.+++ ++++.+
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~----l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP----LPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc----cCceeeeeecCCc-eEEeCC
Confidence            00 0111467899999999998874  56789999999999988765    4567778877777 666554

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.69  E-value=5.4e-06  Score=87.28  Aligned_cols=224  Identities=14%  Similarity=0.121  Sum_probs=138.5

Q ss_pred             CCeEEEEECCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC
Q 001258          838 GGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  915 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  915 (1113)
                      +|+|..||..+++.+.......  ....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            5889999999999887775321  22222233 2 345677778999999999999998877664 22221111 22455


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCC
Q 001258          916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES  994 (1113)
Q Consensus       916 ~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h  994 (1113)
                      .++.++.|+.|+.+|..+++.............    ..........++..+++ ..++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            667777888999999999876433111111110    01122233333666666 4699999999999999877654221


Q ss_pred             C--C------CeeEEEECCCCCEEEEEeCCCc-EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          995 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       995 ~--~------~v~~l~~s~dg~~l~s~~~Dg~-v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      .  .      .+..-.+..++ .++.++.++. +.+ |+.+++.+....     . +   .+.   ..... ++..|+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~-~---~~~---~~~~~-~~~~l~~~  218 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----I-S---GIY---SLPSV-DGGTLYVT  218 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----S-S----EC---ECEEC-CCTEEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----C-C---Ccc---CCcee-eCCEEEEE
Confidence            1  1      11222233345 7777777885 555 999998663221     0 1   111   11223 46788877


Q ss_pred             eCCCcEEEEeccCCCcccc
Q 001258         1066 LSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus      1066 ~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
                      +.|+.|..||+++|+..|.
T Consensus       219 ~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  219 SSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             ETTTEEEEEETTTTEEEEE
T ss_pred             eCCCEEEEEECCCCCEEeE
Confidence            7999999999999998774

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.63  E-value=6.2e-06  Score=80.24  Aligned_cols=220  Identities=12%  Similarity=0.035  Sum_probs=135.9

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG  451 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~  451 (1113)
                      +||.|+..|...+|...+.+....                  ....|...|+-+.=.- ...-+..++.|.++++.+++.
T Consensus        86 ~la~gG~~g~fd~~~~~tn~~h~~------------------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~  147 (344)
T KOG4532|consen   86 TLADGGASGQFDLFACNTNDGHLY------------------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSG  147 (344)
T ss_pred             EEEeccccceeeeecccCccccee------------------eecccccchhhhhhhcccccceeeccCCcceeEEEEec
Confidence            489999999999999987654331                  1122222222111111 223466788999999999886


Q ss_pred             CceeeeeeeeecccC--CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-cee-e-EeeccCcCEEEEeeeecCCceEE
Q 001258          452 GDEVRQHLEIDAHVG--GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQ-Y-IFEGHEAPVYSVCPHHKENIQFI  526 (1113)
Q Consensus       452 ~~~~~~~~~l~~h~~--~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~-~-~~~~h~~~v~~~~~~~~~~~~~l  526 (1113)
                      +....     .-|..  .+.+++.++|++  ++++.++...|..|.+... +.+ + ......+.-.+..|+  .+...+
T Consensus       148 ~s~~~-----~~h~~~~~~ns~~~snd~~--~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s--~~~~~F  218 (344)
T KOG4532|consen  148 DSNKF-----AVHNQNLTQNSLHYSNDPS--WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS--ENDLQF  218 (344)
T ss_pred             Ccccc-----eeeccccceeeeEEcCCCc--eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeec--cCcceE
Confidence            54322     22433  388999999999  7889998899999988753 322 2 122223333444554  444789


Q ss_pred             EEEecCCcEEEEEcCCCCCeee-----eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEE
Q 001258          527 FSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW  601 (1113)
Q Consensus       527 ~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iw  601 (1113)
                      +++..||++.+||++.......     .+.|.+.+..+.|++-|..                   ..|+..-.-+.+.+.
T Consensus       219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l-------------------DLLf~sEhfs~~hv~  279 (344)
T KOG4532|consen  219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL-------------------DLLFISEHFSRVHVV  279 (344)
T ss_pred             EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc-------------------eEEEEecCcceEEEE
Confidence            9999999999999997654432     2334555666666554431                   134444456788999


Q ss_pred             ECCCCceEEEEccCCC------CCCcCeEEECCCCCEEEEEEC
Q 001258          602 DMDSVQLLTSIDADGG------LPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       602 d~~~~~~~~~~~~~~~------~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                      |+++++..+.+.....      ...+..-.|+.++.-+.+.+.
T Consensus       280 D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  280 DTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             EcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            9999876655532211      123555666665555544443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.63  E-value=2.7e-05  Score=80.36  Aligned_cols=241  Identities=16%  Similarity=0.184  Sum_probs=148.1

Q ss_pred             CcEEEEEcCCCCeEEEEEecCC-cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +.-.++.+|+....++.+-.-| ...+||..+++......           .-....|.||      -.||+||++|.+.
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytT   68 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTT   68 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEe
Confidence            4456788896666677777665 47799999998776411           1122246677      5899999999987


Q ss_pred             e-----CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC----------------CCcEEEEeCC
Q 001258          439 Y-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDAT  497 (1113)
Q Consensus       439 ~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~----------------d~~i~iwd~~  497 (1113)
                      =     ..|.|-|||...+  ++.+.++..|.-.-..+.+.|||+.++++-|+-                +-++.+-|..
T Consensus        69 End~~~g~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~  146 (305)
T PF07433_consen   69 ENDYETGRGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR  146 (305)
T ss_pred             ccccCCCcEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC
Confidence            3     3588999999932  344447777777788899999998655554432                3456677778


Q ss_pred             CCceeeE--e--eccCcCEEEEeeeecCCceEEEEEecCCc-------EEEEEcCCCCCeeeeeCCCCceEEEEEccCCC
Q 001258          498 NGAKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGK-------IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  566 (1113)
Q Consensus       498 ~~~~~~~--~--~~h~~~v~~~~~~~~~~~~~l~s~~~dg~-------i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~  566 (1113)
                      +|+.+..  +  .-|...|.-+++..  +|..++..-..|.       |-+++..  +....+          ...++. 
T Consensus       147 sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~----------~~p~~~-  211 (305)
T PF07433_consen  147 SGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLL----------PAPEEQ-  211 (305)
T ss_pred             CCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCC--Ccceec----------cCChHH-
Confidence            8887765  4  33777888888654  3333333222221       2222111  111111          110000 


Q ss_pred             eEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258          567 RTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  643 (1113)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  643 (1113)
                         ...-.+.+..++++.++.++++. -..+.+.+||..+++.+......    .+..++-.+++ ++++.+ .|.+.
T Consensus       212 ---~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~  280 (305)
T PF07433_consen  212 ---WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLI  280 (305)
T ss_pred             ---HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEE
Confidence               00112345566666666666554 47889999999999998877643    45666766666 555444 35543

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.3e-06  Score=89.21  Aligned_cols=213  Identities=13%  Similarity=0.062  Sum_probs=143.4

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeC
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA  496 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~  496 (1113)
                      .|.+.|+.+..+ -.+++.+++.||.++.|.-..-.-+.-...+..|.+.|.+++.+-++.  ++.|.+. |..++++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence            477888887665 567999999999999998665333444446778999999999999998  7889777 999999999


Q ss_pred             CCCceeeEeec--cCcCEEEEeeeecCC-c--eEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEE
Q 001258          497 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       497 ~~~~~~~~~~~--h~~~v~~~~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      ++-..+..++-  -.+.+   +|...+. -  .+-++.-.+|.+.++|-....+..  .-..|..+|..+.+.+      
T Consensus        84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q------  154 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ------  154 (558)
T ss_pred             eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec------
Confidence            87655433321  12222   2222221 1  122333457889999876544332  2233444555554444      


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECCC------CceEEEEc-------cCCCCCCcCeEEECCCCCEEEEE
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                                     .+..+++....|.|.-|....      .+....++       .........++.|+|++..+.+-
T Consensus       155 ---------------a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl  219 (558)
T KOG0882|consen  155 ---------------AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL  219 (558)
T ss_pred             ---------------cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence                           444678888899999998863      11111111       11223456899999999999999


Q ss_pred             ECCCcEEEEEcCCCccceeccc
Q 001258          637 TNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       637 ~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      ..|..|++++..++ ...+.++
T Consensus       220 ~~DrkVR~F~~KtG-klvqeiD  240 (558)
T KOG0882|consen  220 NPDRKVRGFVFKTG-KLVQEID  240 (558)
T ss_pred             CcccEEEEEEeccc-hhhhhhh
Confidence            99999999999998 5665554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.59  E-value=2.2e-07  Score=93.35  Aligned_cols=166  Identities=13%  Similarity=0.061  Sum_probs=124.0

Q ss_pred             EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1113)
Q Consensus       364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1113)
                      ++||-+-.-.-++.+.+-.|-+-|+++|-...                    +. ..+.|.++.|...+.++..|..+|.
T Consensus       217 CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRnge  275 (425)
T KOG2695|consen  217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGE  275 (425)
T ss_pred             hhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCc
Confidence            36664322112334456778899999886542                    22 4568999999998999999999999


Q ss_pred             EEEEEccCCce--eeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCce---eeEeeccCcCEEEEee
Q 001258          444 VQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCP  517 (1113)
Q Consensus       444 i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~v~~~~~  517 (1113)
                      |.+.|++.+..  ..+. ..--|...|+++.... +++  +|++.+.+|+|++||++.-++   +..+.||...-.-+-+
T Consensus       276 I~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~  352 (425)
T KOG2695|consen  276 IFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPA  352 (425)
T ss_pred             EEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccccc
Confidence            99999986511  1111 1225899999998877 455  799999999999999987666   8899999877666666


Q ss_pred             eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC
Q 001258          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  553 (1113)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  553 (1113)
                      +..+....+++++.|...+||.++.+....+++.+.
T Consensus       353 ~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  353 HVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            666666789999999999999999887777665543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.54  E-value=1.1e-06  Score=86.86  Aligned_cols=307  Identities=13%  Similarity=0.126  Sum_probs=167.1

Q ss_pred             ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-----eeeEeeccCc------------CEEEEeeeecCCceEE
Q 001258          464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHEA------------PVYSVCPHHKENIQFI  526 (1113)
Q Consensus       464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-----~~~~~~~h~~------------~v~~~~~~~~~~~~~l  526 (1113)
                      ..+.|++|.|...|.  ++++|...|.|.++.-....     ....|++|..            .|..+.|........+
T Consensus        25 ead~ItaVefd~tg~--YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF  102 (460)
T COG5170          25 EADKITAVEFDETGL--YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF  102 (460)
T ss_pred             ccceeeEEEeccccc--eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence            345799999999998  89999999999999754322     1224566643            4667777655555677


Q ss_pred             EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC
Q 001258          527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV  606 (1113)
Q Consensus       527 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  606 (1113)
                      +..+.|++|++|.+.........  ...--.++.+...|. +....   .+..-..+.         .|..|...-    
T Consensus       103 LlstNdktiKlWKiyeknlk~va--~nnls~~~~~~~~g~-~~s~~---~l~lprls~---------hd~iiaa~p----  163 (460)
T COG5170         103 LLSTNDKTIKLWKIYEKNLKVVA--ENNLSDSFHSPMGGP-LTSTK---ELLLPRLSE---------HDEIIAAKP----  163 (460)
T ss_pred             EEecCCceeeeeeeecccchhhh--ccccccccccccCCC-cCCHH---Hhhcccccc---------cceEEEecc----
Confidence            77889999999988754322211  111111111111111 00000   000000000         011111100    


Q ss_pred             ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhh
Q 001258          607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  686 (1113)
Q Consensus       607 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1113)
                         ..+....|...+++++|+.|...++++. |=.|.+|++.-..                                   
T Consensus       164 ---~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D-----------------------------------  204 (460)
T COG5170         164 ---CRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID-----------------------------------  204 (460)
T ss_pred             ---ceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-----------------------------------
Confidence               0111122344688999999988887754 5688899865321                                   


Q ss_pred             cccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCce-
Q 001258          687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA-  765 (1113)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~-  765 (1113)
                                                           +...+-|+..    .....       -..-|++..|+|.... 
T Consensus       205 -------------------------------------~sFnIVDiKP----~nmee-------LteVItSaeFhp~~cn~  236 (460)
T COG5170         205 -------------------------------------GSFNIVDIKP----HNMEE-------LTEVITSAEFHPEMCNV  236 (460)
T ss_pred             -------------------------------------CceEEEeccC----ccHHH-------HHHHHhhcccCHhHcce
Confidence                                                 1112222221    00000       1234567777776543 


Q ss_pred             EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCC-CccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEE
Q 001258          766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP-SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF  844 (1113)
Q Consensus       766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~-~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw  844 (1113)
                      +.-.++.|.|++-|+.....-....       +++... .|.-.. .+.+  -...|..+.|+++|+++++-+--++++|
T Consensus       237 fmYSsSkG~Ikl~DlRq~alcdn~~-------klfe~~~D~v~~~-ff~e--ivsSISD~kFs~ngryIlsRdyltvkiw  306 (460)
T COG5170         237 FMYSSSKGEIKLNDLRQSALCDNSK-------KLFELTIDGVDVD-FFEE--IVSSISDFKFSDNGRYILSRDYLTVKIW  306 (460)
T ss_pred             EEEecCCCcEEehhhhhhhhccCch-------hhhhhccCcccch-hHHH--HhhhhcceEEcCCCcEEEEeccceEEEE
Confidence            4455566899998876432111110       111100 110000 0111  2456888999999999999888999999


Q ss_pred             ECCC-CceeeeecCCC------------CCe---eEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          845 NMMT-FKTMATFMPPP------------PAA---TFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       845 d~~~-~~~~~~~~~~~------------~~i---~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                      |... ..++.++.-|.            ..|   ..+.||. |.+.+.+|+.....-||-.
T Consensus       307 Dvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         307 DVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             ecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecC-Ccccccccccccceeeecc
Confidence            9874 45566664442            112   3467787 6677888887777777753

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.54  E-value=0.0006  Score=66.61  Aligned_cols=147  Identities=9%  Similarity=0.016  Sum_probs=95.7

Q ss_pred             EEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee
Q 001258          471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  550 (1113)
Q Consensus       471 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  550 (1113)
                      +...+|.+. +++.||..+.+.--|..+|+.+..-. -...|.+-+..- +  ++++.|...|.+.+-+..++.....+.
T Consensus        16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~vv-g--dfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIVV-G--DFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEEE-C--CEEEEEEccCcEEEEEecchhheeeee
Confidence            334455555 78888888889899999988765322 223444433321 2  579999999999999999987776554


Q ss_pred             CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC
Q 001258          551 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  630 (1113)
Q Consensus       551 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  630 (1113)
                      ..+.--..                     ...++++..+.+|+.|+..+..|..+..++...+..+.  ...+-+..|..
T Consensus        91 ~~~~vk~~---------------------a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~  147 (354)
T KOG4649|consen   91 ILETVKVR---------------------AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD  147 (354)
T ss_pred             ehhhhccc---------------------eEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence            33221111                     22345556799999999999999999999988776544  23344556633


Q ss_pred             CEEEEEECCCcEEEE
Q 001258          631 CLLAVSTNDNGIKIL  645 (1113)
Q Consensus       631 ~~l~~~~~dg~i~iw  645 (1113)
                      ..|..+...|.+.--
T Consensus       148 ~sly~a~t~G~vlav  162 (354)
T KOG4649|consen  148 GSLYAAITAGAVLAV  162 (354)
T ss_pred             ceEEEEeccceEEEE
Confidence            344444444554433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.52  E-value=1.3e-06  Score=86.26  Aligned_cols=227  Identities=15%  Similarity=0.208  Sum_probs=140.6

Q ss_pred             CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeeeeecccC------------CeeEEEEcCCCCeeEEEE
Q 001258          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVG------------GVNDIAFSHPNKQLCVIT  484 (1113)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~------------~V~~v~~s~~~~~~~l~s  484 (1113)
                      ..+.|+++.|...|.||++|...|.|.+|.-....  ..+-+..+++|..            .|..+.|..++....++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            34579999999999999999999999999765432  1222334556643            478899987766556777


Q ss_pred             ecCCCcEEEEeCCCCc-------------------ee-----------------------eEe-eccCcCEEEEeeeecC
Q 001258          485 CGDDKTIKVWDATNGA-------------------KQ-----------------------YIF-EGHEAPVYSVCPHHKE  521 (1113)
Q Consensus       485 ~s~d~~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~~v~~~~~~~~~  521 (1113)
                      .+.|++|++|.+....                   ++                       +.. ..|.-.|.++.++.  
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns--  182 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS--  182 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence            7889999999875431                   00                       001 24555667777643  


Q ss_pred             CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecCCcEEE
Q 001258          522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKF  600 (1113)
Q Consensus       522 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i  600 (1113)
                      |...+++ +.|-.|.+|+++-......+         +.+-|..-    ..-...|....|+|.. +.+.-.+..|.|++
T Consensus       183 D~et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm----eeLteVItSaeFhp~~cn~fmYSsSkG~Ikl  248 (460)
T COG5170         183 DKETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM----EELTEVITSAEFHPEMCNVFMYSSSKGEIKL  248 (460)
T ss_pred             chheeee-ccceeeeeccccccCCceEE---------EeccCccH----HHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence            3345554 45778999988754433221         11111110    0000123333444433 23555677899999


Q ss_pred             EECCCCceE------EE--EccC------CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccc
Q 001258          601 WDMDSVQLL------TS--IDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       601 wd~~~~~~~------~~--~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                      -|++...+.      ..  +.+.      +-...|..+.|+++|+++++-+. -+++|||......+++++.-|..
T Consensus       249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~  323 (460)
T COG5170         249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCD  323 (460)
T ss_pred             hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHH
Confidence            998743211      11  1100      11245778999999999988765 68999999888777777655443

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.51  E-value=0.00034  Score=73.76  Aligned_cols=223  Identities=20%  Similarity=0.219  Sum_probs=139.4

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc-CCCCeEEEEeC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS  440 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~  440 (1113)
                      .+.+|.+....|+++....+.|..|+..+++....                    ...  ....+++. ++|++++ +..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g~l~v-~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDGRLYV-ADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTSEEEE-EET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCCEEEE-EEc
Confidence            36789984444788877889999999988765431                    111  26677777 6655544 444


Q ss_pred             CCeEEEEEccCCceeeeeeeee--c-ccCCeeEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCceeeEeeccC
Q 001258          441 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      ++ +.++|..+++.. .+....  . .....+.+++.++|.  +.++....        +.|..++.. ++...... .-
T Consensus        60 ~~-~~~~d~~~g~~~-~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKVT-VLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEEE-EEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcEE-EEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            44 566699888643 333332  2 345789999999999  55655433        457777765 45433333 45


Q ss_pred             cCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCee----ee-eCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          510 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRV----DY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~----~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      ...+.++|+++  ++.| ++-+..+.|..+++.......    .+ ......                   +....++++
T Consensus       134 ~~pNGi~~s~d--g~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------------------g~pDG~~vD  192 (246)
T PF08450_consen  134 GFPNGIAFSPD--GKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP-------------------GYPDGLAVD  192 (246)
T ss_dssp             SSEEEEEEETT--SSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-------------------CEEEEEEEB
T ss_pred             ccccceEECCc--chheeecccccceeEEEeccccccceeeeeeEEEcCCCC-------------------cCCCcceEc
Confidence            56788898764  4444 566778889999887544311    11 111110                   123445666


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEE
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST  637 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~  637 (1113)
                      .+|+..++....+.|.+++.+ |+.+..+....  ..+++++| .++.+.|++.+
T Consensus       193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             TTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--SSEEEEEEESTTSSEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--CCEEEEEEECCCCCEEEEEe
Confidence            666677777789999999987 88888887662  36889999 46766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.50  E-value=0.00013  Score=76.98  Aligned_cols=218  Identities=13%  Similarity=0.052  Sum_probs=135.1

Q ss_pred             cEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          822 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       822 ~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .+++|.+ ++.++++-. .+.|..|+..+++... +....  ...+++...++.+++ +.. +.+.++|..+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~-~~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADS-GGIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EET-TCEEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEc-CceEEEecCCCcEEEEee
Confidence            3578888 555555543 7899999998876543 22122  778888832665554 444 455666988875443332


Q ss_pred             c-----cccCeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          900 G-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       900 ~-----h~~~V~~l~~s~d~~~L~s~s~D--------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                      .     .....+.+++.++|++.++....        +.|..++.. ++..  ......       .....++|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~--~~~~~~-------~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT--VVADGL-------GFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE--EEEEEE-------SSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEE--EEecCc-------ccccceEECCcchh
Confidence            2     34568899999999988876654        446666665 2211  111111       13478999999998


Q ss_pred             EEEE--cCCeEEEEeCCccce----eecc-ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCccc
Q 001258          967 FLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL 1039 (1113)
Q Consensus       967 l~~~--~d~~v~v~d~~~~~~----~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~ 1039 (1113)
                      |+++  ..+.|..|++.....    ...+ ....-.+..-.+++..+|.+.++....+.|.+++.+ |+++..+..+.  
T Consensus       148 lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~--  224 (246)
T PF08450_consen  148 LYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV--  224 (246)
T ss_dssp             EEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS--
T ss_pred             eeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC--
Confidence            8763  667888888853221    1112 111112347889999999988888889999999987 88888776221  


Q ss_pred             CCCcccCccceEEEEeCCCCCEEEE
Q 001258         1040 PAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus      1040 ~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                           ..+  ..++|-..+.+.|..
T Consensus       225 -----~~~--t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  225 -----PRP--TNCAFGGPDGKTLYV  242 (246)
T ss_dssp             -----SSE--EEEEEESTTSSEEEE
T ss_pred             -----CCE--EEEEEECCCCCEEEE
Confidence                 123  358885335455443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=1.2e-06  Score=91.16  Aligned_cols=213  Identities=13%  Similarity=0.086  Sum_probs=151.3

Q ss_pred             CCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCC
Q 001258          858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  933 (1113)
Q Consensus       858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~  933 (1113)
                      |...|+.+..+.  .+++.+++-||.++.|.-..   -+.+..+..|-+.|.+++.+.|+.++.|.+. |..++++|+.+
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            666677776664  57999999999999997543   2445667889999999999999999999887 99999999988


Q ss_pred             CccccccccccCCCCCCCCCCCceEEEccCC-c-EEEEE--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE
Q 001258          934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ-I-HFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1113)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg-~-~l~~~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1113)
                      .......-+..+.+       -..+..++.. . .++++  .++.+.++|-....|.......-|..+|.++.+.+-+..
T Consensus        86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            55432222222211       1122223321 1 44443  778999999877665555555578999999999999999


Q ss_pred             EEEEeCCCcEEEEecCC------CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1010 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1010 l~s~~~Dg~v~vwd~~~------~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +++....|.|.-|..+.      .++...+.....+-.-.-..-.+.++.|+| +|..+.+-+.|..|+++++.+|+
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            99999999999999873      222222222222111112223344688999 78999999999999999999998

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.49  E-value=4.5e-06  Score=80.91  Aligned_cols=95  Identities=22%  Similarity=0.325  Sum_probs=72.1

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee-eeeecccccCeEEEEEcC-CCCE
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSH-ALNV  916 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~-d~~~  916 (1113)
                      +..+.|+++..+.+..-......|++++-+|.-.+++++|+.||.+-+||.+.... ...+..|..+|+.+-|+| ++..
T Consensus       159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~  238 (319)
T KOG4714|consen  159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH  238 (319)
T ss_pred             cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence            34555665533322221222234899999997778999999999999999987643 355688999999999997 5688


Q ss_pred             EEEEeCCCcEEEEeCCC
Q 001258          917 LVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       917 L~s~s~D~~v~iwd~~~  933 (1113)
                      |+++++||.+..||-.+
T Consensus       239 Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  239 LFTCSEDGSLWHWDAST  255 (319)
T ss_pred             eeEecCCCcEEEEcCCC
Confidence            99999999999999876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.49  E-value=1.6e-06  Score=83.87  Aligned_cols=210  Identities=12%  Similarity=0.160  Sum_probs=124.1

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  440 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  440 (1113)
                      |+.+.|+-+-  .|+++..++.+......++.+...     |+-.....  +...+..|+++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence            6777777665  488888888887777665544331     11111111  11123345555455555556888999999


Q ss_pred             CCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEec-----CCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          441 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-----DDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      ||.+.+++.+.-..+.  ..+. .|.+ -.+.+....+.  ++.+++     .-+..++|+++-.+.+..-..-...|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622111  1111 1221 12233333444  233322     1234556665533322211122334899


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      +|-+|... +++++|+.||.+-+||.+...-.. .+..|...+..+-|.|...                    ..|++++
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s  243 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS  243 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence            99888765 688999999999999999764332 3455666666666666432                    4589999


Q ss_pred             cCCcEEEEECCC
Q 001258          594 DDFSIKFWDMDS  605 (1113)
Q Consensus       594 ~dg~i~iwd~~~  605 (1113)
                      +||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999764

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.46  E-value=6.6e-07  Score=85.09  Aligned_cols=134  Identities=22%  Similarity=0.219  Sum_probs=99.4

Q ss_pred             HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHH
Q 001258           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQ  117 (1113)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~  117 (1113)
                      ...++++|++|+++.|++.+......-. +....+.|.|++|+|+|||..++..+|+.+.|+.+.|......+.++.+..
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~   83 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS   83 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5789999999999999999998732211 111248999999999999999999999999999997665445677888888


Q ss_pred             Hhccccccc--chhhccCCCChhHHHHHHHHHHhhccCCCCcccccCCCCCc-hhHHHHHHHHHHHHH
Q 001258          118 LLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ  182 (1113)
Q Consensus       118 l~~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q  182 (1113)
                      +|.......  ...+...-+. ..|++|++.+.+.+-...-         +| .+.|..++++....+
T Consensus        84 lL~~~~~~~~~~s~~~~l~~~-~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   84 LLAYPDPEEPLPSPYKELLSP-ERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHcCCcccccchHHHHHhCh-HHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            887776654  3344333233 7789999999887754332         33 467888888876554

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.46  E-value=3.1e-05  Score=81.48  Aligned_cols=229  Identities=15%  Similarity=0.087  Sum_probs=136.1

Q ss_pred             CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeee
Q 001258          380 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL  459 (1113)
Q Consensus       380 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~  459 (1113)
                      +|+|..||..+|+.+-...+.                .+.. ...+. ..+++.++.+++.++.|..||..+|+.+... 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~~-~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-   62 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG----------------PGIG-GPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF-   62 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS----------------SSCS-SEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred             CCEEEEEECCCCCEEEEEECC----------------CCCC-Cccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence            688999999999887643210                0111 12211 2236777888889999999999999876533 


Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCc---CEEEEeeeecCCceEEEEEecCCcE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEA---PVYSVCPHHKENIQFIFSTALDGKI  535 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1113)
                        .. .+.+.......++.   ++.++.++.++.+|..+|+.+... .....   ..........  +..++.+..++.|
T Consensus        63 --~~-~~~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l  134 (238)
T PF13360_consen   63 --DL-PGPISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL  134 (238)
T ss_dssp             --EC-SSCGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred             --ec-cccccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence              22 22222212333343   555557889999999999998874 32211   1111221122  3578888889999


Q ss_pred             EEEEcCCCCCeeeeeCCCCce-EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258          536 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       536 ~iwd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                      ..+|.++++.+.......... ..+....            ....-....++ .++.++.++.+..+|+.+++.+.... 
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-  200 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFS------------DINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-  200 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEET------------TEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeec------------ccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence            999999988877765533221 0000000            00011111122 57777777764444999998664333 


Q ss_pred             CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          615 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       615 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                      ..   .+.. ....++..|++++.++.+..||+.+++..
T Consensus       201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~  235 (238)
T PF13360_consen  201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVV  235 (238)
T ss_dssp             SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred             CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence            11   2222 14567788888889999999999999543

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.44  E-value=8.2e-05  Score=84.09  Aligned_cols=185  Identities=12%  Similarity=0.051  Sum_probs=117.7

Q ss_pred             EecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----cEEEEEcccceeeeeec
Q 001258          826 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       826 ~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iwd~~~~~~~~~l~  899 (1113)
                      +++||+.+...+  .+.+.+.|.++.+...++.-. .....+++++ +++++++.+.+.    .+..-+..+...+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            456887765544  578889999988777665532 2456789999 888888776322    22222221111111111


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEE
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA  976 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~  976 (1113)
                      -  ..+  -++.++|++...  .++.|.+.|..+..... .....++.+.     ....+.+||||++++++  .+.++.
T Consensus       278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK-----sPHGV~vSPDGkylyVanklS~tVS  346 (635)
T PRK02888        278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK-----NPHGVNTSPDGKYFIANGKLSPTVT  346 (635)
T ss_pred             h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC-----CccceEECCCCCEEEEeCCCCCcEE
Confidence            0  000  133457877665  36789999988711000 1122233333     45889999999999994  678999


Q ss_pred             EEeCCccce------------eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          977 IFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       977 v~d~~~~~~------------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      |+|+.+.+.            +.+...   .......+|+++|....+-..|..|..|++.+
T Consensus       347 VIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        347 VIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             EEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999988663            333322   34556789999999888899999999999986

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.44  E-value=9.4e-07  Score=88.92  Aligned_cols=154  Identities=16%  Similarity=0.170  Sum_probs=112.3

Q ss_pred             EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-----eeeeeecccccCeE
Q 001258          832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT  906 (1113)
Q Consensus       832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~~h~~~V~  906 (1113)
                      .+++|.+-.+-+-|++++-. +.|. ..+.|.++.|.. .+.++..|+.+|.|..+|++.+     .+...+ .|.+.|+
T Consensus       227 hfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvt  302 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVT  302 (425)
T ss_pred             eecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchh
Confidence            34556678899999988643 3344 567799999987 6889999999999999999864     333444 3889999


Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccce
Q 001258          907 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  985 (1113)
Q Consensus       907 ~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~  985 (1113)
                      ++..-. ++++|.+.+.+|+|++||+.--++..  -....+||..                                   
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN-----------------------------------  345 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN-----------------------------------  345 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence            988776 78899999999999999987633211  1112222211                                   


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                               ...-.-+-+.+....++++++|...|||.+..|.+++++..
T Consensus       346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence                     11222233456778899999999999999999999998873

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.43  E-value=1.1e-06  Score=89.60  Aligned_cols=122  Identities=12%  Similarity=0.200  Sum_probs=101.9

Q ss_pred             hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------ccHHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHHH
Q 001258            5 SRELVFLILQFLDEEKFKETVHKLEQESGFF--------FNMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFE   75 (1113)
Q Consensus         5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~~   75 (1113)
                      +.-+.|+|+.||..+||.++|..|-++|.+.        .++..++++|+.|+...|+...+.-. .+.  +....+-|.
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~  192 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ  192 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence            4557899999999999999999999999975        23778999999999999988877652 111  222247899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccch
Q 001258           76 IRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENE  128 (1113)
Q Consensus        76 l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~  128 (1113)
                      ++.|.|+||+..+++.+|+.+.++.+.|....+.+.++....++.++......
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~s  245 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSS  245 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCcc
Confidence            99999999999999999999999999999888889999999988886555433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.42  E-value=7.8e-05  Score=88.08  Aligned_cols=275  Identities=9%  Similarity=0.140  Sum_probs=154.8

Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  830 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~  830 (1113)
                      ...|.++.|..+...++.+...|.|.+-|.+.                      ......    ..-...|.+++||||+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De  121 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE  121 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence            36899999999999999999999988765442                      221111    1146789999999999


Q ss_pred             CEEEEEeC-CeEEEEECCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeeccccc
Q 001258          831 SYVMSASG-GKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSK  903 (1113)
Q Consensus       831 ~~l~~~sd-g~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~  903 (1113)
                      +.++..+. +++.+ ...+...+....-+     .+....+-|-. ..+.+ -| ..|...-.+.... +...... -.+
T Consensus       122 e~l~liT~~~tll~-mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~-~~~  196 (1265)
T KOG1920|consen  122 ELLALITGRQTLLF-MTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIE-QDD  196 (1265)
T ss_pred             cEEEEEeCCcEEEE-Eeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchh-hcc
Confidence            99999885 55544 33444433222111     11222233321 11111 11 1111111111100 0001111 122


Q ss_pred             CeEEEEEcCCCCEEEEE-----eCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE----EcCCe
Q 001258          904 RITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV----VHETQ  974 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~-----s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~----~~d~~  974 (1113)
                      .=+++.|--||.++|+.     ...+.|++||-+. ....   ...+..     +.-.+++|-|.|..+++    .+|+.
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~Lns---~se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-ALNS---TSEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEecccc-hhhc---ccCccc-----ccccceeecCCCCeEeeeeecCCCCc
Confidence            34578999999998873     2237899999872 2211   111111     23468999999999998    25678


Q ss_pred             EEEEeCCccceeecccc--CCCCCCeeEEEECCCCCEEEE---EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccc
Q 001258          975 LAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHP 1049 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s---~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~ 1049 (1113)
                      |.+|..+.... ..|..  .....++..++|+.++..|++   ......|++|-+.+.....+....  .+ +   ..  
T Consensus       268 IvffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~--~~-~---~~--  338 (1265)
T KOG1920|consen  268 IVFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ--FS-Q---KA--  338 (1265)
T ss_pred             EEEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe--cc-c---cc--
Confidence            99998654332 22221  112344999999999999987   444555999998876544322210  11 1   11  


Q ss_pred             eEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258         1050 LVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1050 i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
                       -++|+|.....|..-..+|...+.+
T Consensus       339 -~~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  339 -LLMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             -cccccCCCceeEEEEecCCcEEEEE
Confidence             1677776555555554555544433

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.42  E-value=7.1e-07  Score=62.55  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=37.1

Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      ++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.40  E-value=3.9e-07  Score=102.10  Aligned_cols=198  Identities=16%  Similarity=0.200  Sum_probs=143.9

Q ss_pred             ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC--cEE
Q 001258          850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLC  927 (1113)
Q Consensus       850 ~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--~v~  927 (1113)
                      +..++|..|....+|++|+. +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+.+.+.-.  -..
T Consensus      1092 r~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             ccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHH
Confidence            34456777888899999999 889999999999999999999999999999999999999999998877665433  467


Q ss_pred             EEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccC--CCCCCeeEEEEC
Q 001258          928 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATFS 1004 (1113)
Q Consensus       928 iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~--~h~~~v~~l~~s 1004 (1113)
                      +|++...-.    .....       ..-.++.|+.....-+.| ......+||+.|+....++..+  +....-.+..||
T Consensus      1171 LW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1171 LWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred             HhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence            999876211    11111       234678888876655554 4467889999999887774421  123344788999


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1005 CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1005 ~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |+.++++   .||  .+||+...+.+++|.-.       +..+.   =.|+| .|+.++.-+     .|||+++-+
T Consensus      1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~f-------t~~~~---G~FHP-~g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQF-------TDYGG---GGFHP-SGNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             CCcceEe---eCc--eeeeeccHHHHhhhhhh-------eeccc---ccccC-CCceEEeec-----hhhhhHHHH
Confidence            9999887   466  57999888877776521       11111   36788 566666543     578877655

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.36  E-value=0.00012  Score=76.47  Aligned_cols=207  Identities=17%  Similarity=0.183  Sum_probs=131.4

Q ss_pred             ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc-cceeee
Q 001258          821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS  896 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~~  896 (1113)
                      ...++++.||+++++..   .-.|.|.|+..++.+.++...  .+..+ | |.+++-+.+-|.||.+.-..+. .|+...
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~i-y-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~  172 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLI-Y-PSGNRGFSMLCGDGSLLTVTLDADGKEAQ  172 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEE-E-EEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEE-E-ecCCCceEEEecCCceEEEEECCCCCEeE
Confidence            45578999999999875   578999999999988877522  22222 2 3244567788899999999887 455442


Q ss_pred             ee----cccccCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCCceEEEccCCcEE
Q 001258          897 KL----KGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       897 ~l----~~h~~~V-~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~spdg~~l  967 (1113)
                      +.    ..-.+++ ..-+++..+..++-.+.+|.|+--|+................    ....++.-..+++++....|
T Consensus       173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rl  252 (342)
T PF06433_consen  173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRL  252 (342)
T ss_dssp             EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEE
T ss_pred             eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeE
Confidence            21    1112222 233444555566667888888888877654322222221110    00111344668898876666


Q ss_pred             EE----EcCC-------eEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeecC
Q 001258          968 LV----VHET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       968 ~~----~~d~-------~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .+    +.++       .|.++|+.+++.+..+..   ..++.+|..+.|.+ +|++.+ .++.+.|||..+|+.+.++.
T Consensus       253 yvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  253 YVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            55    2222       588999999999999875   45788999999888 555544 57899999999999998876

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.35  E-value=0.0011  Score=78.71  Aligned_cols=274  Identities=14%  Similarity=0.131  Sum_probs=146.4

Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                      ..|..+.|..+.+.++.+..+|.|.+-|..+......-...   ..|.+++|+||+..++..+..+++.+-.- +- .++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~-~f-~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTK-DF-EPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEec-cc-cch
Confidence            35666777777778999999999999988776543332222   35899999999999999999888866432 11 111


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ....-+...-.                                                ....+..+....-.-+....+
T Consensus       144 ~E~~L~~d~~~------------------------------------------------~sk~v~VGwGrkeTqfrgs~g  175 (1265)
T KOG1920|consen  144 AEKPLDADDER------------------------------------------------KSKFVNVGWGRKETQFRGSEG  175 (1265)
T ss_pred             hcccccccccc------------------------------------------------ccccceecccccceeeecchh
Confidence            11000000000                                                000011111110000010000


Q ss_pred             CCCCcce---ecccCcccccCceEEEEEeCCCceEEEeec----C-CeEEEEEccccccCCCCceeeeecCeecCCCCcc
Q 001258          735 SEPNQCR---SLRLPENLRATKISRLIFTNSGNAILALAS----N-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  806 (1113)
Q Consensus       735 ~~~~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~----d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~  806 (1113)
                      .....-.   .-..+.......=.++.|--||+++++..-    + ..++|||-+                       |.
T Consensus       176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~  232 (1265)
T KOG1920|consen  176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA  232 (1265)
T ss_pred             hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence            0000000   000000001223356889999998877322    3 678888754                       11


Q ss_pred             ccccccCCCCCCCCccEEEEecCCCEEEEEe----CCeEEEEECCC---CceeeeecCCCCCeeEEEEecCCCcEEEE--
Q 001258          807 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT---FKTMATFMPPPPAATFLAFHPQDNNIIAI--  877 (1113)
Q Consensus       807 ~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s----dg~i~vwd~~~---~~~~~~~~~~~~~i~~l~~s~~d~~~la~--  877 (1113)
                      +-..   .....+.-.+++|-|.|..+++-.    |+.|.+|.-+.   +.....++.....+..++|+. ++.+||+  
T Consensus       233 Lns~---se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~  308 (1265)
T KOG1920|consen  233 LNST---SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT  308 (1265)
T ss_pred             hhcc---cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence            1110   001223345789999999999864    57799998653   222233343444589999999 8999998  


Q ss_pred             -EecCCcEEEEEcccce--eeeeecccccCeEEEEEcCCC-CEEEEEeCCCcEEEEe
Q 001258          878 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWS  930 (1113)
Q Consensus       878 -g~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~L~s~s~D~~v~iwd  930 (1113)
                       ......|++|-+.+..  +.+.+.-.....  +.|+|.. ..|..-..+|...+++
T Consensus       309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~  363 (1265)
T KOG1920|consen  309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRD  363 (1265)
T ss_pred             cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEE
Confidence             4455569999887632  223333222222  6676632 2233333455544444

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.34  E-value=0.0019  Score=63.21  Aligned_cols=118  Identities=10%  Similarity=0.080  Sum_probs=84.5

Q ss_pred             EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1113)
Q Consensus       364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  443 (1113)
                      +..-+|.+.+++.|+..+.+.--|..+|+..-+.                 ++   ..+|.+-+.- -|++++.|...|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~-----------------il---g~RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA-----------------IL---GVRIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeeh-----------------hh---CceeeeeeEE-ECCEEEEEEccCc
Confidence            3445666778999999999999999999876431                 11   1233332222 5788999999999


Q ss_pred             EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258          444 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       444 i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  507 (1113)
                      +++.+.++|+....+..+..   -=......+++.  ++..|+.|++.+.-|..+..++...+-
T Consensus        75 lYfl~~~tGs~~w~f~~~~~---vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVILET---VKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEEEEecchhheeeeeehhh---hccceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence            99999999976654333221   112233456677  799999999999999999999887663

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.31  E-value=3.3e-05  Score=87.24  Aligned_cols=222  Identities=11%  Similarity=0.017  Sum_probs=136.7

Q ss_pred             cCCCEEEEEe--CCeEEEEECCCCceeeeecC-CCCCeeEEE-------------------EecCCCcEEEE-EecCCcE
Q 001258          828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLA-------------------FHPQDNNIIAI-GMDDSSI  884 (1113)
Q Consensus       828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~-------------------~s~~d~~~la~-g~~dg~v  884 (1113)
                      .||+||..-.  +..|...+++..++-+.+.- ....+..+.                   ++| ||+.+.. .-..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence            5889999887  46677777776655433321 111222222                   334 4544422 2234567


Q ss_pred             EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258          885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  960 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  960 (1113)
                      .+.|..+.+...++.-- +....+++++||+++++.+.+.    ++..-+...  .........          -..-++
T Consensus       218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e--~d~~vvfni----------~~iea~  284 (635)
T PRK02888        218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE--RDWVVVFNI----------ARIEEA  284 (635)
T ss_pred             EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc--CceEEEEch----------HHHHHh
Confidence            77787776666555432 2446788999999998886322    222222211  100000000          001134


Q ss_pred             ccCCcEEEEEcCCeEEEEeCCc-----cceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCce-----
Q 001258          961 HQDQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL----- 1029 (1113)
Q Consensus       961 spdg~~l~~~~d~~v~v~d~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~----- 1029 (1113)
                      .++|++..+ .++.|.+.|..+     .+.+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+.     
T Consensus       285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            557887666 467899999998     345554443   56788899999999977655 589999999988663     


Q ss_pred             -------eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1030 -------RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1030 -------~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                             ..++.          -...|+..+|.+ +|+...|--.|..|..|++.+
T Consensus       361 ~~~~~~vvaeve----------vGlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPE----------LGLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeec----------cCCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                   33322          123466788987 688889999999999999987

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.31  E-value=1.1e-05  Score=91.74  Aligned_cols=181  Identities=15%  Similarity=0.175  Sum_probs=133.2

Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEE
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  907 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  907 (1113)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|.++.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            445566666 778889999998887777655555665554   5689999999999999999999999999999999987


Q ss_pred             EEEcCCCCEEEEEeC---------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEEEEEcCCeEE
Q 001258          908 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA  976 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~---------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l~~~~d~~v~  976 (1113)
                      +..  .|+.|+++|.         |.-|+|||++.-+..  .++.+..+       ..-+.|.|.  .+..+++.-|+..
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence            766  5889999876         456899999884432  22333322       245677774  3344447888888


Q ss_pred             EEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          977 IFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       977 v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                      +.|..+..-  ...+........+..+++|++|..++.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            888433221  11222223355699999999999999999999999997

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.26  E-value=0.023  Score=66.69  Aligned_cols=593  Identities=11%  Similarity=0.095  Sum_probs=283.1

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  431 (1113)
                      ..++..+-..|+.+-++|  +|.+||.-|.=.+-.+.+-.....          ....++  .+ ..-++|..++.-.+ 
T Consensus       301 e~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ile--t~-~NLgPI~Dm~Vvd~d  365 (1096)
T KOG1897|consen  301 EYLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILE--TF-VNLGPIVDMCVVDLD  365 (1096)
T ss_pred             EecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhh--hc-ccccceeeEEEEecc
Confidence            345566677788888888  588899877666655544322110          000001  11 12347877776542 


Q ss_pred             ---CCeEEEEe---CCCeEEEEEccCCceeeeeeeeecccCCeeEEE--EcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          432 ---GSLFGVAY---SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       432 ---g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                         +..+++|+   .||+++|..-.=+-.......+.| -..++.+.  +.++-.. +++.+-.+ .-++..+...-...
T Consensus       366 ~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~-eTrvl~i~~e~ee~  442 (1096)
T KOG1897|consen  366 RQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFIS-ETRVLNISEEVEET  442 (1096)
T ss_pred             ccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEecc-ceEEEEEccceEEe
Confidence               23555553   589999875433221111223445 44677777  4443332 23333222 22333332221111


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      ...+.......+..+. -+++.|+=.. ...||+++-.  .....+..++......+.                      
T Consensus       443 ~~~gf~~~~~Tif~S~-i~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~~ti~~~~----------------------  496 (1096)
T KOG1897|consen  443 EDPGFSTDEQTIFCST-INGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGKITIGVVS----------------------  496 (1096)
T ss_pred             ccccccccCceEEEEc-cCCceEEEEe-cccEEEEcch--hhhhcccCCCceEEEEEe----------------------
Confidence            1122222222222211 1112222221 2235555332  122222222221111111                      


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC--C----CEEEEEECCCcEEEEEcCCCccceecc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      -+...++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.-.......+...
T Consensus       497 ~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~  575 (1096)
T KOG1897|consen  497 ANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE  575 (1096)
T ss_pred             ecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence            122246667767777777776655 333322333457889999973  2    378888776665544322221111111


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC--
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS--  735 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~--  735 (1113)
                      .-....            -|.+                   .....      +-.+..++.++..||.+.-|-+....  
T Consensus       576 ~l~~~~------------iPRS-------------------Il~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~  618 (1096)
T KOG1897|consen  576 QLSGEI------------IPRS-------------------ILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQ  618 (1096)
T ss_pred             ccCCCc------------cchh-------------------eeeEE------eeccceEEEEEcCCceEEEEEEEcccce
Confidence            000000            0000                   00001      11236788899999988766655322  


Q ss_pred             CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258          736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  815 (1113)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~  815 (1113)
                      .....+ .    .....++.--.|+..++.-+.+.+|.-..+|.-.                       +.+....+.- 
T Consensus       619 lsd~Kk-~----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls~-  669 (1096)
T KOG1897|consen  619 LSDRKK-V----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLSL-  669 (1096)
T ss_pred             Eccccc-c----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccch-
Confidence            111110 0    1123445555565555555555555444444221                       1100000000 


Q ss_pred             CCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEec-----------C-
Q 001258          816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D-  881 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~-----------d-  881 (1113)
                      ..-..+..+.-+.-...++++..+.+++.-++.-+.  ++++.- ......+++.+ ....+++.+.           . 
T Consensus       670 kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~  747 (1096)
T KOG1897|consen  670 KEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEY  747 (1096)
T ss_pred             HHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcCCcc
Confidence            000111111112233467777778888877764333  233332 23355566665 3334433321           1 


Q ss_pred             --CcEEEEEcccceeeeeecc----cccCeEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCcccccccccc
Q 001258          882 --SSIQIYNVRVDEVKSKLKG----HSKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQI  944 (1113)
Q Consensus       882 --g~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d-~~~L~s~s~----------D~~v~iwd~~~~~~~~~~~~~~  944 (1113)
                        ..++++|-++.+.+....-    -...|.++.|..| +.++++|..          .|.|.++.+......+......
T Consensus       748 ~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~  827 (1096)
T KOG1897|consen  748 EVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV  827 (1096)
T ss_pred             eEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee
Confidence              1467777666554433221    1124555668877 677777643          3567777766522211111111


Q ss_pred             CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      ..      +  ...+.-.-...++++-+..|++|++.+.+.++.-.  .|..++..+.+.-.|..+++|..=+.|.+-..
T Consensus       828 v~------G--av~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y  897 (1096)
T KOG1897|consen  828 VK------G--AVYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQY  897 (1096)
T ss_pred             ec------c--ceeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEE
Confidence            11      1  11222222334555667889999999886665544  66889999999999999999988888777655


Q ss_pred             CCCc--eeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1025 ANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1025 ~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ...+  ..-.  ...+    +..+.+.  +.+.  +++..+.+..+|.+++-...+
T Consensus       898 ~~~eg~f~ev--ArD~----~p~Wmta--veil--~~d~ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  898 KGDEGNFEEV--ARDY----NPNWMTA--VEIL--DDDTYLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             eccCCceEEe--ehhh----Cccceee--EEEe--cCceEEeecccccEEEEEecC
Confidence            4433  3321  1122    2233443  4443  456777778889998887653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=1.9e-05  Score=88.91  Aligned_cols=189  Identities=16%  Similarity=0.155  Sum_probs=130.7

Q ss_pred             CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258          860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  939 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~  939 (1113)
                      ..+.|++++.   ++++.|+.+|.|++++... .. .+...|+..      ..+|.+++|||.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~~---~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVHD---KFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhhc---ceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            3577777764   7999999999999999763 33 444446554      56899999999999999999888543221


Q ss_pred             cccccCCCCCCCCCCCceEEEccC-----CcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spd-----g~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                           ..-+    .++..++++||     .+.+++|.+..+.++.-.-..-........-.++|.++.|  .|.++|-++
T Consensus       109 -----~df~----rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 -----YDFK----RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             -----EecC----CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence                 1111    36789999998     5667776554477776443222222222234789999999  477888887


Q ss_pred             CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1015 LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1015 ~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      ++| |+|||..+++.+..+.++...   ......+-.+.|.+  ...|+.| ..-+|+|..++
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~---~R~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQS---VRPELFPPHLHWQD--EDRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCC---CCcccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence            666 999999999999887754422   22334444688876  3456554 56679999988

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=0.0001  Score=76.41  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=70.7

Q ss_pred             cccCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      ++.+|...|..++|||..+ +|..++.+..|+|.|+.+...+.   .+..| ..+++++|.-|... ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            6888999999999999777 78889999999999999987665   55666 78999999999876 8899999999999


Q ss_pred             EeCCCCc
Q 001258          494 WDATNGA  500 (1113)
Q Consensus       494 wd~~~~~  500 (1113)
                      ||++..+
T Consensus       263 yD~R~~~  269 (463)
T KOG1645|consen  263 YDMRQPE  269 (463)
T ss_pred             EEccCCC
Confidence            9998643

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.25  E-value=2.5e-06  Score=59.77  Aligned_cols=34  Identities=24%  Similarity=0.604  Sum_probs=32.7

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  448 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd  448 (1113)
                      .+.+|.+.|++|+|+|++.+|++|+.|+.|++||
T Consensus         6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            5789999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=9e-05  Score=84.27  Aligned_cols=202  Identities=14%  Similarity=0.175  Sum_probs=128.1

Q ss_pred             EEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCcccc-
Q 001258          866 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK-  938 (1113)
Q Consensus       866 ~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~-  938 (1113)
                      +|++ ++..+|.|+.+|.|.+++ .+-+.+..++.+... |+.+....+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4566 677899999999999987 345556788888777 666665556689999988765     8999998754332 


Q ss_pred             cccc---ccCCCC-CCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccc--eeeccccCCCCCCeeEEEECCCCCEEE
Q 001258          939 NRFL---QIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY 1011 (1113)
Q Consensus       939 ~~~~---~~~~~~-~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1113)
                      ..+.   .+..-. ...+.++..++.+.+-+.+|+| .+|.|..+.-+-..  ..+.-..+....+|+.+++..|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            2222   222211 1123578899999999999998 78888887532111  111111122378999999999998844


Q ss_pred             EEeCCCcEEEEecCCCceeee-cCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1012 ACFLDATVCVFSAANLKLRCR-INPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1012 s~~~Dg~v~vwd~~~~~~~~~-~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      -+..-..|.+|.+........ +.       .|...+.  |.++++.-+. +++++ +..|.+++...-.
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld-------~~G~~ln--Css~~~~t~q-fIca~-~e~l~fY~sd~~~  246 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD-------NNGISLN--CSSFSDGTYQ-FICAG-SEFLYFYDSDGRG  246 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec-------cCCccce--eeecCCCCcc-EEEec-CceEEEEcCCCcc
Confidence            444567899999984332222 22       3333333  4666653322 44433 5668888766433

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.12  E-value=0.00093  Score=74.08  Aligned_cols=281  Identities=11%  Similarity=0.143  Sum_probs=142.4

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeee------------ecCeecCCC--------Ccccccccc
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS------------VAPQLWQPP--------SGIMMTNDV  812 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~------------~~~~lw~~~--------~g~~~~~~~  812 (1113)
                      .|+.+.|+++..-++++...|.+.||.+....+.........            ..-.+-|+.        .|..-...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            578999999988899999999999999987644320000000            011122221        232222222


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee--cC------CCCCeeEEEEec----CCC---cEEE
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF--MP------PPPAATFLAFHP----QDN---NIIA  876 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~--~~------~~~~i~~l~~s~----~d~---~~la  876 (1113)
                      ..  ..+.|++++.| |--++|+|. +|.+.|.|++....+..-  ..      ....++++.|+-    +|+   -+|+
T Consensus        83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22  47889999997 556999999 899999999877665441  11      234588888872    133   4788


Q ss_pred             EEecCCcEEEEEccc---ceeeeee----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccc---ccCC
Q 001258          877 IGMDDSSIQIYNVRV---DEVKSKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL---QIPT  946 (1113)
Q Consensus       877 ~g~~dg~v~iwd~~~---~~~~~~l----~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~  946 (1113)
                      +|+..|.+.+|.+.-   +.....+    ..+.++|..+                  ...+.++++.......   ....
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence            899999999998752   1111111    1122222222                  2223333322111100   0001


Q ss_pred             CCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEEC-----CCCCEEEEEeCCCcEEE
Q 001258          947 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus       947 ~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s-----~dg~~l~s~~~Dg~v~v 1021 (1113)
                      +.             +...+++++++..++++...+.+......  ...-....+++-     ..+..|++-..||.|++
T Consensus       222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i  286 (395)
T PF08596_consen  222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI  286 (395)
T ss_dssp             T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred             CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence            10             11235667889999999999888766654  112223344452     35667889999999999


Q ss_pred             EecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258         1022 FSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1022 wd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
                      +.+...+.+..+.....   -....+..  .++++ +|+.++-.+ ...+.++.+
T Consensus       287 ~SLP~Lkei~~~~l~~~---~d~~~~~~--ssis~-~Gdi~~~~g-psE~~l~sv  334 (395)
T PF08596_consen  287 YSLPSLKEIKSVSLPPP---LDSRRLSS--SSISR-NGDIFYWTG-PSEIQLFSV  334 (395)
T ss_dssp             EETTT--EEEEEE-SS------HHHHTT---EE-T-TS-EEEE-S-SSEEEEEEE
T ss_pred             EECCCchHhhcccCCCc---cccccccc--cEECC-CCCEEEEeC-cccEEEEEE
Confidence            99999999988774311   11112222  44555 677766654 334444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.10  E-value=4.8e-06  Score=51.43  Aligned_cols=27  Identities=37%  Similarity=0.551  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001258            6 RELVFLILQFLDEEKFKETVHKLEQES   32 (1113)
Q Consensus         6 ~~v~~li~q~L~~~g~~~s~~~L~~Es   32 (1113)
                      +++++||++||.++||.+||.+|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            589999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.07  E-value=0.0034  Score=73.16  Aligned_cols=215  Identities=12%  Similarity=0.082  Sum_probs=113.2

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeec---ccCCee--EEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V~--~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      +..+..++.++.|.-.|..+|+.+-....-..   +...+.  .++.. ++.  .++.++.++.|.-+|.++|+.+-.+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            44566677788899999999886643211000   000110  11121 213  47777889999999999999987765


Q ss_pred             ccCcC--EEEEeeeecCCceEEEEEe---------cCCcEEEEEcCCCCCeeeeeCCCCceEEEE-EccCCCeEEecccc
Q 001258          507 GHEAP--VYSVCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQGFRK  574 (1113)
Q Consensus       507 ~h~~~--v~~~~~~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~~~~~  574 (1113)
                      .....  -..+.-.+.-.+..++.++         .+|.+...|..+++.+..+.........+. +.... ... +...
T Consensus       138 ~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-~~~g  215 (488)
T cd00216         138 NNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-GPGG  215 (488)
T ss_pred             CCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-cCCC
Confidence            33221  0001100111113455543         367899999999888876654321110000 00000 000 0111


Q ss_pred             Cc-eeEEEecCCCCEEEEEecCC------------------cEEEEECCCCceEEEEccCCCCC----CcCeEEEC----
Q 001258          575 RS-LGVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN----  627 (1113)
Q Consensus       575 ~~-i~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s----  627 (1113)
                      .. .....+++.+..++.++.++                  .|.-+|..+|+.+..+....+..    ......+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence            11 11234455556677776554                  78889999999888765322110    00111111    


Q ss_pred             CCCC---EEEEEECCCcEEEEEcCCCc
Q 001258          628 KDGC---LLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       628 ~~~~---~l~~~~~dg~i~iwd~~~~~  651 (1113)
                      -++.   .+++++.+|.+..+|..+|+
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCCc
Confidence            1232   56777788888888888873

The alignment model contains an 8-bladed beta-propeller.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.05  E-value=8.8e-05  Score=84.67  Aligned_cols=183  Identities=11%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ++..++.|+-...+..+|+.+.+..+   ...-..+.|.-++  .+++  ++.+|...|+|.+-|..+.+.++++..|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r---~~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETR---TTNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeee---eeeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            46678888888889999999877554   2222233455555  4567  799999999999999999999999999999


Q ss_pred             CEEEEeeeecCCceEEEEEec---------CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .|..+..    .|+.|+++|.         |..|++||++....+.-+..+.++                      ..+.
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P----------------------~flr  272 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP----------------------QFLR  272 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc----------------------hhhh
Confidence            9998763    3468888874         567899999986655433322221                      1233


Q ss_pred             ecCCC-CEEEEEecCCcEEEEECCCC-ce-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258          582 FDTTK-NRFLAAGDDFSIKFWDMDSV-QL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1113)
Q Consensus       582 ~~~~~-~~l~~~~~dg~i~iwd~~~~-~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  646 (1113)
                      |.|.- ..+++++..|...+-|..+. .+ ......+.....+..+.++++++.++.|..+|.|.+|.
T Consensus       273 f~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  273 FHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             hcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            33322 35788888999999883321 11 22222222234588999999999999999999999997

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00053  Score=76.73  Aligned_cols=282  Identities=12%  Similarity=0.092  Sum_probs=158.2

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      +...|.--+++..+++++.|++-|.+++|+-..                      |........+  ....+....++++
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~----------------------~~~~~~~~~~--~~~~~~~~~vs~~   87 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHT----------------------GEMRKLKNEG--ATGITCVRSVSSV   87 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCc----------------------hhhhcccccC--ccceEEEEEecch
Confidence            455666677888899999999999999987542                      2222211111  3445566778888


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceee-----ee-cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc----eeeeee
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMA-----TF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKL  898 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~-----~~-~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l  898 (1113)
                      ..++|.|+ .|.|.|+-+.......     .. ..|...|++++|++ ++..+.+|...|.|..-.+.+.    ...+.+
T Consensus        88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i  166 (726)
T KOG3621|consen   88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI  166 (726)
T ss_pred             hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence            88888888 6889998887533211     11 23677899999999 9999999999999999888772    111233


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC----CcEEEEEcCCe
Q 001258          899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQ  974 (1113)
Q Consensus       899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd----g~~l~~~~d~~  974 (1113)
                      -.-.+.|..|... ++.+|++.....  .+++++.....+ .-.+...+.     .-...+|-|.    .+-.+++..-.
T Consensus       167 l~~ds~IVQlD~~-q~~LLVStl~r~--~Lc~tE~eti~Q-IG~k~R~~~-----~~~GACF~~g~~~~q~~~IycaRPG  237 (726)
T KOG3621|consen  167 LSEDSEIVQLDYL-QSYLLVSTLTRC--ILCQTEAETITQ-IGKKPRKSL-----IDFGACFFPGQCKAQKPQIYCARPG  237 (726)
T ss_pred             eccCcceEEeecc-cceehHhhhhhh--heeecchhHHHH-hcCCCcCCc-----cccceEEeeccccCCCceEEEecCC
Confidence            3345667777665 445555544332  344444322110 000111110     1244555554    33444455555


Q ss_pred             EEEEeCC-ccceeecccc---------------------------CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          975 LAIFETT-KLECVKQWVP---------------------------RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       975 v~v~d~~-~~~~~~~~~~---------------------------~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      .|+|..+ .|+.+++...                           +.|.-....+.+-.++ ++++-+.-| |+|+|..+
T Consensus       238 ~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~  315 (726)
T KOG3621|consen  238 LRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNN  315 (726)
T ss_pred             CceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEecc
Confidence            6777654 2333222110                           0001111111222222 444444444 88999888


Q ss_pred             CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1027 LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1027 ~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ...+....       + ...|..  ++.   +|+-|.+-..||.+++..+.+.+
T Consensus       316 ~~v~l~se-------~-~~DI~d--Vs~---~~neiFvL~~d~~l~~~sv~s~q  356 (726)
T KOG3621|consen  316 SQVYLWSE-------G-GHDILD--VSH---CGNEIFVLNLDRGLKVESVASRQ  356 (726)
T ss_pred             ceEEEeec-------C-CCceeE--Eee---cCceEEEEecCCceeEEEeehhH
Confidence            77765432       1 122222  332   35666666778888888776655

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.04  E-value=0.0013  Score=73.06  Aligned_cols=268  Identities=14%  Similarity=0.190  Sum_probs=139.4

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeE------ee------------eeeeeccCCCC------ccccccc
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACS------MPLQAAL  415 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~  415 (1113)
                      .|+++.|+++... |++|...|.|.||.+..++...      ..            +-++.|+....      .-.+..+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5899999999886 8999999999999987654432      00            11222332111      1123345


Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeec------ccCCeeEEEEc---C--CC-CeeEEE
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS---H--PN-KQLCVI  483 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~V~~v~~s---~--~~-~~~~l~  483 (1113)
                      +....++|++++.| |=-++|.|+.+|.+.|.|++....+.. ..+..      ....|+++.|+   .  |+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66668999999998 666999999999999999987765543 22333      34468888886   2  22 124678


Q ss_pred             EecCCCcEEEEeCC-C--Ccee----eEeeccCcCEEEEeeeecCC-------------------ceEEEEEecCCcEEE
Q 001258          484 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKEN-------------------IQFIFSTALDGKIKA  537 (1113)
Q Consensus       484 s~s~d~~i~iwd~~-~--~~~~----~~~~~h~~~v~~~~~~~~~~-------------------~~~l~s~~~dg~i~i  537 (1113)
                      .|...|.+.+|.+. .  +.-.    .....+.++|..+..-....                   -+-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            88888999999775 1  2111    11124566766665221110                   012333444677888


Q ss_pred             EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1113)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1113)
                      +...+.+...........+..+.+-+-..                ...+..|++...+|.|++|.+...+.+..+.....
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~----------------~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTIS----------------RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecc----------------cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence            87766544433331111222222211000                11223478888999999999999998888765421


Q ss_pred             --CCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          618 --LPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       618 --~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                        ...+...+++++|..++-.+. ..+.++.+
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence              123567788888887766544 34444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.04  E-value=0.0035  Score=65.87  Aligned_cols=137  Identities=12%  Similarity=0.132  Sum_probs=82.4

Q ss_pred             CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe----------cCCcEEEEEcCCCCCeeeeeCCCC-ceE
Q 001258          489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGR-WCT  557 (1113)
Q Consensus       489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~-~v~  557 (1113)
                      +.+.|.|..+++.+..+..--..-  +.++  ++++.+++++          ..-.|.+||..+.....++..+.. ...
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~~~~--~~~s--pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~   92 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGFLGN--VALS--PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQ   92 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEESSEE--EEE---TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--
T ss_pred             ceEEEEECCCCcEEEEeecccCCc--eeEC--CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhe
Confidence            478899988888877665322221  2333  4556666543          234699999998877665554432 111


Q ss_pred             EEEEccCCCeEEeccccCceeEEEecCCCCEEEE--EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEE
Q 001258          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLA  634 (1113)
Q Consensus       558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~  634 (1113)
                      .+.               ......++.++++++.  .+-...|.|-|+..++.+..+...+      |.-.-| ..+-+.
T Consensus        93 ~~~---------------~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~~~~F~  151 (342)
T PF06433_consen   93 VVP---------------YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSGNRGFS  151 (342)
T ss_dssp             BS-----------------GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEETTEEE
T ss_pred             ecc---------------cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecCCCceE
Confidence            110               1112344555555555  3446679999999999988886543      233334 224577


Q ss_pred             EEECCCcEEEEEcCCC
Q 001258          635 VSTNDNGIKILATSDG  650 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~  650 (1113)
                      +-+.||.+.-..+...
T Consensus       152 ~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen  152 MLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             EEETTSCEEEEEETST
T ss_pred             EEecCCceEEEEECCC
Confidence            8889999988888743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=0.0055  Score=68.32  Aligned_cols=104  Identities=16%  Similarity=0.272  Sum_probs=63.4

Q ss_pred             cCCCCeEEEEEe--------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          367 HPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       367 spdg~~ll~~gs--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      |||++++|+.-.        ..+.+.|||+.+++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            789998665321        23678899999876543                    11124578899999999999988


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeec-------c---------cCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEe
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD  495 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd  495 (1113)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+-|||||++  |+.. -.+..|+.+.
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP  129 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence            6 56799999887754432  2222       0         122367889999996  4433 2344444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00059  Score=77.95  Aligned_cols=203  Identities=12%  Similarity=0.159  Sum_probs=136.0

Q ss_pred             EEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc-----
Q 001258          824 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD-----  892 (1113)
Q Consensus       824 l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~-----  892 (1113)
                      -++++.+..++.|+ +|.|.+.+- ..+.++.++.+...+...-+.-++..+|++-++|+     .|+||++..-     
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            45678888999998 898888773 33445777777777333334432446788777665     4899998642     


Q ss_pred             -eeee--eecc-----cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          893 -EVKS--KLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       893 -~~~~--~l~~-----h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                       .++.  .+.+     ...++.+++.+.+-+.+|.|-.||.|..+.=+--+....+......+.    .+|+.+++..|+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d~  183 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSDG  183 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecCC
Confidence             2331  2222     346788999999999999999999999885333222222222222222    579999999999


Q ss_pred             cE-EEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          965 IH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       965 ~~-l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +. +.++.-..|.+|.+.... ...-..+.|+..+.|-.|++-...+++++ +..+.+|+.+.......+
T Consensus       184 ~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf  251 (933)
T KOG2114|consen  184 KSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF  251 (933)
T ss_pred             ceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence            98 455778889999998444 33333457788999999987655355554 567999998855444343

>smart00668 CTLH C-terminal to LisH motif

Probab=98.00  E-value=5.5e-06  Score=64.10  Aligned_cols=52  Identities=33%  Similarity=0.523  Sum_probs=42.9

Q ss_pred             HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHHHHHHHHhcCCH
Q 001258           38 MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   90 (1113)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lell~~~~~   90 (1113)
                      +..++++|+.|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        5 RKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            67899999999999999999988544322323 49999999999999998764

Alpha-helical motif of unknown function.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.99  E-value=0.00056  Score=77.59  Aligned_cols=186  Identities=13%  Similarity=0.148  Sum_probs=122.4

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .+++++++  ++.++.|+.+|.+++++.+..                       .... +   .|...      ..+|.+
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~-----------------------~~~~-~---~~s~~------~~~Gey   85 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGN-----------------------PKTN-F---DHSSS------ILEGEY   85 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCc-----------------------cccc-c---ccccc------ccCCce
Confidence            34444443  556888888999998875421                       0000 0   02221      568999


Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecC----CCcEEEEEecCCcEEEEEccc-c-eeeeeecccccCe
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRV-D-EVKSKLKGHSKRI  905 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~la~g~~dg~v~iwd~~~-~-~~~~~l~~h~~~V  905 (1113)
                      +++++ ||+|.|..+.+.+...++. ...++.+++++|+    ..+.+++|+.-| +.++.-.- | +.-..+..-.++|
T Consensus        86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I  163 (846)
T KOG2066|consen   86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI  163 (846)
T ss_pred             EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence            99999 8999999998887776665 3457999999993    256888899888 77775332 1 1111355567899


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258          906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  981 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~  981 (1113)
                      .++.|.  |+++|-++.+| |++||+.+.......  ..+............+.|.++.+ |++|-..+|+|..++
T Consensus       164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i--~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI--PPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             EEEEec--CcEEEEecCCC-cEEEeccccceeecc--CCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            999994  88999999888 999999886543322  11112221223345677777665 455655667777766

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.97  E-value=0.0041  Score=72.45  Aligned_cols=241  Identities=10%  Similarity=0.077  Sum_probs=138.2

Q ss_pred             CEEEEEe-CCeEEEEECCCCceeeeecCCCCC-----e-eEEEEecCCCcEEEEEe---------cCCcEEEEEccccee
Q 001258          831 SYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-----A-TFLAFHPQDNNIIAIGM---------DDSSIQIYNVRVDEV  894 (1113)
Q Consensus       831 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~d~~~la~g~---------~dg~v~iwd~~~~~~  894 (1113)
                      ..++.++ ++.|.-+|.++++.+-.+......     + .+..+.  + .++++++         .+|.|.-+|..+|+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCce
Confidence            4555555 899999999999998776543321     1 122222  2 3455554         367899999999988


Q ss_pred             eeeeccccc--------------------Ce-EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001258          895 KSKLKGHSK--------------------RI-TGLAFSHALNVLVSSGADS------------------QLCVWSSDGWE  935 (1113)
Q Consensus       895 ~~~l~~h~~--------------------~V-~~l~~s~d~~~L~s~s~D~------------------~v~iwd~~~~~  935 (1113)
                      +-.+.....                    .| ...++.+.+..++.++.|+                  .|.-.|.++++
T Consensus       188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            866543211                    01 1234444566777777665                  68889999887


Q ss_pred             cccccccccCCCCC-CCCCCCceEEE-ccCCc---EEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE
Q 001258          936 KQKNRFLQIPTGRT-PTAQSDTRVQF-HQDQI---HFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL 1009 (1113)
Q Consensus       936 ~~~~~~~~~~~~~~-~~~~~i~~~~~-spdg~---~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1009 (1113)
                      ..-........... ........... .-+|.   .+++ +.++.+..+|.++|+.+-.....     ...++.+|  ..
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~  340 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GL  340 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ce
Confidence            65332111110000 00000000001 12343   3444 47899999999999987765421     12233444  23


Q ss_pred             EEEE------------------eCCCcEEEEecCCCceeeecCCCcccCCC-cccCc--cceEEEEeCCCCCEEEEEeCC
Q 001258         1010 VYAC------------------FLDATVCVFSAANLKLRCRINPSAYLPAG-VSSNV--HPLVIAAHPQEPNEFALGLSD 1068 (1113)
Q Consensus      1010 l~s~------------------~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g-h~~~v--~~i~~~~~p~d~~~l~s~~~D 1068 (1113)
                      ++.+                  ..+|.|.-.|+.+|+.+-+.......... -....  .++.+     .+..|+.++.|
T Consensus       341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~-----~g~~v~~g~~d  415 (488)
T cd00216         341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT-----AGNLVFAGAAD  415 (488)
T ss_pred             EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe-----cCCeEEEECCC
Confidence            3332                  23678888999999988776532110000 00011  11112     35788999999


Q ss_pred             CcEEEEeccCCCccccCC
Q 001258         1069 GGVHVFEPLESEGKWGVP 1086 (1113)
Q Consensus      1069 g~v~vW~~~~~~~~~~~~ 1086 (1113)
                      |.|+.+|..+|+..|+.+
T Consensus       416 G~l~ald~~tG~~lW~~~  433 (488)
T cd00216         416 GYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CeEEEEECCCCceeeEEE
Confidence            999999999999888764

The alignment model contains an 8-bladed beta-propeller.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=0.00054  Score=71.22  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=79.6

Q ss_pred             EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCC-CEEEE
Q 001258          841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVS  919 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~L~s  919 (1113)
                      +++++..+.+...-+..+...|..++|||....++..++.+..|.|.|+.+..++..+..| ..+++++|.-|. .++..
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa  253 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA  253 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence            7777777777777777788889999999944448999999999999999999988888888 789999999765 45666


Q ss_pred             EeCCCcEEEEeCCCCcc
Q 001258          920 SGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       920 ~s~D~~v~iwd~~~~~~  936 (1113)
                      |...|.|.|||+...+.
T Consensus       254 Gl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  254 GLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             eccCceEEEEEccCCCc
Confidence            77899999999987554

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.93  E-value=0.0043  Score=69.16  Aligned_cols=98  Identities=13%  Similarity=0.055  Sum_probs=57.5

Q ss_pred             EEEEe-cCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeE-EEEecCCCcEEEEEecCC----cEEEEEcccc
Q 001258          823 CFALS-KNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATF-LAFHPQDNNIIAIGMDDS----SIQIYNVRVD  892 (1113)
Q Consensus       823 ~l~~s-~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg----~v~iwd~~~~  892 (1113)
                      ...+. +++..++..+  +|  .|.+++..++. .+.+....-.|+. +.++++++.+.+++..++    .|+.-++..+
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~  317 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG  317 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC
Confidence            45554 7777666554  54  57777776655 3455555556754 677884455666666533    5555566623


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEe
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSG  921 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s  921 (1113)
                      ..+..+....+.-..+.|||++++++-..
T Consensus       318 ~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  318 GEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            34455554444336899999999987543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.91  E-value=0.041  Score=64.38  Aligned_cols=61  Identities=13%  Similarity=0.115  Sum_probs=42.2

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  901 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h  901 (1113)
                      |.|.-+|+.+++..-..+............  .+.+++.++.||.++.+|.++|+.+.+.+-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            457888888888776655332222222222  3457777888999999999999999877654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.001  Score=74.46  Aligned_cols=121  Identities=10%  Similarity=0.032  Sum_probs=94.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      |...|.=-+++..+++ ++.|+.-|.+.+|+-.+++.+..                  ...+-.+.+..+..|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence            5566666778888886 99999999999999888776542                  1233456777888999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeee--eee-ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQH--LEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~--~~l-~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      .|+..|.|.|+-+..+..-...  ..+ ..|...|++++|++|+.  .+++|...|+|.+-.+.+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            9999999999988764322111  111 23788999999999999  699999999999888776

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.87  E-value=2.1e-05  Score=52.98  Aligned_cols=32  Identities=38%  Similarity=0.527  Sum_probs=29.7

Q ss_pred             chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001258            4 LSRELVFLILQFLDEEKFKETVHKLEQESGFF   35 (1113)
Q Consensus         4 ~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~   35 (1113)
                      -++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.86  E-value=0.0015  Score=73.34  Aligned_cols=225  Identities=11%  Similarity=0.125  Sum_probs=117.3

Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  830 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~  830 (1113)
                      ....+.+.++|+|+.+++ +.+|...++.....                         ..     ...+.....+|.+.+
T Consensus        32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-------------------------r~-----k~~G~g~~~vw~~~n   80 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-------------------------RN-----KAFGSGLSFVWSSRN   80 (443)
T ss_dssp             SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-------------------------EE-----EEEEE-SEEEE-TSS
T ss_pred             CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-------------------------cc-----cccCceeEEEEecCc
Confidence            345688999999998777 66777777652100                         00     022344668898866


Q ss_pred             CEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE
Q 001258          831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  910 (1113)
Q Consensus       831 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  910 (1113)
                      ++.+.-..++|.++.--..+....+... ..+..+-    .|.+|+..+.+ .|.+||..+++.++.+...  +|..+.|
T Consensus        81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If----~G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W  152 (443)
T PF04053_consen   81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIF----GGNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW  152 (443)
T ss_dssp             EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred             cEEEEECCCeEEEEEcCccccceEEcCC-cccceEE----cCcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence            6555545788999743232332333321 1233332    26777766544 8999999999999998744  3899999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCC------ccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc
Q 001258          911 SHALNVLVSSGADSQLCVWSSDGW------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  984 (1113)
Q Consensus       911 s~d~~~L~s~s~D~~v~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~  984 (1113)
                      +++|.+++-.+.+ ++.|++.+..      +..-...........   ..|.+.+|..| -++.+... .++-+  -.|+
T Consensus       153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d-~fiYtT~~-~lkYl--~~Ge  224 (443)
T PF04053_consen  153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED-CFIYTTSN-HLKYL--VNGE  224 (443)
T ss_dssp             -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT-EEEEE-TT-EEEEE--ETTE
T ss_pred             ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC-EEEEEcCC-eEEEE--EcCC
Confidence            9999999999866 5888876542      000000111111101   36788888887 44444444 66653  3333


Q ss_pred             e--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          985 C--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       985 ~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      .  +..+     ..++.=+.+.+....++....|+.|..+.++..
T Consensus       225 ~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  225 TGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             cceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            2  2322     456777777887778888888888888877644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.81  E-value=0.0013  Score=72.81  Aligned_cols=114  Identities=18%  Similarity=0.190  Sum_probs=81.3

Q ss_pred             CCCccEEEEecCC-CEEEEE----e-CCe----EEEEECCCCceee--e-ecCCCCCeeEEEEecCCCcEEEEEecCCcE
Q 001258          818 EEAVPCFALSKND-SYVMSA----S-GGK----ISLFNMMTFKTMA--T-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  884 (1113)
Q Consensus       818 ~~~v~~l~~s~~~-~~l~~~----s-dg~----i~vwd~~~~~~~~--~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v  884 (1113)
                      +....++.||-.. ..+.+.    + +|.    -.+|++...+..+  . --.....+.+++++| +...|+.|+.||.|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            4455677787533 333332    1 333    4566665443221  1 123567899999999 88899999999999


Q ss_pred             EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258          885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  934 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~  934 (1113)
                      .+||...+..  .+..+.-.++.++|+|+|..+++|+..|.+.+||+.-.
T Consensus       284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999876633  23344566889999999999999999999999998763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.80  E-value=0.0022  Score=72.07  Aligned_cols=220  Identities=16%  Similarity=0.212  Sum_probs=117.8

Q ss_pred             CCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...+..+.++|+|+++++++||...|+.........     .+.....+|.+ .++ +|+-...+.|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            445789999999999999999999999854433322     23456789998 555 66666688999974333333233


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  977 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v  977 (1113)
                      +... ..+..|-.   |.+|...+.+ .|.+||+++++.....  ..        ..|..+.|+++|.+++...+..+.+
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i--~v--------~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRI--DV--------SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEE--SS---------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEE--ec--------CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            3322 12344433   7888777665 7999999986543211  11        1478999999999999987888888


Q ss_pred             EeCCcc--------------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          978 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       978 ~d~~~~--------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      ++.+..              +.+...     ...|.+.+|..| -++++.. . .++.+--.....++.+.         
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYtT~-~-~lkYl~~Ge~~~i~~ld---------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYTTS-N-HLKYLVNGETGIIAHLD---------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE-T-T-EEEEEETTEEEEEEE-S---------
T ss_pred             EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEEcC-C-eEEEEEcCCcceEEEcC---------
Confidence            775543              222221     457888888766 4444443 3 56652222222222222         


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                       ..+.  -+.+.| ..+.+.....|+.|..+.+...+
T Consensus       233 -~~~y--llgy~~-~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  233 -KPLY--LLGYLP-KENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             -S--E--EEEEET-TTTEEEEE-TT--EEEEE--HHH
T ss_pred             -CceE--EEEEEc-cCCEEEEEECCCCEEEEEECHHH
Confidence             1222  245555 34688888899999988876544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.79  E-value=0.016  Score=59.50  Aligned_cols=187  Identities=9%  Similarity=0.105  Sum_probs=103.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      -.+++..++|.|+...|+++....+.|...+.. |+.+.+.+                 +.+ -+....|++..++.+++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence            445699999999988888888888999888864 77765432                 233 24678889988888877


Q ss_pred             EEeCCCeEEEEEccCCce---eee--eeeee---cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CceeeEe
Q 001258          437 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF  505 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---~~~~~~~  505 (1113)
                      +--.++.+.++++.....   ...  ...+.   .+...+-.++|.+.++.  |+.+-...-..|+.+..   +..+...
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence            766789999999843221   111  11111   35567999999999885  33444555556665543   2222211


Q ss_pred             --------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------CceEEEEEccCCC
Q 001258          506 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGT  566 (1113)
Q Consensus       506 --------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~  566 (1113)
                              ......+.++++++. .+.+++....+..|..+| ..++....+....         .....+++.++|+
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~  234 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN  234 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred             cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence                    113345778888765 457888888888898888 3444443333322         2345566666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.79  E-value=0.0039  Score=66.83  Aligned_cols=176  Identities=14%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec---CC-cEEEEEccc-ceeeeeecccc--cCeEEEEE
Q 001258          838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DS-SIQIYNVRV-DEVKSKLKGHS--KRITGLAF  910 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg-~v~iwd~~~-~~~~~~l~~h~--~~V~~l~~  910 (1113)
                      ...|.-.|+.+++....+. ....+..+.|||.|..+|+.+-+   +. .-|||-+.+ +.....+..|.  ..+..=-|
T Consensus       167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw  245 (386)
T PF14583_consen  167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFW  245 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE
T ss_pred             CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccc
Confidence            3456667888877654444 44567889999977777777543   22 236776654 34344444333  33455578


Q ss_pred             cCCCCEEEEEeC-----CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCC-----------
Q 001258          911 SHALNVLVSSGA-----DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET-----------  973 (1113)
Q Consensus       911 s~d~~~L~s~s~-----D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~-----------  973 (1113)
                      .+||..|.--+.     +..|.-+|+.+++...  ....+        .....-.++||++++. |.|.           
T Consensus       246 ~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~  315 (386)
T PF14583_consen  246 VPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYK  315 (386)
T ss_dssp             -TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE--------------
T ss_pred             cCCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCccccccccce
Confidence            999987765332     4467777887754321  22221        2245667899999987 5442           


Q ss_pred             -----eEEEEeCCccceeeccc------cCCCCCCe--eEEEECCCCCEEE-EEeCCCcEEEEec
Q 001258          974 -----QLAIFETTKLECVKQWV------PRESSAPI--THATFSCDSQLVY-ACFLDATVCVFSA 1024 (1113)
Q Consensus       974 -----~v~v~d~~~~~~~~~~~------~~~h~~~v--~~l~~s~dg~~l~-s~~~Dg~v~vwd~ 1024 (1113)
                           .|.++++.++.......      ...|...+  -...|||||++++ +....|...||-+
T Consensus       316 ~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  316 IENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             -----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence                 46678887765432111      10111111  3579999999865 5556777776644

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.78  E-value=0.00041  Score=76.57  Aligned_cols=127  Identities=11%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             ceeEeccCCCCcEEEEEcCCCCeEEEEE----ecCCc----EEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc
Q 001258          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  421 (1113)
Q Consensus       350 ~~~~~~~h~~~V~~~~~spdg~~ll~~g----s~dg~----i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  421 (1113)
                      ++...+.-.....++.||-...+.+.+-    +.+|.    -.+|++..++.. ...+               +-.....
T Consensus       197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq-rvsv---------------tsipL~s  260 (545)
T PF11768_consen  197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ-RVSV---------------TSIPLPS  260 (545)
T ss_pred             EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee-EEEE---------------EEEecCC
Confidence            3444445556668888987555444442    22443    456776654322 1111               2234566


Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  499 (1113)
                      .|.|++++|+.+.|+.|+.||+|.+||...+...     +..+.-..+.++|+|+|.  ++++|+..|.+.+||+.-.
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecC
Confidence            8999999999999999999999999999876422     223455689999999999  8999999999999997643

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.74  E-value=0.019  Score=61.73  Aligned_cols=286  Identities=14%  Similarity=0.107  Sum_probs=136.2

Q ss_pred             EEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          757 LIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      =+|.+||+.|+.++. +|.-.+|-+                    |+.++...+.  +.. .........++++++.++.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~Y   97 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALYY   97 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEEE
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEEE
Confidence            367888977766555 555544432                    4445554442  110 1122335667788888876


Q ss_pred             Ee-CCeEEEEECCCCceeeeecCCCCCeeEEEEec-CCCcEEEEEe---c-------------------CCcEEEEEccc
Q 001258          836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP-QDNNIIAIGM---D-------------------DSSIQIYNVRV  891 (1113)
Q Consensus       836 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~-~d~~~la~g~---~-------------------dg~v~iwd~~~  891 (1113)
                      .. +..|+-.|+++.+....+......+-...|.. .|+..++-.-   .                   ...|.-.|+.+
T Consensus        98 v~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~t  177 (386)
T PF14583_consen   98 VKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKT  177 (386)
T ss_dssp             EETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT
T ss_pred             EECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCC
Confidence            65 67899999999887666665666555555542 2555554221   1                   12355567777


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeC----CCc-EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~----D~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                      |+....+. -..-+..+.|||....++.=+.    |.. -+||-+++.......+.....     ...+..=-|.|||..
T Consensus       178 G~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-----~e~~gHEfw~~DG~~  251 (386)
T PF14583_consen  178 GERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-----GESVGHEFWVPDGST  251 (386)
T ss_dssp             --EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-----TEEEEEEEE-TTSS-
T ss_pred             CceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-----CcccccccccCCCCE
Confidence            76544443 3345678899986655555433    332 377876653322211111111     134566689999998


Q ss_pred             EEE-E-----cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC----------------cEEEEec
Q 001258          967 FLV-V-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFSA 1024 (1113)
Q Consensus       967 l~~-~-----~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg----------------~v~vwd~ 1024 (1113)
                      +.. +     .+..|.-+|..+++......    ......+..++||++++-=+.|.                .|+++++
T Consensus       252 i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~  327 (386)
T PF14583_consen  252 IWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV  327 (386)
T ss_dssp             EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred             EEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence            876 3     23467788888887643322    22344566689999887533332                4677888


Q ss_pred             CCCceeeecCC-Ccc-cCCCcccCccceEEEEeCCCCCE-EEEEeCCCcEEEEecc
Q 001258         1025 ANLKLRCRINP-SAY-LPAGVSSNVHPLVIAAHPQEPNE-FALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1025 ~~~~~~~~~~~-~~~-~~~gh~~~v~~i~~~~~p~d~~~-l~s~~~Dg~v~vW~~~ 1077 (1113)
                      .+++...-... ..+ ...++. .+.--...|+| ||++ |.++...|...|+-++
T Consensus       328 ~~~~~~~l~~h~~sw~v~~~~~-q~~hPhp~FSP-Dgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  328 EAGRFRKLARHDTSWKVLDGDR-QVTHPHPSFSP-DGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTEEEEEEE-------BTTBS-STT----EE-T-TSSEEEEEE-TTSS-EEEEEE
T ss_pred             ccCceeeeeeccCcceeecCCC-ccCCCCCccCC-CCCEEEEECCCCCCccEEEEe
Confidence            87765321111 001 111221 11112489999 5666 5566667776666543

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=0.01  Score=66.59  Aligned_cols=206  Identities=13%  Similarity=0.139  Sum_probs=145.8

Q ss_pred             CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec---CCcEEEEEccccee
Q 001258          820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV  894 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~v~iwd~~~~~~  894 (1113)
                      ....+++++.+..+.+..  ++.|.+.|..+........... ....+++++ +++.+.++..   ++.+.+.|..+++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345788899998666655  6899999988777666654322 578899999 5555544443   68999999998888


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE--
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--  970 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--  970 (1113)
                      +.....-..+ ..++++|+|..+..+. .++.|.+.|.++..... ........+     .....+.++|+|.++.+.  
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~-----~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVG-----TGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccC-----CCCceEEECCCCCEEEEEec
Confidence            8775443344 8999999999666555 78899999977643321 000011111     244789999999987774  


Q ss_pred             cC--CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEecCCCceeeecC
Q 001258          971 HE--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       971 ~d--~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .+  +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            22  58889999888877663222223 56778999999999887544 889999999888877654

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.019  Score=64.83  Aligned_cols=198  Identities=15%  Similarity=0.150  Sum_probs=108.1

Q ss_pred             EEEecCCCEEEEEeCC------------eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          824 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       824 l~~s~~~~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ++.+|.|-.+|...|.            .|.||+.. |+.+..+.-..+.+.++.|+. +. .|++-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCCC
Confidence            4556666666655543            58999875 455555544448899999987 54 455667899999999863


Q ss_pred             ce------eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-ccccc-ccCCCCC--CCCCCCce-EEE
Q 001258          892 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFL-QIPTGRT--PTAQSDTR-VQF  960 (1113)
Q Consensus       892 ~~------~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~-~~~~~-~~~~~~~--~~~~~i~~-~~~  960 (1113)
                      ..      .+....-....+....+..+|-.+.  ..++.+.+-  ...... ..+.. ..+....  ........ ..+
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v--~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l  186 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVV--NNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL  186 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEE--eCccccchhhccccCCCcccccccccccccceEe
Confidence            22      1111111223333334444553333  334444333  222211 00011 1111000  00001111 234


Q ss_pred             ccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          961 HQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       961 spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +.+....+. ..++.+.+.+....+.   .   ...+++..|++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus       187 ~~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  187 SSDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             ecCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            445544444 4555666444332211   1   124689999999999999999999999999887777776665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.71  E-value=0.0047  Score=63.38  Aligned_cols=216  Identities=11%  Similarity=0.103  Sum_probs=113.4

Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      .+.+-...+..++|.|++++++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            455556679999999966788889999999999996 47777665432 3567889998888777776678999999985


Q ss_pred             CCcccc--ccccccCCCC-CCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc---cceeec-----cc-cCCCCCCee
Q 001258          933 GWEKQK--NRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPIT  999 (1113)
Q Consensus       933 ~~~~~~--~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~---~~~~~~-----~~-~~~h~~~v~  999 (1113)
                      ......  .......-+. .........++|++.+..|+++ ...-..+|.+..   ...+..     +. .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            432211  1101111111 1122457899999987777765 444455555543   111110     11 112355688


Q ss_pred             EEEECCCCC-EEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC-ccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258         1000 HATFSCDSQ-LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN-VHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus      1000 ~l~~s~dg~-~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
                      ++++.|... +++.......|..+| .+|+.+..+....... |.... ..+--++|.+ +|++.++ ++-+.++++
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence            999988654 555566677888899 6677776665332110 10011 1233478887 6755444 455655554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.63  E-value=0.0073  Score=67.81  Aligned_cols=178  Identities=13%  Similarity=0.055  Sum_probs=109.6

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe---cC-CcEEEEEcccceeeeeecccccCeEEEEEcCCC
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM---DD-SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~  914 (1113)
                      ..+.+-|.+ +...+.+......+..-+|+| ++..++...   .. ..++++++.+++....+. ..+.-..-+|+|||
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG  249 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDG  249 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCC
Confidence            345555554 455555555556677788999 666554432   22 469999999876544433 22333456899999


Q ss_pred             CEEEEE-eCCCc--EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC----eEEEEeCCccceee
Q 001258          915 NVLVSS-GADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----QLAIFETTKLECVK  987 (1113)
Q Consensus       915 ~~L~s~-s~D~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~----~v~v~d~~~~~~~~  987 (1113)
                      +.|+.+ ..|+.  |.+.|+.++..  .. +....      +.-..-.|+|||++++..+|+    .|.+++.+..+..+
T Consensus       250 ~~l~f~~~rdg~~~iy~~dl~~~~~--~~-Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r  320 (425)
T COG0823         250 SKLAFSSSRDGSPDIYLMDLDGKNL--PR-LTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR  320 (425)
T ss_pred             CEEEEEECCCCCccEEEEcCCCCcc--ee-cccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence            888755 45665  55556666442  11 11111      223467899999999985443    58888888776543


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEeC-CCc--EEEEecCCCceee
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACFL-DAT--VCVFSAANLKLRC 1031 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~--v~vwd~~~~~~~~ 1031 (1113)
                      ....   ...-....|||||++|+..+. +|.  |.+.|+.++....
T Consensus       321 iT~~---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~  364 (425)
T COG0823         321 LTFS---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR  364 (425)
T ss_pred             eecc---CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE
Confidence            3321   112227889999999887764 344  7777776666433

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.62  E-value=0.0001  Score=80.88  Aligned_cols=252  Identities=14%  Similarity=0.167  Sum_probs=152.0

Q ss_pred             CCCccEEEEecCCC--EEEEEe-CCeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEe----cCCcEEEEE
Q 001258          818 EEAVPCFALSKNDS--YVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYN  888 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~--~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~----~dg~v~iwd  888 (1113)
                      ...+.|++..-+.+  .+++|. +|.|.+-.......  ....+++...+++++|++-|.++||+|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            34466666654433  566776 79988887764322  2334567788999999998888999884    466899999


Q ss_pred             cccc--eee--eeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-
Q 001258          889 VRVD--EVK--SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-  962 (1113)
Q Consensus       889 ~~~~--~~~--~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-  962 (1113)
                      +.++  -+.  ..+.+ -.....+++|-.|.+++.+|...+.++++|++-...... ..+.        ..+..+.++| 
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svnT--------k~vqG~tVdp~  206 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVNT--------KYVQGITVDPF  206 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhhh--------hhcccceecCC
Confidence            9876  111  22222 334566899999999999999999999999874211111 1111        1356778888 


Q ss_pred             CCcEEEEEcCCeEEEEe-CCccce-eeccccC--CCCCCeeEEEECCCCC-EEEEEeCC-CcEEEEecCC------Ccee
Q 001258          963 DQIHFLVVHETQLAIFE-TTKLEC-VKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAAN------LKLR 1030 (1113)
Q Consensus       963 dg~~l~~~~d~~v~v~d-~~~~~~-~~~~~~~--~h~~~v~~l~~s~dg~-~l~s~~~D-g~v~vwd~~~------~~~~ 1030 (1113)
                      .+.|++...|+.+.+|| ..+-+- +......  .....+..++|.|-.. .+++.+.| ++|+.+|+..      ++..
T Consensus       207 ~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~  286 (783)
T KOG1008|consen  207 SPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNS  286 (783)
T ss_pred             CCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCccccccc
Confidence            88899988899999999 333322 2222110  0123489999999543 45555544 7799998732      1111


Q ss_pred             eecCCCcccCCCcccCccce-EEEEeCCC-CCEEEEEeCCCcEEEEeccC
Q 001258         1031 CRINPSAYLPAGVSSNVHPL-VIAAHPQE-PNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1031 ~~~~~~~~~~~gh~~~v~~i-~~~~~p~d-~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ..+......|-.|.+.+..| ++.||+.+ -+...++-..-++.-+++..
T Consensus       287 ~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e  336 (783)
T KOG1008|consen  287 VFVNYESKYPVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE  336 (783)
T ss_pred             ceeeecccccccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence            11111121122344422222 36677654 23455555555566555543

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.00065  Score=71.18  Aligned_cols=110  Identities=10%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc----------HHHHHHHhhccCHHHHHHHhccCc-cccCcccchhhHH
Q 001258            6 RELVFLILQFLDEEKFKETVHKLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFF   74 (1113)
Q Consensus         6 ~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~~~~~~-~~~~~~~~~~~~~   74 (1113)
                      +.|..+|..++...|..+.+..|-+|+|...+          +..+-++|.+|+-..|++.+..-. .+.. + ..++-|
T Consensus       117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~-~-~s~LE~  194 (394)
T KOG2817|consen  117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKE-K-SSSLEF  194 (394)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcc-c-cccHHH
Confidence            44689999999999999999999999998753          788999999999999999998752 2221 1 224889


Q ss_pred             HHHHHHHHHHHhcCCHH--HHHHHHHhhcccccccChHHHHHHHH
Q 001258           75 EIRKQKYLEALDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQ  117 (1113)
Q Consensus        75 ~l~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~  117 (1113)
                      .|..+.|++++..|...  +|+...|+.++|+........+.+-.
T Consensus       195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~  239 (394)
T KOG2817|consen  195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMG  239 (394)
T ss_pred             HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            99999999999999988  99999999999997655444554444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.54  E-value=0.099  Score=61.21  Aligned_cols=241  Identities=10%  Similarity=0.097  Sum_probs=134.8

Q ss_pred             EEEEEe-CCeEEEEECCCCceeeeecCCCC----CeeE-EEEecCCCcEEEEEe------cCCcEEEEEcccceeeeeec
Q 001258          832 YVMSAS-GGKISLFNMMTFKTMATFMPPPP----AATF-LAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       832 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~----~i~~-l~~s~~d~~~la~g~------~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .++.++ |+.|.-+|..+++.+........    .+++ -.+.  ++. ++++.      .+|.|+-+|..+|+.+-.+.
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~--~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV--KGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE--CCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            444444 89999999999998866542211    1221 1121  343 44443      26899999999998775542


Q ss_pred             ccc-------------------------------cCeE-EEEEcCCCCEEEEEeCC-----C-----------cEEEEeC
Q 001258          900 GHS-------------------------------KRIT-GLAFSHALNVLVSSGAD-----S-----------QLCVWSS  931 (1113)
Q Consensus       900 ~h~-------------------------------~~V~-~l~~s~d~~~L~s~s~D-----~-----------~v~iwd~  931 (1113)
                      .-.                               ..++ .+++.+...+|..+...     +           .|.--|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            210                               1111 23555555555544421     2           4666777


Q ss_pred             CCCccccccccccCCCCCCCC--CCCceEEEccCCc---EEEE-EcCCeEEEEeCCccceeec--------ccc--CCCC
Q 001258          932 DGWEKQKNRFLQIPTGRTPTA--QSDTRVQFHQDQI---HFLV-VHETQLAIFETTKLECVKQ--------WVP--RESS  995 (1113)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~spdg~---~l~~-~~d~~v~v~d~~~~~~~~~--------~~~--~~h~  995 (1113)
                      ++++..- .+...+.+.....  ....-+.+..+|+   .++. ..+|.+.++|..+|+.+..        +..  ....
T Consensus       279 ~TG~~~W-~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       279 DTGKIKW-HYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             ccCCEEE-eeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            7776542 2222222221111  1222233335776   4444 5889999999999998622        210  0000


Q ss_pred             -----------------------------CCeeEEEECCCCCEEEEEeCC------------------------------
Q 001258          996 -----------------------------APITHATFSCDSQLVYACFLD------------------------------ 1016 (1113)
Q Consensus       996 -----------------------------~~v~~l~~s~dg~~l~s~~~D------------------------------ 1016 (1113)
                                                   ..-..++++|+..+++....+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence                                         001236777777666544433                              


Q ss_pred             ---CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccccCCC
Q 001258         1017 ---ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1087 (1113)
Q Consensus      1017 ---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1087 (1113)
                         |.|.=+|+.+++..-+.......       ..+ .+..   .+.+++.++.||.++.+|.++||..|+..-
T Consensus       438 ~~~g~l~AiD~~tGk~~W~~~~~~p~-------~~~-~l~t---~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       438 DHMGSLIAWDPITGKIVWEHKEDFPL-------WGG-VLAT---AGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             CCceeEEEEeCCCCceeeEecCCCCC-------CCc-ceEE---CCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence               45777888888887765422110       111 1221   356788888899999999999998776633

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.49  E-value=0.24  Score=56.06  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=77.3

Q ss_pred             EEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-c
Q 001258          825 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S  902 (1113)
Q Consensus       825 ~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~  902 (1113)
                      .++.+....+... ++.+.+.+....+.   +. ..+++..+++|| +++++|.-..+|.+.|.+..-.+.+..+... .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            3445555544444 56676555433211   22 245799999999 8999999999999999886655566555443 3


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCc
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  982 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~  982 (1113)
                      .....+.|.-+...++.-  ...|.+.....                      ..+.|.-++..++...-..+||+.-..
T Consensus       260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~  315 (410)
T PF04841_consen  260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS  315 (410)
T ss_pred             CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence            455667775443222222  22344333211                      234444455544445444577776665


Q ss_pred             cceeecc
Q 001258          983 LECVKQW  989 (1113)
Q Consensus       983 ~~~~~~~  989 (1113)
                      .+.++..
T Consensus       316 ~~~l~~V  322 (410)
T PF04841_consen  316 HEFLQRV  322 (410)
T ss_pred             eEEEEEC
Confidence            5554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.48  E-value=4.4e-05  Score=83.71  Aligned_cols=159  Identities=14%  Similarity=0.223  Sum_probs=105.5

Q ss_pred             CCCCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCe
Q 001258          357 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  434 (1113)
                      ....+.|++++-+.+ -+++.|..+|.|.+-.+....--                 ..++..+|....++++|++ |...
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            445677777765443 58999999999999887543211                 1224567888999999999 7788


Q ss_pred             EEEEe----CCCeEEEEEccCC--ceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEee
Q 001258          435 FGVAY----SRHIVQIYSYHGG--DEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE  506 (1113)
Q Consensus       435 las~~----~d~~i~iwd~~~~--~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~  506 (1113)
                      ||.|-    .|..+.|||+.++  ..... ..+. +-.....+++|..+.+  ++.+|...+.++++|++.. .....+ 
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~-~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKES-PLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCccc-cccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence            88873    3667999999886  21111 1122 2445677999998888  7888888889999998732 111222 


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEE
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  539 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  539 (1113)
                       .+..+..+.+.|- .+.++++-. ||.|.+||
T Consensus       194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             -hhhhcccceecCC-CCCceeccc-cCceeecc
Confidence             1223333444442 224666655 99999999

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.44  E-value=0.12  Score=59.27  Aligned_cols=246  Identities=13%  Similarity=0.124  Sum_probs=123.9

Q ss_pred             cEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          361 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +...++||||++++++-+..|    +|+|.|+++|+.+.. .+                 ..  ..-..+.|.+|++.|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~~--~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------EN--PKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------EE--EESEEEEECTTSSEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------cc--cccceEEEeCCCCEEE
Confidence            346789999998666655555    499999999977653 11                 11  0122399999998877


Q ss_pred             EEeCC-----------CeEEEEEccCCceeeeeeeeecccCC--eeEEEEcCCCCeeEEEEecC-C-CcEEEEeCCCC--
Q 001258          437 VAYSR-----------HIVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGD-D-KTIKVWDATNG--  499 (1113)
Q Consensus       437 s~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~~~~~~~l~s~s~-d-~~i~iwd~~~~--  499 (1113)
                      ....+           ..|..|++.++..-. ...+.+....  ...+..++|++.+++.+.+. + ..+.+-|+..+  
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            66433           237788887764321 1134443333  67889999999633333332 2 35777887764  


Q ss_pred             --ceeeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccCCCeEEec
Q 001258          500 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       500 --~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                        .....+..+...+....-+. .+ .+++....   .+.|...++.....   ...+..+...                
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~----------------  326 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED----------------  326 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----------------
T ss_pred             CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----------------
Confidence              23334433333443322222 22 33333222   34565566655442   1122222111                


Q ss_pred             cccCceeEEEecCCCCEEEEE-ecC--CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC----CCcEEE
Q 001258          572 FRKRSLGVVQFDTTKNRFLAA-GDD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI  644 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~-~~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i  644 (1113)
                           .....+...+.+|+.. ..+  ..|+++++..+.....+.... ...|..+...+++..+.....    -+++..
T Consensus       327 -----~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~  400 (414)
T PF02897_consen  327 -----VSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR  400 (414)
T ss_dssp             -----EEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred             -----eeEEEEEEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence                 1111222223334443 233  358889988444444444432 223455555555554433221    246777


Q ss_pred             EEcCCCc
Q 001258          645 LATSDGI  651 (1113)
Q Consensus       645 wd~~~~~  651 (1113)
                      ||+.+++
T Consensus       401 ~d~~t~~  407 (414)
T PF02897_consen  401 YDLATGE  407 (414)
T ss_dssp             EETTTTC
T ss_pred             EECCCCC
Confidence            8888773

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.0094  Score=66.94  Aligned_cols=182  Identities=15%  Similarity=0.130  Sum_probs=103.1

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecC---CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      -...+..-+|+|+++.+....-..   ..+.++++++++.....+                 +.+   .-..-+|||||+
T Consensus       191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~~g---~~~~P~fspDG~  250 (425)
T COG0823         191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------FNG---NNGAPAFSPDGS  250 (425)
T ss_pred             cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------cCC---ccCCccCCCCCC
Confidence            556778889999999744443222   359999999887654321                 222   344579999999


Q ss_pred             eEEEEe-CCCe--EEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCceeeEeecc
Q 001258          434 LFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       434 ~las~~-~d~~--i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~~~h  508 (1113)
                      +||.+. .||.  |.+.|+.++...+    +..-.+.-..=.|+|||+. ++.+.+..|.  |.+.|++.+.. ..+...
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~  324 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRLTFS  324 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEeecc
Confidence            998764 4554  6666777766322    3333333346789999997 3444555555  55556555544 333222


Q ss_pred             CcCEEEEeeeecCCceEEEEEec-CCc--EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          509 EAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      .+.-..-.|  ++||.+++..+. +|.  |.+.|+.+...... -........-.+.++|+.
T Consensus       325 ~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~-lt~~~~~e~ps~~~ng~~  383 (425)
T COG0823         325 GGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGGKIRI-LTSTYLNESPSWAPNGRM  383 (425)
T ss_pred             CCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCCcEEE-ccccccCCCCCcCCCCce
Confidence            221112333  456677766664 344  55555555443221 122222334455666653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.16  Score=57.06  Aligned_cols=241  Identities=16%  Similarity=0.162  Sum_probs=155.4

Q ss_pred             CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ....+++.+++..+.+..  .+.+...+................-..+++++.+.+..+....+..|.+.|..+.+....
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~  111 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS  111 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence            456688888886666554  334555555421111111211134567788884444666666778999999887766655


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  972 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d  972 (1113)
                      ..--. ....++++++++.+..+..   ++++.+.|-.+......    ...+..     ...++++|+|..+++.  .+
T Consensus       112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~-----P~~~a~~p~g~~vyv~~~~~  181 (381)
T COG3391         112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT-----PTGVAVDPDGNKVYVTNSDD  181 (381)
T ss_pred             eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC-----cceEEECCCCCeEEEEecCC
Confidence            43222 5678999999987776665   57787887777544322    222322     2789999999988874  58


Q ss_pred             CeEEEEeCCccceeecccc---CCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258          973 TQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
                      +.+.+.|..+....+ ...   -.-......+.+++||.++++....   +.+.+.|..++.....-....       ..
T Consensus       182 ~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-------~~  253 (381)
T COG3391         182 NTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-------SG  253 (381)
T ss_pred             CeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-------cC
Confidence            899999987776653 110   0114456789999999987766554   589999999988876522111       11


Q ss_pred             ccceEEEEeCCCCCEEEEEeC-CCcEEEEeccCCC
Q 001258         1047 VHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESE 1080 (1113)
Q Consensus      1047 v~~i~~~~~p~d~~~l~s~~~-Dg~v~vW~~~~~~ 1080 (1113)
                       .+..+...| +|..+.+... .+.+.+-|-.+..
T Consensus       254 -~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         254 -APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             -CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence             233477778 6677666533 4788888877766

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.29  E-value=0.12  Score=55.53  Aligned_cols=233  Identities=11%  Similarity=0.132  Sum_probs=131.0

Q ss_pred             CCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCe
Q 001258          761 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  840 (1113)
Q Consensus       761 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~  840 (1113)
                      ..++.|+.|+++| +.+++....                     .....  .   .....|..+...++-+.+++-+|+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~---------------------~~~~~--i---~~~~~I~ql~vl~~~~~llvLsd~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP---------------------SKPTR--I---LKLSSITQLSVLPELNLLLVLSDGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC---------------------cccee--E---eecceEEEEEEecccCEEEEEcCCc
Confidence            4567789998888 788776210                     00000  0   0334489999999999999999999


Q ss_pred             EEEEECCCCceeeee--------------cCCCCCeeEEE--EecCCCcEEEEEecCCcEEEEEcccc-----eeeeeec
Q 001258          841 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK  899 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~la~g~~dg~v~iwd~~~~-----~~~~~l~  899 (1113)
                      +.++++.........              ......+...+  -...+..+|+++. ...|.+|.....     +..+++.
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence            999998765443311              11122344444  1122345555554 458888887652     3445554


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCC------CCCCCCCceEEEccCCcEEEEEcCC
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET  973 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~spdg~~l~~~~d~  973 (1113)
                       -.+.+.+++|.  ++.++.+..++ ..+.|+.++.....  .......      .....++..+. -+++.+|++ .+.
T Consensus       137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~-~~~  208 (275)
T PF00780_consen  137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLC-YDN  208 (275)
T ss_pred             -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEE-eCCceEEEE-ecc
Confidence             34778999998  56777776555 88899987544221  1111100      00001222222 234555554 333


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .-...|. .|+..+.... .-...+.++++  ...||++.+. +.|.||++.+++++..+.
T Consensus       209 ~g~fv~~-~G~~~r~~~i-~W~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  209 IGVFVNK-NGEPSRKSTI-QWSSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             eEEEEcC-CCCcCcccEE-EcCCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            3333343 3433221000 01335566666  3447777665 559999999999987765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.24  E-value=0.018  Score=67.77  Aligned_cols=188  Identities=12%  Similarity=0.057  Sum_probs=105.0

Q ss_pred             CCccEEEEecCCCEEEEEe-------CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--------
Q 001258          819 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------  881 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d--------  881 (1113)
                      ..+.+.+++|||+.++...       |+  .|.+++... .. +.+... ...+.-.|+| +|..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~g-~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLEG-HSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeecC-CCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3678899999999887654       32  466666532 22 333222 2378889999 77766665422        


Q ss_pred             ----CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCccccccccccCCCCCCCCCC
Q 001258          882 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS  954 (1113)
Q Consensus       882 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  954 (1113)
                          +.+.+.++..++...   ...+.|..+.|||||..++... ++.|++   -....++...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                233333444433322   2346799999999999988766 467777   343444311111111222111   23


Q ss_pred             CceEEEccCCcEEEEEcCC--eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258          955 DTRVQFHQDQIHFLVVHET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus       955 i~~~~~spdg~~l~~~~d~--~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
                      +..+.|..++.+++...+.  .+...++.... ...+.......++.+++=+++  -|+.+..+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            5788999999976554333  34444444222 222121123556777776653  355555566433

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.25  Score=49.89  Aligned_cols=208  Identities=13%  Similarity=0.060  Sum_probs=124.0

Q ss_pred             cEEEEecCCCE-EEEEe-CCe-EEEEECCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEecC-----CcEEEEEccc
Q 001258          822 PCFALSKNDSY-VMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  891 (1113)
Q Consensus       822 ~~l~~s~~~~~-l~~~s-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~  891 (1113)
                      ..++++|.-.. ++.+. -|+ ..+||..+.+.+.++......  --.=.||| ||.+|...-.|     |.|-|||...
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence            45777776554 44444 354 778999888777665433322  12236999 89888765433     6899999875


Q ss_pred             c-eeeeeecccccCeEEEEEcCCCCEEEEEeCC------------------CcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          892 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGAD------------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       892 ~-~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      + +.+.++..|.-.--.+.|.+||+.|+.+...                  -.+.+.|-.+++......+.....+    
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----  225 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----  225 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence            3 5667888888777889999999999987431                  0123333333333222211111111    


Q ss_pred             CCCceEEEccCCcEEEEE-cCC-----eEEEEeCCccceeeccccC-----CCCCCeeEEEECCCCCEEEEEeCC-CcEE
Q 001258          953 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1020 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~~-~d~-----~v~v~d~~~~~~~~~~~~~-----~h~~~v~~l~~s~dg~~l~s~~~D-g~v~ 1020 (1113)
                      .++..++..+||..++.+ ..|     --.+=-...++.+..+...     .-...|-+++...+..+++..+-. +...
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            367888888898877763 222     1111111222222222110     114467888888777776665544 5578


Q ss_pred             EEecCCCceeeecC
Q 001258         1021 VFSAANLKLRCRIN 1034 (1113)
Q Consensus      1021 vwd~~~~~~~~~~~ 1034 (1113)
                      +||.++|..+..-.
T Consensus       306 i~da~tG~vv~~a~  319 (366)
T COG3490         306 IWDAATGAVVSEAA  319 (366)
T ss_pred             EEEcCCCcEEeccc
Confidence            89999999885543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.12  E-value=0.013  Score=69.67  Aligned_cols=148  Identities=10%  Similarity=0.077  Sum_probs=95.2

Q ss_pred             CCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC-EEEEeeeecC-----CceEEEEEecCCcEEEEEcCCCCCeee-e
Q 001258          477 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHKE-----NIQFIFSTALDGKIKAWLYDNLGSRVD-Y  549 (1113)
Q Consensus       477 ~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~-~  549 (1113)
                      .+.++|........|+--|++.|+.+..+..|... |..++  +..     +....+.|-.++.+..||.+-...... -
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~  569 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS  569 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceEEeccCCCCCceeec
Confidence            33334555556788999999999999999887755 77766  321     123567788889999999986431111 0


Q ss_pred             eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC
Q 001258          550 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  629 (1113)
Q Consensus       550 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  629 (1113)
                      ..+.                 ......+.+++-+.+| ++++|+.+|.||+||--..+....+.+-  ..+|..+..+.|
T Consensus       570 ~~k~-----------------Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~l--G~pI~~iDvt~D  629 (794)
T PF08553_consen  570 QSKQ-----------------YSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGL--GDPIIGIDVTAD  629 (794)
T ss_pred             cccc-----------------cccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCC--CCCeeEEEecCC
Confidence            0100                 0111233333333333 3999999999999995333323333333  358999999999


Q ss_pred             CCEEEEEECCCcEEEEEc
Q 001258          630 GCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       630 ~~~l~~~~~dg~i~iwd~  647 (1113)
                      |+++++.+. ..+.+++.
T Consensus       630 GkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  630 GKWILATCK-TYLLLIDT  646 (794)
T ss_pred             CcEEEEeec-ceEEEEEE
Confidence            999887665 57777765

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.11  E-value=0.084  Score=62.17  Aligned_cols=147  Identities=14%  Similarity=0.066  Sum_probs=87.8

Q ss_pred             CCeeEEEEecCCCcEEEEEe------cCC--cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC--------
Q 001258          860 PAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--------  923 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D--------  923 (1113)
                      ..+...+++| +|+.+|...      .|+  .|.+++.. +.......+.  ..+.-.|+|||+.|++.+..        
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678899999 777766554      244  45555542 2222223332  37888999999988877533        


Q ss_pred             ----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE---EeCCccceeec-----ccc
Q 001258          924 ----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WVP  991 (1113)
Q Consensus       924 ----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v---~d~~~~~~~~~-----~~~  991 (1113)
                          +.+.+.+++.++...           .....|..+.|||||+.++...+++|.+   -....|. ...     +. 
T Consensus       426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~-  492 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG-  492 (591)
T ss_pred             cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee-
Confidence                122222333322110           0114689999999999999966788877   4544554 111     11 


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          992 RESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      .+-...+.++.|..++.++ ++..++...+|.+
T Consensus       493 ~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        493 PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             cccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence            1113346889999999965 5555555555554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.0021  Score=71.12  Aligned_cols=95  Identities=17%  Similarity=0.416  Sum_probs=72.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE-EEEEcCCCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~l  435 (1113)
                      -...|..+.|+|.-. |+|++..+|.|.+..+. .++       +|+            +.-|...++ +++|.|||+.|
T Consensus        19 l~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qR-------lwt------------ip~p~~~v~~sL~W~~DGkll   77 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQR-------LWT------------IPIPGENVTASLCWRPDGKLL   77 (665)
T ss_pred             cccceEEEEEcCccc-hhheeccCCcEEEEEec-cce-------eEe------------ccCCCCccceeeeecCCCCEE
Confidence            345778999999998 79999999999998877 333       333            233444565 99999999999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEc
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  474 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s  474 (1113)
                      |+|-.||+|++.|+.++..+...  ...-...|.++-|.
T Consensus        78 aVg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   78 AVGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            99999999999999998866531  12234567777775

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.09  E-value=0.2  Score=53.65  Aligned_cols=229  Identities=14%  Similarity=0.075  Sum_probs=131.3

Q ss_pred             EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeE
Q 001258          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV  444 (1113)
Q Consensus       365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i  444 (1113)
                      .|.+++..|+.+--..+.|.-|+..+++...                    +. +.+.+.++..-.++..|+++.  .-+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g~   87 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HGV   87 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--ccc
Confidence            4778888777777778999999998775432                    11 122334444444555555553  236


Q ss_pred             EEEEccCCceeeeeeeee-cc-cCCeeEEEEcCCCCeeEEEEecCC----------CcEEEEeCC-CCceeeEeeccCcC
Q 001258          445 QIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGDD----------KTIKVWDAT-NGAKQYIFEGHEAP  511 (1113)
Q Consensus       445 ~iwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~~~~~~~l~s~s~d----------~~i~iwd~~-~~~~~~~~~~h~~~  511 (1113)
                      .+++.+++..+....... +. ...-+.+...|+|.   +..+...          ..-.+|-+. .+..++.+..+-..
T Consensus        88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            777776665422222221 22 23567889999998   3333222          112455544 57777777766666


Q ss_pred             EEEEeeeecCCceEEEEE-ecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          512 VYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      -+.++|+++.  +.++.+ +..+.|.-|++.....    ..... ..         ........+..-.++.+.+|++.+
T Consensus       165 ~NGla~SpDg--~tly~aDT~~~~i~r~~~d~~~g----~~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~  228 (307)
T COG3386         165 PNGLAFSPDG--KTLYVADTPANRIHRYDLDPATG----PIGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWV  228 (307)
T ss_pred             cCceEECCCC--CEEEEEeCCCCeEEEEecCcccC----ccCCc-ce---------EEEccCCCCCCCceEEeCCCCEEE
Confidence            7888987655  455444 4567888887763100    00000 00         111111122333456667777665


Q ss_pred             EEecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258          591 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  638 (1113)
Q Consensus       591 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  638 (1113)
                      ++..+| .|.+|+.+ ++.+..+..+.  ..+++++|-- +.+.|++.+.
T Consensus       229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence            444443 99999998 99998888763  3578888864 4555554443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.15  Score=54.67  Aligned_cols=221  Identities=12%  Similarity=0.047  Sum_probs=124.6

Q ss_pred             EEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec--
Q 001258          824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--  899 (1113)
Q Consensus       824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~--  899 (1113)
                      ..|.++...|+-..  .+.|.-|+..+++. ..+. ....+.++..-. .+..|+++.  ..+++++..++..+..+.  
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~-~p~~~~~~~~~d-~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~  104 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-RVFP-SPGGFSSGALID-AGGRLIACE--HGVRLLDPDTGGKITLLAEP  104 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEE-CCCCcccceeec-CCCeEEEEc--cccEEEeccCCceeEEeccc
Confidence            35667777666665  68899999876543 2333 223334444433 333444332  346667766554422221  


Q ss_pred             --c-cccCeEEEEEcCCCCEEEEEeC-----C----CcEEEEeCCC-CccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          900 --G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       900 --~-h~~~V~~l~~s~d~~~L~s~s~-----D----~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                        + -..+.+.+...|+|.+.++...     .    ..-.+|-++. +..     .....++.   .....++||||++.
T Consensus       105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~t  176 (307)
T COG3386         105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKT  176 (307)
T ss_pred             cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCE
Confidence              1 1245677888999988886554     1    1123554442 111     11111111   13478999999988


Q ss_pred             EEEE--cCCeEEEEeCCc--cceee---ccccCCCCCCeeEEEECCCCCEEEEEeCCC-cEEEEecCCCceeeecCCCcc
Q 001258          967 FLVV--HETQLAIFETTK--LECVK---QWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus       967 l~~~--~d~~v~v~d~~~--~~~~~---~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
                      ++.+  ..+.|.-|++..  +....   ......+.+..-.++...+|.+-+++..+| .|.+|+.+ |+++..+..+. 
T Consensus       177 ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-  254 (307)
T COG3386         177 LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-  254 (307)
T ss_pred             EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-
Confidence            8875  457788777652  22111   111122356667788888898876555554 89999998 89988887332 


Q ss_pred             cCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258         1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus      1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                            ..++  +++|--.+.+.|...+.
T Consensus       255 ------~~~t--~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         255 ------KRPT--NPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ------CCCc--cceEeCCCcCEEEEEec
Confidence                  2233  36665444565544443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.06  E-value=0.037  Score=65.86  Aligned_cols=148  Identities=11%  Similarity=0.132  Sum_probs=97.7

Q ss_pred             CCcEEEEE-ecCCcEEEEEcccceeeeeecccccC-eEEEEEcC-----CCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258          871 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  943 (1113)
Q Consensus       871 d~~~la~g-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~  943 (1113)
                      +.++|..- .....|+-.|+..|+.+..+..|... |..++-..     +...-+.|=.+..+..||.+-...   .+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence            44454443 35578999999999999999988754 55554321     122344566677799999875321   1111


Q ss_pred             cCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       944 ~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                      .............+++-+.+|...+.+.+|.||+||.. |..-++..+ +-+.+|..|..+.||++|++.+ +..+.+++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            00111112235678888888877777899999999954 333333332 4578999999999999988766 67777877


Q ss_pred             c
Q 001258         1024 A 1024 (1113)
Q Consensus      1024 ~ 1024 (1113)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.00  E-value=0.19  Score=55.20  Aligned_cols=218  Identities=14%  Similarity=0.108  Sum_probs=119.0

Q ss_pred             CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----CCeEEEEeC----------CCeEEE
Q 001258          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLFGVAYS----------RHIVQI  446 (1113)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~las~~~----------d~~i~i  446 (1113)
                      ..|++.|..+.+.+....+.-               ..+-..+..+.|..+    ..+|++|..          .|.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~---------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP---------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET---------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCC---------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            357888888877776544321               111112334444433    567887743          288999


Q ss_pred             EEccCC----ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEee-ccCcCEEEEeeeec
Q 001258          447 YSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCPHHK  520 (1113)
Q Consensus       447 wd~~~~----~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~-~h~~~v~~~~~~~~  520 (1113)
                      +++...    ..++.... ....++|++++-- ++.  ++++.  .+.|.+|++...+ ....-. .....+.++...  
T Consensus        67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--  138 (321)
T ss_dssp             EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred             EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence            999984    23433322 2457889999876 343  33433  4789999998877 433222 223356666532  


Q ss_pred             CCceEEEEEecCCcEEEEEcCCCCC-eeee--eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258          521 ENIQFIFSTALDGKIKAWLYDNLGS-RVDY--EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1113)
Q Consensus       521 ~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~--~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1113)
                      .  ++++.|.....+.++.++.... ...+  ......+.++.                     +-++++.++++..+|.
T Consensus       139 ~--~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~---------------------~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  139 K--NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAE---------------------FLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             T--TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEE---------------------EE-SSSEEEEEETTSE
T ss_pred             c--cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEE---------------------EecCCcEEEEEcCCCe
Confidence            3  4899998888888876654222 1111  11222333333                     3323346888899999


Q ss_pred             EEEEECCC-------C--ceEEEEccCCCCCCcCeE---EECC--CC------CEEEEEECCCcEEEE
Q 001258          598 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKIL  645 (1113)
Q Consensus       598 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iw  645 (1113)
                      +.++....       +  +.......+-+ ..|+++   ++.|  .+      ..++.++.+|.|...
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            99887752       2  22222222222 245555   4455  12      248888899998854

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.00  E-value=0.13  Score=56.91  Aligned_cols=94  Identities=18%  Similarity=0.291  Sum_probs=62.5

Q ss_pred             EEEEcCCCCeEEEEeCCCeEEE---EEccC-C--ce---eeeeeeeeccc-CCeeEEEEcCC---C------CeeEEEEe
Q 001258          425 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSHP---N------KQLCVITC  485 (1113)
Q Consensus       425 ~l~~spdg~~las~~~d~~i~i---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~~---~------~~~~l~s~  485 (1113)
                      .++.+|++++||.+..+..+.+   |+... +  ..   +.-...+.... ..|+++.+-|-   .      ....++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4788999999999988877666   64421 1  11   11111222111 46777766442   1      12389999


Q ss_pred             cCCCcEEEEeCCCCceeeEeeccCcCEEEEeeee
Q 001258          486 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  519 (1113)
Q Consensus       486 s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  519 (1113)
                      ..+|.|++|. ++|..+..-.-|..+|..+....
T Consensus        86 ~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEe-ccchHHHHHhcCccceEEEEecc
Confidence            9999999999 68888877667899999887543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.96  E-value=0.32  Score=53.99  Aligned_cols=88  Identities=15%  Similarity=0.196  Sum_probs=56.8

Q ss_pred             EEEEecCCCEEEEEeCCeEEE----EECC-CC----ceeee----ecCCC-CCeeEEEEecC----------CCcEEEEE
Q 001258          823 CFALSKNDSYVMSASGGKISL----FNMM-TF----KTMAT----FMPPP-PAATFLAFHPQ----------DNNIIAIG  878 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~sdg~i~v----wd~~-~~----~~~~~----~~~~~-~~i~~l~~s~~----------d~~~la~g  878 (1113)
                      .++.+|++..||.+....+.+    |+.. .+    .....    +.... ..|+++.+-|-          |...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            578899999999998555333    4331 11    11111    12111 45777665442          46799999


Q ss_pred             ecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258          879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  911 (1113)
Q Consensus       879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  911 (1113)
                      ..+|.|++|.- +|.++..-.-|.++|..|.+.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence            99999999985 566665555577888877764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.94  E-value=0.2  Score=57.52  Aligned_cols=239  Identities=11%  Similarity=0.080  Sum_probs=126.3

Q ss_pred             ccEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEecC-----------C
Q 001258          821 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S  882 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~la~g~~d-----------g  882 (1113)
                      +....+||||+++|.+-  +|    +|+++|+.+++.+... ..  .....+.|.+ +++.|+....+           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence            34678999999999773  33    4999999999765432 21  1123499999 66655554422           2


Q ss_pred             cEEEEEcccceee--eeecccccC--eEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCc--cccccccccCCCCCCCC
Q 001258          883 SIQIYNVRVDEVK--SKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGWE--KQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       883 ~v~iwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~L~s~s~D----~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~  952 (1113)
                      .|+.|++.+...-  ..+......  ...+..++|+++|+..+..    ..+.+.++..+.  ......+.....     
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~-----  277 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED-----  277 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS-----
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC-----
Confidence            4788888765322  333333332  5688899999998754332    346777777641  111122211111     


Q ss_pred             CCCceEEEccCCcEEEEE----cCCeEEEEeCCccce---eeccccCCCCC--CeeEEEECCCCCE-EEEEeCCCc--EE
Q 001258          953 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQL-VYACFLDAT--VC 1020 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~~---~~~~~~~~h~~--~v~~l~~s~dg~~-l~s~~~Dg~--v~ 1020 (1113)
                       .+....-+..+.+++.+    .++.|...++.+...   ...+.  .|..  .+..+..  .+.+ ++....++.  |+
T Consensus       278 -~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  278 -GVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             -S-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred             -ceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence             22333333344444443    346777788877663   21232  3333  4555554  3444 444555544  88


Q ss_pred             EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC---CcEEEEeccCCC
Q 001258         1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1080 (1113)
Q Consensus      1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1080 (1113)
                      ++++..+.....+....      .+.|..  +...+....+.++.++-   ++++.+|+.+++
T Consensus       353 v~~~~~~~~~~~~~~p~------~g~v~~--~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  353 VYDLDDGKESREIPLPE------AGSVSG--VSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEETT-TEEEEEEESSS------SSEEEE--EES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEECCCCcEEeeecCCc------ceEEec--cCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            89998444444443111      122332  33334333344444332   578899999988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.91  E-value=0.28  Score=52.69  Aligned_cols=225  Identities=13%  Similarity=0.127  Sum_probs=123.4

Q ss_pred             ecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee---------
Q 001258          827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------  897 (1113)
Q Consensus       827 s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~---------  897 (1113)
                      ...++.|+.|.++.|.++++.......... +...|..+...+ +-+.|++-+ |+.++++++..-.....         
T Consensus         4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            346788999985449999993322222222 223399999998 555555443 59999999876433321         


Q ss_pred             -----ecccccCeEEEE--EcCC-CCEEEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          898 -----LKGHSKRITGLA--FSHA-LNVLVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       898 -----l~~h~~~V~~l~--~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                           .......+...+  -... ...|+.+ ..++|.+|......... .......-     +..+..++|.  +..++
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-----p~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-----PDPPSSIAFL--GNKIC  152 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-----CCCcEEEEEe--CCEEE
Confidence                 111223344444  1123 3445544 45589998887642211 11111111     1356888888  66777


Q ss_pred             EEcCCeEEEEeCCccceeeccccCCC----------CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceee--ecCCC
Q 001258          969 VVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPS 1036 (1113)
Q Consensus       969 ~~~d~~v~v~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~--~~~~~ 1036 (1113)
                      ++..+...+.|+.++.....+.....          ..++..+... ++.+|++-  |..-..-|. .|+...  .+.  
T Consensus       153 v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~--  226 (275)
T PF00780_consen  153 VGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ--  226 (275)
T ss_pred             EEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE--
Confidence            77788899999997766544432111          1234444443 46777653  333333343 343332  111  


Q ss_pred             cccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1037 AYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1037 ~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                            -...+.  .+.+..   .+|+..+. +.|.||++.+++
T Consensus       227 ------W~~~p~--~~~~~~---pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  227 ------WSSAPQ--SVAYSS---PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             ------cCCchh--EEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence                  112222  355543   36666554 559999999998

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.89  E-value=0.2  Score=50.53  Aligned_cols=210  Identities=12%  Similarity=0.107  Sum_probs=117.8

Q ss_pred             eeEEEEecCCCcEEEEEecCCc-EEEEEcccceeeeeecccccC--eEEEEEcCCCCEEEEEeCC-----CcEEEEeCCC
Q 001258          862 ATFLAFHPQDNNIIAIGMDDSS-IQIYNVRVDEVKSKLKGHSKR--ITGLAFSHALNVLVSSGAD-----SQLCVWSSDG  933 (1113)
Q Consensus       862 i~~l~~s~~d~~~la~g~~dg~-v~iwd~~~~~~~~~l~~h~~~--V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~  933 (1113)
                      ...++|+|.-.+-++.+-.-|+ ..++|....+....+...+++  .-.=.|||||.+|...-.|     |.|-|||...
T Consensus        70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc
Confidence            3456666644555555655553 457787776555444322111  1123699999999866443     7799999885


Q ss_pred             CccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcC-------------------CeEEEEeCCccceeeccccC--
Q 001258          934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-------------------TQLAIFETTKLECVKQWVPR--  992 (1113)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d-------------------~~v~v~d~~~~~~~~~~~~~--  992 (1113)
                      +-....    ....+.   .....+.+.+||+.+++...                   -.+.+.|..+|+.+.+....  
T Consensus       150 ~fqrvg----E~~t~G---iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~  222 (366)
T COG3490         150 GFQRVG----EFSTHG---IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPAS  222 (366)
T ss_pred             ccceec----ccccCC---cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchh
Confidence            322111    111111   24478899999999998422                   14666777788877665543  


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258          993 ESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus       993 ~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                      -+...|..++..+||+.++.+-..|-     --|=-...++.+.-+...+.....-..-|-+  ++-+-.++-..+|.-.
T Consensus       223 l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigs--iA~n~~~glV~lTSP~  300 (366)
T COG3490         223 LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGS--IAANRRDGLVALTSPR  300 (366)
T ss_pred             hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhh--eeecccCCeEEEecCC
Confidence            45667889999999987765543221     1111112233332222111111111222333  4444435544555555


Q ss_pred             CCcEEEEeccCCC
Q 001258         1068 DGGVHVFEPLESE 1080 (1113)
Q Consensus      1068 Dg~v~vW~~~~~~ 1080 (1113)
                      -+...+||..+|+
T Consensus       301 GN~~vi~da~tG~  313 (366)
T COG3490         301 GNRAVIWDAATGA  313 (366)
T ss_pred             CCeEEEEEcCCCc
Confidence            6678899999998

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.0049  Score=68.40  Aligned_cols=94  Identities=10%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001258          859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  937 (1113)
Q Consensus       859 ~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~  937 (1113)
                      ...+..+.|+| .-.++|++..+|.|.++.+. .+.+.++.-|...++ +++|.|||+.||.|-.||+|++.|+.++...
T Consensus        20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence            34578899999 88899999999999999988 777888887888888 9999999999999999999999999997765


Q ss_pred             cccccccCCCCCCCCCCCceEEEc
Q 001258          938 KNRFLQIPTGRTPTAQSDTRVQFH  961 (1113)
Q Consensus       938 ~~~~~~~~~~~~~~~~~i~~~~~s  961 (1113)
                      ........       ..|.++-|+
T Consensus        98 ~~~~~s~e-------~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVE-------TDISKGIWD  114 (665)
T ss_pred             eccccccc-------cchheeecc
Confidence            44322211       245666665

>smart00320 WD40 WD40 repeats

Probab=96.83  E-value=0.003  Score=43.35  Aligned_cols=39  Identities=33%  Similarity=0.559  Sum_probs=34.6

Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      ++....+..|...|+++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.77  E-value=1.3  Score=49.38  Aligned_cols=282  Identities=11%  Similarity=0.063  Sum_probs=150.0

Q ss_pred             CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-----CCCEEEEEe
Q 001258          763 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS  837 (1113)
Q Consensus       763 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-----~~~~l~~~s  837 (1113)
                      ...|++|+..|.++||+.....+.+....+...                     -..+|..+..-.     +...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~---------------------l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ---------------------LKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEe---------------------cCCcEEEEEeccccCCCCcceEEEec
Confidence            457899999999999988654444332221111                     244555554331     334566656


Q ss_pred             CCeEEEEECCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCcEEEEEecCCcEEEEEcccceeeeeecccc
Q 001258          838 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  902 (1113)
Q Consensus       838 dg~i~vwd~~~--~~-------~~~~~~~~~~--~i~~l~~s~~----d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~  902 (1113)
                      -..+.||.+..  +.       .+.....|.-  ....+++-|-    +..++.+-+-||.+.+|+-+.......+.+ .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            77777877631  11       1111111221  1222333221    236889999999999999776544444443 3


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc-------cccCCCCC----------CCCCCCceEEEccCCc
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRT----------PTAQSDTRVQFHQDQI  965 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~-------~~~~~~~~----------~~~~~i~~~~~spdg~  965 (1113)
                      --...++|.+.-..+++++.+..|.-|....-.......       .....+..          ...-.+..+.++....
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~  254 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES  254 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence            334457888888899999999889888753210000000       00000000          0001122233333334


Q ss_pred             EEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEE-E----CCCC---CEEEEEeCCCcEEEEecCCCceeeecCCCc
Q 001258          966 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDS---QLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus       966 ~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~-~----s~dg---~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
                      .+++-.++.+.+.+.. |........+.   ...|++ |    ..++   ..++.++.++++.||.=.+..--+++.   
T Consensus       255 ~IvvLger~Lf~l~~~-G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~---  327 (418)
T PF14727_consen  255 DIVVLGERSLFCLKDN-GSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP---  327 (418)
T ss_pred             eEEEEecceEEEEcCC-CeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC---
Confidence            4555456666666653 44433333222   222222 1    1222   248888999999999865544443331   


Q ss_pred             ccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1038 YLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1038 ~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                             ...-.+.++..+.-...|++-+.+|.|.+-=+-|.-
T Consensus       328 -------~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdP  363 (418)
T PF14727_consen  328 -------HVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTDP  363 (418)
T ss_pred             -------CCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCCC
Confidence                   112233444444445589999999999987766644

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.026  Score=61.52  Aligned_cols=206  Identities=12%  Similarity=0.143  Sum_probs=115.8

Q ss_pred             CcceEEEEEcC-CCCeEEEEeCC------CeEEEEEccCCceeee----eeeeecccCCeeEEEEcCCCCeeEEEEecCC
Q 001258          420 GVSVNRVIWSP-DGSLFGVAYSR------HIVQIYSYHGGDEVRQ----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDD  488 (1113)
Q Consensus       420 ~~~V~~l~~sp-dg~~las~~~d------~~i~iwd~~~~~~~~~----~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d  488 (1113)
                      .+.|.++++.. +.++|+.+...      ..|-|+.-..|-+++.    .....+|+-.-.-+-.......+++.++...
T Consensus       276 ~~~i~sl~~~a~~NS~Lvv~~~ns~V~Rn~~iGVfk~ekgl~f~~~i~n~s~~~g~S~~P~K~mL~~~dsnlil~~~~~~  355 (644)
T KOG2395|consen  276 EGGIGSLDEGALDNSFLVVGYGNSYVTRNNRIGVFKNEKGLEFKAAIKNVSDGDGKSIDPHKAMLHRADSNLILMDGGEQ  355 (644)
T ss_pred             hcccchhhhcccCCceEEecccceEEEecceeeeeccCCceEEEeccCcccCCCccccCcchhhhhccccceEeeCCCCc
Confidence            35577777775 66677776542      2333443322222110    0011122211111112222334467777778


Q ss_pred             CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEE-----EEEecCCcEEEEEcCCCCC-eeee-eCCCCceEEEEE
Q 001258          489 KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGS-RVDY-EAPGRWCTTMAY  561 (1113)
Q Consensus       489 ~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~~~dg~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~  561 (1113)
                      ..++--|++.|+.+..+.-|.. |.-+.+.+...+..+     +.|-.|..|.-||.+-... .... ..+.       +
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq-------y  427 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ-------Y  427 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc-------c
Confidence            8899999999999999987766 666666565544433     3455688899999874332 1111 0000       0


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                      +          ....+.|.+-..+ .++++|+.+|.|++||--..+....+.+-+  .+|..+..+.+|+++++.+. ..
T Consensus       428 ~----------~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG--~~I~hVdvtadGKwil~Tc~-ty  493 (644)
T KOG2395|consen  428 S----------TKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLG--DAIKHVDVTADGKWILATCK-TY  493 (644)
T ss_pred             c----------cccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccC--CceeeEEeeccCcEEEEecc-cE
Confidence            0          0112222222222 259999999999999973333333444443  47999999999998876654 56


Q ss_pred             EEEEEc
Q 001258          642 IKILAT  647 (1113)
Q Consensus       642 i~iwd~  647 (1113)
                      +.+.++
T Consensus       494 LlLi~t  499 (644)
T KOG2395|consen  494 LLLIDT  499 (644)
T ss_pred             EEEEEE
Confidence            666654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.59  E-value=0.08  Score=58.24  Aligned_cols=179  Identities=12%  Similarity=0.169  Sum_probs=101.1

Q ss_pred             CCEEEEEe---C--------CeEEEEECCCC----ceeeee--cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          830 DSYVMSAS---G--------GKISLFNMMTF----KTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       830 ~~~l~~~s---d--------g~i~vwd~~~~----~~~~~~--~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      ..++++|.   .        |.|.++++...    ..+..+  ....++|++++--  +++ |+++. .+.|++|++...
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~-lv~~~-g~~l~v~~l~~~  117 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGR-LVVAV-GNKLYVYDLDNS  117 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTE-EEEEE-TTEEEEEEEETT
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCE-EEEee-cCEEEEEEccCc
Confidence            46777774   1        77999999873    122211  2235678888776  344 44443 578999999887


Q ss_pred             e-eeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          893 E-VKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       893 ~-~~~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      + ....-.- ....++++...  +++++.|+....+.++.++.....   .........  ...++++.|-+|+..++++
T Consensus       118 ~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~---l~~va~d~~--~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  118 KTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNK---LILVARDYQ--PRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             SSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE----EEEEEEESS---BEEEEEEEE-SSSEEEEE
T ss_pred             ccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCE---EEEEEecCC--CccEEEEEEecCCcEEEEE
Confidence            7 4432221 22356666554  569999998888888866542110   111111111  1357788888666555554


Q ss_pred             -cCCeEEEEeCCc-------c----ceeeccccCCCCCCeeEE---EECCC--CC------EEEEEeCCCcEEEE
Q 001258          971 -HETQLAIFETTK-------L----ECVKQWVPRESSAPITHA---TFSCD--SQ------LVYACFLDATVCVF 1022 (1113)
Q Consensus       971 -~d~~v~v~d~~~-------~----~~~~~~~~~~h~~~v~~l---~~s~d--g~------~l~s~~~Dg~v~vw 1022 (1113)
                       .+|.+.++....       +    .....+.   ....|+++   ++.|.  +.      .++.++.+|.|.+.
T Consensus       191 D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~---lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  191 DKDGNLFVLRYNPEIPNSRDGDPKLERISSFH---LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             ETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cCCCeEEEEEECCCCcccccccccceeEEEEE---CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             789999887752       1    1222332   25677777   65552  22      37788889998843

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.058  Score=64.05  Aligned_cols=100  Identities=18%  Similarity=0.246  Sum_probs=71.0

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~  452 (1113)
                      +++.|+..|.|...|+...-...     .|             -..-.++|++++|+.||++++.|-.+|.|.+||+..+
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~-----~~-------------ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~  162 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPL-----HQ-------------NERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA  162 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchh-----hc-------------CCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence            58889989999988886531100     00             1123569999999999999999999999999999998


Q ss_pred             ceeeeeeeeecccCC---eeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          453 DEVRQHLEIDAHVGG---VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       453 ~~~~~~~~l~~h~~~---V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      +.++.   +..|..+   |..+.+..++.  .++++...|.  +|.+.
T Consensus       163 k~l~~---i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  163 KILKV---ITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceee---eeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence            87763   4444443   44445555555  5778777776  66643

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.50  E-value=3.3  Score=50.53  Aligned_cols=214  Identities=14%  Similarity=0.075  Sum_probs=114.5

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccC------CeeEEEEc----------------CCCCeeEEEEecCCC
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFS----------------HPNKQLCVITCGDDK  489 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~------~V~~v~~s----------------~~~~~~~l~s~s~d~  489 (1113)
                      +..|..++.++.|.-.|..+|+.+-.... .....      ....+++-                ..+.  .++.++.|+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence            55666666777788888888876653211 10000      01112221                1233  467788899


Q ss_pred             cEEEEeCCCCceeeEeeccCcCEE-------------EEeeeecCCceEEEEEec----------CCcEEEEEcCCCCCe
Q 001258          490 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR  546 (1113)
Q Consensus       490 ~i~iwd~~~~~~~~~~~~h~~~v~-------------~~~~~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~  546 (1113)
                      .+.-.|.++|+.+..+.. .+.|.             .+.-.|.-.+..++.|+.          +|.|+-+|.++++.+
T Consensus       271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            999999999999876632 22211             000001101135666643          688999999999988


Q ss_pred             eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe------------------cCCcEEEEECCCCce
Q 001258          547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------------------DDFSIKFWDMDSVQL  608 (1113)
Q Consensus       547 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~  608 (1113)
                      ..+..........  .+.+. .+.......-...++++....++.+.                  ..+.|.-.|.++|+.
T Consensus       350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            8765321111100  01121 12111111222334444433333311                  245677788899988


Q ss_pred             EEEEccCCCC-------CCcCeEEECC-CCC---EEEEEECCCcEEEEEcCCCcc
Q 001258          609 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       609 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                      ...++...|.       ....-+.+.. +|+   .++.++.+|.+.++|..+|+.
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~  481 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEP  481 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCE
Confidence            8777642221       0111122322 553   799999999999999999943

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.48  E-value=0.29  Score=54.69  Aligned_cols=159  Identities=13%  Similarity=0.167  Sum_probs=90.2

Q ss_pred             CCeeEEEEecCCCcEEEEEe--cCCcEEEEEcccceeeeeecccccCeEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001258          860 PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      .++..++|.. +.+.+.+.-  .+|.+++=|   .+.+..|    ..|.+++|.|-    ...|...-.-..|.+|-+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4678899984 444444432  344444432   2334444    45899999985    33455566677899999874


Q ss_pred             Ccccccccc--ccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEE
Q 001258          934 WEKQKNRFL--QIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV 1010 (1113)
Q Consensus       934 ~~~~~~~~~--~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l 1010 (1113)
                      ........+  +.-+-..+-+.-...+.|+|....|++ ..+..-.++++......-.... ...+.|.|.||..||..|
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RL  170 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRL  170 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEE
Confidence            322222221  111111111123367899999998888 4333333445433322111111 226789999999999987


Q ss_pred             EEEe-CCCcEEEEecCCC
Q 001258         1011 YACF-LDATVCVFSAANL 1027 (1113)
Q Consensus      1011 ~s~~-~Dg~v~vwd~~~~ 1027 (1113)
                      +++- ..=.-++||-...
T Consensus       171 VVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  171 VVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEEeCCeEEEEEecCchh
Confidence            6553 3344789986544

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.33  E-value=1.7  Score=47.82  Aligned_cols=111  Identities=21%  Similarity=0.270  Sum_probs=58.6

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----CCeE
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF  435 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l  435 (1113)
                      ..++|+|.|||+ +++ +...|.|.+++ ..+....  .+  -++        ..+..........++|+|+    +.+.
T Consensus         3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~--~v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKT--PV--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECE--EE--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcc--ee--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence            468999999998 455 46699999999 4444311  01  000        0134455668899999994    4444


Q ss_pred             EEEeCC--------CeEEEEEccCC-cee---eeee-eeec---ccCCeeEEEEcCCCCeeEEEEec
Q 001258          436 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EIDA---HVGGVNDIAFSHPNKQLCVITCG  486 (1113)
Q Consensus       436 as~~~d--------~~i~iwd~~~~-~~~---~~~~-~l~~---h~~~V~~v~~s~~~~~~~l~s~s  486 (1113)
                      ++.+..        ..|.-|.+..+ ..+   +.+. .+..   ....-..|+|.|||. +++.+|+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~  133 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD  133 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence            443321        24555555544 111   1111 1111   233456799999995 3544544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.055  Score=64.24  Aligned_cols=105  Identities=17%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      .+..++.|+..|.|-..|+.+.  +++...-..-.++|++++|+.+|+  .++.|-.+|.|.+||+..++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4667899999999999888764  221111123456999999999999  788899999999999999999999998888


Q ss_pred             CEEEEeeeec-CCceEEEEEecCCcEEEEEcC
Q 001258          511 PVYSVCPHHK-ENIQFIFSTALDGKIKAWLYD  541 (1113)
Q Consensus       511 ~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~  541 (1113)
                      +.+.+-++.. ..+..++++...|.  +|.+.
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            8777654332 23346788777776  56543

>PRK10115 protease 2; Provisional

Probab=96.27  E-value=2.2  Score=52.04  Aligned_cols=196  Identities=9%  Similarity=0.019  Sum_probs=101.4

Q ss_pred             CCccEEEEecCCCEEEEEeC--C----eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC------CcEEE
Q 001258          819 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI  886 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sd--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d------g~v~i  886 (1113)
                      -.+..+.+||||++|+.+.|  |    .|++.|+.++..+...-...  -..++|++ |++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999999998863  2    48999998876432221111  14699999 66555544332      36888


Q ss_pred             EEcccc--eeeeeecccccCeE-EEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258          887 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  960 (1113)
Q Consensus       887 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  960 (1113)
                      +++.++  +....+........ .+..+.|+++++..+.   ++.+.+|+....... ...+.....     .....+. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~-----~~~~~~~-  276 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAE-PFVFLPRRK-----DHEYSLD-  276 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCC-ceEEEECCC-----CCEEEEE-
Confidence            888877  33333433223333 3344558887665443   456888885331111 111111111     1112222 


Q ss_pred             ccCCcEEEEEcC----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258          961 HQDQIHFLVVHE----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       961 spdg~~l~~~~d----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      +..+.+++....    ..|...++.+......+....-...|..+.++ .+.++++...+|.-+++-++
T Consensus       277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            223333333321    23444455421111222221113478888887 34566677777775555443

>smart00320 WD40 WD40 repeats

Probab=96.27  E-value=0.012  Score=40.21  Aligned_cols=34  Identities=41%  Similarity=0.757  Sum_probs=30.9

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      .+..|...|.++.|.+++.  ++++++.|+.+++|+
T Consensus         7 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~   40 (40)
T smart00320        7 TLKGHTGPVTSVAFSPDGK--YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEecCCceeEEEECCCCC--EEEEecCCCeEEEcC
Confidence            5678999999999999987  799999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.21  E-value=0.74  Score=48.28  Aligned_cols=145  Identities=13%  Similarity=0.064  Sum_probs=90.0

Q ss_pred             CCccEEEEecCCCEEEEEe--CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE-cccce
Q 001258          819 EAVPCFALSKNDSYVMSAS--GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDE  893 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd-~~~~~  893 (1113)
                      ..+.+.+++++++.++...  ++  .++++...  ....... ....++.-.|++ ++.+.+....+...+++. ..+++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence            3688999999999887765  44  45555543  3333322 223688889999 687777777777777774 33332


Q ss_pred             ee-eeeccc--ccCeEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccc-c---ccccccCCCCCCCCCCCceEEEccC
Q 001258          894 VK-SKLKGH--SKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ-K---NRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       894 ~~-~~l~~h--~~~V~~l~~s~d~~~L~s~s---~D~~v~iwd~~~~~~~-~---~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      .. ..+...  .+.|+++.+||||..++...   .++.|.+=-+...... .   .........   ....+..+.|.++
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~  176 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDD  176 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCC
Confidence            22 112111  12899999999999988665   3567777765543322 1   111111111   1246789999999


Q ss_pred             CcEEEEE
Q 001258          964 QIHFLVV  970 (1113)
Q Consensus       964 g~~l~~~  970 (1113)
                      +.+++.+
T Consensus       177 ~~L~V~~  183 (253)
T PF10647_consen  177 STLVVLG  183 (253)
T ss_pred             CEEEEEe
Confidence            9988874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.20  E-value=0.29  Score=42.42  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=65.3

Q ss_pred             eEEEEEcC---CC-CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          423 VNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       423 V~~l~~sp---dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      |++|++..   || ..|++|+.|..|+||+-..  .+.   ++. ..+.|++++-...++   |+.+-.+|+|-+|+-  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~--   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR--   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence            56666655   32 5799999999999998553  333   333 345788888777754   899999999999973  


Q ss_pred             CceeeEeeccCcCEEEEee-eecCCc-eEEEEEecCCcEE
Q 001258          499 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK  536 (1113)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~-~~~~~~-~~l~s~~~dg~i~  536 (1113)
                      ...+...+.. ..+.++++ ....+| .-|++|=.+|.|-
T Consensus        71 ~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2233333322 23555543 333333 3577887777663

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.084  Score=57.73  Aligned_cols=144  Identities=10%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             EEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCccccccccccCC
Q 001258          874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV-------LVSSGADSQLCVWSSDGWEKQKNRFLQIPT  946 (1113)
Q Consensus       874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~-------L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~  946 (1113)
                      +|..+..-..++-.|+..|+.+..+.-|.+ |+-+.+.|+.+.       =+.|=.|..|.-||.+-....   .+...+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence            344455556788889999999999998877 788888887532       123445777999998743221   122222


Q ss_pred             CCCC-CCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          947 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       947 ~~~~-~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      ++.- ....-.|.+-..+|..++.+.+|.|++||. .+..-.+..+ +-..+|..+..+.||++|++.+ +.++.+-++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            2211 112345666666776666689999999998 4544444332 5588999999999999988665 666766665

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.14  E-value=0.017  Score=56.18  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=72.7

Q ss_pred             CCEEEEEe-CCeEEEEECCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCeE
Q 001258          830 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT  906 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~  906 (1113)
                      +.-+++|. +|.|.+|..... .....+......|.+..-.-+++.+..+++.||.|+.|++..++.+.....|. .++.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34555665 999999987622 22222222233444444333366789999999999999999999888888887 6666


Q ss_pred             EEEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001258          907 GLAFSHALNVLVSS--GADSQLCVWSSDG  933 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~--s~D~~v~iwd~~~  933 (1113)
                      .+..+..+++++++  |.|..++.|++..
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            66666677777777  7788888888765

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.14  E-value=0.28  Score=42.54  Aligned_cols=102  Identities=19%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             EEEEeeee-cCCc-eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          512 VYSVCPHH-KENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       512 v~~~~~~~-~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      |+++++.. +.+| +.|+.|+.|..|++|+-+  +....+. ....+.+++....+                      .+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~~----------------------~F   56 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGGG----------------------RF   56 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCCC----------------------EE
Confidence            56666543 2222 579999999999999644  2333322 33445555555444                      38


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC---CC-CEEEEEECCCcEE
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DG-CLLAVSTNDNGIK  643 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~-~~l~~~~~dg~i~  643 (1113)
                      +.+-.+|+|-+|+-.  ..+...+...   .+.++.+..   || .-|++|-.+|.|-
T Consensus        57 ~Y~l~NGTVGvY~~~--~RlWRiKSK~---~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   57 AYALANGTVGVYDRS--QRLWRIKSKN---QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEecCCEEEEEeCc--ceeeeeccCC---CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            888899999999853  3333443322   355665544   22 3688888888774

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.13  E-value=1.1  Score=47.59  Aligned_cols=159  Identities=11%  Similarity=0.072  Sum_probs=79.7

Q ss_pred             cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC-CCC
Q 001258          856 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS-DGW  934 (1113)
Q Consensus       856 ~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~-~~~  934 (1113)
                      ......+..+..++ ||++++++..-....-||--...-...-+.-+.+|.++.|+||+.+.+.+ ..|.|+.=+. ...
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            33456788888888 89999888655555567643211112223356889999999998776644 8888887762 111


Q ss_pred             ccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccc-cCCCCCCeeEEEECCCCCEEEEE
Q 001258          935 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       935 ~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                      +.-..........    .-.+..++|.+++...+++..+.+. ...+.|+.=..-. ...-...++.+.|.++.+-++. 
T Consensus       219 ~~w~~~~~~~~~~----~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-  292 (302)
T PF14870_consen  219 ETWSEPIIPIKTN----GYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-  292 (302)
T ss_dssp             EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             cccccccCCcccC----ceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence            1100000111011    1246888999999988888877554 3444444322221 1122556889999876555554 


Q ss_pred             eCCCcEEEE
Q 001258         1014 FLDATVCVF 1022 (1113)
Q Consensus      1014 ~~Dg~v~vw 1022 (1113)
                      +.||.+--|
T Consensus       293 G~~G~ll~~  301 (302)
T PF14870_consen  293 GQDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             CCCcEEEEe
Confidence            468876544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.05  E-value=1.4  Score=45.29  Aligned_cols=185  Identities=8%  Similarity=0.111  Sum_probs=112.9

Q ss_pred             ccEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          821 VPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ...+.|..+|.++-+.+ -  ..|+.+|+.+++......-... ---.++..  ++++....-.++...+||..+.+.+.
T Consensus        47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEE
Confidence            45678877887777766 3  4699999999987765443222 22344444  45677777789999999999998888


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeE
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQL  975 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v  975 (1113)
                      ++.- .+.=+.|+  .|++.|+..+....++++|..+.+....  +.+..... ....+..+-+- +|...|-. ....|
T Consensus       125 ~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~-pv~~LNELE~i-~G~IyANVW~td~I  197 (264)
T PF05096_consen  125 TFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGR-PVSNLNELEYI-NGKIYANVWQTDRI  197 (264)
T ss_dssp             EEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTE-E---EEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCE-ECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence            8864 45667787  4677777776677799999877554332  22221111 01233445554 56555544 66778


Q ss_pred             EEEeCCccceeeccccC----------CC---CCCeeEEEECCCCCEEEEEe
Q 001258          976 AIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       976 ~v~d~~~~~~~~~~~~~----------~h---~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      ...|..+|+++..+...          .+   ..-.+.||+.|+...++..+
T Consensus       198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88899999887654210          01   34578999988776655444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PHA02713 hypothetical protein; Provisional

Probab=95.93  E-value=0.44  Score=56.53  Aligned_cols=198  Identities=12%  Similarity=0.084  Sum_probs=102.9

Q ss_pred             CCcEEEEEecC------CcEEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccc
Q 001258          871 DNNIIAIGMDD------SSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQ  937 (1113)
Q Consensus       871 d~~~la~g~~d------g~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~  937 (1113)
                      ++.+.++|+.+      ..+..||..+..  .+..+.........++  -+|+..+.||.++     ++..||..+.+  
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~~--  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDDK--  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCCe--
Confidence            67788888854      347788877653  2222221111222222  3678888888764     47888887642  


Q ss_pred             ccccccc-CCCCCCCCCCCceEEEccCCcEEEEE-cC-----------------------CeEEEEeCCccceeeccccC
Q 001258          938 KNRFLQI-PTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------------------TQLAIFETTKLECVKQWVPR  992 (1113)
Q Consensus       938 ~~~~~~~-~~~~~~~~~~i~~~~~spdg~~l~~~-~d-----------------------~~v~v~d~~~~~~~~~~~~~  992 (1113)
                       +..... +....      ...+..-+|+..++| .+                       ..+..||..+.+....-.. 
T Consensus       379 -W~~~~~mp~~r~------~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-  450 (557)
T PHA02713        379 -WKMLPDMPIALS------SYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-  450 (557)
T ss_pred             -EEECCCCCcccc------cccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-
Confidence             221111 11111      111223366666664 32                       2477888877655322211 


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCC------CcEEEEecCC-CceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          993 ESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       993 ~h~~~v~~l~~s~dg~~l~s~~~D------g~v~vwd~~~-~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      . ......-+..-+|+..+.|+.+      ..|..||..+ .+-...-.    ++.. ... ..  ++-.  +|.+.++|
T Consensus       451 ~-~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~-r~~-~~--~~~~--~~~iyv~G  519 (557)
T PHA02713        451 W-TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR-LSA-LH--TILH--DNTIMMLH  519 (557)
T ss_pred             C-cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc-ccc-ce--eEEE--CCEEEEEe
Confidence            0 1111111223356766677654      2467888887 44332111    1111 111 11  2222  67899999


Q ss_pred             eCCC--cEEEEeccCCCccccCCCCCCCCC
Q 001258         1066 LSDG--GVHVFEPLESEGKWGVPPPVDNGS 1093 (1113)
Q Consensus      1066 ~~Dg--~v~vW~~~~~~~~~~~~~~~~~~~ 1093 (1113)
                      +.||  ++..+|+.+.+  |..-+|-...+
T Consensus       520 g~~~~~~~e~yd~~~~~--W~~~~~~~~~~  547 (557)
T PHA02713        520 CYESYMLQDTFNVYTYE--WNHICHQHSNS  547 (557)
T ss_pred             eecceeehhhcCccccc--ccchhhhcCCc
Confidence            9998  78888888866  77766654433

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.83  E-value=1.5  Score=48.25  Aligned_cols=241  Identities=13%  Similarity=0.097  Sum_probs=116.3

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCce---eeee----cCCCCCeeEEEEecC---CCcEEEEEecC--------
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD--------  881 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~la~g~~d--------  881 (1113)
                      ..++|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999988877799999999 33332   2222    223456789999982   24444444321        


Q ss_pred             CcEEEEEcccc-------eee-eeecc---cccCeEEEEEcCCCCEEEEEeCCCc-----------EEEEeCCCC-cccc
Q 001258          882 SSIQIYNVRVD-------EVK-SKLKG---HSKRITGLAFSHALNVLVSSGADSQ-----------LCVWSSDGW-EKQK  938 (1113)
Q Consensus       882 g~v~iwd~~~~-------~~~-~~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~-----------v~iwd~~~~-~~~~  938 (1113)
                      ..|.-|....+       +.+ ..+..   ..-.-..|+|.|||.+.++.+..+.           =+|+.+... ....
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~  161 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA  161 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence            23444444322       111 12222   1223456999999988887765543           112222111 0000


Q ss_pred             ccccc---------cCCCCCCCCCCCceEEEccC-CcEEEE--EcCCeEEEEeCCcccee--------------------
Q 001258          939 NRFLQ---------IPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV--------------------  986 (1113)
Q Consensus       939 ~~~~~---------~~~~~~~~~~~i~~~~~spd-g~~l~~--~~d~~v~v~d~~~~~~~--------------------  986 (1113)
                      .....         ...+.    .....++|+|. |.+.++  +.+..=.|.-+..|.-.                    
T Consensus       162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            00000         00011    12367899999 777776  44443333222222110                    


Q ss_pred             -------eccccCCCCCCeeEEEECC-------CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEE
Q 001258          987 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVI 1052 (1113)
Q Consensus       987 -------~~~~~~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~ 1052 (1113)
                             ..+.. .+...+..+.|-.       +|.++++.-..+.|....++.+..+....  . +.......+  +.+
T Consensus       238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~r~--~~v  311 (331)
T PF07995_consen  238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--E-FLGGFGGRP--RDV  311 (331)
T ss_dssp             S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--E-ECTTSSS-E--EEE
T ss_pred             CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--E-ccccCCCCc--eEE
Confidence                   00001 1234566666653       45566666556677777776443322111  0 111222233  357


Q ss_pred             EEeCCCCCEEEEEeCCCcEE
Q 001258         1053 AAHPQEPNEFALGLSDGGVH 1072 (1113)
Q Consensus      1053 ~~~p~d~~~l~s~~~Dg~v~ 1072 (1113)
                      ++.| ||.+.++.+.+|.|.
T Consensus       312 ~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  312 AQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEET-TSEEEEEE-TTTTEE
T ss_pred             EEcC-CCeEEEEECCCCeEe
Confidence            7788 788888877888764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.77  E-value=1.8  Score=44.46  Aligned_cols=202  Identities=13%  Similarity=0.157  Sum_probs=116.4

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc-cCCCCCCCCccEEEEec
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~v~~l~~s~  828 (1113)
                      ....+.+++|+|+.+.|++........||=                      ..+|.++... +.+   -.....+.+..
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyig  138 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYIG  138 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEec
Confidence            344599999999999999988876555442                      1234433322 222   34456788888


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeee----------cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---e
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATF----------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V  894 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~----------~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~  894 (1113)
                      +|+++++-- ++.+.++.+.....+..+          .......-.++|+| ..+.|..+-+-.=+.||.+..+.   .
T Consensus       139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence            888887776 788888887654322111          11144577899999 55556666666667776655322   1


Q ss_pred             eeeeccc-------ccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          895 KSKLKGH-------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       895 ~~~l~~h-------~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                      +.....+       -..|.++.|.+ .+.+||-+.+++.+.-.|....-........-..+-.........++..++|..
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l  297 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL  297 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence            1111112       23466777875 456667777777777777665321111111111111111123467888888887


Q ss_pred             EEEEcCCeEEE
Q 001258          967 FLVVHETQLAI  977 (1113)
Q Consensus       967 l~~~~d~~v~v  977 (1113)
                      .+++.-+-...
T Consensus       298 YIvSEPnlfy~  308 (316)
T COG3204         298 YIVSEPNLFYR  308 (316)
T ss_pred             EEEecCCccee
Confidence            77765544443

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.76  E-value=2.3  Score=51.83  Aligned_cols=210  Identities=12%  Similarity=0.119  Sum_probs=114.8

Q ss_pred             EEEEEecCCcEEEEEcccceeeeeecccccC--------eEEEEEc----------------CCCCEEEEEeCCCcEEEE
Q 001258          874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFS----------------HALNVLVSSGADSQLCVW  929 (1113)
Q Consensus       874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s----------------~d~~~L~s~s~D~~v~iw  929 (1113)
                      .|.+++.++.|.-.|..+|+.+-++......        ...+++-                .++..++.++.|+.|.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            5666777888888888888877666432211        1123221                134578888899999999


Q ss_pred             eCCCCcccccccc----ccCCCCCCCCCCCceEEEcc---CCcEEEEEc----------CCeEEEEeCCccceeeccccC
Q 001258          930 SSDGWEKQKNRFL----QIPTGRTPTAQSDTRVQFHQ---DQIHFLVVH----------ETQLAIFETTKLECVKQWVPR  992 (1113)
Q Consensus       930 d~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~sp---dg~~l~~~~----------d~~v~v~d~~~~~~~~~~~~~  992 (1113)
                      |.++++.....-.    ....+.......-....-+|   ++..++.+.          +|.|+-+|.+||+.+-.+...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9988876421100    00000000000000111112   444333321          478999999999988776531


Q ss_pred             C----------------CCCCeeEEEECCCCCEEEEEe------------------CCCcEEEEecCCCceeeecCCCcc
Q 001258          993 E----------------SSAPITHATFSCDSQLVYACF------------------LDATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus       993 ~----------------h~~~v~~l~~s~dg~~l~s~~------------------~Dg~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
                      .                ....-..++++++...++.+.                  ..+.|.-.|.+||+..-.++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            0                011113456666655554422                  124577778899998877652111


Q ss_pred             cCCCcccCccceEEEEeCC-CCC---EEEEEeCCCcEEEEeccCCCcccc
Q 001258         1039 LPAGVSSNVHPLVIAAHPQ-EPN---EFALGLSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus      1039 ~~~gh~~~v~~i~~~~~p~-d~~---~l~s~~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
                      ..-.....-.++ +.-.+. +|+   .++.++.+|.+++.|-++|+..|.
T Consensus       436 D~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~  484 (764)
T TIGR03074       436 DLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVP  484 (764)
T ss_pred             ccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEee
Confidence            000001111122 221222 553   789999999999999999995554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.64  E-value=0.043  Score=53.58  Aligned_cols=108  Identities=11%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce-EEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCC
Q 001258          916 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR-VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRE  993 (1113)
Q Consensus       916 ~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~  993 (1113)
                      .|...+.|+.|+-+++...+...      ....     .+.. ...-.-+..+++ +.++.|.+|..............+
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~------rse~-----~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~  100 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESC------RSER-----FIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG  100 (238)
T ss_pred             hhccccCCcccccchhhhhhhhh------hhhh-----hhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcc
Confidence            34455778888888776532110      0000     0111 111223344555 589999999876322222222111


Q ss_pred             CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          994 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       994 h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      -......+.-..++.+..+++.||.|+-|++.-++.+....
T Consensus       101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen  101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             cccceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            12222333444566688899999999999999888876654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.64  E-value=0.03  Score=40.24  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcce
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER  393 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~  393 (1113)
                      ..+|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            45799999999999 7999999999999998 4543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.55  E-value=2.3  Score=44.56  Aligned_cols=150  Identities=15%  Similarity=0.165  Sum_probs=85.0

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      .+...++|+||+.+.+....++.-.+|-...+.....                  .+.+  ..+..-.|+++|...+...
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~------------------~~~g--~~l~~PS~d~~g~~W~v~~   84 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRP------------------VLTG--GSLTRPSWDPDGWVWTVDD   84 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCccee------------------eccC--CccccccccCCCCEEEEEc
Confidence            7889999999997555553333333443333332221                  1222  2788889999988887777


Q ss_pred             CCCeEEEEE-ccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEE-ecCCCcEEEEeCC---CC------ceeeEeecc
Q 001258          440 SRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVWDAT---NG------AKQYIFEGH  508 (1113)
Q Consensus       440 ~d~~i~iwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s-~s~d~~i~iwd~~---~~------~~~~~~~~h  508 (1113)
                      .+...+++. ..+++..........-.+.|..+.+||||.++.++. ...++.|.|=-+.   .|      ..+......
T Consensus        85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~  164 (253)
T PF10647_consen   85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL  164 (253)
T ss_pred             CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence            666667663 333332221111222222899999999999854444 2334666666543   23      111122233


Q ss_pred             CcCEEEEeeeecCCceEEEEEec
Q 001258          509 EAPVYSVCPHHKENIQFIFSTAL  531 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~  531 (1113)
                      ...+..+.|....  .+++.+..
T Consensus       165 ~~~v~~v~W~~~~--~L~V~~~~  185 (253)
T PF10647_consen  165 LSDVTDVAWSDDS--TLVVLGRS  185 (253)
T ss_pred             cCcceeeeecCCC--EEEEEeCC
Confidence            4678888886543  45544443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.51  E-value=1.3  Score=43.63  Aligned_cols=89  Identities=9%  Similarity=0.116  Sum_probs=64.2

Q ss_pred             cEEEEecCCCEEEEEe--CCeEEEEE--CCCCce-----eeeecC----CCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          822 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s--dg~i~vwd--~~~~~~-----~~~~~~----~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                      ..++|+.+.+.+....  +-+|.-||  ..+|..     +..++.    .....-.+++.. +|++.++.-..|+|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            4678888888777665  56777787  445433     222221    111223455555 788888888889999999


Q ss_pred             cccceeeeeecccccCeEEEEEc
Q 001258          889 VRVDEVKSKLKGHSKRITGLAFS  911 (1113)
Q Consensus       889 ~~~~~~~~~l~~h~~~V~~l~~s  911 (1113)
                      ..+|+.+.++.-....|++++|-
T Consensus       240 p~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEec
Confidence            99999999998889999999996

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.49  E-value=1  Score=53.30  Aligned_cols=234  Identities=11%  Similarity=0.099  Sum_probs=126.6

Q ss_pred             cCCCEEEEEe-C------CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC-C-----cEEEEEcccc
Q 001258          828 KNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD  892 (1113)
Q Consensus       828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-----~v~iwd~~~~  892 (1113)
                      ..+..+++|+ +      ..+..+|..+..-..  .+. ....-.++++.  ++.+.++|+.| |     .+..||..++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3455566665 3      358888887664322  222 22224455555  56889999998 3     6778887764


Q ss_pred             e--eeeeecccccCeEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCc
Q 001258          893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  965 (1113)
Q Consensus       893 ~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  965 (1113)
                      +  .+..+...........+  +|...|+||.||.     |..||..+.+   +.........     .-..-...-+|+
T Consensus       360 ~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~---W~~va~m~~~-----r~~~gv~~~~g~  429 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK---WTPVAPMLTR-----RSGHGVAVLGGK  429 (571)
T ss_pred             ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc---ccccCCCCcc-----eeeeEEEEECCE
Confidence            3  23333322222222222  7888999999964     6677766632   1111111000     112223344666


Q ss_pred             EEEE-EcC------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCCceeeec
Q 001258          966 HFLV-VHE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKLRCRI 1033 (1113)
Q Consensus       966 ~l~~-~~d------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~~~~~~~ 1033 (1113)
                      ..++ |.+      ..+..||..+.+....-...- ...-..++ .-++...+.||.|+.     |..||..+.+....-
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence            6666 323      368889988877644322111 11111122 336777788887763     777888876655321


Q ss_pred             CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeccCCCccccCCCC
Q 001258         1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus      1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1088 (1113)
                        ....+   .+.+.   ++-.  ++.+.++|+.||     +|..||..+.+  |....+
T Consensus       508 --~m~~~---rs~~g---~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  508 --PMTSP---RSAVG---VVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             --cCccc---ccccc---EEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence              11111   11111   2211  577888999887     68888888766  555444

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.44  E-value=0.052  Score=39.01  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  453 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~  453 (1113)
                      ...|.+++|||...+||.++.+|.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            347999999999999999999999999998 444

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.37  E-value=9.3  Score=46.37  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=72.6

Q ss_pred             ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEE--EecCCCceeeec
Q 001258          956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV--FSAANLKLRCRI 1033 (1113)
Q Consensus       956 ~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~v--wd~~~~~~~~~~ 1033 (1113)
                      .-.++.|-..++.++-...+++||+-..+..+......-...|+.+++  .+..+++|...-.|..  |+-+..+++ .+
T Consensus       937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~-~f 1013 (1205)
T KOG1898|consen  937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLI-VF 1013 (1205)
T ss_pred             cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEE-EE
Confidence            345677777788888889999999988877776554333566777776  4567777776555555  444444444 22


Q ss_pred             CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .     .+.-..+|+...+.    |-..++.+..=|++.+-.++..-
T Consensus      1014 a-----dD~~pR~Vt~~~~l----D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1014 A-----DDPVPRHVTALELL----DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             e-----CCCccceeeEEEEe----cCCceeeccccCcEEEEECCCcc
Confidence            1     11122345543333    56789988888888888776543

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.31  E-value=2.3  Score=41.94  Aligned_cols=140  Identities=16%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             cCCeeEEEEcCCCCeeEEEE-ecCC--------CcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258          465 VGGVNDIAFSHPNKQLCVIT-CGDD--------KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  535 (1113)
Q Consensus       465 ~~~V~~v~~s~~~~~~~l~s-~s~d--------~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1113)
                      ..+.+.-..+|+|+  +++. -+.-        |.++.|-.  +..+..+...-+--+.++|..+. ..+-++-+.+-.|
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~~le~~~g~Ly~~~~--~h~v~~i~~~v~IsNgl~Wd~d~-K~fY~iDsln~~V  182 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGDDLEPIGGELYSWLA--GHQVELIWNCVGISNGLAWDSDA-KKFYYIDSLNYEV  182 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccccccccccEEEEecc--CCCceeeehhccCCccccccccC-cEEEEEccCceEE
Confidence            44667778899999  4322 2211        22333321  11112222222233456676332 2455666677788


Q ss_pred             EEEEcCCCCCeeeeeCCCCceEEEE-------EccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce
Q 001258          536 KAWLYDNLGSRVDYEAPGRWCTTMA-------YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  608 (1113)
Q Consensus       536 ~iwd~~~~~~~~~~~~~~~~v~~~~-------~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  608 (1113)
                      .-||.+-......   ....+..+.       .-|||              ++++.+|+..+++-..++|...|..+|+.
T Consensus       183 ~a~dyd~~tG~~s---nr~~i~dlrk~~~~e~~~PDG--------------m~ID~eG~L~Va~~ng~~V~~~dp~tGK~  245 (310)
T KOG4499|consen  183 DAYDYDCPTGDLS---NRKVIFDLRKSQPFESLEPDG--------------MTIDTEGNLYVATFNGGTVQKVDPTTGKI  245 (310)
T ss_pred             eeeecCCCccccc---CcceeEEeccCCCcCCCCCCc--------------ceEccCCcEEEEEecCcEEEEECCCCCcE
Confidence            8888442211110   000111111       12333              34566778888888999999999999999


Q ss_pred             EEEEccCCCCCCcCeEEECC
Q 001258          609 LTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       609 ~~~~~~~~~~~~v~~~~~s~  628 (1113)
                      +..+...  ...|+|++|.-
T Consensus       246 L~eiklP--t~qitsccFgG  263 (310)
T KOG4499|consen  246 LLEIKLP--TPQITSCCFGG  263 (310)
T ss_pred             EEEEEcC--CCceEEEEecC
Confidence            9999877  56799999975

>PHA02713 hypothetical protein; Provisional

Probab=95.15  E-value=1.2  Score=52.84  Aligned_cols=187  Identities=11%  Similarity=0.094  Sum_probs=96.0

Q ss_pred             cCCCEEEEEe-C------CeEEEEECCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc-
Q 001258          828 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD-  892 (1113)
Q Consensus       828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~-  892 (1113)
                      -++...+.|+ +      ..+..||..+..-.  ..+....... +++. - ++++.+.|+.++     .|..||..+. 
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            3666666665 3      24778887765321  1111111111 2222 2 678888898764     4888998754 


Q ss_pred             -eeeeeecccccCeEEEEEcCCCCEEEEEeCCC-----------------------cEEEEeCCCCccccccccc-cCCC
Q 001258          893 -EVKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQ-IPTG  947 (1113)
Q Consensus       893 -~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----------------------~v~iwd~~~~~~~~~~~~~-~~~~  947 (1113)
                       ..+..+.........+++  +|+..+.||.++                       .+..||..+.+   +.... ....
T Consensus       379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~---W~~v~~m~~~  453 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI---WETLPNFWTG  453 (557)
T ss_pred             EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe---EeecCCCCcc
Confidence             333333222222222222  678888887653                       36677766532   11111 1111


Q ss_pred             CCCCCCCCceEEEccCCcEEEEE-cC------CeEEEEeCCc-cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC--
Q 001258          948 RTPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-- 1017 (1113)
Q Consensus       948 ~~~~~~~i~~~~~spdg~~l~~~-~d------~~v~v~d~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-- 1017 (1113)
                      +      ....+..-+|+..++| .+      ..+..||..+ .+................+.  -+|+..++|+.||  
T Consensus       454 r------~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~  525 (557)
T PHA02713        454 T------IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYM  525 (557)
T ss_pred             c------ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeeccee
Confidence            1      1112233445555554 32      2467899887 44432222111112222222  2788888999888  


Q ss_pred             cEEEEecCCCcee
Q 001258         1018 TVCVFSAANLKLR 1030 (1113)
Q Consensus      1018 ~v~vwd~~~~~~~ 1030 (1113)
                      .+..||..+.+-.
T Consensus       526 ~~e~yd~~~~~W~  538 (557)
T PHA02713        526 LQDTFNVYTYEWN  538 (557)
T ss_pred             ehhhcCccccccc
Confidence            6778888776554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.15  E-value=1.2  Score=48.70  Aligned_cols=191  Identities=14%  Similarity=0.157  Sum_probs=91.4

Q ss_pred             EEEEecCCCEEEEEe---C----CeEEEEECCCCceeeeecCCC---CCeeEEEEecCCCcEEEEEe-------------
Q 001258          823 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM-------------  879 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s---d----g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~-------------  879 (1113)
                      .+..-|+|+.++++-   +    |.+.++|-++.+.........   ..-..+-|.| ..+.+++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence            345568998888762   2    568889988877776654322   2245566777 666666653             


Q ss_pred             -------cCCcEEEEEcccceeeeeecccc--cCeEEEEEcCC--CCEEEEE-eCCCcEEEE-eCCCCccccccccccCC
Q 001258          880 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNVLVSS-GADSQLCVW-SSDGWEKQKNRFLQIPT  946 (1113)
Q Consensus       880 -------~dg~v~iwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~L~s~-s~D~~v~iw-d~~~~~~~~~~~~~~~~  946 (1113)
                             ...++.+||+.+.+.++++.--.  ..+..|.|..+  ..+-+++ .-..+|..| ..+.++-.....+.+..
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                   12479999999999998886432  23556777644  4443332 233444444 22333222222222221


Q ss_pred             CC-------------CCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc---eeeccccCCC--------------
Q 001258          947 GR-------------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE---CVKQWVPRES--------------  994 (1113)
Q Consensus       947 ~~-------------~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~---~~~~~~~~~h--------------  994 (1113)
                      ..             .....-|+.+.+|.|.++|.++  ..|.++.||+..-.   .+.+...++.              
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            10             0002357999999999999995  79999999997643   3333222110              


Q ss_pred             CCCeeEEEECCCCCEEEEEe
Q 001258          995 SAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       995 ~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      .+...-+..|-||+.|+..+
T Consensus       373 ~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -S----EEE-TTSSEEEEE-
T ss_pred             CCCCCeEEEccCCeEEEEEe
Confidence            22346788899999987664

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.79  E-value=3  Score=42.92  Aligned_cols=168  Identities=7%  Similarity=0.052  Sum_probs=109.2

Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  976 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~  976 (1113)
                      +.|-...|.++.|+|+.+.|++......-.+|=...|+.....++....       ....+.+..+|++.++- .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence            3444555999999999999999888877777766666655444443322       34678888899988884 778888


Q ss_pred             EEeCCccceeec-----ccc--CCC-CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcc----
Q 001258          977 IFETTKLECVKQ-----WVP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---- 1044 (1113)
Q Consensus       977 v~d~~~~~~~~~-----~~~--~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~---- 1044 (1113)
                      ++.++....+..     +..  ..+ +.....++|+|.+..|+.+-+-.-+.||.+..+.-.....    ...+++    
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence            887765532211     111  122 5567889999999999998888878888776332111111    111121    


Q ss_pred             ---cCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1045 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1045 ---~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                         ..|.+  +.|.+..+.+|+-+.+++.|.-.+...
T Consensus       230 ~f~~DvSg--l~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         230 LFVLDVSG--LEFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eEeecccc--ceecCCCCcEEEEecCCceEEEEecCC
Confidence               12333  677776777888888877777666543

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.30  E-value=7  Score=40.30  Aligned_cols=190  Identities=10%  Similarity=0.080  Sum_probs=101.7

Q ss_pred             cCceEEEEEeCCCceEEEeecCC--eEEEEEccccccCCCCceeeeecCeecCCCCcccccc-ccCCCCCCCCccEEEEe
Q 001258          751 ATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s  827 (1113)
                      ..-...+.|..+|..+-+.+.-|  .++.++                      +.+|+.... .+.   ...--..++..
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d----------------------~~tg~~~~~~~l~---~~~FgEGit~~   98 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVD----------------------LETGKVLQSVPLP---PRYFGEGITIL   98 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEE----------------------TTTSSEEEEEE-T---TT--EEEEEEE
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEE----------------------CCCCcEEEEEECC---ccccceeEEEE
Confidence            34457888888888777777766  455444                      445543321 111   22223445555


Q ss_pred             cCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccc-----c
Q 001258          828 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-----S  902 (1113)
Q Consensus       828 ~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h-----~  902 (1113)
                      .|.-+.++--++...+||..+.+.+.++.-. ..=..++  . |++.|+.......++++|..+.+....+.-.     -
T Consensus        99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt--~-dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv  174 (264)
T PF05096_consen   99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLT--S-DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV  174 (264)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEE--E-CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE-
T ss_pred             CCEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEE--c-CCCEEEEECCccceEEECCcccceEEEEEEEECCEEC
Confidence            4433333334899999999999988887633 3445555  3 5666777766778999998876665555322     1


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc----cc---cCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF----LQ---IPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~----~~---~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ..++-|.|- +|...|=.=....|..-|..+|+.....-    ..   ....+.+...-...+|+.|.+..+.+.
T Consensus       175 ~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  175 SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             --EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            234556664 55555544444556666666665433111    11   011111112356789999887766653

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK10115 protease 2; Provisional

Probab=94.29  E-value=18  Score=44.35  Aligned_cols=244  Identities=9%  Similarity=0.046  Sum_probs=115.1

Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      -.+..+.++|||++|+.+.+.+--.-++                 +.+.++.+|..+...+.+     .-..++|++|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence            3466788899999877665532211111                 223444455433322221     114689999999


Q ss_pred             EEEEEe-C------CeEEEEECCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEec---CCcEEEEEcc--cceeeee
Q 001258          832 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK  897 (1113)
Q Consensus       832 ~l~~~s-d------g~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~v~iwd~~--~~~~~~~  897 (1113)
                      .|+... +      ..|+.+++.++  +....+........-..+.+.++++++..+.   ++.+.+|+..  +++....
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~  264 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF  264 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence            777664 2      25888888877  3334444333333322333336666655543   3578888853  3332222


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcC
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE  972 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D-~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d  972 (1113)
                      +..-.+....+. +..+.+++....+ ...++.  ++..  ......+...  ..  ...+..+.+.  +.+|+.  ..+
T Consensus       265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~l~~~--~~--~~~i~~~~~~--~~~l~~~~~~~  335 (686)
T PRK10115        265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIPP--RE--NIMLEGFTLF--TDWLVVEERQR  335 (686)
T ss_pred             EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC--cccCeEEECC--CC--CCEEEEEEEE--CCEEEEEEEeC
Confidence            221122222222 2233333333322 233344  4432  1111111111  11  0245666776  334444  355


Q ss_pred             Ce--EEEEeCCccceeeccccCCCCCCeeEEEEC--CCCC-EEEEEeC---CCcEEEEecCCCc
Q 001258          973 TQ--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLK 1028 (1113)
Q Consensus       973 ~~--v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s~~~---Dg~v~vwd~~~~~ 1028 (1113)
                      +.  +.+++..++.. ..+.... ...+..+.++  +++. ++++.+.   -+.+..+|..+++
T Consensus       336 g~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        336 GLTSLRQINRKTREV-IGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             CEEEEEEEcCCCCce-EEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            54  55556543332 3222111 1223333444  4443 4444443   3668889988765

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=0.66  Score=55.89  Aligned_cols=146  Identities=12%  Similarity=0.064  Sum_probs=94.0

Q ss_pred             CCCccEEEEecCCCEEEEEe--C-CeEEEEECCCCceee-----eecC------CCCCeeEEEEecCCCcEEEEEecCCc
Q 001258          818 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMP------PPPAATFLAFHPQDNNIIAIGMDDSS  883 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~  883 (1113)
                      ...+..+++.+|++..++..  + ..|..||+.+.....     -+..      ......++.|.|.-....|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            34566677778877666554  3 468999987543221     1111      12335678888844455677788999


Q ss_pred             EEEEEcccce-eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258          884 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       884 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                      |++..+.-.. ....+ .....+++++|+|-|+.|+.|-..|++.-|...-..+....+....+     ...|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e-----~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE-----NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCC-----CcceeEEEEec
Confidence            9998765322 22222 24567899999999999999999999999976542221111111111     25789999988


Q ss_pred             CCcEEEE
Q 001258          963 DQIHFLV  969 (1113)
Q Consensus       963 dg~~l~~  969 (1113)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888776

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=94.19  E-value=3.3  Score=45.30  Aligned_cols=195  Identities=10%  Similarity=0.106  Sum_probs=107.7

Q ss_pred             CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCcccccc
Q 001258          871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNV--LVSSG-AD---SQLCVWSSDGWEKQKNR  940 (1113)
Q Consensus       871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~--L~s~s-~D---~~v~iwd~~~~~~~~~~  940 (1113)
                      ...+++....++-+.+||+. |+.++.+.  .++++.+..-    -+|+.  |+.++ .+   .+|++|.++....   .
T Consensus        67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~  140 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---E  140 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---E
T ss_pred             ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---c
Confidence            44577777888999999987 55566653  2344444332    13333  44444 32   4699998874221   1


Q ss_pred             ccccCCC-C--CCCCCCCceEEEc--c-CCcEEEE--EcCCeEEEEeCC---cc----ceeeccccCCCCCCeeEEEECC
Q 001258          941 FLQIPTG-R--TPTAQSDTRVQFH--Q-DQIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSC 1005 (1113)
Q Consensus       941 ~~~~~~~-~--~~~~~~i~~~~~s--p-dg~~l~~--~~d~~v~v~d~~---~~----~~~~~~~~~~h~~~v~~l~~s~ 1005 (1113)
                      +..+... +  ......++.+|+-  + +|.+.+.  ..+|.+..|.+.   ++    +.++.|..   .+.+..+....
T Consensus       141 L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDD  217 (381)
T PF02333_consen  141 LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDD  217 (381)
T ss_dssp             EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEET
T ss_pred             ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEec
Confidence            1111110 0  0011235666663  3 4665444  477877777664   23    45677764   45888999998


Q ss_pred             CCCEEEEEeCCCcEEEEecCC-----CceeeecCCCcccCCCcccCccceEEEEeCC-CCCEEEEEeCCCcEEEEeccCC
Q 001258         1006 DSQLVYACFLDATVCVFSAAN-----LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1006 dg~~l~s~~~Dg~v~vwd~~~-----~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~-d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                      ...+|+.+-+|.-|.-|+.+.     ++++....     ..+....|..+.+-..+. .|.+|+|.=.+++..||+....
T Consensus       218 e~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-----g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  218 ETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-----GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TTTEEEEEETTTEEEEEESSCCC-S--EEEEEBS-----SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             ccCCEEEecCccEEEEEecCCCCCCcceeeeccc-----ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            889999998887666666642     22232221     223456788877765542 3445666667889999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=94.12  E-value=2.9  Score=49.61  Aligned_cols=194  Identities=8%  Similarity=0.031  Sum_probs=100.9

Q ss_pred             ccEEEEecCCCEEEEEe-C------CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEE
Q 001258          821 VPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQI  886 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~i  886 (1113)
                      -.++++. ++...++|+ |      .++..||..+.+-..  .+....... .++.  -+|.+.|+|+.||     +|..
T Consensus       325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~--l~g~iYavGG~dg~~~l~svE~  400 (571)
T KOG4441|consen  325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV--LDGKLYAVGGFDGEKSLNSVEC  400 (571)
T ss_pred             cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE--ECCEEEEEeccccccccccEEE
Confidence            3344444 446666665 6      347888887655222  122111111 1222  2788999999997     4777


Q ss_pred             EEcccc--eeeeeecccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeCCCCccccccccccCCCCCCCCCCCceE
Q 001258          887 YNVRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  958 (1113)
Q Consensus       887 wd~~~~--~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~  958 (1113)
                      ||..+.  ..+..+.........+.+  +|...+.||.|+      ++..||..++.=.....+.....       -.. 
T Consensus       401 YDp~~~~W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~-------~~g-  470 (571)
T KOG4441|consen  401 YDPVTNKWTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS-------GFG-  470 (571)
T ss_pred             ecCCCCcccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc-------cce-
Confidence            887653  333333222222222233  688888888664      46778877644222222222211       122 


Q ss_pred             EEccCCcEEEE-EcCC-----eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCC
Q 001258          959 QFHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANL 1027 (1113)
Q Consensus       959 ~~spdg~~l~~-~~d~-----~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~ 1027 (1113)
                      +-.-++...++ |.|+     .|..||..+.+....-........+....  -+++..++|+.||.     |..||..+.
T Consensus       471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d  548 (571)
T KOG4441|consen  471 VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD  548 (571)
T ss_pred             EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence            33345555555 4444     47889988776654422111122222222  25667778887754     777776665


Q ss_pred             cee
Q 001258         1028 KLR 1030 (1113)
Q Consensus      1028 ~~~ 1030 (1113)
                      +-.
T Consensus       549 ~W~  551 (571)
T KOG4441|consen  549 TWT  551 (571)
T ss_pred             cee
Confidence            444

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=94.08  E-value=0.13  Score=47.49  Aligned_cols=66  Identities=20%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccC
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKY  133 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  133 (1113)
                      ++.. ++|+++-+.||||+..|...+|..|+++.-.-+...+.+.++.|+.+....++..++....+
T Consensus        25 EL~~-lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~   90 (133)
T cd08044          25 ELSQ-LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLF   90 (133)
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHH
Confidence            4544 99999999999999999999999999977666666677888888888877777765554433

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=1.8  Score=41.90  Aligned_cols=173  Identities=11%  Similarity=0.064  Sum_probs=95.9

Q ss_pred             CCCEEEEEe---CCeEEEEECCCCceeeeecCCCC-----CeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258          829 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  900 (1113)
Q Consensus       829 ~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-----~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  900 (1113)
                      +|.++.+.+   ...|++||+.+++.+..-.-...     .++.+     +..+.+..-.+|.-.+||..+.+++..+. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~-  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS-  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence            455555554   46799999999988765432211     12222     33445556688999999999988887765 


Q ss_pred             cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEe
Q 001258          901 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  979 (1113)
Q Consensus       901 h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d  979 (1113)
                      ..+.=++++.  |+..|+.++...+++.-|.++........ -...+..-  ..+..+.| -||...|- -....|...+
T Consensus       129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~-VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~  202 (262)
T COG3823         129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQ-VTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARID  202 (262)
T ss_pred             cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEE-EEECCeec--ccccceee-eccEEEEeeeeecceEEEc
Confidence            3344455554  66667777666677777766533222111 11111100  11122222 13444443 2444555556


Q ss_pred             CCccceeecccc----------CCCCCCeeEEEECCCC-CEEEEE
Q 001258          980 TTKLECVKQWVP----------RESSAPITHATFSCDS-QLVYAC 1013 (1113)
Q Consensus       980 ~~~~~~~~~~~~----------~~h~~~v~~l~~s~dg-~~l~s~ 1013 (1113)
                      .++|+.+..+..          ..|..-...+++.|++ +++++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            666665444321          1245567889999987 455555

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.99  E-value=1.4  Score=51.53  Aligned_cols=125  Identities=12%  Similarity=0.169  Sum_probs=76.5

Q ss_pred             CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC
Q 001258          466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG  544 (1113)
Q Consensus       466 ~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  544 (1113)
                      ....-+.-|.-++  ..+..+...++.|||...+.....-. ...+.|..+.|...++++.+++.|..+.|.++.-..  
T Consensus        30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R--  105 (631)
T PF12234_consen   30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR--  105 (631)
T ss_pred             CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc--
Confidence            3455555555566  33444455679999999887554332 357889999999999999999999999999984321  


Q ss_pred             CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258          545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  603 (1113)
Q Consensus       545 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  603 (1113)
                        ..+....     -+|.+-.+.-+..++...|....|.++|..++..  ++.+.|+|-
T Consensus       106 --~dy~~~~-----p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  106 --YDYTNKG-----PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             --hhhhcCC-----cccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence              1110000     0111111122233444566667777777644433  467888774

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=93.84  E-value=13  Score=41.15  Aligned_cols=132  Identities=17%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             CeEEEEECCCCceeeeecCCCC--CeeEEEEecC-CCcEEEEEe-cCCcEEEEEc-ccce----eeeeecc---------
Q 001258          839 GKISLFNMMTFKTMATFMPPPP--AATFLAFHPQ-DNNIIAIGM-DDSSIQIYNV-RVDE----VKSKLKG---------  900 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~-d~~~la~g~-~dg~v~iwd~-~~~~----~~~~l~~---------  900 (1113)
                      .++.+||+.+.+.++++.-...  ....+.|..+ +..+=++|+ -.++|..|-- ..++    .+..+..         
T Consensus       222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp  301 (461)
T PF05694_consen  222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILP  301 (461)
T ss_dssp             -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---
T ss_pred             CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccc
Confidence            4699999999999998865433  2456666541 233333332 2334444432 3221    1111111         


Q ss_pred             --------cccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCC-----------CCCCCCCceEEE
Q 001258          901 --------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGR-----------TPTAQSDTRVQF  960 (1113)
Q Consensus       901 --------h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~~i~~~~~  960 (1113)
                              -..-|+.|..|.|.++|...+ .+|.|+.||+......+..-.....+.           ..-.+...-+..
T Consensus       302 ~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvql  381 (461)
T PF05694_consen  302 EMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQL  381 (461)
T ss_dssp             GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE
T ss_pred             ccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEE
Confidence                    124579999999999987666 689999999987543321111111100           001123467888


Q ss_pred             ccCCcEEEEE
Q 001258          961 HQDQIHFLVV  970 (1113)
Q Consensus       961 spdg~~l~~~  970 (1113)
                      |-||+.|.++
T Consensus       382 S~DGkRlYvT  391 (461)
T PF05694_consen  382 SLDGKRLYVT  391 (461)
T ss_dssp             -TTSSEEEEE
T ss_pred             ccCCeEEEEE
Confidence            9999988773

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=93.75  E-value=0.15  Score=47.69  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=46.8

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhh
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQL  130 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  130 (1113)
                      ++.. ++|+++-|.||+|+..+..++|..|+.+...-+.....+.+++|..+....++..++..
T Consensus        36 EL~~-lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~   98 (142)
T PF04494_consen   36 ELSR-LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELA   98 (142)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHH
Confidence            4444 99999999999999999999999999987776766667777888766665555544433

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.73  E-value=5.7  Score=46.32  Aligned_cols=183  Identities=11%  Similarity=0.124  Sum_probs=96.7

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee----cccccCeEEEEEcCCC
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL----KGHSKRITGLAFSHAL  914 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l----~~h~~~V~~l~~s~d~  914 (1113)
                      -.|+||++. |..+..+.-....+..+.|+. +. -|++-..+|+++||++.. +.+...    ......|..+.|..+|
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~G  139 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNG  139 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCc
Confidence            348888875 455555444445899999996 44 556678999999999763 323221    2223345555555555


Q ss_pred             CEEEEEeCCCcEEE-EeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--EcC---C-eEEEEeCCccceee
Q 001258          915 NVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHE---T-QLAIFETTKLECVK  987 (1113)
Q Consensus       915 ~~L~s~s~D~~v~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d---~-~v~v~d~~~~~~~~  987 (1113)
                      -.+.+  .+|.+.+ -+......  .....++...    ..-.+...-+++.....  .-+   + .+..-+..+.+...
T Consensus       140 Vavlt--~~g~v~~i~~~~~~~~--~~~~diP~~~----~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~  211 (829)
T KOG2280|consen  140 VAVLT--VSGQVILINGVEEPKL--RKMPDIPYNE----LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA  211 (829)
T ss_pred             eEEEe--cCCcEEEEcCCCcchh--hhCCCCCCcc----CCCcceeEecCCCcceeEEeechhhhhcccceecccccccc
Confidence            43333  3444433 23322110  0011111110    01123322233221111  111   0 11111111112111


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCC
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~ 1036 (1113)
                      .-.  . .+.+..+..||+.++|+-=..+|.|.+-+.+..+..+.+...
T Consensus       212 ~~~--~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~  257 (829)
T KOG2280|consen  212 LSW--P-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCT  257 (829)
T ss_pred             cCC--C-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCC
Confidence            111  1 367888999999999999999999999999988888887643

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=93.69  E-value=1.4  Score=50.32  Aligned_cols=78  Identities=15%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  499 (1113)
                      ...++++.-+|.|..++.+..||+|++|+.......+    +-....+-..+.|...|    +++...|..+--|. +.|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG   84 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence            3467888888999999999999999999987644321    21223345566776555    56666788888887 666


Q ss_pred             ceeeEee
Q 001258          500 AKQYIFE  506 (1113)
Q Consensus       500 ~~~~~~~  506 (1113)
                      .....|.
T Consensus        85 vvqqqfd   91 (1636)
T KOG3616|consen   85 VVQQQFD   91 (1636)
T ss_pred             cchhhcc
Confidence            5555443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.44  E-value=12  Score=45.56  Aligned_cols=73  Identities=11%  Similarity=0.139  Sum_probs=51.6

Q ss_pred             CCeeEEEEecCCCcEEEEEecCCcEEEEEccc----------cee--e-eee--------cccccCeEEEEEcCC---CC
Q 001258          860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----------DEV--K-SKL--------KGHSKRITGLAFSHA---LN  915 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----------~~~--~-~~l--------~~h~~~V~~l~~s~d---~~  915 (1113)
                      -.|..+.++| +|++||..+..| |.|-.+..          |+.  . +.+        ..+...|..+.|+|.   +.
T Consensus        85 f~v~~i~~n~-~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   85 FEVHQISLNP-TGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             eeEEEEEECC-CCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            3588899999 899999888765 44444421          111  1 111        234567899999986   58


Q ss_pred             EEEEEeCCCcEEEEeCCCC
Q 001258          916 VLVSSGADSQLCVWSSDGW  934 (1113)
Q Consensus       916 ~L~s~s~D~~v~iwd~~~~  934 (1113)
                      .|+.-..|+++++||+...
T Consensus       163 ~l~vLtsdn~lR~y~~~~~  181 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDP  181 (717)
T ss_pred             eEEEEecCCEEEEEecCCC
Confidence            8999999999999999753

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.39  E-value=10  Score=38.63  Aligned_cols=244  Identities=12%  Similarity=0.079  Sum_probs=144.2

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      .......++-++||..-.++. .+.|--.|-.+++....--+....-..+..-| |+..-++-+.. .|.-.|-++.+..
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt  137 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVT  137 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceE
Confidence            345567788899998888776 57777788888887666555556667778888 44443332222 3444454443321


Q ss_pred             e-e--ecccccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          896 S-K--LKGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       896 ~-~--l~~h~~~V~~l~~s~d~~~L~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      . .  .+.-........|.++|++-+++...         +.|++|+.-             .+     ...+.++..||
T Consensus       138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG-----~gpyGi~atpd  199 (353)
T COG4257         138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QG-----GGPYGICATPD  199 (353)
T ss_pred             EeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CC-----CCCcceEECCC
Confidence            1 1  12234557788899999988887532         234444432             22     24578999999


Q ss_pred             CcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC
Q 001258          964 QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus       964 g~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
                      |...+++ .+..|...|..++..-....+.+-...-..+--+|.|+.-++....+.+.-||-.... -..+.    +| +
T Consensus       200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LP-g  273 (353)
T COG4257         200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LP-G  273 (353)
T ss_pred             CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CC-C
Confidence            9988875 5666777776666322222222212334455557778877777777778888766544 22332    22 3


Q ss_pred             cccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC-ccccCCCCC
Q 001258         1043 VSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPPV 1089 (1113)
Q Consensus      1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~~~ 1089 (1113)
                      ...+-.++.+-   ..++.-.+--..|.|.-+|.++.. .++..++|-
T Consensus       274 s~arpys~rVD---~~grVW~sea~agai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         274 SKARPYSMRVD---RHGRVWLSEADAGAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             CCCCcceeeec---cCCcEEeeccccCceeecCcccceEEEecCCCCC
Confidence            33344433332   233333444456778888877766 666666663

>PHA03098 kelch-like protein; Provisional

Probab=93.22  E-value=4.4  Score=48.33  Aligned_cols=187  Identities=7%  Similarity=0.004  Sum_probs=91.2

Q ss_pred             cCCCEEEEEe-C------CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccce
Q 001258          828 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  893 (1113)
Q Consensus       828 ~~~~~l~~~s-d------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~  893 (1113)
                      .++..++.|+ +      ..+..||..+.+-...  +....... +++ .- ++++++.|+.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~-~~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVT-VF-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEE-EE-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            3555556554 2      2477888776544221  11111112 222 22 677888888653     57788876643


Q ss_pred             --eeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCC
Q 001258          894 --VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       894 --~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg  964 (1113)
                        ....+........ ++ .-+++..+.||.+      ..+..||..+.+   +.... .+..+     . ...+...++
T Consensus       370 W~~~~~lp~~r~~~~-~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~---W~~~~~~p~~r-----~-~~~~~~~~~  438 (534)
T PHA03098        370 WREEPPLIFPRYNPC-VV-NVNNLIYVIGGISKNDELLKTVECFSLNTNK---WSKGSPLPISH-----Y-GGCAIYHDG  438 (534)
T ss_pred             eeeCCCcCcCCccce-EE-EECCEEEEECCcCCCCcccceEEEEeCCCCe---eeecCCCCccc-----c-CceEEEECC
Confidence              2222211111111 12 2356777777732      357888887643   11111 11111     1 122333455


Q ss_pred             cEEEEE-cC--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258          965 IHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus       965 ~~l~~~-~d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
                      +.+++| .+        ..+.+||..+.+....-...........+.  -++++++.|+.+     ..|.+||..+.+-.
T Consensus       439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        439 KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            555553 21        238889988776543321111011111222  267777777754     46888888776543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.14  E-value=1.9  Score=50.56  Aligned_cols=119  Identities=11%  Similarity=0.170  Sum_probs=74.8

Q ss_pred             CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec-ccccCeEEEEEc--CCCCEEEEEeCCCcEEEEeCCCC
Q 001258          858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW  934 (1113)
Q Consensus       858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~L~s~s~D~~v~iwd~~~~  934 (1113)
                      ....++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|.  ||++.+++.|-.+.|.++.-...
T Consensus        28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~  106 (631)
T PF12234_consen   28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY  106 (631)
T ss_pred             CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence            334455555555 45555554455689999998876442222 356889999986  79999999999999999864211


Q ss_pred             ----ccccccccccC--CCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258          935 ----EKQKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  980 (1113)
Q Consensus       935 ----~~~~~~~~~~~--~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~  980 (1113)
                          .......+...  ..+++  .+|....|.++|..++ +...++.|+|-
T Consensus       107 dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  107 DYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             hhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence                11111111111  22222  4788999999997655 44667777764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.11  E-value=0.085  Score=61.22  Aligned_cols=178  Identities=13%  Similarity=0.196  Sum_probs=101.5

Q ss_pred             CeEEEEECC--CCcee-----eeecCCCCCeeEEEEecC--CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEE
Q 001258          839 GKISLFNMM--TFKTM-----ATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  909 (1113)
Q Consensus       839 g~i~vwd~~--~~~~~-----~~~~~~~~~i~~l~~s~~--d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  909 (1113)
                      |.+.||+++  .|+..     .........+.-+.|.|-  ..-++..+..++.|++.+...... ..+++|+..++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            678889876  33322     112222333455555541  456777888889998887765332 45567887777665


Q ss_pred             -----------EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-------Cc--EEEE
Q 001258          910 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV  969 (1113)
Q Consensus       910 -----------~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-------g~--~l~~  969 (1113)
                                 .||||+.+|.++.||.++.|.+.-..+...+++..-..|..  .+-.|..|..+       +.  ++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       48999999999999999999876444433344433333321  22233334332       22  2233


Q ss_pred             E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE------------EEEEeCCCcEEEEec
Q 001258          970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL------------VYACFLDATVCVFSA 1024 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~------------l~s~~~Dg~v~vwd~ 1024 (1113)
                      +  .++.+++|.-...+|...+.    ...|..+. -+||+.            +++-+-|+.|.+|.=
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            3  34568888887777763332    22333333 333321            234456788888853

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.05  E-value=4.4  Score=47.17  Aligned_cols=196  Identities=9%  Similarity=0.125  Sum_probs=103.2

Q ss_pred             CccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEe
Q 001258          804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGM  879 (1113)
Q Consensus       804 ~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~  879 (1113)
                      +|+++....-.  | ..+..+.|+.+..+|++.-+|+++||++-.. .+..    +......|..+.|.. +|  +++-.
T Consensus        72 sG~lL~~~~w~--~-~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~-~G--Vavlt  144 (829)
T KOG2280|consen   72 SGQLLGRILWK--H-GELIGMGWSDDEELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFH-NG--VAVLT  144 (829)
T ss_pred             cccchHHHHhc--C-CCeeeecccCCceEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEec-Cc--eEEEe
Confidence            45544443332  3 3778899999999888888999999998532 2222    122334466566655 45  33344


Q ss_pred             cCCcEEEEEcccceeeeeecc---cccCeEEEEEcCCCC---EEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          880 DDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALN---VLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       880 ~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~---~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      .+|.|.+-.-.+...+.++..   ..-+-++....+++.   .++-.. ..+ ..+.-.+...   .........    .
T Consensus       145 ~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~  216 (829)
T KOG2280|consen  145 VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----N  216 (829)
T ss_pred             cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----C
Confidence            456665543222222222221   111112222222211   111111 011 1122222211   111111111    1


Q ss_pred             CCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          953 QSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      ..+..+..||+.++|+- ...|.+.+-+.+..++...+....|..+ ..++|..         .|..+.+|+.
T Consensus       217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p-~qm~Wcg---------ndaVvl~~e~  279 (829)
T KOG2280|consen  217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPP-KQMAWCG---------NDAVVLSWEV  279 (829)
T ss_pred             ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCch-Hhceeec---------CCceEEEEee
Confidence            46788999999999998 7899999999998888888776554333 3566643         3455555653

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.03  E-value=13  Score=38.84  Aligned_cols=211  Identities=13%  Similarity=0.114  Sum_probs=115.6

Q ss_pred             CeeEEEEecCCCcEEEEEecCCcEEEEEccc-------ceeeeeecc-----cccCeEEEEEcCCCCE------------
Q 001258          861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-------DEVKSKLKG-----HSKRITGLAFSHALNV------------  916 (1113)
Q Consensus       861 ~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-------~~~~~~l~~-----h~~~V~~l~~s~d~~~------------  916 (1113)
                      .-..++|+| .+.+-++....+...+||...       ..++-.+..     -....+.+.|+....+            
T Consensus        24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~  102 (336)
T TIGR03118        24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR  102 (336)
T ss_pred             ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence            356789999 777777777788999999861       122333331     2346788888743322            


Q ss_pred             EEEEeCCCcEEEEeCCCCcccc-ccccccCCCCCCCCCCCceEEEcc--CCcEEEEE--cCCeEEEEeCCcccee--ecc
Q 001258          917 LVSSGADSQLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV--HETQLAIFETTKLECV--KQW  989 (1113)
Q Consensus       917 L~s~s~D~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~--~d~~v~v~d~~~~~~~--~~~  989 (1113)
                      ++.+++||+|.-|.-.-..... ...+........  ..-..+++..  .+.+|..+  ..++|.|||-.-....  ..|
T Consensus       103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~g--avYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F  180 (336)
T TIGR03118       103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQG--NVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSF  180 (336)
T ss_pred             EEEEeCCceEEeecCcCCcccccccEEEEccCCCc--ceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCc
Confidence            5678899999999854322200 001111111111  1223455553  35666664  7889999986433221  111


Q ss_pred             ccC---CC-----------CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEE--
Q 001258          990 VPR---ES-----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA-- 1053 (1113)
Q Consensus       990 ~~~---~h-----------~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~-- 1053 (1113)
                      ...   ..           .-.|+-..-.+++..=+.|..-|.|-+||.. |++++++....     .=...+.+.++  
T Consensus       181 ~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g-----~LNaPWG~a~APa  254 (336)
T TIGR03118       181 IDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSG-----RLNAPWGLAIAPE  254 (336)
T ss_pred             cCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCC-----cccCCceeeeChh
Confidence            100   00           0011111112222222333345789999986 67777775322     22334544332  


Q ss_pred             -EeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1054 -AHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1054 -~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                       |-.-.|.+|+---.||+|..+|..+++
T Consensus       255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~  282 (336)
T TIGR03118       255 SFGSLSGALLVGNFGDGTINAYDPQSGA  282 (336)
T ss_pred             hhCCCCCCeEEeecCCceeEEecCCCCc
Confidence             111236788877789999999999888

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.88  E-value=1.7  Score=52.59  Aligned_cols=99  Identities=14%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             CccEEEEecCCC--EEEEEeCCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          820 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       820 ~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ...++.|.|.-.  .++.-.|+.|+|..+..... ...+. .....+|++|+| .|+.+++|...|++.-|... ++...
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~  233 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKS  233 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccC-cccceeeEEecc-ccceeeEecCCCeEEEeecc-cceee
Confidence            345666776543  23333488898887753222 22222 345689999999 89999999999999988643 33333


Q ss_pred             eecc----cccCeEEEEEcCCCCEEEEEe
Q 001258          897 KLKG----HSKRITGLAFSHALNVLVSSG  921 (1113)
Q Consensus       897 ~l~~----h~~~V~~l~~s~d~~~L~s~s  921 (1113)
                      .+.+    ...+|.+|+|-....+||+-+
T Consensus       234 ~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  234 EIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             cccCCCcCCCcceeEEEEecceeEEEEec
Confidence            3321    247899999988777777543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.70  E-value=22  Score=40.60  Aligned_cols=126  Identities=16%  Similarity=0.334  Sum_probs=77.2

Q ss_pred             EeccCCCCcEEEEEcCCC----CeEEEEEecCCcEEEEecC-----CcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258          353 RTLNQGSSPMSMDFHPVQ----QTLLLVGTNVGDIGLWEVG-----SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg----~~ll~~gs~dg~i~iwd~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  423 (1113)
                      ..++.-+.|..+.|+|-+    ..|||+ .....|.||.+.     +++.+..   +..++...-.     ++      -
T Consensus        51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~~K~l~s---QtcEi~e~~p-----vL------p  115 (671)
T PF15390_consen   51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTERNKLLMS---QTCEIREPFP-----VL------P  115 (671)
T ss_pred             cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccccccceee---eeeeccCCcc-----cC------C
Confidence            345666779999999863    345555 667899999985     2333222   1111111100     01      1


Q ss_pred             EEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       424 ~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      ..+-|+|....|++-.....-.++++.... .++  ..+ .-.+.|.|.+|.+||.+++++.|+ .=.-+|||-.
T Consensus       116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~  186 (671)
T PF15390_consen  116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSA  186 (671)
T ss_pred             CcccccCCCceEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCc
Confidence            236799999998886655544566665432 222  133 345789999999999986556555 4456899843

>PHA03098 kelch-like protein; Provisional

Probab=92.64  E-value=4  Score=48.72  Aligned_cols=147  Identities=11%  Similarity=0.050  Sum_probs=72.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEEc---C----CeEEEEe
Q 001258          913 ALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVVH---E----TQLAIFE  979 (1113)
Q Consensus       913 d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~~---d----~~v~v~d  979 (1113)
                      +++..+.||.+     ..+..||..+.+   +.... .+..+.     -.++ ..-+++..+.|.   +    ..+..||
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~---W~~~~~lp~~r~-----~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd  412 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESK---WREEPPLIFPRY-----NPCV-VNVNNLIYVIGGISKNDELLKTVECFS  412 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCc---eeeCCCcCcCCc-----cceE-EEECCEEEEECCcCCCCcccceEEEEe
Confidence            67777888765     346778876643   11111 111111     1122 234556555532   1    3588899


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC--------CcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
                      ..+.+....-.... ...-.+ +...+++..+.|+.+        ..+.+||..+.+-...-.    .+... . -... 
T Consensus       413 ~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r-~-~~~~-  483 (534)
T PHA03098        413 LNTNKWSKGSPLPI-SHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPR-I-NASL-  483 (534)
T ss_pred             CCCCeeeecCCCCc-cccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCccc-c-cceE-
Confidence            88765433211110 111112 223366666667643        238888988765542211    11010 0 1111 


Q ss_pred             EEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258         1052 IAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus      1052 ~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
                      +.+   ++.+++.|+.+     +.+.++|+.+.+
T Consensus       484 ~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        484 CIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             EEE---CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence            221   56777777765     468888888765

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.55  E-value=0.23  Score=57.86  Aligned_cols=166  Identities=12%  Similarity=0.069  Sum_probs=96.8

Q ss_pred             CCCCcEEEEEc----CCCCeEEEEEecCCcEEEEecC--CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          357 QGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVG--SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       357 h~~~V~~~~~s----pdg~~ll~~gs~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      -.+.|-.++|-    |.+.      -.-|...|||+.  .|+......+++.+.           ....-..|.-+-|-+
T Consensus       131 f~G~v~dl~fah~~~pk~~------~~vg~lfVy~vd~l~G~iq~~l~v~~~~p-----------~gs~~~~V~wcp~~~  193 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGR------RLVGELFVYDVDVLQGEIQPQLEVTPITP-----------YGSDPQLVSWCPIAV  193 (1283)
T ss_pred             CCCCcccccccccCChHHH------HHhhhhheeehHhhccccccceEEeecCc-----------CCCCcceeeeccccc
Confidence            56777777773    3333      123677888875  355443333322210           111112333334444


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE-----------cCCCCeeEEEEecCCCcEEEEeCC--
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-----------SHPNKQLCVITCGDDKTIKVWDAT--  497 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~-----------s~~~~~~~l~s~s~d~~i~iwd~~--  497 (1113)
                      +.-++..+-.++.|++.++.+...    .-+++|..++..++|           ||||+  .|+.++.||.++.|.+.  
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi~  267 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYIT  267 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeeee
Confidence            778888888899999887776543    135678888777665           78898  78888999988888654  


Q ss_pred             ---CCceeeEeeccCcCEEEEeeeecCC---------ceEEEEEec-CCcEEEEEcCCCCCe
Q 001258          498 ---NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR  546 (1113)
Q Consensus       498 ---~~~~~~~~~~h~~~v~~~~~~~~~~---------~~~l~s~~~-dg~i~iwd~~~~~~~  546 (1113)
                         ..+|++.++.|++.-. +||+...+         -.++++++. +..+++|.....++.
T Consensus       268 g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  268 GKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             ccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence               3355666676763221 12222111         123455544 456899976655544

>PRK13684 Ycf48-like protein; Provisional

Probab=92.37  E-value=20  Score=39.39  Aligned_cols=156  Identities=10%  Similarity=0.025  Sum_probs=88.0

Q ss_pred             CCCeeEEEEecCCCcEEEEEecCCcEEEE-Ecccceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 001258          859 PPAATFLAFHPQDNNIIAIGMDDSSIQIY-NVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       859 ~~~i~~l~~s~~d~~~la~g~~dg~v~iw-d~~~~~~~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~  936 (1113)
                      ...+..+.+.| ++.+++++. .|.+..- | ..++.-.. -.+-...++++.+.++++.++.+ ..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcC-CCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688899998 776766554 5655432 2 11221211 22344678999999998876654 567654322333221


Q ss_pred             ccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeC
Q 001258          937 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       937 ~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                        ..........  ....+..+.+.+++..++++.++.+. ...+.++.-..... ..-....+.+.|..+++.+++ +.
T Consensus       248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~  321 (334)
T PRK13684        248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ  321 (334)
T ss_pred             --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence              1111111010  11246788999999888888877665 34454544333221 111345778888877776654 45


Q ss_pred             CCcEEEEec
Q 001258         1016 DATVCVFSA 1024 (1113)
Q Consensus      1016 Dg~v~vwd~ 1024 (1113)
                      .|.|--|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            888877653

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=92.33  E-value=6.1  Score=39.10  Aligned_cols=155  Identities=14%  Similarity=0.202  Sum_probs=84.6

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC------cEEEE---E
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N  888 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg------~v~iw---d  888 (1113)
                      ....++.++.+..+++++..+|.+|++.  ..+.+.+|..- +.|..++++. .|++|++--++.      .+|+|   .
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            4455665554455555668899999988  34455666643 6799999999 899999864332      56665   2


Q ss_pred             cc--cceee-eeeccc---------------------ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc--ccc
Q 001258          889 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN--RFL  942 (1113)
Q Consensus       889 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~--~~~  942 (1113)
                      ..  ..+.+ ..+-||                     +.++.+++..|-..-|+.|+ ++++.+|.+........  ..+
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~l  175 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFL  175 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEE
Confidence            21  11111 122232                     23566777776544444444 45699998876433111  111


Q ss_pred             ccCCC---CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258          943 QIPTG---RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  980 (1113)
Q Consensus       943 ~~~~~---~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~  980 (1113)
                      .....   +.. ...+..+++  -+.|+|..++..++++.+
T Consensus       176 DFe~~l~~~~~-~~~p~~v~i--c~~yiA~~s~~ev~Vlkl  213 (215)
T PF14761_consen  176 DFERSLIDHID-NFKPTQVAI--CEGYIAVMSDLEVLVLKL  213 (215)
T ss_pred             echhhhhheec-CceEEEEEE--EeeEEEEecCCEEEEEEE
Confidence            11100   000 001122222  356777777777777765

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.25  E-value=4.2  Score=45.54  Aligned_cols=149  Identities=9%  Similarity=0.107  Sum_probs=76.9

Q ss_pred             cCeEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          903 KRITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s-----------~D~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      .....|+|.++|+++++-.           ..+ .|.+++-..+.-..........+.    .....+++.++| .++ +
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l----~~p~Gi~~~~~G-lyV-~   87 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL----SMVTGLAVAVGG-VYV-A   87 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC----CCccceeEecCC-EEE-e
Confidence            3467788988888877653           122 576666443221111111111111    235789999999 444 4


Q ss_pred             cCCeEEEE-eCCcc-----c--ee-eccccCC--CCCCeeEEEECCCCCEEEEEeCC-------------------CcEE
Q 001258          971 HETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATVC 1020 (1113)
Q Consensus       971 ~d~~v~v~-d~~~~-----~--~~-~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~D-------------------g~v~ 1020 (1113)
                      ....|..| |....     +  .+ ..+....  +......++|.|||.+.++-+..                   |.|.
T Consensus        88 ~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~  167 (367)
T TIGR02604        88 TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF  167 (367)
T ss_pred             CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE
Confidence            34445544 44211     1  11 1222211  23457889999999876655521                   3455


Q ss_pred             EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC
Q 001258         1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD 1068 (1113)
Q Consensus      1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D 1068 (1113)
                      -++.++++.. .+      ..|+.   .+..++|+| +|+++++-..+
T Consensus       168 r~~pdg~~~e-~~------a~G~r---np~Gl~~d~-~G~l~~tdn~~  204 (367)
T TIGR02604       168 RYNPDGGKLR-VV------AHGFQ---NPYGHSVDS-WGDVFFCDNDD  204 (367)
T ss_pred             EEecCCCeEE-EE------ecCcC---CCccceECC-CCCEEEEccCC
Confidence            5555544332 11      11322   233488988 68887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.18  E-value=17  Score=38.03  Aligned_cols=222  Identities=16%  Similarity=0.243  Sum_probs=126.4

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEcc------CCceeeeeeeeec-----ccCCeeEEEEcCCCCe----------e
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L  480 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~------~~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~----------~  480 (1113)
                      .-+.|+++|.+.+-++....+...+||..      ..+.+.  .++..     -....+.+.|+.....          .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~--vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLV--VVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceE--EEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            45789999999888888788899999986      122121  12221     2345777887754331          1


Q ss_pred             EEEEecCCCcEEEEeCCCCce-----eeEee-ccCcCE-EEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCCee--eee
Q 001258          481 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE  550 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~~~-----~~~~~-~h~~~v-~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~--~~~  550 (1113)
                      .++.+++||+|.-|...-+..     ...+. ...+.| ..+++.....+.+|+.+. ..++|.++|-.-.....  .+.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            367788999999998543322     11222 112223 344544444445555554 47888888754321110  010


Q ss_pred             CCCCceEEEEEccCC-----CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEE
Q 001258          551 APGRWCTTMAYSADG-----TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  625 (1113)
Q Consensus       551 ~~~~~v~~~~~s~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  625 (1113)
                      .+.  + -.-+.|-+     ..++       +....-++++..=+.|..-|.|-+||. .|..++.+...+....-..++
T Consensus       182 DP~--i-PagyAPFnIqnig~~ly-------VtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a  250 (336)
T TIGR03118       182 DPA--L-PAGYAPFNVQNLGGTLY-------VTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLA  250 (336)
T ss_pred             CCC--C-CCCCCCcceEEECCeEE-------EEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceee
Confidence            000  0 00011111     1111       111112333333455666789999997 678888886655555566777


Q ss_pred             ECC------CCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          626 FNK------DGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       626 ~s~------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      ..|      .+.+|+---.||+|..+|..++ +.+-.+
T Consensus       251 ~APa~FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L  287 (336)
T TIGR03118       251 IAPESFGSLSGALLVGNFGDGTINAYDPQSG-AQLGQL  287 (336)
T ss_pred             eChhhhCCCCCCeEEeecCCceeEEecCCCC-ceeeee
Confidence            765      5778888888999999999888 444444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA02790 Kelch-like protein; Provisional

Probab=92.10  E-value=7.9  Score=45.18  Aligned_cols=183  Identities=10%  Similarity=-0.020  Sum_probs=88.8

Q ss_pred             CCCEEEEEe-C-----CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccc--eeee
Q 001258          829 NDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVD--EVKS  896 (1113)
Q Consensus       829 ~~~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~--~~~~  896 (1113)
                      ++..+++|+ +     .++..||..+.+-..  .+...... .+++ .- ++.+.++|+.++  .+..||..++  ..+.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~-~~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~  347 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLY-ASGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP  347 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhc-ceEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence            455556665 2     247778877644322  22211111 2222 23 778888888643  5788887653  3333


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  973 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~  973 (1113)
                      .+.........+.  -+|+..+.||.++   .+..||..+.+   +........  +   .-...+..-+|+..++|  |
T Consensus       348 ~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~---W~~~~~m~~--~---r~~~~~~~~~~~IYv~G--G  415 (480)
T PHA02790        348 SLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ---WQFGPSTYY--P---HYKSCALVFGRRLFLVG--R  415 (480)
T ss_pred             CCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE---EEeCCCCCC--c---cccceEEEECCEEEEEC--C
Confidence            3321111112222  3678888887654   46778876532   221111110  0   01122334566666655  3


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCc
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1028 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~ 1028 (1113)
                      .+.+||..+.+....-......... +++ .-+|+..+.||.+     ..|.+||..+++
T Consensus       416 ~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            5778888776654322111101111 222 2367777777754     245566665543

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.05  E-value=16  Score=39.12  Aligned_cols=170  Identities=12%  Similarity=0.080  Sum_probs=93.8

Q ss_pred             eEEEEECCCCceeeeecCC------CCCeeEEEEecCCC----cEEEEEe-cCCcEEEEEcccceeeeeecccc------
Q 001258          840 KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAIGM-DDSSIQIYNVRVDEVKSKLKGHS------  902 (1113)
Q Consensus       840 ~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~------  902 (1113)
                      +|.+||+.+.+.++++.-.      .+....+.+...++    .++..+. ..+.+.|+|+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            6889999999888776432      34567787776332    3444443 34589999999877655543321      


Q ss_pred             -------------cCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCccccccc---------cccCCCCCCCCCCCce
Q 001258          903 -------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGWEKQKNRF---------LQIPTGRTPTAQSDTR  957 (1113)
Q Consensus       903 -------------~~V~~l~~s~---d~~~L~s~s~D~~v~iwd~~~~~~~~~~~---------~~~~~~~~~~~~~i~~  957 (1113)
                                   +.+.+++.+|   ++++|.-..-.+ -++|.+.+........         .+.. +...  .....
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g  190 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG--SQSDG  190 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cccC--CCCce
Confidence                         2366666654   666666655433 3455444321111000         0010 1110  24467


Q ss_pred             EEEccCCcEEEE-EcCCeEEEEeCCccc---eeeccccCCC-CCCeeEEEECC--CCCEEEEE
Q 001258          958 VQFHQDQIHFLV-VHETQLAIFETTKLE---CVKQWVPRES-SAPITHATFSC--DSQLVYAC 1013 (1113)
Q Consensus       958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~---~~~~~~~~~h-~~~v~~l~~s~--dg~~l~s~ 1013 (1113)
                      ++++++|..+++ .....|..|+..+.-   ....+..+.. -..+..+.+.+  +|.+.+..
T Consensus       191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            899999998888 588899999987621   1122222222 34677888888  66655544

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=91.75  E-value=19  Score=40.39  Aligned_cols=201  Identities=10%  Similarity=-0.043  Sum_probs=105.9

Q ss_pred             EecCCCEEEEEeCCeEEEEECCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-
Q 001258          826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-  902 (1113)
Q Consensus       826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-  902 (1113)
                      ...+++.++...+|.|.-+|..++..+.......  ..+.+-.+.. +|+ +.+++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            3446666666568888888888887654333221  2233333333 565 6678889999999988898887766555 


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc--CCeEEEEeC
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET  980 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~--d~~v~v~d~  980 (1113)
                      -.+..-..-.++ .+...+.|+.+...|-.+++..-.........     ..+..-....++..++...  ++.+.-+|.
T Consensus       143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLS-----LSIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccc-----cccccCceeecceEEEecCCCcceEEEEEc
Confidence            111111222233 23333356767766666655422111110000     0111111133444444444  456777788


Q ss_pred             Cccceeecccc---CCCCCCeeEEEECC-----CCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          981 TKLECVKQWVP---RESSAPITHATFSC-----DSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       981 ~~~~~~~~~~~---~~h~~~v~~l~~s~-----dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      .+|+.......   .+.. .+.......     .+.-++.++.++.+...+..+++.+-++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            77777655321   0111 010011111     112235677788899999999999988763

>PRK13684 Ycf48-like protein; Provisional

Probab=91.60  E-value=25  Score=38.74  Aligned_cols=157  Identities=11%  Similarity=-0.014  Sum_probs=84.8

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  981 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~  981 (1113)
                      .+.+.++.+.+++.+++++ ..|.+.. ..+.+. .........     ....+..+.+.+++..++++..+.+.+=..+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d  243 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDPD  243 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence            4568899999988666554 4554432 111111 011111111     1136789999999998888877776533344


Q ss_pred             ccceeeccccC--CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          982 KLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       982 ~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      .|..-......  .....+.++.+.+++..+++ +.+|.|. ...+.++.-..+....    +-....+  .+.|.. + 
T Consensus       244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~----~~~~~~~--~~~~~~-~-  313 (334)
T PRK13684        244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGE----EVPSNFY--KIVFLD-P-  313 (334)
T ss_pred             CCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCC----CCCcceE--EEEEeC-C-
Confidence            44432221111  11345788999998876554 4577665 3455555443332101    1111223  244443 3 


Q ss_pred             CEEEEEeCCCcEEEEec
Q 001258         1060 NEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~~ 1076 (1113)
                      +.....+..|.|.-|+-
T Consensus       314 ~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        314 EKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             CceEEECCCceEEEecC
Confidence            34455567898887763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.47  E-value=5.3  Score=44.79  Aligned_cols=151  Identities=13%  Similarity=0.055  Sum_probs=80.1

Q ss_pred             CCeeEEEEecCCCcEEEEEe-----------cCC-cEEEEEccc--ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258          860 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD  923 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D  923 (1113)
                      .....++|.+ +|+++++-.           ..+ .|.+++-..  |+  ....+.......+++++.++| +++ ++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            3467788888 777766542           223 677776432  22  123343334456889999988 444 4444


Q ss_pred             CcEEEEeCCCCcccc---ccccccCCCC-CCCCCCCceEEEccCCcEEEE-EcC-------------------CeEEEEe
Q 001258          924 SQLCVWSSDGWEKQK---NRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE  979 (1113)
Q Consensus       924 ~~v~iwd~~~~~~~~---~~~~~~~~~~-~~~~~~i~~~~~spdg~~l~~-~~d-------------------~~v~v~d  979 (1113)
                      ...++.+.+......   .......... .........++|.|||.+.++ +..                   +.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            433343544321111   1111111111 001134678999999987776 421                   3355555


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1016 (1113)
                      ..+++. ..+. .+ -.....++|+++|+++++-..+
T Consensus       171 pdg~~~-e~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKL-RVVA-HG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeE-EEEe-cC-cCCCccceECCCCCEEEEccCC
Confidence            554432 2222 22 3445789999999987764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.78  E-value=1  Score=31.42  Aligned_cols=32  Identities=22%  Similarity=0.218  Sum_probs=26.7

Q ss_pred             cceEEEEEcCCC---CeEEEEeCCCeEEEEEccCC
Q 001258          421 VSVNRVIWSPDG---SLFGVAYSRHIVQIYSYHGG  452 (1113)
Q Consensus       421 ~~V~~l~~spdg---~~las~~~d~~i~iwd~~~~  452 (1113)
                      +.|.++.|||+.   .+|+.+-..+.|.|+|++++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999844   58888888899999999863

It contains a characteristic DLL sequence motif.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=90.67  E-value=0.045  Score=59.20  Aligned_cols=145  Identities=18%  Similarity=0.203  Sum_probs=97.0

Q ss_pred             EEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          756 RLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       756 ~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      ...+-+.+..++.++.+..+..||-..                       +.+..    .........++|+.++..+++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le----~n~tg~aldm~wDkegdvlav   91 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILE----LNPTGKALDMAWDKEGDVLAV   91 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceecc----cCCchhHhhhhhccccchhhh
Confidence            344556666688888887777766331                       11110    013445566788888887776


Q ss_pred             Ee--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC
Q 001258          836 AS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA  913 (1113)
Q Consensus       836 ~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  913 (1113)
                      ..  .+.+.+||+.+....+.-.+....-.-+.|++ +...++.|...|.+.|++-.+.+.+...-.|..+++++++.+.
T Consensus        92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE  170 (615)
T KOG2247|consen   92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE  170 (615)
T ss_pred             hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence            65  68999999976433221112222223378998 8889999999999999998877766666569999999999987


Q ss_pred             CCEEEEEeCCCcEEEE
Q 001258          914 LNVLVSSGADSQLCVW  929 (1113)
Q Consensus       914 ~~~L~s~s~D~~v~iw  929 (1113)
                      + +.+.++.|..+.+-
T Consensus       171 d-~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  171 D-YVILCDCDNTLSVT  185 (615)
T ss_pred             c-eeeecCcHHHHHHh
Confidence            5 56667777655443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.41  E-value=5.4  Score=48.32  Aligned_cols=87  Identities=13%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCcEEEEecCC----------C--ceeeec-CCCccc-CCCcccCccceEEEEeCC--C
Q 001258          995 SAPITHATFSCDSQLVYACFLDATVCVFSAAN----------L--KLRCRI-NPSAYL-PAGVSSNVHPLVIAAHPQ--E 1058 (1113)
Q Consensus       995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~----------~--~~~~~~-~~~~~~-~~gh~~~v~~i~~~~~p~--d 1058 (1113)
                      .-.|..+.++|+|++|+..|..| |.|-.+..          |  +..|+. .....+ ...+...|  ..+.|+|.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i--~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEI--KQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceE--EEEEEcCCCCC
Confidence            45789999999999999988765 44444431          1  222222 222221 11222333  46999995  3


Q ss_pred             CCEEEEEeCCCcEEEEeccCCCcccc
Q 001258         1059 PNEFALGLSDGGVHVFEPLESEGKWG 1084 (1113)
Q Consensus      1059 ~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1084 (1113)
                      +..|++-..|+++++||+......+.
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~~p~~  186 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQHPWQ  186 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCCCCeE
Confidence            56788888999999999987664333

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.07  E-value=15  Score=40.74  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=89.4

Q ss_pred             EEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC------CceEEEEEecCCcEEEEEcCCCC
Q 001258          471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLG  544 (1113)
Q Consensus       471 v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~  544 (1113)
                      +-...+.+.+++..|+....++--|++.|+.+-.+.-|...|  +.+.|..      +.+.|+ |-.+..|.-.|.+-..
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g  548 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG  548 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence            333334444466677777888888999999999998887664  3444432      223344 4445555545554333


Q ss_pred             CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeE
Q 001258          545 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI  624 (1113)
Q Consensus       545 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  624 (1113)
                      ..............-.|+.-+                 .....++++++..|.|++||--.-+....+.+-+  ..|..+
T Consensus       549 NKi~v~esKdY~tKn~Fss~~-----------------tTesGyIa~as~kGDirLyDRig~rAKtalP~lG--~aIk~i  609 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGM-----------------TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLG--DAIKHI  609 (776)
T ss_pred             Cceeeeeehhccccccccccc-----------------cccCceEEEecCCCceeeehhhcchhhhcCcccc--cceeee
Confidence            211111111111111111111                 1223479999999999999965444334444333  368889


Q ss_pred             EECCCCCEEEEEECCCcEEEEEcC
Q 001258          625 RFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       625 ~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      ..+.+|+++++.+. ..+.+.|+.
T Consensus       610 dvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         610 DVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             EeecCCcEEEEeec-ceEEEEecc
Confidence            99999998887765 466666653

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.59  E-value=15  Score=43.74  Aligned_cols=116  Identities=7%  Similarity=0.039  Sum_probs=76.9

Q ss_pred             ceEEEEEcC--CCCeEEEEeCCCeEEEEEccC-------C----------ceeeeeeeeecccCCeeEEEEc--CCCCee
Q 001258          422 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL  480 (1113)
Q Consensus       422 ~V~~l~~sp--dg~~las~~~d~~i~iwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~~~~~~  480 (1113)
                      .|+.|....  +...|+.|.+||.|.+|.+++       .          ..+++...+. -...++.+++.  ...+  
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence            577776655  677899999999999997632       0          0112222333 33478999998  5555  


Q ss_pred             EEEEecCCCcEEEEeCCCC--ceee-EeeccCcCEEEEeeeecCC---ce-EEEEEecCCcEEEEEc
Q 001258          481 CVITCGDDKTIKVWDATNG--AKQY-IFEGHEAPVYSVCPHHKEN---IQ-FIFSTALDGKIKAWLY  540 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~--~~~~-~~~~h~~~v~~~~~~~~~~---~~-~l~s~~~dg~i~iwd~  540 (1113)
                      +||.++....|.||-....  +... .-..|...|-+|+|.....   |. .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7888888888888765432  1111 1112567788888876652   32 7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=89.54  E-value=11  Score=36.62  Aligned_cols=183  Identities=13%  Similarity=0.126  Sum_probs=96.8

Q ss_pred             CCcEEEEEecC--CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCC
Q 001258          871 DNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTG  947 (1113)
Q Consensus       871 d~~~la~g~~d--g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~  947 (1113)
                      ++.++.+.+.-  ..|++||+.+++.+..-.-....+.+=-...-|..+ +-.=.||.-.++|.++-++...     ..-
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~-----~~y  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGR-----FSY  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcc-----ccc
Confidence            56677666543  479999999988765433222222211111112222 2233577788888887433211     110


Q ss_pred             CCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCe---eEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          948 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPI---THATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       948 ~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v---~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                            .-.......|++.|+.+ ....++.-|.++..............+|   ..+.|- ||...|-.-.+..|..-+
T Consensus       130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence                  11334455666666664 3445666666655544333221112222   233332 676666666677777778


Q ss_pred             cCCCceeeecCCCcccCC----CcccCccceEEEEeCCCCCEEEEEe
Q 001258         1024 AANLKLRCRINPSAYLPA----GVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus      1024 ~~~~~~~~~~~~~~~~~~----gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      .++|+....+..+.-.+.    +....|.. -+++.|+.++++++|-
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN-GIA~~~~~~r~~iTGK  248 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN-GIAHDPQQDRFLITGK  248 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCcccccccccc-ceeecCcCCeEEEecC
Confidence            888888887765332221    11112222 4888886667777764

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=89.50  E-value=3.3  Score=44.80  Aligned_cols=170  Identities=11%  Similarity=0.062  Sum_probs=92.7

Q ss_pred             eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eee-ccccc----CeE-EEEEcCCCCEEEEEeCCC
Q 001258          852 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHSK----RIT-GLAFSHALNVLVSSGADS  924 (1113)
Q Consensus       852 ~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l-~~h~~----~V~-~l~~s~d~~~L~s~s~D~  924 (1113)
                      ++.+......+..+-..| ||+.|..-+. .++.|+++.+...- +++ ....+    .|+ .+..-..|.-|..++.||
T Consensus       213 i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG  290 (733)
T COG4590         213 IRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG  290 (733)
T ss_pred             hhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence            334555566788888999 8888876654 68889988764321 111 11111    222 222234567788899999


Q ss_pred             cEEEE-eCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEE
Q 001258          925 QLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1113)
Q Consensus       925 ~v~iw-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1113)
                      .|.-| |+..+............   -...++..+.-..+.+-++. ...|++.++.....+.+..-.   --..+.-++
T Consensus       291 ~vsQWFdvr~~~~p~l~h~R~f~---l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~~  364 (733)
T COG4590         291 LVSQWFDVRRDGQPHLNHIRNFK---LAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLVA  364 (733)
T ss_pred             ceeeeeeeecCCCCcceeeeccc---cCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCcceee
Confidence            99888 44443322111111111   10012222221222233333 456667666544333322111   123567789


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258         1003 FSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus      1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
                      +||.+.+|++-. .|.|+++.+++...-
T Consensus       365 ~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe  391 (733)
T COG4590         365 MSPNQAYLLSED-QGKIRLAQLENRNPE  391 (733)
T ss_pred             eCcccchheeec-CCceEEEEecCCCCC
Confidence            999999998753 678999998875443

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.39  E-value=1.3  Score=30.87  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=27.4

Q ss_pred             CCeeEEEEecCCC--cEEEEEecCCcEEEEEccc
Q 001258          860 PAATFLAFHPQDN--NIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       860 ~~i~~l~~s~~d~--~~la~g~~dg~v~iwd~~~  891 (1113)
                      +.+.++.|||..+  .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            3588999998555  6999999999999999985

It contains a characteristic DLL sequence motif.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.15  E-value=43  Score=37.63  Aligned_cols=151  Identities=10%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEccccee--eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-
Q 001258          863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-  939 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~-  939 (1113)
                      ..+..++ ++.++++|..-..++-||-  +..  ...-......++++.|.+++..++.+ .+|.+ +|..+.+..-.. 
T Consensus       242 ~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~  316 (398)
T PLN00033        242 STVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDF  316 (398)
T ss_pred             eeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCccccc
Confidence            3455666 6777776654333333442  221  11112234568999999998877655 56654 344444321100 


Q ss_pred             cccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCc
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDAT 1018 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~ 1018 (1113)
                      ........  .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.
T Consensus       317 ~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~  392 (398)
T PLN00033        317 DFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV  392 (398)
T ss_pred             ceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence            01111100  001247889999999999989888776654 3343322211 12224578899998887766655 5787


Q ss_pred             EEEE
Q 001258         1019 VCVF 1022 (1113)
Q Consensus      1019 v~vw 1022 (1113)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            6554

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.62  E-value=70  Score=39.40  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=64.6

Q ss_pred             EEEecCCCEEEEEeCCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc--ccceeeeeec
Q 001258          824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV--RVDEVKSKLK  899 (1113)
Q Consensus       824 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~--~~~~~~~~l~  899 (1113)
                      .|+.|...++.+|-...+++||+...+.++...  .....|+.+.+.   +..+++|..--.|..+..  ...++ ..+.
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence            466678889999889999999998777665533  234557777764   467777876555655443  33343 3332


Q ss_pred             c--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          900 G--HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       900 ~--h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      +  -..-|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus      1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence            2  22336666655 44567766666655555543

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=88.56  E-value=1.6  Score=29.94  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=24.0

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecC--CcEEEE
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW  386 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~d--g~i~iw  386 (1113)
                      .......-.+..|||||++++.+...+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334556778999999999988888777  766666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.28  E-value=7.7  Score=43.11  Aligned_cols=44  Identities=18%  Similarity=0.196  Sum_probs=32.6

Q ss_pred             cCccceEEEEeCCC--CCEEEEEeCCCcEEEEeccCCCccccCCCC
Q 001258         1045 SNVHPLVIAAHPQE--PNEFALGLSDGGVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus      1045 ~~v~~i~~~~~p~d--~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1088 (1113)
                      ..++-..++|+|+.  ...|..-+.|+.|++++++...+.|..+.+
T Consensus       164 ~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqpge  209 (741)
T KOG4460|consen  164 TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGE  209 (741)
T ss_pred             CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccCCC
Confidence            34444568899853  356777788999999999998877666554

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.66  E-value=39  Score=37.02  Aligned_cols=160  Identities=18%  Similarity=0.205  Sum_probs=89.2

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCe------EEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          750 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~------i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                      .-+.++.+.+.+++..+++.+++|.      +..+++..... ..........+.+-+. .|.....      ..-...+
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~-~G~~~~~------~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDP-DGQPFPK------NGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCC-CCCcCCc------CCCChhH
Confidence            3456789999977777888888877      55555543111 0111111111111121 1221110      1225678


Q ss_pred             EEEecCCCEEEEEe-C------CeEEEEECCCCceeeeec---------------CCCCCeeEEEEecCCCcEEEEEec-
Q 001258          824 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMD-  880 (1113)
Q Consensus       824 l~~s~~~~~l~~~s-d------g~i~vwd~~~~~~~~~~~---------------~~~~~i~~l~~s~~d~~~la~g~~-  880 (1113)
                      +++.++|.++++.- +      ..|+.++.. ++....+.               ......-+++++| +|+.|.++.+ 
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~  167 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES  167 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence            88888888887775 5      678888876 55544431               1234578899999 7885555432 


Q ss_pred             ----CC--c-------EEEE--Eccc-cee----eeeecc-----cccCeEEEEEcCCCCEEEE
Q 001258          881 ----DS--S-------IQIY--NVRV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVS  919 (1113)
Q Consensus       881 ----dg--~-------v~iw--d~~~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~L~s  919 (1113)
                          |+  .       ++|+  |..+ ++.    ...+..     ....|+.+.+-+++++|+-
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                22  1       4555  4443 222    223332     3567888999999887763

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=87.23  E-value=46  Score=35.69  Aligned_cols=231  Identities=13%  Similarity=0.057  Sum_probs=107.2

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK  895 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~  895 (1113)
                      ...++.|..+ ..+++|..+. .+...+.++.-..+.   .-......+.... ++..++ ++..|.|+.  ... |+.-
T Consensus        63 ~l~~I~f~~~-~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDGN-EGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW  136 (302)
T ss_dssp             EEEEEEEETT-EEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred             eEEEEEecCC-ceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence            3566777543 4455555553 334444444333322   1122333344433 343333 344555433  322 3222


Q ss_pred             -eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258          896 -SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  974 (1113)
Q Consensus       896 -~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~  974 (1113)
                       .....-.+.+..+..++||+++++++.-..+.-||-....   ........     ...|..+.|+|++...+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~---w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT---WQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS----EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc---ceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence             2233445778899999999998888766666677754311   11111111     14789999999999888888888


Q ss_pred             EEEEe-CCccceeec-ccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE
Q 001258          975 LAIFE-TTKLECVKQ-WVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV 1051 (1113)
Q Consensus       975 v~v~d-~~~~~~~~~-~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~ 1051 (1113)
                      |+.=+ ....+.-.. ... ......+..++|.+++...++|+ .|.+.+ ..+.|+--.+-....    ...+..+.  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~----~~~~n~~~--  280 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGE----NVPSNLYR--  280 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGT----TSSS---E--
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECcccc----CCCCceEE--
Confidence            88876 222222111 111 11234589999999988777665 554443 445555544433111    12234443  


Q ss_pred             EEEeCCCCCEEEEEeCCCcEEEE
Q 001258         1052 IAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus      1052 ~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
                      +.|.+  ++.-...+.||.|.-|
T Consensus       281 i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  281 IVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEcC--CCceEEECCCcEEEEe
Confidence            56654  2455555678877655

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.92  E-value=59  Score=36.65  Aligned_cols=158  Identities=9%  Similarity=0.112  Sum_probs=85.4

Q ss_pred             CCCCeeEEEEecCCCcEEEEeCCCCcee--eEe--eccCcCEEEEeee---ecCCceEEEEEecCCcEEEEEcCCCCCee
Q 001258          475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIF--EGHEAPVYSVCPH---HKENIQFIFSTALDGKIKAWLYDNLGSRV  547 (1113)
Q Consensus       475 ~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~--~~h~~~v~~~~~~---~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  547 (1113)
                      ++++. .++.||..|.++|++...+...  ..+  ..-..+|..+..-   ...+ ...++.-....+.+|.+.......
T Consensus        34 ~~~~d-~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~-~~~LaVLhP~kl~vY~v~~~~g~~  111 (418)
T PF14727_consen   34 PSGSD-KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSE-DLQLAVLHPRKLSVYSVSLVDGTV  111 (418)
T ss_pred             CCCcc-EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCC-cceEEEecCCEEEEEEEEecCCCc
Confidence            44444 7999999999999998643311  111  2245678777632   2222 233444556777777763221110


Q ss_pred             eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC----C-CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcC
Q 001258          548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT----T-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  622 (1113)
Q Consensus       548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~----~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  622 (1113)
                         .++.. ..+.      .++..+-......+++-|    . ..++.+-+.||.+.+|+-+.-.....+..   .--..
T Consensus       112 ---~~g~~-~~L~------~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPg  178 (418)
T PF14727_consen  112 ---EHGNQ-YQLE------LIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPG  178 (418)
T ss_pred             ---ccCcE-EEEE------EEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCc
Confidence               00000 0000      000000011111122211    1 24677788999999999766544444432   12234


Q ss_pred             eEEECCCCCEEEEEECCCcEEEEEc
Q 001258          623 RIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       623 ~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                      .+.|.+....+++++.+..+.-|..
T Consensus       179 Pl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  179 PLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             CeEEeecCCEEEEecCceeEEEecH
Confidence            6899998899999998888877754

>PHA02790 Kelch-like protein; Provisional

Probab=86.71  E-value=25  Score=41.02  Aligned_cols=53  Identities=13%  Similarity=-0.048  Sum_probs=28.4

Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----CcEEEEEcCCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDG  650 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  650 (1113)
                      |.+.+||..+++....-.....  ....-+..-++++.++|+.+     ..+..||..++
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~--r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYP--RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCC--ccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            3577889877665433221111  11122223367788888754     34667776655

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.68  E-value=24  Score=38.73  Aligned_cols=163  Identities=12%  Similarity=0.132  Sum_probs=89.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEecCCc------EEEEEccc--c--eee-----eeeccccc--------CeEEEEEcCCCC
Q 001258          859 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN  915 (1113)
Q Consensus       859 ~~~i~~l~~s~~d~~~la~g~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~  915 (1113)
                      -+.+..+.+.+.++.+++ .+++|.      ++.+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            345778888863554444 555666      55555443  1  001     11111112        234788888888


Q ss_pred             EEEEEeCC------CcEEEEeCCCCccccccccccCC---------CCCCCCCCCceEEEccCCcEEEEE------cCC-
Q 001258          916 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT---------GRTPTAQSDTRVQFHQDQIHFLVV------HET-  973 (1113)
Q Consensus       916 ~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~spdg~~l~~~------~d~-  973 (1113)
                      ++++.=.+      ..|+.++.+ +......  .++.         ...........++++|||+.|++.      .|+ 
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~--~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~  174 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRF--PVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP  174 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceE--ccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence            88877666      778888866 3332211  1111         112233567899999999955542      222 


Q ss_pred             -e-------EEE--EeCCc-cceeecccc--CC-----CCCCeeEEEECCCCCEEEEEe-----CCCcEEEEecC
Q 001258          974 -Q-------LAI--FETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1025 (1113)
Q Consensus       974 -~-------v~v--~d~~~-~~~~~~~~~--~~-----h~~~v~~l~~s~dg~~l~s~~-----~Dg~v~vwd~~ 1025 (1113)
                       .       +++  ||..+ +.....+..  +.     ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence             1       444  45544 323333322  11     357889999999999876421     23445555443

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.57  E-value=36  Score=40.18  Aligned_cols=91  Identities=11%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             EEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccc-cccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCC
Q 001258          908 LAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  981 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~  981 (1113)
                      ++|-|.|..++|-+.||.     |..+.-+.  .....+ +.....     ......+|......++++....+.+|...
T Consensus       252 LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~lr~~~d-----Ek~~~~~wn~~s~vlav~~~n~~~lwttk  324 (1243)
T COG5290         252 LSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDLRVGCD-----EKAFLENWNLLSTVLAVAEGNLLKLWTTK  324 (1243)
T ss_pred             cccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccccCCch-----hhhhhhhhhHHHHHHHHhhcceEEEEEcc
Confidence            789999999999886653     55555433  111111 111111     23466778777777777888899999877


Q ss_pred             ccceeeccccCCCCCCeeEEEECCCC
Q 001258          982 KLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus       982 ~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
                      +........  ..-..+.-+.|.|..
T Consensus       325 NyhWYLK~e--~~ip~~s~vkwhpe~  348 (1243)
T COG5290         325 NYHWYLKVE--RQIPGISYVKWHPEE  348 (1243)
T ss_pred             ceEEEEEEe--ecCCCcceeeecccc
Confidence            654332221  113345556777643

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=86.37  E-value=2.8  Score=49.53  Aligned_cols=123  Identities=15%  Similarity=0.167  Sum_probs=73.2

Q ss_pred             eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCC--CcccccccccCCCcceEEEEEc--CCCCeEEEEeCCCeEEEE
Q 001258          372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGAC--SMPLQAALVKDPGVSVNRVIWS--PDGSLFGVAYSRHIVQIY  447 (1113)
Q Consensus       372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~V~~l~~s--pdg~~las~~~d~~i~iw  447 (1113)
                      .+|+.+..||.|.+|.+++=.......  .-+....  .......+...-...++.+++.  ...++||++++...|.||
T Consensus       115 EVLl~c~DdG~V~~Yyt~~I~~~i~~~--~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF  192 (717)
T PF08728_consen  115 EVLLLCTDDGDVLAYYTETIIEAIERF--SEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF  192 (717)
T ss_pred             eEEEEEecCCeEEEEEHHHHHHHHHhh--ccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence            378888999999999874311000000  0000000  0000001122234589999998  888999999988888888


Q ss_pred             EccCCceeeeeeeeecccCCeeEEEEcCCCC----eeEEEEecCCCcEEEEeC
Q 001258          448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK----QLCVITCGDDKTIKVWDA  496 (1113)
Q Consensus       448 d~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~----~~~l~s~s~d~~i~iwd~  496 (1113)
                      -......-.....-..|...|-+|+|.++..    ...+++++-.|.+.+|++
T Consensus       193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            6654211111101113667899999987651    136888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.33  E-value=11  Score=47.73  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=42.2

Q ss_pred             ceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          956 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       956 ~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                      .+..+......+.....+.+.+|+.........+...++.       .++++..++++-.||.+..||...+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence            3344444444444444555556655544444444332222       288999999999999999999999866

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=86.25  E-value=1.2e+02  Score=39.88  Aligned_cols=149  Identities=13%  Similarity=0.182  Sum_probs=89.3

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      |...++.|.-+++|++ +=.  .|+.++.||..+.         .|...          -..-...++.+.-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~-lRl--Hd~~LY~~d~~~~---------~Wk~~----------~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQ-LRL--HDDRLYQFDPNTA---------RWKPP----------PDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCe-EEe--ecCceeeeccccc---------eecCC----------CCcccchhhhhcccCCCceEe
Confidence            6677788888888886 322  6888888887754         23210          011223555666666777766


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC------ceee--Eeecc
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG------AKQY--IFEGH  508 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~------~~~~--~~~~h  508 (1113)
                         .++. .|-|+..+..-.      .....|.+...+++|.- .+.++-...++.+|++...      ++..  .+.+-
T Consensus       419 ---k~~~-~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 ---KDDD-TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             ---cCCC-ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence               2221 144555544221      12346777888899983 3667777777899998753      1112  22333


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      .....+|.++  ++  .|+.+..+|.++.=++..
T Consensus       488 ~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  488 KAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             chhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            3345555543  32  688888899888777654

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.11  E-value=3.9  Score=41.60  Aligned_cols=74  Identities=15%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             EcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc-------CCCcceEEEEEcCCCCeEEEE
Q 001258          366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       366 ~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~las~  438 (1113)
                      +..++.+ |.+-+.+|.+++||+.+++.+... ..+           ..++.       .....|..+.++.+|.-|++-
T Consensus        18 l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~Si-----------~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l   84 (219)
T PF07569_consen   18 LECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VSI-----------APLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL   84 (219)
T ss_pred             EEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-ccH-----------HHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence            5567886 666688999999999998876531 111           11222       466789999999999888776


Q ss_pred             eCCCeEEEEEccCCc
Q 001258          439 YSRHIVQIYSYHGGD  453 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~  453 (1113)
                      + +|....|+..=+.
T Consensus        85 s-ng~~y~y~~~L~~   98 (219)
T PF07569_consen   85 S-NGDSYSYSPDLGC   98 (219)
T ss_pred             e-CCCEEEeccccce
Confidence            5 5778888876543

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=85.35  E-value=37  Score=33.84  Aligned_cols=148  Identities=12%  Similarity=0.139  Sum_probs=85.3

Q ss_pred             cEEEEEecCCcEEEEEcc--cceeeeeecccccCeEEEEEcCCCCEEEEEeCC---C---cEEEE-eCCCCccccccccc
Q 001258          873 NIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S---QLCVW-SSDGWEKQKNRFLQ  943 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D---~---~v~iw-d~~~~~~~~~~~~~  943 (1113)
                      ..|+.+.....|.+|++.  ..+.+..|..- +.|..+.++..|++|+|-=.+   .   .+|+| |.+...........
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455555667789999998  34566666644 889999999999999986332   2   45655 22211000000000


Q ss_pred             cCCC------------------CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccce-ee-----ccc---cCCC-C
Q 001258          944 IPTG------------------RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES-S  995 (1113)
Q Consensus       944 ~~~~------------------~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~-~~-----~~~---~~~h-~  995 (1113)
                      ...|                  ..+....+.+++..|-..-|+++.++.+.+|.+..... ..     .|.   ...| +
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~  187 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN  187 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence            0000                  00111356788888877778888899999998765444 11     111   0112 2


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          996 APITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      -.+..++|.  +.|+|..+ +..++|+.+
T Consensus       188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  188 FKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             ceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence            234555553  55777665 666777665

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.11  E-value=4.1  Score=44.14  Aligned_cols=159  Identities=13%  Similarity=0.088  Sum_probs=97.6

Q ss_pred             CCCCccEEEEecCCCEEEEEeCCeEEEEECCCCcee-eee-cCCCC----Cee-EEEEecCCCcEEEEEecCCcEEEE-E
Q 001258          817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N  888 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~-~~~-~~~~~----~i~-~l~~s~~d~~~la~g~~dg~v~iw-d  888 (1113)
                      ....+..+-..|||+.+.+-+..++.|+++.+...- +++ ....+    .|+ .+..-. +|.-|.+++.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            456678889999999999988899999998764332 111 11111    122 222223 66777889999988877 4


Q ss_pred             cccc-e----eeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          889 VRVD-E----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       889 ~~~~-~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      +..+ .    .++.++-...++..+.--.+.+-+++-+..|++..+.....+..   .....      ...+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~------~~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERA------YQAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhh------hcCcceeeeCcc
Confidence            4332 1    11222222233443333334456777788888887765442211   11111      124678999999


Q ss_pred             CcEEEEEcCCeEEEEeCCccce
Q 001258          964 QIHFLVVHETQLAIFETTKLEC  985 (1113)
Q Consensus       964 g~~l~~~~d~~v~v~d~~~~~~  985 (1113)
                      +.++++-..++++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998899999998876543

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.58  E-value=19  Score=39.51  Aligned_cols=141  Identities=7%  Similarity=0.071  Sum_probs=84.1

Q ss_pred             eEEEEecCCCcEEEEEecCCcEEEEEccc--ceeeeee-cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 001258          863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  939 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~~~~l-~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~  939 (1113)
                      +.+-|.. .++.|+ +...|.+.=|-+..  ......+ ....++|.++.||+|.+.||.--.|.+|.+++....+....
T Consensus        26 ngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            4455543 333333 33445555565442  1222222 33567999999999999999999999999999855432211


Q ss_pred             cccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccc-eeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      ..    ..+......|....|+.. .-+|...+..+.+|.....+ .++..  ..|...|.-..|.++-+.++.
T Consensus       104 ~~----~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlV--ks~~~nvnWy~yc~et~v~LL  170 (657)
T KOG2377|consen  104 YT----QECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLV--KSHNLNVNWYMYCPETAVILL  170 (657)
T ss_pred             HH----HHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhh--hhcccCccEEEEccccceEee
Confidence            11    111111235788888877 56666667777777654322 22222  255777888888888776443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=84.24  E-value=84  Score=36.01  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=47.2

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      ..+|.++.+..+|.+. +|+.|| +..||..+++.++..  .......|.++.-+-.|+   +..|+.+| |.+.+.+.
T Consensus       164 d~~V~aLv~D~~g~lW-vgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         164 DTPVVALVFDANGRLW-VGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             CccceeeeeeccCcEE-EecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            3478889998888554 466777 778888887765421  112335788888888887   66676554 66666443

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=83.57  E-value=37  Score=39.51  Aligned_cols=120  Identities=14%  Similarity=0.148  Sum_probs=63.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc--------------CC
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--------------ET  973 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~--------------d~  973 (1113)
                      +...++|.+++..+  ..++.+|+... ....  .....+..   ..-..+..-|+|.+|+.+.              +.
T Consensus       153 ~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D  224 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDIDELPNGNLLILASETKYVDEDKDVDTVED  224 (477)
T ss_dssp             EEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-
T ss_pred             eeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccEECCCCCEEEEEeecccccCCCCccEecC
Confidence            66678888887665  66777777652 1111  11111100   0124577788999888754              23


Q ss_pred             eEEEEeCCccceeeccccCCC-------------------------CCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCC
Q 001258          974 QLAIFETTKLECVKQWVPRES-------------------------SAPITHATFSC-DSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h-------------------------~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      .|..+| .+|+.+..|....|                         -..+.++.+.+ ++.+|+++=.-..|...|..++
T Consensus       225 ~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~  303 (477)
T PF05935_consen  225 VIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG  303 (477)
T ss_dssp             EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred             EEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence            466667 77777666543222                         13478899988 5556666555568999999999


Q ss_pred             ceeeecCCC
Q 001258         1028 KLRCRINPS 1036 (1113)
Q Consensus      1028 ~~~~~~~~~ 1036 (1113)
                      +....+..+
T Consensus       304 ~i~Wilg~~  312 (477)
T PF05935_consen  304 KIKWILGPP  312 (477)
T ss_dssp             -EEEEES-S
T ss_pred             cEEEEeCCC
Confidence            998887743

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.56  E-value=35  Score=31.07  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecC--------CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVG--------SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--  430 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--  430 (1113)
                      |..-.|.....- |++++..|.|.|.+..        ....+.                    +-.-...|++++-.+  
T Consensus         1 VaiGkfDG~~pc-L~~aT~~gKV~IH~ph~~~~~~~~~~~~i~--------------------~LNin~~italaaG~l~   59 (136)
T PF14781_consen    1 VAIGKFDGVHPC-LACATTGGKVFIHNPHERGQRTGRQDSDIS--------------------FLNINQEITALAAGRLK   59 (136)
T ss_pred             CeEEEeCCCcee-EEEEecCCEEEEECCCccccccccccCcee--------------------EEECCCceEEEEEEecC


Q ss_pred             ---CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          431 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       431 ---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~-~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                         +...|+.|+... +..||+.....+-    .+.-.+.|+++.+-.-+. ..-++..+.+..|.-+|.+-.+...+..
T Consensus        60 ~~~~~D~LliGt~t~-llaYDV~~N~d~F----yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   60 PDDGRDCLLIGTQTS-LLAYDVENNSDLF----YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             CCCCcCEEEEeccce-EEEEEcccCchhh----hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec


Q ss_pred             c
Q 001258          507 G  507 (1113)
Q Consensus       507 ~  507 (1113)
                      +
T Consensus       135 g  135 (136)
T PF14781_consen  135 G  135 (136)
T ss_pred             c

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.39  E-value=98  Score=38.27  Aligned_cols=249  Identities=11%  Similarity=0.042  Sum_probs=116.5

Q ss_pred             EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258          757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  836 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  836 (1113)
                      .++..-|+.+.+|+.+|.+.+|.+...........          ..........+    +..+|..+...+.-.++.+-
T Consensus        20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~----------~~~~~~~~~~~----~kk~i~~l~~~~~~~~ll~l   85 (877)
T KOG2063|consen   20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL----------VTETVKFEKEF----SKKPINKLLVCASLELLLIL   85 (877)
T ss_pred             hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh----------hcchhHHhhhh----ccchhHHHhhcchhcchhee
Confidence            34555678899999999999998764322111000          00001111111    35677777777777788888


Q ss_pred             eCCeEEEEECCCCceeeeecCCCCCeeEEEEec--C-CC--cEEEEEe-cCC-cEEEEEcccceeeeeecccccCeEEEE
Q 001258          837 SGGKISLFNMMTFKTMATFMPPPPAATFLAFHP--Q-DN--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA  909 (1113)
Q Consensus       837 sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~--~-d~--~~la~g~-~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~  909 (1113)
                      +|+.|.++++.+.+.... ..+-..+...++.-  . .+  .+.+... ... ....|+-..+..+..--+-.....+++
T Consensus        86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  164 (877)
T KOG2063|consen   86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA  164 (877)
T ss_pred             cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence            899999999877655211 11111111111110  0 11  1222222 111 222233222222222112222233333


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeec-
Q 001258          910 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-  988 (1113)
Q Consensus       910 ~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~-  988 (1113)
                      |  .+..+.++-.+....+|.-.++.............     ..-..+.--.++..++.+.|+...+-|.......+. 
T Consensus       165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~  237 (877)
T KOG2063|consen  165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT  237 (877)
T ss_pred             c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence            3  34455555444444555444432111111111000     112344455667677777777777777443221111 


Q ss_pred             cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          989 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       989 ~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +.-   .....++.+  +.-|+++-+ ++.|.||+..++.++.++
T Consensus       238 l~w---s~~P~~v~~--~~PYlIa~~-~~~veI~s~~~~qlvQSI  276 (877)
T KOG2063|consen  238 LVW---SEVPLSVVV--ESPYLIALL-DRSVEIRSKLDGQLVQSI  276 (877)
T ss_pred             eEe---cccchhhcc--cCceEEEEc-cccEEEEeccCHHHhhcc
Confidence            000   111122221  344666655 669999999999887666

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.23  E-value=14  Score=46.27  Aligned_cols=171  Identities=13%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             CCCCCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258          344 PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1113)
Q Consensus       344 ~~~~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  423 (1113)
                      ..++|..+.....|...=+.|-+=|.=.+.-+  +.|+.+.+|+++++.....                   +.+-...|
T Consensus        64 v~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtI  122 (1311)
T KOG1900|consen   64 VVNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTI  122 (1311)
T ss_pred             cccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhh
Confidence            45566666666666665566666665443333  4689999999998655442                   33333344


Q ss_pred             EEEEE--------cCCCCeEEEEeCCCeEEEEEccCCceeeee------eeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258          424 NRVIW--------SPDGSLFGVAYSRHIVQIYSYHGGDEVRQH------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1113)
Q Consensus       424 ~~l~~--------spdg~~las~~~d~~i~iwd~~~~~~~~~~------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  489 (1113)
                      ..|..        -|.=++|..-..--.|.|+-+.-.+.....      .++.-..-.|+|+....+|+  +|.+ |.||
T Consensus       123 l~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~-G~dg  199 (1311)
T KOG1900|consen  123 LKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFA-GRDG  199 (1311)
T ss_pred             eeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEe-ecCC
Confidence            44443        233334444444445666654422211111      12222345789999888888  4554 4555


Q ss_pred             cEEEEeCC----CC---c-e----------------eeEee-ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          490 TIKVWDAT----NG---A-K----------------QYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       490 ~i~iwd~~----~~---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                        .+|.+.    +|   + |                +..+. .+..+|..+.+..+.  ..+.+-+..|+|.+||+..
T Consensus       200 --~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR--~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  200 --NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR--NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             --CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc--ceeeeeccCceEEEEEccC
Confidence              455442    21   1 1                11122 467789888865443  6899999999999999976

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.14  E-value=5.9  Score=38.67  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=25.1

Q ss_pred             cceEEEEEcCCC------CeEEEEeCCCeEEEEEccC
Q 001258          421 VSVNRVIWSPDG------SLFGVAYSRHIVQIYSYHG  451 (1113)
Q Consensus       421 ~~V~~l~~spdg------~~las~~~d~~i~iwd~~~  451 (1113)
                      ..|.+++|||-|      -+||+...++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            379999999943      3688889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.96  E-value=11  Score=47.11  Aligned_cols=147  Identities=14%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             ecCCcEEEEEcccceeeeeecccccCeEEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCcccc--ccccccCCCC
Q 001258          879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQK--NRFLQIPTGR  948 (1113)
Q Consensus       879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~L~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~~~  948 (1113)
                      +.|..+.+|+..++...+.+.+-+..|..+..-        |.=++|...+.--.|.++-+.-.+...  ........ .
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence            457889999999988888888877788777643        233444444445557776554332211  11111100 0


Q ss_pred             CCCCCCCceEEEccCCcEEEEEcCCeEEE--EeCCcc---c-e-------------eec-ccc-CCCCCCeeEEEECCCC
Q 001258          949 TPTAQSDTRVQFHQDQIHFLVVHETQLAI--FETTKL---E-C-------------VKQ-WVP-RESSAPITHATFSCDS 1007 (1113)
Q Consensus       949 ~~~~~~i~~~~~spdg~~l~~~~d~~v~v--~d~~~~---~-~-------------~~~-~~~-~~h~~~v~~l~~s~dg 1007 (1113)
                      ......|.++....+|+.+.+|.||.+.-  |....+   + |             +.. +.. ..+..+|..+++....
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            01113578888889999999998885442  221111   1 1             000 111 2567799999999888


Q ss_pred             CEEEEEeCCCcEEEEecCC
Q 001258         1008 QLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus      1008 ~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      ..+++-+.-|+|.+|++..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8999999999999999976

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=82.76  E-value=11  Score=38.31  Aligned_cols=74  Identities=14%  Similarity=0.078  Sum_probs=48.2

Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCC-------CcccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258         1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA-------GVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~-------gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
                      +..++.+|++.+.+|.+++||+.+++.+..-..-..+-.       .....|..  +... .+|.-|++-+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~--~~lt-~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITS--CSLT-SNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEE--EEEc-CCCCEEEEEe-CCCEEEec
Confidence            445788999999999999999999887754421111111       22233443  3333 4677777655 68889998


Q ss_pred             ccCCC
Q 001258         1076 PLESE 1080 (1113)
Q Consensus      1076 ~~~~~ 1080 (1113)
                      ..=+.
T Consensus        94 ~~L~~   98 (219)
T PF07569_consen   94 PDLGC   98 (219)
T ss_pred             cccce
Confidence            76654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.71  E-value=39  Score=42.99  Aligned_cols=35  Identities=34%  Similarity=0.562  Sum_probs=28.3

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcce
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER  393 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~  393 (1113)
                      ......++|+|... ++|.|+..|.|.++-...-+.
T Consensus        35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCcceeeccccc-eEEEEEecccEEEecccceEE
Confidence            34667889999998 799999999999998654443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=81.75  E-value=1e+02  Score=35.30  Aligned_cols=154  Identities=15%  Similarity=0.152  Sum_probs=79.4

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      +.+.-..+|.++.|.-.|.  +-.|+.|| +..+|..+++.+....                  ......|..+.-+-.|
T Consensus       159 r~ll~d~~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg  217 (671)
T COG3292         159 RPLLKDTPVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQG  217 (671)
T ss_pred             cccccCccceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcC
Confidence            3344678899999999997  44566665 5577877777765310                  0111356666666555


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccC--
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE--  509 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~--  509 (1113)
                      + |-+|+.+| |.+.+..+.+.....  ..--.+.|..+.-..+|.   +-.|+..|..+ .....+...... +.|.  
T Consensus       218 ~-LWVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r-~~l~rq~Lq~~~~~~~l~~  289 (671)
T COG3292         218 R-LWVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWR-TRLPRQGLQIPLSKMHLGV  289 (671)
T ss_pred             c-EEEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeeccccee-EecCCCCccccccccCCcc
Confidence            4 45566666 777776663221110  001233455555445554   45555555332 233333332222 2222  


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      +.|.++  .-+.+| -+-+++.+|.+++=
T Consensus       290 S~vnsL--~~D~dG-sLWv~t~~giv~~~  315 (671)
T COG3292         290 STVNSL--WLDTDG-SLWVGTYGGIVRYL  315 (671)
T ss_pred             ccccce--eeccCC-CEeeeccCceEEEe
Confidence            223333  234444 36666666655544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=81.74  E-value=95  Score=34.81  Aligned_cols=160  Identities=13%  Similarity=0.056  Sum_probs=82.8

Q ss_pred             CCCEEEEEeCCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc---cC
Q 001258          829 NDSYVMSASGGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS---KR  904 (1113)
Q Consensus       829 ~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~---~~  904 (1113)
                      +|+.++...++.+..+|..+++......... ..+..-..-. ++ .+..++.+|.+.-.+..+|+.+-....-.   ..
T Consensus       111 ~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~-~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~  188 (370)
T COG1520         111 DGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVG-DG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLS  188 (370)
T ss_pred             CCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEc-Cc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccc
Confidence            7875555558889999998888887776555 1122222222 33 33334467888888888887765433211   11


Q ss_pred             eEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCC--CCCCceEEEccCCcEEEEEcCCeEEEEeC
Q 001258          905 ITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPT--AQSDTRVQFHQDQIHFLVVHETQLAIFET  980 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~spdg~~l~~~~d~~v~v~d~  980 (1113)
                      +..-....++ .+..+..  ++.+.-.|..++............+....  ...+..-...-++...+.+.++.+...+.
T Consensus       189 ~~~~~~~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~  267 (370)
T COG1520         189 IYGSPAIASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDA  267 (370)
T ss_pred             cccCceeecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEc
Confidence            1111112233 3333333  55566666666654433222222222110  00111112222333334456777888899


Q ss_pred             Cccceeecccc
Q 001258          981 TKLECVKQWVP  991 (1113)
Q Consensus       981 ~~~~~~~~~~~  991 (1113)
                      .+++.+..+..
T Consensus       268 ~~G~~~W~~~~  278 (370)
T COG1520         268 DTGELIWSFPA  278 (370)
T ss_pred             CCCceEEEEec
Confidence            98888777653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.69  E-value=91  Score=34.54  Aligned_cols=121  Identities=10%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      ....++|.++.||+|.+.||+--.+++|.+++....+... ...+.+.....|....|+..-.   ++--+. .-+-+|-
T Consensus        63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e---~A~i~~-~G~e~y~  138 (657)
T KOG2377|consen   63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTE---IAFITD-QGIEFYQ  138 (657)
T ss_pred             ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCee---EEEEec-CCeEEEE
Confidence            3456699999999999999999999999999985433221 1112223345688889987643   333332 2355555


Q ss_pred             CCC-CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC
Q 001258          496 ATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD  541 (1113)
Q Consensus       496 ~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  541 (1113)
                      ... .+.++..+.|...|+-..|.+..+--+|.++-..+++.=+.++
T Consensus       139 v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~  185 (657)
T KOG2377|consen  139 VLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFR  185 (657)
T ss_pred             EchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEe
Confidence            432 3345555667777777776665542233333234444434333

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=81.63  E-value=22  Score=41.30  Aligned_cols=65  Identities=18%  Similarity=0.351  Sum_probs=41.9

Q ss_pred             CccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258          707 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  781 (1113)
Q Consensus       707 ~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~  781 (1113)
                      .+...|.+..++.+..||+|++|+.........+..        ..+-..+.|...|  +++..+|..+.-|.-.
T Consensus        19 aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~--------~~p~~nlv~tnhg--l~~~tsdrr~la~~~d   83 (1636)
T KOG3616|consen   19 AIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE--------AKPKENLVFTNHG--LVTATSDRRALAWKED   83 (1636)
T ss_pred             eeeecCCCceEEEEecCCcEEEEeecccchhhhhhh--------cCCccceeeeccc--eEEEeccchhheeecc
Confidence            344457788999999999999999875443333221        1223455666666  6666777666666543

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=81.52  E-value=1.5e+02  Score=37.00  Aligned_cols=174  Identities=11%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             CCCCccEEEEe---c----CCCEEEEEeCCeEEEEECCCCc---------------eeeeecC---CCCCeeEEEEecCC
Q 001258          817 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTFK---------------TMATFMP---PPPAATFLAFHPQD  871 (1113)
Q Consensus       817 ~~~~v~~l~~s---~----~~~~l~~~sdg~i~vwd~~~~~---------------~~~~~~~---~~~~i~~l~~s~~d  871 (1113)
                      ...+|..|+|.   .    ..++|++-....+.|+...-.+               .+..+..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46778888887   2    2347777777778888722111               1122221   12346678888877


Q ss_pred             CcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCC
Q 001258          872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  951 (1113)
Q Consensus       872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~  951 (1113)
                      .+.||+.+..|...||++.....     .+. ....          +.....|.| +.|...-                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~~~----------~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SNLR----------LSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccc-----cCC-ccee----------eccCCCccc-cCCCccc-----------------
Confidence            77888888888888888721110     000 1111          111122222 2222210                 


Q ss_pred             CCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEeCCCcEEEEecCC
Q 001258          952 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       952 ~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                       ..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++.. +++.- ....|...++..
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~  277 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKS  277 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccC
Confidence             13357888999999999999999999999887644233234467899999888722 22222 236788888876

These proteins are found in fungi.

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=81.34  E-value=6.1  Score=34.61  Aligned_cols=78  Identities=22%  Similarity=0.285  Sum_probs=51.9

Q ss_pred             CcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhccCccccCcccchhhHHHHHHH
Q 001258            2 SSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQ   79 (1113)
Q Consensus         2 ~~~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   79 (1113)
                      ..+.+|=+..|.+|++..|   +.+.+++|.||++.  ...|-         +.++.|.......       ..-...+.
T Consensus        32 ~~L~~E~~~Fi~~Fi~~rG---nlKe~e~~lgiSYPTvR~rLd---------~ii~~lg~~~~~~-------~~~~~~~~   92 (113)
T PF09862_consen   32 ARLSPEQLEFIKLFIKNRG---NLKEMEKELGISYPTVRNRLD---------KIIEKLGYEEDEE-------EEEEDERK   92 (113)
T ss_pred             hcCCHHHHHHHHHHHHhcC---CHHHHHHHHCCCcHHHHHHHH---------HHHHHhCCCCCcc-------cccchhHH
Confidence            3466777888999999999   89999999999996  22222         2223333211111       11234577


Q ss_pred             HHHHHHhcCC--HHHHHHHHH
Q 001258           80 KYLEALDKHD--RAKAVEILV   98 (1113)
Q Consensus        80 ~~lell~~~~--~~~a~~~l~   98 (1113)
                      ..|+.|+.|+  .++|++.|+
T Consensus        93 ~IL~~L~~GeIs~eeA~~~Lk  113 (113)
T PF09862_consen   93 EILDKLEKGEISVEEALEILK  113 (113)
T ss_pred             HHHHHHHcCCCCHHHHHHHhC
Confidence            8899999998  667887763

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=81.20  E-value=42  Score=35.52  Aligned_cols=93  Identities=10%  Similarity=0.165  Sum_probs=58.0

Q ss_pred             CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe------CCCeEEEEEccCCce
Q 001258          381 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE  454 (1113)
Q Consensus       381 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~i~iwd~~~~~~  454 (1113)
                      ..|++||..+.+-..                   .-.+-.+.|++|.|..+.++++.|.      ....+..||..+...
T Consensus        16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            468999988765432                   2234567899999997777777774      355688999988653


Q ss_pred             eeeeeeeec-----ccCCeeEEEEcCCCCeeEEEEec-CCC--cEEEEeC
Q 001258          455 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDA  496 (1113)
Q Consensus       455 ~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s-~d~--~i~iwd~  496 (1113)
                      .    .+.+     -.++|..+.+..++..-+.+.|. .++  .|..||=
T Consensus        77 ~----~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   77 S----SLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             e----ecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence            2    2322     24688888875433321444443 333  4666663

>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]

Probab=80.95  E-value=97  Score=38.50  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=46.7

Q ss_pred             CCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecc----ccC---------C----CCCCeeEEEECCCCCEEEEEeC
Q 001258          954 SDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW----VPR---------E----SSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       954 ~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~----~~~---------~----h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                      .|.++....-+.+++. -.||.|.++|..+.+.+...    ...         |    +...+..++|||.+..++.-..
T Consensus       261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~  340 (753)
T PF11635_consen  261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE  340 (753)
T ss_pred             eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence            3455655566777776 49999999999888665444    110         0    1224456889999999999999


Q ss_pred             CCcEE
Q 001258         1016 DATVC 1020 (1113)
Q Consensus      1016 Dg~v~ 1020 (1113)
                      ||.+.
T Consensus       341 ~~~~~  345 (753)
T PF11635_consen  341 DGKTK  345 (753)
T ss_pred             CCCce
Confidence            99866

It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=80.91  E-value=37  Score=38.11  Aligned_cols=93  Identities=10%  Similarity=0.098  Sum_probs=61.9

Q ss_pred             ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC---CEEEEEecC
Q 001258          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDD  595 (1113)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d  595 (1113)
                      .++.|..++-.|.+|.+.++=.+..+.-..+......|.|-.++-+ .++|.....-.+.-.+|+|+.   ..|+.-+.|
T Consensus       111 ~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~-~~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd  189 (741)
T KOG4460|consen  111 LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA-ERFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD  189 (741)
T ss_pred             ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc-ceeeccCCceeeeeccccCCccCCceEEEEecC
Confidence            3456678888888998777643433333344444444555555444 355555555566678899975   778889999


Q ss_pred             CcEEEEECCCCceEEEE
Q 001258          596 FSIKFWDMDSVQLLTSI  612 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~  612 (1113)
                      +.|++||+...+.+...
T Consensus       190 nviRiy~lS~~telylq  206 (741)
T KOG4460|consen  190 NVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             cEEEEEecCCcchhhcc
Confidence            99999999877666443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1113
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		8e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		9e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		9e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		9e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		6e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		8e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 98   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 157  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 205  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 100  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 159  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 207  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 870  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
             D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 71   SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 130
Query: 930  SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 983
                          + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 131  -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 984  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 178  QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 81   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 140  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 188  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 221

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 93   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 152  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 200  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 77   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 136  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 184  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 217

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 870  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 929
             D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 74   SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 930  SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 983
                          + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 134  -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 984  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 181  QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1016
            C+K  +  + + P++   FS + + + A  LD
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 602 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 931  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 984
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 985  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1019
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
           SV  V +SPDG     A     V++++ +G  ++ Q L    H   VN +AF  P+ Q  
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
           + +  DDKT+K+W+  NG       GH + V+ V      + Q I S + D  +K  L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
             G  +                   +T  G      GV  F        +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 602 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 644
           + +  QLL ++    G  +S R + F+ DG  +A +++D  +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 557
             +NI++I + + D  +  W         + G   DY        E P       G   +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 558 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 596
               S  G     G    +L V                       +D  + R ++A  D 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 597 SIKFWDMDSVQLLTSIDADGGLPASPRI 624
           +I+ WD+++ +L+ ++     L    R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + LW      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 519 HKENIQFIFSTALDGKIKAW 538
             +NI++I + + D  +  W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 405
           D+ KT +   N+      +DFHP +   +L     G + +W   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 406 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 465
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 585 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 614
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 397 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 455
           R+  VWD+ +   + L+  LV     +VN V    D      A     +++++    + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 456 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 515
           R    ++ H  G+  + +    +   V++   D TI++WD   GA   + EGHE  V  +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 575
              +K     I S A DGKIK W   +L + +D  AP            GT   +   + 
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 576 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 603
           S  V +    + + +++  D +I  WD 
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 635 VSTNDNGIKILATSDGIR 652
               DN +++   + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 540
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 596
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 597 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 634
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 635 VSTNDNGIKILATSDGIR 652
               DN +++   + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V  + F HP   + +++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 580
            + + + S + D  IK W +                       +  RT  G    ++  V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 640
                 +  ++A  D +IK W++ +   + +    G       +R N+DG L+A  +ND 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 641 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 676
            ++  ++AT +    LR   ++    S   E+S  +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 482
           V  V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 539
           ++   D+TIK+W+     K  I EG E    +  C     N     I S + D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 586
             N   R        + +T+A S DG+    G +   + +      K             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 587 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 615
                NR+ L A  +  IK WD++S  ++  +  D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
           ++ R  N  SS  ++ F+  Q  +L  G N G+I                 +WD+  C+ 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 410 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
                    PG    SV+ VI   W+     +F  A S +   I+      EV  HL   
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 463 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 514
           +   G+     +   HP     V T     +D +I +WD  N     Q + +GH+  + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 556
           +   H++    + S+  D  +  W  ++      + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 516
           H  +  H   V+D+A S  N     I+   DKT+++WD   G     F GH++ VYSV  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 517 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 562
            P +++    I S   + +IK W  L +   S  + E    W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 542  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 600
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 601  WDMDSVQLLTS 611
            W++   QLL S
Sbjct: 1154 WNVSDGQLLHS 1164

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 422  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 482  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 542  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 600
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 601  WDMDSVQLLTS 611
            W++   QLL S
Sbjct: 1161 WNVSDGQLLHS 1171

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 519
           +AH   ++D    +  K+L   TC  DKTIK+++      + I    GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
            +    + S + DGK+  W  +N          GRW
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN----------GRW 89

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 492
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 493 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 507 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 564
           GH APV  +  CPH   N   I S + D  +  W   + G  +    P            
Sbjct: 79  GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
              T +G  KR   V    T +N  L+AG D  I  WD+ +   + ++  D        +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 625 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 674
            +++DG L+  S  D  ++++    G         +  +  R  E ++P 
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1113
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.8
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.7
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.66
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.62
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.59
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.55
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.54
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.53
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.52
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.52
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.51
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.51
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.51
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.5
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.5
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.48
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.48
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.47
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.45
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.35
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.34
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.33
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.33
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.32
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.27
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.26
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.26
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.24
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.21
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.2
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.2
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.18
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.17
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.15
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.12
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.12
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.12
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.09
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.08
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.07
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.07
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.06
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.03
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.01
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.8
3ott_A	758	Two-component system sensor histidine kinase; beta	98.72
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.71
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.7
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.7
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.68
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.64
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.54
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.53
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.52
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.52
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.49
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.47
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.43
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.37
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.36
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.35
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.32
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.32
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.3
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.24
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.21
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.21
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.17
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.14
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.14
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.12
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.08
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.07
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.06
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.06
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.97
3ott_A	758	Two-component system sensor histidine kinase; beta	97.95
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.91
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.82
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.82
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.75
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.74
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.69
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.61
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.5
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.46
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.45
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.33
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.29
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.2
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.18
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	97.17
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.1
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.04
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.97
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.9
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.9
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.89
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.72
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.69
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.46
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.4
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.37
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.29
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.25
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.2
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.19
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.04
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.99
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	95.83
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.72
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.69
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.66
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.59
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.2
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.14
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.12
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	94.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	94.49
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.36
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.28
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.23
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	94.13
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	94.09
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	94.02
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.91
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	93.89
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.5
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	93.3
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.23
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.28
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	86.7
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.56
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	82.46
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	82.34

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=8.6e-67  Score=632.61  Aligned_cols=566  Identities=24%  Similarity=0.371  Sum_probs=472.2

Q ss_pred             eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      .++.+|++.|+|++|||||++ ||+|+.|++|+|||. +++.+.                   .+.+|.+.|++++||||
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd   68 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD   68 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence            355679999999999999995 999999999999995 566654                   47899999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      |++||+++.|++|+|||+. ++.+.   ++.+|...|.+++|+|+++  ++++++.|+.+++|+.. ........+|...
T Consensus        69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  141 (577)
T 2ymu_A           69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS  141 (577)
T ss_dssp             SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence            9999999999999999964 45444   6889999999999999999  79999999999999954 4556677889999


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      |.++.+++  ++..+++++.++.+++|+... ........+...+..+.++|++                     .++++
T Consensus       142 v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~---------------------~~l~~  197 (577)
T 2ymu_A          142 VWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDG---------------------QTIAS  197 (577)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTS---------------------SCEEE
T ss_pred             eeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCC---------------------CEEEE
Confidence            99998765  457899999999999998653 3333444455555555555554                     47999


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      ++.|+.|++||. +++.+..+..+  ...|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.      
T Consensus       198 ~~~d~~v~~w~~-~~~~~~~~~~~--~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------  266 (577)
T 2ymu_A          198 ASDDKTVKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------  266 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred             EcCCCEEEEEeC-CCcEEEEEecC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence            999999999996 56777777766  4479999999999999999999999999964 3 45555655544322      


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                         ...+.+++..+++++.|+.+++|+...    .....+    .+|.
T Consensus       267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~  303 (577)
T 2ymu_A          267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS  303 (577)
T ss_dssp             -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred             -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence                                               123456788999999999999999653    112221    3488


Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      ..|.+++|+|+++.+++++.|+.+++|+.....                      +..  +.  +|...+.+++|+|+++
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~  357 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQ  357 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCC
Confidence            999999999999999999999999999864211                      111  12  2788999999999999


Q ss_pred             EEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE
Q 001258          832 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  910 (1113)
Q Consensus       832 ~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  910 (1113)
                      +|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus       358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            999998 899999996 5678888999999999999999 8999999999999999995 57788999999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeecc
Q 001258          911 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQW  989 (1113)
Q Consensus       911 s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~  989 (1113)
                      +||+++|++++.|++|++||....      ......+|.   ..|.+++|+||+++|++ +.|+.|++||. +++++..+
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~  504 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  504 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence            999999999999999999997542      223333444   37899999999999999 58999999995 67777777


Q ss_pred             ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258          990 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus       990 ~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
                      .  +|...|++++|+|||++|++++.||.|++||+ +++.+..+.       +|.+.|+.  ++|+| ||++|++++.||
T Consensus       505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~v~~--~~fs~-dg~~l~s~~~D~  571 (577)
T 2ymu_A          505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSSVWG--VAFSP-DGQTIASASSDK  571 (577)
T ss_dssp             E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSCEEE--EEECT-TSSCEEEEETTS
T ss_pred             e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCCEEE--EEEcC-CCCEEEEEeCCC
Confidence            6  88999999999999999999999999999996 577777776       89999985  88999 789999999999


Q ss_pred             cEEEEe
Q 001258         1070 GVHVFE 1075 (1113)
Q Consensus      1070 ~v~vW~ 1075 (1113)
                      +|++||
T Consensus       572 ~i~~Wd  577 (577)
T 2ymu_A          572 TVKLWN  577 (577)
T ss_dssp             CEEEEC
T ss_pred             EEEEeC
Confidence            999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.5e-65  Score=619.74  Aligned_cols=576  Identities=14%  Similarity=0.129  Sum_probs=452.3

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +.+.+.+++|||||++ |++++ ++.|+|||+.+++...                   .+.+|.+.|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence            5788999999999995 88877 5799999998877655                   4789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC----CcEEEEeCCCCceeeEeeccCcCE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      +|+.|++|+|||+.+++.. ...++.+|.+.|.+++|+|+++  .|++++.+    ++|++||  .++.+..+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            9999999999999765543 2236789999999999999999  67777654    3677776  577788899999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .+++|++... ..|++|+.|++|++||..+.+....+..|...|.+++|+|+|+                     +|+++
T Consensus       151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~---------------------~las~  208 (611)
T 1nr0_A          151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFAST  208 (611)
T ss_dssp             EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred             eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC---------------------EEEEE
Confidence            9999876532 3699999999999999887666667777777777777777765                     79999


Q ss_pred             ecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                      +.|++|++||+.+++.+..+...     +|...|.+++|+|++++|++++.|++|++||+.++ +....+..+....   
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~---  284 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE---  284 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence            99999999999999988877421     34568999999999999999999999999999887 4444443211000   


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                                                           ........++..+++++.|+.+++|+.....   ....    .
T Consensus       285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~----~  320 (611)
T 1nr0_A          285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQV----R  320 (611)
T ss_dssp             -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEE----E
T ss_pred             -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceE----E
Confidence                                                 0000111256789999999999999976532   1111    1


Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                      .+|...|.+++|+|+|+.|++++.|+.|++||+...                      .......  ..|...|.+++|+
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------------------~~~~~~~--~~h~~~v~~~~~s  376 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------------------ISNRVFP--DVHATMITGIKTT  376 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------------CEEECSS--CSCSSCEEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----------------------ceeeecc--cCCcceEEEEEEC
Confidence            358899999999999999999999999999987632                      2211111  2388899999999


Q ss_pred             cCCCEEEEEe-CCeEEEEECCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258          828 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      +++. +++++ |+++++|++.++.....   .........+++|+| ++.+++++ .++.+++|+  .++ +..+. |..
T Consensus       377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~  449 (611)
T 1nr0_A          377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY  449 (611)
T ss_dssp             TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred             CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence            8775 55555 99999999886543221   011233567899999 78777766 567899998  344 45554 888


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCc
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  982 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~  982 (1113)
                      .+++++|+|||++|++++.|++|++||+.++....   ... .+|.   ..|.+++|+|||++|++ +.|+.|++|++.+
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            99999999999999999999999999998753211   111 2333   47999999999999999 5899999999988


Q ss_pred             -cceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce-e-eecCCCcccCCCc-ccCccceEEEEeCCC
Q 001258          983 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGV-SSNVHPLVIAAHPQE 1058 (1113)
Q Consensus       983 -~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~-~-~~~~~~~~~~~gh-~~~v~~i~~~~~p~d 1058 (1113)
                       +++.......+|...|.+++|+|||++|++|+.|++|++||+.++.. . ..+.       +| .+.|..  ++|+| |
T Consensus       523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~-------~h~~~~v~~--v~fs~-d  592 (611)
T 1nr0_A          523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG-------AHAMSSVNS--VIWLN-E  592 (611)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT-------SSTTSCEEE--EEEEE-T
T ss_pred             CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhc-------cCcccCeeE--EEEcC-C
Confidence             66655423335999999999999999999999999999999988653 2 2333       78 777885  88888 6


Q ss_pred             CCEEEEEeCCCcEEEEecc
Q 001258         1059 PNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1059 ~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      +. |++++.|++|++|+++
T Consensus       593 ~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          593 TT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TE-EEEEETTSCEEEEECC
T ss_pred             CE-EEEecCCCCEEEEecc
Confidence            66 9999999999999973

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.2e-61  Score=580.64  Aligned_cols=540  Identities=15%  Similarity=0.192  Sum_probs=427.0

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|++++|||||++ ||+|+.||+|+|||+.+++.....                 .+.+|.+.|.+++|+|||
T Consensus        54 ~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~-----------------~~~~~~~~v~~v~fs~dg  115 (611)
T 1nr0_A           54 IYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT-----------------TIPVFSGPVKDISWDSES  115 (611)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE-----------------EEECSSSCEEEEEECTTS
T ss_pred             EecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE-----------------eecccCCceEEEEECCCC
Confidence            34469999999999999995 999999999999999765543211                 367899999999999999


Q ss_pred             CeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       433 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                      ++||+++.+    +.|++||  +++...   ++.+|...|++++|+|++.. .|++|+.|++|++||..+++++.++.+|
T Consensus       116 ~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H  189 (611)
T 1nr0_A          116 KRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEH  189 (611)
T ss_dssp             CEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEETTTBEEEEEECCC
T ss_pred             CEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEECCCCeEeeeeccc
Confidence            999998865    4677777  454444   68899999999999999874 5999999999999999999999999999


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-------CCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-------APGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      ...|.+++|++  ++.+|++++.|++|++||+.+++....+.       .|...|.+++|+|+                 
T Consensus       190 ~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spd-----------------  250 (611)
T 1nr0_A          190 TKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD-----------------  250 (611)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT-----------------
T ss_pred             cCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCC-----------------
Confidence            99999999875  56899999999999999998877665552       34555555555555                 


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                          +.+|++++.|++|++||+.+++++..+..+.. ...+..+.|  +++.+++++.|+.+++|+..++ .....+.+|
T Consensus       251 ----g~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~-~~~~~~~gh  323 (611)
T 1nr0_A          251 ----GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELG-SIDQVRYGH  323 (611)
T ss_dssp             ----SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTT-EEEEEECCC
T ss_pred             ----CCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCC-CcceEEcCC
Confidence                45799999999999999999998888764321 112334555  7889999999999999999877 466666676


Q ss_pred             cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258          661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  740 (1113)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  740 (1113)
                      ...+..                                         ..+.+++..+++++.|++|++||+......   
T Consensus       324 ~~~v~~-----------------------------------------l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~---  359 (611)
T 1nr0_A          324 NKAITA-----------------------------------------LSSSADGKTLFSADAEGHINSWDISTGISN---  359 (611)
T ss_dssp             SSCEEE-----------------------------------------EEECTTSSEEEEEETTSCEEEEETTTCCEE---
T ss_pred             CCCEEE-----------------------------------------EEEeCCCCEEEEEeCCCcEEEEECCCCcee---
Confidence            654332                                         234567899999999999999999864321   


Q ss_pred             eecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258          741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  820 (1113)
Q Consensus       741 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~  820 (1113)
                       .  .....|...|.+++|++++ .+++++.|+.+++|+..........                 ....     .....
T Consensus       360 -~--~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-----------------~~~~-----~~~~~  413 (611)
T 1nr0_A          360 -R--VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-----------------AVAN-----KLSSQ  413 (611)
T ss_dssp             -E--CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------CCEE-----ECSSC
T ss_pred             -e--ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------eeee-----ecCCC
Confidence             1  1113488899999999876 5889999999999987643211000                 0000     02344


Q ss_pred             ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee--eeee
Q 001258          821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV--KSKL  898 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~--~~~l  898 (1113)
                      +.+++++|+|+.++++.++.+++|+  .++ +..+. |...+.+++|+| ++++||+|+.|+.|++||+.+++.  +.. 
T Consensus       414 ~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-  487 (611)
T 1nr0_A          414 PLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-  487 (611)
T ss_dssp             EEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-
T ss_pred             CcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-
Confidence            6789999999999888899999998  333 45554 777899999999 899999999999999999987653  234 


Q ss_pred             cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEE
Q 001258          899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLA  976 (1113)
Q Consensus       899 ~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~  976 (1113)
                      .+|...|++++|+|||++|++++.|++|++|++.+ ++....   ....+|.   ..|.+++|+|||++|++ +.|+.|+
T Consensus       488 ~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~---~~V~~v~fspdg~~lasgs~D~~v~  561 (611)
T 1nr0_A          488 IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT---AKVACVSWSPDNVRLATGSLDNSVI  561 (611)
T ss_dssp             EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS---SCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc---cceeEEEECCCCCEEEEEECCCcEE
Confidence            68999999999999999999999999999999987 332110   0122243   47999999999999999 5899999


Q ss_pred             EEeCCccceeeccccCCC-CCCeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258          977 IFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      +||+.++.........+| ...|.+++|+||++ |++++.|++|++|+++
T Consensus       562 lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          562 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             EEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            999998763321122378 89999999999999 9999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.6e-60  Score=575.76  Aligned_cols=524  Identities=23%  Similarity=0.364  Sum_probs=438.7

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|++++|||||++ ||+|+.|++|+|||. +++.+.                   .+.+|.+.|.+++|+||+
T Consensus        52 ~l~gh~~~V~~l~fspdg~~-las~~~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~  110 (577)
T 2ymu_A           52 TLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDG  110 (577)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEeCCCCCEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCC
Confidence            33459999999999999995 999999999999996 455554                   478899999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ++|++++.|+.+++|+.......    ...+|...|.++.|+|++.  .+++++.++.+++|+. ..........|...|
T Consensus       111 ~~l~~~~~d~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v  183 (577)
T 2ymu_A          111 QTIASASDDKTVKLWNRNGQLLQ----TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSV  183 (577)
T ss_dssp             SEEEEEETTSCEEEEETTCCEEE----EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCE
T ss_pred             CEEEEEcCCCceeecccccceee----eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcce
Confidence            99999999999999998765432    4678999999999999999  6899999999999994 555667778899999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .++++++  ++.++++++.||.|++||.. .+....+..+...|.+++|+|+++                     +|+++
T Consensus       184 ~~~~~~~--~~~~l~~~~~d~~v~~w~~~-~~~~~~~~~~~~~v~~~~~s~dg~---------------------~l~~~  239 (577)
T 2ymu_A          184 WGVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQ---------------------TIASA  239 (577)
T ss_dssp             EEEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSS---------------------CEEEE
T ss_pred             eeeeecC--CCCEEEEEcCCCEEEEEeCC-CcEEEEEecCCCCEEEEEECCCCC---------------------EEEEE
Confidence            9999764  55799999999999999964 455556666777777777666665                     69999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      +.|+.|++||. +++.+..+..+  ...|.+++|+|+++.+++++.|+.|++|+...  +....+.+|...+..      
T Consensus       240 ~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~------  308 (577)
T 2ymu_A          240 SDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWG------  308 (577)
T ss_dssp             ETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEE------
T ss_pred             eCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEE------
Confidence            99999999996 56777777765  45799999999999999999999999999643  455566665543321      


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                         ..+.+++..+++++.|+.+++|+....    ....+    ..|..
T Consensus       309 -----------------------------------~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~  345 (577)
T 2ymu_A          309 -----------------------------------VAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSS  345 (577)
T ss_dssp             -----------------------------------EEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSS
T ss_pred             -----------------------------------EEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCC
Confidence                                               234567889999999999999997642    22222    34788


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .+.+++|+|+++.+++++.|+.+++|+...                       ..+.. +.  .|...|.+++|+|++++
T Consensus       346 ~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~--~~~~~v~~~~~s~dg~~  399 (577)
T 2ymu_A          346 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LT--GHSSSVRGVAFSPDGQT  399 (577)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EE--CCSSCEEEEEECTTSSC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ec--CCCCCeEEEEECCCCCE
Confidence            999999999999999999999999998531                       11111 12  27889999999999999


Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  911 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  911 (1113)
                      |++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus       400 l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s  476 (577)
T 2ymu_A          400 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS  476 (577)
T ss_dssp             EEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred             EEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEc
Confidence            99998 899999996 5678888999999999999999 8999999999999999996 567888999999999999999


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccc
Q 001258          912 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV  990 (1113)
Q Consensus       912 ~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~  990 (1113)
                      ||+++|++++.|++|++||... +     ......+|.   ..|.+++|+|||++|++ +.|+.|++||. +++++..+.
T Consensus       477 pd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~  546 (577)
T 2ymu_A          477 PDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT  546 (577)
T ss_dssp             TTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE
T ss_pred             CCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc
Confidence            9999999999999999999643 2     233444554   47999999999999999 58999999996 677777776


Q ss_pred             cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          991 PRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       991 ~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                        +|...|++++|+|||++|++++.|++|++||
T Consensus       547 --~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          547 --GHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             --CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence              8999999999999999999999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7e-61  Score=634.42  Aligned_cols=596  Identities=15%  Similarity=0.171  Sum_probs=492.5

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|++++|||+|++ +++|+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|+|||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~  669 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD  669 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence            34469999999999999995 9999999999999999998776                   367999999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ++||+|+.|++|+|||+.+++.+.   ++.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v  746 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV  746 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence            999999999999999999998766   78899999999999997655589999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC-------------CCceEEEEEccCCCeEEec--------
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-------------GRWCTTMAYSADGTRTYQG--------  571 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~v~~~~~s~~~~~~~~~--------  571 (1113)
                      .+++|++  ++.++++++.||.|++||+.+......+...             ...+.+++|+|+|..++.+        
T Consensus       747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~  824 (1249)
T 3sfz_A          747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF  824 (1249)
T ss_dssp             EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEE
T ss_pred             EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEE
Confidence            9999876  4579999999999999999887665544321             2367788999998855443        


Q ss_pred             -------------cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258          572 -------------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       572 -------------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                                   .+...+..++|+|++.++++++.+|.|++||+.++..+..+..|  ...|.+++|+|+++++++++.
T Consensus       825 d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~s~s~  902 (1249)
T 3sfz_A          825 DIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFSPDGSSFLTASD  902 (1249)
T ss_dssp             ETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEET
T ss_pred             EecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEECCCCCEEEEEeC
Confidence                         34457788999999999999999999999999999999888766  457999999999999999999


Q ss_pred             CCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCccee
Q 001258          639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  718 (1113)
Q Consensus       639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  718 (1113)
                      ||.|++|++.+.............                                            .....+....++
T Consensus       903 dg~v~vw~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~  938 (1249)
T 3sfz_A          903 DQTIRVWETKKVCKNSAIVLKQEI--------------------------------------------DVVFQENETMVL  938 (1249)
T ss_dssp             TSCEEEEEHHHHHSCCSSSEEEEE--------------------------------------------EEEEETTEEEEE
T ss_pred             CCeEEEEEccccceeeeeccccee--------------------------------------------eEEEcCCCcEEE
Confidence            999999998654111100000000                                            001112233444


Q ss_pred             eccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCe
Q 001258          719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  798 (1113)
Q Consensus       719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  798 (1113)
                      .....+.+.+|......    ..      ......+.+++++|+++.+++++.+|.+++|++...               
T Consensus       939 ~~~~~~~~~~~~~~~~~----~~------~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~---------------  993 (1249)
T 3sfz_A          939 AVDNIRGLQLIAGKTGQ----ID------YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN---------------  993 (1249)
T ss_dssp             EEESSSSEEEEEESSCC----EE------EECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT---------------
T ss_pred             EecCCcceEEEecCcce----EE------EcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC---------------
Confidence            55555666666654321    11      114567999999999999999999999999987632               


Q ss_pred             ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001258          799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  877 (1113)
Q Consensus       799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~  877 (1113)
                             ..... +.  +|...|.+++|+|++++|++++ ||.|++||+.+++... +..|...+.+++|+| ++ .+++
T Consensus       994 -------~~~~~-~~--~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~ 1060 (1249)
T 3sfz_A          994 -------RVFSS-GV--GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLS 1060 (1249)
T ss_dssp             -------SCEEE-CC--CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEE
T ss_pred             -------ceeee-cc--cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEE
Confidence                   21111 12  3889999999999999999998 8999999999987764 557889999999999 65 5678


Q ss_pred             EecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCce
Q 001258          878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  957 (1113)
Q Consensus       878 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~  957 (1113)
                      ++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|++++.|++|++||+.+++.     .....+|.   ..|.+
T Consensus      1061 ~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~ 1132 (1249)
T 3sfz_A         1061 WSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRC 1132 (1249)
T ss_dssp             EESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEE
T ss_pred             EECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEE
Confidence            99999999999999999999999999999999999999999999999999999988653     33444554   47999


Q ss_pred             EEEccCCcEEEE-EcCCeEEEEeCCccceeeccc-------cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          958 VQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       958 ~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                      ++|+|||++|++ +.|+.|++||+.+++.+..+.       ..+|...|++++|+|||++|++++  |.|++||+.+++.
T Consensus      1133 ~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             EEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBC
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCce
Confidence            999999999999 588999999999999877651       136889999999999999999885  8999999999998


Q ss_pred             eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      +..+.       +|...|..  ++|+| ||.+|++++.||.|++|++.
T Consensus      1211 ~~~~~-------~~~~~i~~--~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1211 SQTFY-------TNGTNLKK--IHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             CCCCC-------CSSCCCCC--CEECS-SSCCEEEECTTCCEEEECCC
T ss_pred             eeeee-------ccCCcccE--EEECC-CCCEEEEecCCcEEEEEeec
Confidence            87765       67777876  78888 78999999999999999975

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.2e-58  Score=563.94  Aligned_cols=562  Identities=12%  Similarity=0.151  Sum_probs=459.7

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc----ceeEeeeeeeeccCCCCcccccccccCCCcc-eEEEEEcC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP  430 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp  430 (1113)
                      .|.+.|++++|||||++ |++|+ ++.|+|||+.++    +...                   .+.+|.+. |++++|+|
T Consensus        16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence            48899999999999995 77777 889999999987    5554                   47899999 99999999


Q ss_pred             --CCCeEEEEeCCCeEEEEEccCCc-----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC----CcEEEEeCCCC
Q 001258          431 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG  499 (1113)
Q Consensus       431 --dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d----~~i~iwd~~~~  499 (1113)
                        ++++||+|+.||.|+|||+.++.     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  .+
T Consensus        75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~  150 (615)
T 1pgu_A           75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG  150 (615)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred             CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence              99999999999999999998651     1223346788999999999999999  78888877    6888887  67


Q ss_pred             ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCC---ceEEEEEccC-CCeEEeccccC
Q 001258          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSAD-GTRTYQGFRKR  575 (1113)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~~~~~~~~~  575 (1113)
                      +.+..+.+|...|.+++|++... .++++++.|+.|++||+.+.+....+..+..   .|.+++|+|+ ++         
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------  220 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGE---------  220 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCC---------
T ss_pred             CcceeeecCCccEEEEEECCCCC-cEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCC---------
Confidence            88899999999999999876542 3899999999999999988777777766666   6666666665 54         


Q ss_pred             ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC--CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD--GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                                  ++++++.|+.|++||+.+++.+..+...  .+...|.+++|+ ++++|++++.|+.|++||+.++ +.
T Consensus       221 ------------~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~  286 (615)
T 1pgu_A          221 ------------FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS-KC  286 (615)
T ss_dssp             ------------EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT-EE
T ss_pred             ------------EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC-cE
Confidence                        7999999999999999999998888211  234579999999 9999999999999999999887 55


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ...+..+......                                      .......+++..+++++.++.+++|++..
T Consensus       287 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d~~~  328 (615)
T 1pgu_A          287 VQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYELGH  328 (615)
T ss_dssp             EEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEETTE
T ss_pred             EEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEECCC
Confidence            5555443211000                                      00011123678899999999999999875


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                      ...   ...  +  .+|...|.+++| |+   +++++.||.+++|++.                         .    +.
T Consensus       329 ~~~---~~~--~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~----~~  368 (615)
T 1pgu_A          329 DEV---LKT--I--SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S----MH  368 (615)
T ss_dssp             EEE---EEE--E--CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E----EE
T ss_pred             CcE---EEE--E--eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h----hc
Confidence            221   111  1  348899999999 88   9999999999998754                         0    11


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                       ..|...|.+++| +++..+++++ |+.|++||+.+++...       .+.+++|+| ++.+++++ .++.+.+|++.++
T Consensus       369 -~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~  437 (615)
T 1pgu_A          369 -QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQSFTG  437 (615)
T ss_dssp             -CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTC
T ss_pred             -CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEeccCC
Confidence             238899999999 6677777777 9999999998765433       688999999 88888877 8899999999999


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-E
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V  970 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~  970 (1113)
                      +.+..+. |...+++++|+  +++|++++. |+.|++||+.+++...    ....++.   ..|.+++|+|+|++|++ +
T Consensus       438 ~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~~~~  507 (615)
T 1pgu_A          438 DIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIAAGD  507 (615)
T ss_dssp             CEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEEEEE
T ss_pred             ceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEEEcC
Confidence            9888886 88999999999  889999999 9999999998854321    2333333   47999999999999999 4


Q ss_pred             cCCeEEEEeCCccceeeccccCC-CCCCeeEEEECC----------CCCEEEEEeCCCcEEEEecCCC-ceeeecCCCcc
Q 001258          971 HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINPSAY 1038 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~----------dg~~l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~ 1038 (1113)
                      .|+.|++||+.+++.+..+.  + |...|++++|+|          ++++|++++.||.|++||+.++ +.+..+.    
T Consensus       508 ~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~----  581 (615)
T 1pgu_A          508 VMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN----  581 (615)
T ss_dssp             TTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT----
T ss_pred             CCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh----
Confidence            89999999999999988765  4 899999999999          9999999999999999999998 6776666    


Q ss_pred             cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                         +|.+.|..  ++|+| ++. |++++.||+|++|++.+
T Consensus       582 ---~h~~~v~~--l~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 ---AHKDGVNN--LLWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ---SSTTCEEE--EEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             ---cCccceEE--EEEcC-CCC-eEEecCCceEEEEeeec
Confidence               88888885  88888 677 99999999999999976

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-57  Score=567.05  Aligned_cols=638  Identities=11%  Similarity=0.095  Sum_probs=438.7

Q ss_pred             eEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       352 ~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      ....+|.+.|++++|+|+|+ +||+|+.||+|+||+..+++...                    ...|...|.+++|+| 
T Consensus        11 ~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp-   68 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK-   68 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET-
T ss_pred             ccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC-
Confidence            44568999999999999999 59999999999999988766543                    234788999999999 


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee---------
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------  502 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---------  502 (1113)
                      |++|++++.|++|+|||+.+++.+.   ++. |.+.|++++|+|+++  ++++|+.||+|++||+.++++.         
T Consensus        69 g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~  142 (902)
T 2oaj_A           69 GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQK  142 (902)
T ss_dssp             TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHH
T ss_pred             CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccc
Confidence            8899999999999999999988765   443 778999999999999  7999999999999999988764         


Q ss_pred             --eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC--eEEeccccCcee
Q 001258          503 --YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSLG  578 (1113)
Q Consensus       503 --~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i~  578 (1113)
                        ..+.+|.+.|.+++|+|. ++..+++|+.||.| +||+++......+..+...-     .+.+.  .....++...+.
T Consensus       143 ~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V~  215 (902)
T 2oaj_A          143 SSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKVI  215 (902)
T ss_dssp             HHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCEE
T ss_pred             cccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCeE
Confidence              234679999999999874 23689999999999 99999876665554431000     00000  000112234577


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-----C-----------CCCCCcCeEEEC----CCC-CEEEEEE
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-----D-----------GGLPASPRIRFN----KDG-CLLAVST  637 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~-----------~~~~~v~~~~~s----~~~-~~l~~~~  637 (1113)
                      .++|+|++.+|++++.||.|++||+.+++++.....     +           .+...|.+++|+    |++ .++++|+
T Consensus       216 ~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~  295 (902)
T 2oaj_A          216 QSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK  295 (902)
T ss_dssp             EEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence            778888888999999999999999999988764221     2           123368999995    543 5677776


Q ss_pred             CC-----CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCC---CCCCcc
Q 001258          638 ND-----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG---MNGDVR  709 (1113)
Q Consensus       638 ~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  709 (1113)
                      .+     +.+.+|++..... + .. +......        .+  ..   ...............+.....   ..+...
T Consensus       296 ~~~~~~~~~v~~~~~~~~~~-~-~~-~s~~~~~--------~~--~~---~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~  359 (902)
T 2oaj_A          296 SISRGDNQSLTMIDLGYTPR-Y-SI-TSYEGMK--------NY--YA---NPKQMKIFPLPTNVPIVNILPIPRQSPYFA  359 (902)
T ss_dssp             CSTTSSCCCEEEEEEEECCC-G-GG-CCHHHHH--------HH--HH---SCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred             CCCCCCCceEEEEecCCCCC-c-cc-cchhhhh--------hh--hc---CccceEEEecCCCCceEEEEECCCCCCCcC
Confidence            65     3788888531100 0 00 0000000        00  00   000000000000000000000   000001


Q ss_pred             ccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCC
Q 001258          710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  789 (1113)
Q Consensus       710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  789 (1113)
                      ...+...+++++.|+.+++|++..................|...|++++|++...           .+|+......    
T Consensus       360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~~----  424 (902)
T 2oaj_A          360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSAA----  424 (902)
T ss_dssp             HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHTT----
T ss_pred             CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhcc----
Confidence            1123446788888999999998643211110000011123557888888865332           2233210000    


Q ss_pred             ceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eee---------cC
Q 001258          790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MP  857 (1113)
Q Consensus       790 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~---------~~  857 (1113)
                                     +.. ...+.+  |...+.+++|+|++++|++|+ |++|++||+.++...  ..+         .+
T Consensus       425 ---------------~~~-~~~l~G--~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~  486 (902)
T 2oaj_A          425 ---------------QNK-DYLLKG--GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKA  486 (902)
T ss_dssp             ---------------BCC-CCSCCC--SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCS
T ss_pred             ---------------cCC-CCcccC--CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCC
Confidence                           000 011223  777888899999999999999 999999999887432  111         17


Q ss_pred             CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---------------------------------------------
Q 001258          858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------------------------------------------  892 (1113)
Q Consensus       858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---------------------------------------------  892 (1113)
                      |...|.+++|+| ++++||+|+.||+|+|||+.++                                             
T Consensus       487 h~~~V~svafsp-dg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          487 KELAVDKISFAA-ETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSCCEEEEEEET-TTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCceeEEEecC-CCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            888999999999 9999999999999999999876                                             


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCC-CCCCCCCCCceEEEc-----cCC--
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ--  964 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~s-----pdg--  964 (1113)
                      +++..+.+|.+.|++|+||||| +||+|+.|++|++||+++............. +|.   ..|++++|+     |||  
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~  641 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYS  641 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSE
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCc
Confidence            2467888999999999999999 9999999999999999875432211112232 554   479999999     886  


Q ss_pred             -cEEEE-EcCCeEEEEeC---CccceeeccccC---CCCCCeeEEE-EC----------------------CCCCEEEEE
Q 001258          965 -IHFLV-VHETQLAIFET---TKLECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYAC 1013 (1113)
Q Consensus       965 -~~l~~-~~d~~v~v~d~---~~~~~~~~~~~~---~h~~~v~~l~-~s----------------------~dg~~l~s~ 1013 (1113)
                       ++|++ +.|++|++||+   .+|++...+...   .|.++|.+++ |+                      +++.+|+++
T Consensus       642 ~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~  721 (902)
T 2oaj_A          642 SILMVCGTDMGEVITYKILPASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG  721 (902)
T ss_dssp             EEEEEEEETTSEEEEEEEEECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC
T ss_pred             ceEEEEEecCCcEEEEEEecCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe
Confidence             78888 58999999999   888887776531   1357888877 65                      455555544


Q ss_pred             eCCCcEEEEecCCCceeeecCCCcccCCCcccCccceE-EE------EeCCCCCEEEEEeCCCcEEEEeccCCC--cccc
Q 001258         1014 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLV-IA------AHPQEPNEFALGLSDGGVHVFEPLESE--GKWG 1084 (1113)
Q Consensus      1014 ~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~-~~------~~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~ 1084 (1113)
                        +..|+||++.+++..++..       +|...+..+. +.      |++ ++..|++++.||+|++|++++.+  ..+.
T Consensus       722 --~~~ir~~~~~~~k~~~k~~-------~~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~  791 (902)
T 2oaj_A          722 --FDDIRLITLGKSKSTHKGF-------KYPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEH  791 (902)
T ss_dssp             --SSEEEEECTTCCCEEEEEC-------SSCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --ccceEEEeCccccceeeEc-------ccceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhcc
Confidence              8899999999999887764       5554445431 23      555 67899999999999999999999  4445


Q ss_pred             CCCC
Q 001258         1085 VPPP 1088 (1113)
Q Consensus      1085 ~~~~ 1088 (1113)
                      .++.
T Consensus       792 ~~~~  795 (902)
T 2oaj_A          792 IPFP  795 (902)
T ss_dssp             CSSC
T ss_pred             CCcc
Confidence            4444

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.3e-56  Score=593.70  Aligned_cols=568  Identities=17%  Similarity=0.217  Sum_probs=467.3

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+.   ++.+|.+.|.+++|+|+++  ++++++.|++|+||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence            578999999999999999999999999999999999998766   6889999999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |+.+++++..+.+|...|.+++|++..++.++++|+.||.|++||+.++.....+..|...|.+++|+|+++        
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~--------  756 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE--------  756 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT--------
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC--------
Confidence            999999999999999999999999877778999999999999999999888878887877777777777665        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC-----------CCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK  643 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~  643 (1113)
                                   ++++++.||.|++||+.+++....+....           ....+.+++|+|+|+.+++++ ++.+.
T Consensus       757 -------------~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~  822 (1249)
T 3sfz_A          757 -------------LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL  822 (1249)
T ss_dssp             -------------EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred             -------------EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence                         79999999999999999988777664321           123688999999999999988 58999


Q ss_pred             EEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCC
Q 001258          644 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  723 (1113)
Q Consensus       644 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  723 (1113)
                      +|+..++........+|...+.                                         ...+.+++..+++++.+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v~-----------------------------------------~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTIQ-----------------------------------------YCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCCC-----------------------------------------EEEECSSTTEEEEECSS
T ss_pred             EEEecCCCceeEEcCCCCCceE-----------------------------------------EEEEcCCCCEEEEEeCC
Confidence            9999988433333334333221                                         23345678899999999


Q ss_pred             CceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee-----------
Q 001258          724 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT-----------  792 (1113)
Q Consensus       724 ~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-----------  792 (1113)
                      +.+++|++......   .  .+  .+|...|.+++|+|+++.+++++.|+.+++|++............           
T Consensus       862 g~v~vwd~~~~~~~---~--~~--~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          862 YCVELWNIDSRLKV---A--DC--RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             SCEEEEETTTTEEE---E--EE--CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             CeEEEEEcCCCcee---e--ec--CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            99999999863221   1  11  348899999999999999999999999999998643211110000           


Q ss_pred             ---e----eecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE
Q 001258          793 ---A----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF  864 (1113)
Q Consensus       793 ---~----~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~  864 (1113)
                         .    ...+.++...++.....      +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred             cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence               0    00122333333333221      456799999999999999999 899999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccccc
Q 001258          865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  944 (1113)
Q Consensus       865 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~  944 (1113)
                      ++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++..     ..
T Consensus      1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A         1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp             EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred             EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence            99999 8999999999999999999998876 456899999999999975 6788999999999999986543     22


Q ss_pred             CCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEe
Q 001258          945 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       945 ~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd 1023 (1113)
                      ..+|.   ..|.+++|+|||++++++ .|+.|++||+.+++.+..+.  +|...|++++|+|||++|++|+.||.|++||
T Consensus      1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            33343   378999999999999994 89999999999999888776  7899999999999999999999999999999


Q ss_pred             cCCCceeeecCCCcc--cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258         1024 AANLKLRCRINPSAY--LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus      1024 ~~~~~~~~~~~~~~~--~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
                      +.+++.+..+.+...  ...+|.+.|..  ++|+| ||.+|++++  |+|++||+.+++.
T Consensus      1156 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~--l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1156 VSDGQLLHSCAPISVEEGTATHGGWVTD--VCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             SSSSCCCCCCCCCC-------CCSCCCE--EEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             CCCCceEEEeccccccccccccCceEEE--EEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            999988876532111  11367788885  88999 788998885  9999999999883

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.7e-54  Score=526.50  Aligned_cols=523  Identities=13%  Similarity=0.161  Sum_probs=437.3

Q ss_pred             ceeEeccCCCC-cEEEEEcC--CCCeEEEEEecCCcEEEEecCCc------ceeEeeeeeeeccCCCCcccccccccCCC
Q 001258          350 TVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR------ERLVLRNFKVWDLGACSMPLQAALVKDPG  420 (1113)
Q Consensus       350 ~~~~~~~h~~~-V~~~~~sp--dg~~ll~~gs~dg~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  420 (1113)
                      ......+|.+. |++++|+|  +|++ |++|+.||.|+|||+.++      +....                 ..+.+|.
T Consensus        55 ~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~-----------------~~~~~~~  116 (615)
T 1pgu_A           55 PVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKESNSVEVNVK-----------------SEFQVLA  116 (615)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGGGTEEEEEEE-----------------EEEECCS
T ss_pred             cceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCccccccccccc-----------------chhhccc
Confidence            34455569999 99999999  9995 999999999999999765      11111                 1366799


Q ss_pred             cceEEEEEcCCCCeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001258          421 VSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  496 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  496 (1113)
                      ..|.+++|+|++++|++++.+    +.|.+||  .++.+.   .+.+|...|.+++|+|+++. ++++++.|+.|++||+
T Consensus       117 ~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~  190 (615)
T 1pgu_A          117 GPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQG  190 (615)
T ss_dssp             SCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEET
T ss_pred             ccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeC
Confidence            999999999999999999988    6888888  444444   68899999999999999975 6999999999999999


Q ss_pred             CCCceeeEeeccCc---CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-e---CCCCceEEEEEccCCCeEE
Q 001258          497 TNGAKQYIFEGHEA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       497 ~~~~~~~~~~~h~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~  569 (1113)
                      .+++++..+.+|..   .|.+++|+++ ++.+|++++.||.|++||+.+.+....+ .   .+...|.+++|+ ++.   
T Consensus       191 ~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~---  265 (615)
T 1pgu_A          191 PPFKFSASDRTHHKQGSFVRDVEFSPD-SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQ---  265 (615)
T ss_dssp             TTBEEEEEECSSSCTTCCEEEEEECST-TCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSS---
T ss_pred             CCcceeeeecccCCCCceEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCC---
Confidence            99999999999999   9999998754 1579999999999999999988777766 4   666677777766 554   


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                                        ++++++.|+.|++||+.+++.+..+..+..  ...+.++.|+ +++++++++.||.|++||+
T Consensus       266 ------------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~  326 (615)
T 1pgu_A          266 ------------------KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYEL  326 (615)
T ss_dssp             ------------------EEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEET
T ss_pred             ------------------EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEEC
Confidence                              799999999999999999999888876521  1346677775 8999999999999999999


Q ss_pred             CCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCcee
Q 001258          648 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK  727 (1113)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  727 (1113)
                      .++ +.+..+.+|...+..                                         ..+ ++   +++++.|+.|+
T Consensus       327 ~~~-~~~~~~~~~~~~v~~-----------------------------------------~~~-~~---l~~~~~dg~i~  360 (615)
T 1pgu_A          327 GHD-EVLKTISGHNKGITA-----------------------------------------LTV-NP---LISGSYDGRIM  360 (615)
T ss_dssp             TEE-EEEEEECCCSSCEEE-----------------------------------------EET-TT---TEEEETTSCEE
T ss_pred             CCC-cEEEEEeCCCCCEEE-----------------------------------------EEe-cC---cEEECCCCeEE
Confidence            886 666666666554331                                         112 22   89999999999


Q ss_pred             eEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccc
Q 001258          728 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  807 (1113)
Q Consensus       728 iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~  807 (1113)
                      +|++.         .+.   ..|...|.+++| +++..+++++.|+.+++|++.....                      
T Consensus       361 ~w~~~---------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~----------------------  405 (615)
T 1pgu_A          361 EWSSS---------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF----------------------  405 (615)
T ss_dssp             ETTTT---------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC----------------------
T ss_pred             EEEch---------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc----------------------
Confidence            99987         111   348899999999 6677899999999999998653211                      


Q ss_pred             cccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CCcEEE
Q 001258          808 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  886 (1113)
Q Consensus       808 ~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~i  886 (1113)
                                ...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+   +++|++++. ||.|++
T Consensus       406 ----------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~  471 (615)
T 1pgu_A          406 ----------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQV  471 (615)
T ss_dssp             ----------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEE
T ss_pred             ----------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEE
Confidence                      125788999999999999889999999999999888887 78889999998   679999999 999999


Q ss_pred             EEcccceee-eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEcc--
Q 001258          887 YNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ--  962 (1113)
Q Consensus       887 wd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp--  962 (1113)
                      ||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++||+.+++..     ....+ |.   ..|.+++|+|  
T Consensus       472 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~---~~v~~~~~sp~~  543 (615)
T 1pgu_A          472 FKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRT---SKINAISWKPAE  543 (615)
T ss_dssp             EETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCS---SCEEEEEECCCC
T ss_pred             EECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCC---CceeEEEEcCcc
Confidence            999988766 778899999999999999999999999999999999986543     22333 33   4899999999  


Q ss_pred             --------CCcEEEE-EcCCeEEEEeCCcc-ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          963 --------DQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       963 --------dg~~l~~-~~d~~v~v~d~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                              ++++|++ +.|+.|++||+.++ +.+..+.  +|...|++++|+||++ |++++.||.|++|++++
T Consensus       544 ~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          544 KGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             ccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence                    9999999 58999999999998 6666665  7899999999999999 99999999999999875

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-51  Score=516.61  Aligned_cols=593  Identities=10%  Similarity=0.055  Sum_probs=411.4

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+.|...|++++|+| |+ +|++++.|++|+|||+.+++.+..                   +. |.+.|++++|+|
T Consensus        51 ~~~~~~~~~~V~~l~fsp-g~-~L~S~s~D~~v~lWd~~~~~~~~~-------------------~~-~~~~V~~v~~sp  108 (902)
T 2oaj_A           51 VVIKLEDRSAIKEMRFVK-GI-YLVVINAKDTVYVLSLYSQKVLTT-------------------VF-VPGKITSIDTDA  108 (902)
T ss_dssp             EEEECSSCCCEEEEEEET-TT-EEEEEETTCEEEEEETTTCSEEEE-------------------EE-CSSCEEEEECCT
T ss_pred             EEEEcCCCCCEEEEEEcC-CC-EEEEEECcCeEEEEECCCCcEEEE-------------------Ec-CCCCEEEEEECC
Confidence            345566889999999999 88 599999999999999999887653                   22 567899999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeee--------eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQH--------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~--------~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  502 (1113)
                      ++++|++|+.||+|++||+.+++.....        ..+.+|.+.|.+++|+|++.. .+++|+.|++| +||+++++++
T Consensus       109 ~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~-~l~~g~~dg~v-lWd~~~~~~~  186 (902)
T 2oaj_A          109 SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG-TVLISYEYVTL-TYSLVENEIK  186 (902)
T ss_dssp             TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE-EEEEECSSCEE-EEETTTTEEE
T ss_pred             CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC-EEEEEeCCCcE-EEECCCCceE
Confidence            9999999999999999999988753110        235689999999999997543 68999999999 9999999999


Q ss_pred             eEeecc------------------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-----CC-------
Q 001258          503 YIFEGH------------------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-----AP-------  552 (1113)
Q Consensus       503 ~~~~~h------------------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~-------  552 (1113)
                      ..+.+|                  ...|.+++|+++  |.+|++++.||.|++||+++++......     .+       
T Consensus       187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspd--g~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~  264 (902)
T 2oaj_A          187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPN--SLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYI  264 (902)
T ss_dssp             EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTT--SSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCC
T ss_pred             EEEecccCCcCCCcccccccccccCCCeEEEEEcCC--CCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCC
Confidence            888766                  577999998754  6899999999999999999876544211     11       


Q ss_pred             ------CCceEEEEEccCCCeEEeccccCceeEEEecCCC-CEEEEEecC-----CcEEEEECC----------------
Q 001258          553 ------GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDD-----FSIKFWDMD----------------  604 (1113)
Q Consensus       553 ------~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d-----g~i~iwd~~----------------  604 (1113)
                            ...|.+++|++..                 +|++ ..+++|+.+     ..+.+|++.                
T Consensus       265 ~~~~~~~~~V~~v~w~~~~-----------------~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~  327 (902)
T 2oaj_A          265 RDSSTNAAKISKVYWMCEN-----------------NPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNY  327 (902)
T ss_dssp             CCCSSCCCEEEEEEEEECS-----------------STTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHH
T ss_pred             CCCccccCCeeEEEEEecC-----------------CCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhh
Confidence                  1234444443211                 2332 346666655     378899842                


Q ss_pred             --CCceEEEEccCCCCCCcCeEEECC----------CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          605 --SVQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       605 --~~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                        +.+....+... +...|.++.+.+          +...+++++.||.|++|++.++.........+......     .
T Consensus       328 ~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~-----~  401 (902)
T 2oaj_A          328 YANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL-----R  401 (902)
T ss_dssp             HHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB-----T
T ss_pred             hcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc-----C
Confidence              22334444321 123567777755          34578999999999999997763222211111000000     0


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                      +.+..                                       +..  .+...++|+..........    .+-.+|..
T Consensus       402 ~~v~~---------------------------------------~~~--s~~~~~~w~~~~~~~~~~~----~~l~G~~~  436 (902)
T 2oaj_A          402 PLATT---------------------------------------SMA--ASVPNKLWLGALSAAQNKD----YLLKGGVR  436 (902)
T ss_dssp             TBEEE---------------------------------------EEE--EEEEHHHHHHHHHTTBCCC----CSCCCSBC
T ss_pred             CCeeE---------------------------------------EEE--EEcCHHHHHHHHhcccCCC----CcccCCcC
Confidence            00000                                       000  0011223332210000000    11134677


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .+.+++|+|+++.+++++.|++|++||+..+......         ++...    +.. ..+.+|...|.+++|+||+++
T Consensus       437 ~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~---------~~~~~----l~~-~~~~~h~~~V~svafspdg~~  502 (902)
T 2oaj_A          437 TKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNA---------SFEVN----LSR-TLNKAKELAVDKISFAAETLE  502 (902)
T ss_dssp             CCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTB---------CEEEE----HHH-HTTCSSSCCEEEEEEETTTTE
T ss_pred             CCCcccccccCcEEEEecCCCcEEEEECCCccccCCc---------eEEee----chh-hcCCCCCCceeEEEecCCCCe
Confidence            7888999999999999999999999998754221000         00000    000 001248889999999999999


Q ss_pred             EEEEe-CCeEEEEECCCCc---------------------------------------------eeeeecCCCCCeeEEE
Q 001258          833 VMSAS-GGKISLFNMMTFK---------------------------------------------TMATFMPPPPAATFLA  866 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~---------------------------------------------~~~~~~~~~~~i~~l~  866 (1113)
                      ||+|+ ||+|+|||+.+++                                             ++..+.+|...|++++
T Consensus       503 LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~sva  582 (902)
T 2oaj_A          503 LAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAIN  582 (902)
T ss_dssp             EEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEE
T ss_pred             EEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEE
Confidence            99999 9999999998652                                             3677888999999999


Q ss_pred             EecCCCcEEEEEecCCcEEEEEcccceeee-----eec-ccccCeEEEEEc-----CCC---CEEEEEeCCCcEEEEeC-
Q 001258          867 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVSSGADSQLCVWSS-  931 (1113)
Q Consensus       867 ~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~L~s~s~D~~v~iwd~-  931 (1113)
                      ||| || +||+|+.|++|+|||+.+...+.     .+. +|.+.|++|+|+     |||   ++|++++.|++|++||+ 
T Consensus       583 fSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          583 NSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             ECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             ecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence            999 88 99999999999999998876653     343 899999999999     885   89999999999999999 


Q ss_pred             --CCCccccccccccCCCCCC--CCCCCceEE-Ec----------------------cCCcEEEEEcCCeEEEEeCCccc
Q 001258          932 --DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVHETQLAIFETTKLE  984 (1113)
Q Consensus       932 --~~~~~~~~~~~~~~~~~~~--~~~~i~~~~-~s----------------------pdg~~l~~~~d~~v~v~d~~~~~  984 (1113)
                        .+++..     ..+.++..  ....|..++ |+                      ++|..|++ .+..++||++.+++
T Consensus       661 p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~-~~~~ir~~~~~~~k  734 (902)
T 2oaj_A          661 PASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLIT-GFDDIRLITLGKSK  734 (902)
T ss_dssp             ECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEE-CSSEEEEECTTCCC
T ss_pred             cCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEE-eccceEEEeCcccc
Confidence              554432     12222210  013455554 55                      45555554 48899999999999


Q ss_pred             eeeccccCCCCCCeeEE---E------ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEe
Q 001258          985 CVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAH 1055 (1113)
Q Consensus       985 ~~~~~~~~~h~~~v~~l---~------~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~ 1055 (1113)
                      +.+...  .|.-.+.++   .      |++++..|++++.||+|++|++.+++.+..+.......   ...+..  ..|.
T Consensus       735 ~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~---~~~~~~--~~~~  807 (902)
T 2oaj_A          735 STHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA---AKYITE--SSVL  807 (902)
T ss_dssp             EEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC---HHHHTT--CEEC
T ss_pred             ceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc---cccccc--eEEc
Confidence            987764  445556665   5      78899999999999999999999999998876422210   011122  4555


Q ss_pred             CCCCCEEEEEeC
Q 001258         1056 PQEPNEFALGLS 1067 (1113)
Q Consensus      1056 p~d~~~l~s~~~ 1067 (1113)
                      + +|+.+.-.+.
T Consensus       808 ~-~G~~~~~~~~  818 (902)
T 2oaj_A          808 R-NGDIAIRVSE  818 (902)
T ss_dssp             T-TSCEEEECSS
T ss_pred             C-CCCEEEEeCh
Confidence            5 6777665543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=1.5e-45  Score=466.05  Aligned_cols=465  Identities=17%  Similarity=0.221  Sum_probs=372.1

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      .+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+.                   .+.+|.+.|.+++|+|+|++
T Consensus        10 ~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~   69 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW   69 (814)
T ss_dssp             EEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred             ecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence            449999999999999995 9999999999999999988776                   36789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCEE
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY  513 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v~  513 (1113)
                      |++|+.||.|+|||+.+++.+.   .+.+|.+.|++++|+|+++  ++++++.|++|++||+.++ .....+.+|...|.
T Consensus        70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~  144 (814)
T 3mkq_A           70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM  144 (814)
T ss_dssp             EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred             EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence            9999999999999999998665   6789999999999999999  7999999999999999987 67788899999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      +++|++. ++..+++++.||.|++||+.+......+..+. ..+..++|+|.                   +++.+++++
T Consensus       145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~~~  204 (814)
T 3mkq_A          145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMITA  204 (814)
T ss_dssp             EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCS-------------------TTCCEEEEE
T ss_pred             EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEEC-------------------CCCCEEEEE
Confidence            9998762 44799999999999999998766655544333 44444444441                   055689999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      +.||.|++||+.+++.+..+..+  ...|.+++|+|+++++++++.||.|++||+.++ +....+.              
T Consensus       205 ~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~--------------  267 (814)
T 3mkq_A          205 SDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN--------------  267 (814)
T ss_dssp             CTTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC--------------
T ss_pred             eCCCEEEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee--------------
Confidence            99999999999999999888766  447999999999999999999999999998776 2222221              


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                                                  .+..
T Consensus       268 ----------------------------------------------------------------------------~~~~  271 (814)
T 3mkq_A          268 ----------------------------------------------------------------------------VGLE  271 (814)
T ss_dssp             ----------------------------------------------------------------------------CSSS
T ss_pred             ----------------------------------------------------------------------------cCCC
Confidence                                                                                        1456


Q ss_pred             ceEEEEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          753 KISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       753 ~i~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      .+.+++|+|++.. +++++.++.+.+|++.                                     .....+.++|+|+
T Consensus       272 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~g~  314 (814)
T 3mkq_A          272 RSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDPVGK  314 (814)
T ss_dssp             SEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECSSSE
T ss_pred             cEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECCCCC
Confidence            7899999999875 3666667778888643                                     1234578889999


Q ss_pred             EEEEEe-CC---eEEE------EECCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          832 YVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       832 ~l~~~s-dg---~i~v------wd~~~~~~~----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      .+++++ +.   .+..      |++..+...    ..+..+...+.+++|+| +++++++++ ||.+.+|++.....   
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~---  389 (814)
T 3mkq_A          315 LVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN---  389 (814)
T ss_dssp             EEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE---
T ss_pred             EEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc---
Confidence            888876 22   1222      333333322    33455667799999999 899999988 89999999865443   


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC---cEEEE-EcCC
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-VHET  973 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg---~~l~~-~~d~  973 (1113)
                        .+.+.|++++|+||+++|++++.|++|++|+.-.             ++.   ..+..++|+|+|   .+|++ +.|+
T Consensus       390 --~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~~d~  451 (814)
T 3mkq_A          390 --KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVKSDG  451 (814)
T ss_dssp             --EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEEETT
T ss_pred             --cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEecCC
Confidence              2456789999999999999999999999996332             111   256788999998   35555 7999


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE------eCCCcEEEE
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVF 1022 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~------~~Dg~v~vw 1022 (1113)
                      .|++||+.+++.+..+.  .|..   .++|+|||++|+++      +.++.+.+|
T Consensus       452 ~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~  501 (814)
T 3mkq_A          452 FVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLL  501 (814)
T ss_dssp             EEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred             EEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence            99999999999988875  3332   99999999999999      555555454

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.6e-44  Score=450.93  Aligned_cols=466  Identities=17%  Similarity=0.214  Sum_probs=376.4

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|.+++|||+|++||+|+.||.|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++++.|+.|++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence            478899999999999999999999999999999999988666   6789999999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEcc-CCCeEEecc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSA-DGTRTYQGF  572 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~~~~~~  572 (1113)
                      |+.+++.+..+.+|.+.|.+++|+++  +.+|++++.||.|++||+.+. .....+..+...+.+++|+| ++       
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-------  153 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPT--KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDP-------  153 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSS--SSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEE-------
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCC--CCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCC-------
Confidence            99999999999999999999998754  479999999999999999876 33445666666677777666 44       


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--CCCEEEEEECCCcEEEEEcCCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                    +.+++++.||.|++||+.++.....+..+. ...+.+++|+|  ++.++++++.||.|++||..++
T Consensus       154 --------------~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~  218 (814)
T 3mkq_A          154 --------------STFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK  218 (814)
T ss_dssp             --------------EEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT
T ss_pred             --------------CEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence                          369999999999999999888877776543 24789999999  9999999999999999998776


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       .....+.                                                                        
T Consensus       219 -~~~~~~~------------------------------------------------------------------------  225 (814)
T 3mkq_A          219 -SCVATLE------------------------------------------------------------------------  225 (814)
T ss_dssp             -EEEEEEE------------------------------------------------------------------------
T ss_pred             -cEEEEEc------------------------------------------------------------------------
Confidence             2222221                                                                        


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                        .|...|.+++|+|+++.+++++.||.|++|++...                      .....
T Consensus       226 ------------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~----------------------~~~~~  265 (814)
T 3mkq_A          226 ------------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY----------------------KVEKT  265 (814)
T ss_dssp             ------------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC----------------------SEEEE
T ss_pred             ------------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC----------------------cEEEE
Confidence                              15678999999999999999999999999987532                      21111


Q ss_pred             ccCCCCCCCCccEEEEecCCC--EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc---EE
Q 001258          811 DVTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQ  885 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~--~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~---v~  885 (1113)
                       +.  .+...+.+++|+|+++  +++++.++.+.+|++....            ..+.++| ++.++++++.+..   +.
T Consensus       266 -~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~  329 (814)
T 3mkq_A          266 -LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIF  329 (814)
T ss_dssp             -EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEE
T ss_pred             -ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeee
Confidence             11  2677899999999998  5777779999999976532            3567888 8888888776652   21


Q ss_pred             E------EEcccceee----eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC
Q 001258          886 I------YNVRVDEVK----SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  955 (1113)
Q Consensus       886 i------wd~~~~~~~----~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i  955 (1113)
                      .      |++..+...    ..+..|...+++++|+|+|++|++++ |+.+.+|++.......             .+.+
T Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i  395 (814)
T 3mkq_A          330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKC  395 (814)
T ss_dssp             EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEEC
T ss_pred             eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCce
Confidence            1      233333222    34566778899999999999999998 8999999986532211             1367


Q ss_pred             ceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC---CEEEEEeCCCcEEEEecCCCceee
Q 001258          956 TRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRC 1031 (1113)
Q Consensus       956 ~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~Dg~v~vwd~~~~~~~~ 1031 (1113)
                      ..++|+|||++++++ .++.+++|+.-          .+|...+.+++|+||+   ++|++++.|+.|++||+.+++.+.
T Consensus       396 ~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~  465 (814)
T 3mkq_A          396 QDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVR  465 (814)
T ss_dssp             SEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEE
T ss_pred             EEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEE
Confidence            899999999999995 78999999632          2567789999999999   688999999999999999999998


Q ss_pred             ecCCCcccCCCcccCccceEEEEeCCCCCEEEEE------eCCCcEEEEe
Q 001258         1032 RINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1075 (1113)
Q Consensus      1032 ~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~------~~Dg~v~vW~ 1075 (1113)
                      .+.       +|..     .+.|+| ||++|+++      +.++.+.+|.
T Consensus       466 ~~~-------~~~~-----~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          466 RID-------VNAK-----DVIWSD-NGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EES-------SCEE-----EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEe-------cCCC-----EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence            876       4443     589999 78999999      6555555553

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.3e-43  Score=406.73  Aligned_cols=306  Identities=16%  Similarity=0.307  Sum_probs=262.4

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      ..+|.++|++++|+|+++ +|++|+.||+|+|||+.+++...                   .+.+|.+.|.+++|+|+|+
T Consensus       104 l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~  163 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGK  163 (410)
T ss_dssp             EECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSS
T ss_pred             ecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCC
Confidence            346999999999999999 59999999999999999988765                   4789999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  513 (1113)
                      +|++|+.|++|+|||+.+++++.   ++.+|...|.+++|+|++.  ++++|+.|++|++||+.++.++.++.+|...|.
T Consensus       164 ~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~  238 (410)
T 1vyh_C          164 LLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR  238 (410)
T ss_dssp             EEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             EEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEE
Confidence            99999999999999999988665   7889999999999999999  799999999999999999999999999999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      +++++  +++.++++|+.|+.|++||+.+......+..|...|.+++|+|++......... ..........+.++++|+
T Consensus       239 ~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sgs  315 (410)
T 1vyh_C          239 MVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSGS  315 (410)
T ss_dssp             EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEEE
T ss_pred             EEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEEe
Confidence            99865  556899999999999999999988888899999999999999986532111111 111122334577899999


Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCC
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  673 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1113)
                      .|+.|++||+.++.++..+..|  ...|.+++|+|++++|++++.||.|++||+.++ +.+..+.               
T Consensus       316 ~D~~i~iwd~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~---------------  377 (410)
T 1vyh_C          316 RDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN---------------  377 (410)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE---------------
T ss_pred             CCCeEEEEECCCCceEEEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc---------------
Confidence            9999999999999999998866  447999999999999999999999999998766 3322221               


Q ss_pred             CcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCc
Q 001258          674 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  753 (1113)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~  753 (1113)
                                                                                                 +|...
T Consensus       378 ---------------------------------------------------------------------------~h~~~  382 (410)
T 1vyh_C          378 ---------------------------------------------------------------------------AHEHF  382 (410)
T ss_dssp             ---------------------------------------------------------------------------CCSSC
T ss_pred             ---------------------------------------------------------------------------CCCCc
Confidence                                                                                       26778


Q ss_pred             eEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258          754 ISRLIFTNSGNAILALASNAIHLLWKW  780 (1113)
Q Consensus       754 i~~~~~s~~~~~l~~~~~dg~i~vw~~  780 (1113)
                      |.+++|+|++..|++++.|+.|++|+.
T Consensus       383 v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          383 VTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999999975

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-39  Score=372.30  Aligned_cols=306  Identities=21%  Similarity=0.347  Sum_probs=262.7

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      +.+|.++|++++|+|++.+|++|+.||+|+|||+.+++...   ++.+|.+.|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            67899999999999999999999999999999999998665   7889999999999999999  899999999999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  575 (1113)
                      +.+++++..+.+|...|.+++|+++  +.+|++|+.|++|++||+.++.....+..|...+..+.+++++.         
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~--~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~---------  247 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPN--GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT---------  247 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS---------
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC---------
Confidence            9999999999999999999998764  57999999999999999999888878877777777777766665         


Q ss_pred             ceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258          576 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       576 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                                  ++++++.|+.|++||+.++++...+..|.  ..|.+++|+|++.+.                   ...
T Consensus       248 ------------~l~s~s~D~~v~vwd~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~-------------------~~~  294 (410)
T 1vyh_C          248 ------------LIASCSNDQTVRVWVVATKECKAELREHR--HVVECISWAPESSYS-------------------SIS  294 (410)
T ss_dssp             ------------EEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECCSCGGG-------------------GGG
T ss_pred             ------------EEEEEcCCCeEEEEECCCCceeeEecCCC--ceEEEEEEcCccccc-------------------chh
Confidence                        79999999999999999998888887654  468888888765310                   000


Q ss_pred             ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258          656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  735 (1113)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~  735 (1113)
                      ..                                                                              
T Consensus       295 ~~------------------------------------------------------------------------------  296 (410)
T 1vyh_C          295 EA------------------------------------------------------------------------------  296 (410)
T ss_dssp             GC------------------------------------------------------------------------------
T ss_pred             hh------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258          736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  815 (1113)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~  815 (1113)
                                    .            +                                                    
T Consensus       297 --------------~------------~----------------------------------------------------  298 (410)
T 1vyh_C          297 --------------T------------G----------------------------------------------------  298 (410)
T ss_dssp             --------------C------------S----------------------------------------------------
T ss_pred             --------------c------------c----------------------------------------------------
Confidence                          0            0                                                    


Q ss_pred             CCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258          816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  894 (1113)
                           ........++.+|++|+ |++|++||+.++.++..+.+|...|.+++|+| ++++|++|+.||.|++||+.++++
T Consensus       299 -----~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~  372 (410)
T 1vyh_C          299 -----SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC  372 (410)
T ss_dssp             -----CC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC
T ss_pred             -----ccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCce
Confidence                 00001112467888888 89999999999999999999999999999999 899999999999999999999999


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      +..+.+|...|++++|+|++.+|++|+.|++|++|+++
T Consensus       373 ~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             EEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            99999999999999999999999999999999999863

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.8e-38  Score=356.13  Aligned_cols=293  Identities=17%  Similarity=0.271  Sum_probs=254.4

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      .+.+|.+.|++++|+|+|++ |++|+.||+|+|||..+++...                   .+..|...|.+++|+|+|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~sp~g  118 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYAPSG  118 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEECTTS
T ss_pred             EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEECCCC
Confidence            34459999999999999995 9999999999999999887765                   255688899999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCce---eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      .+||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .|++++.|++|++||+++++++..+.+|.
T Consensus       119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~  196 (354)
T 2pbi_B          119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG  196 (354)
T ss_dssp             SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence            9999999999999999875421   122335778999999999999999  79999999999999999999999999999


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ..|.+++|++.+++.+|++|+.||.|++||++++.....+..|...|.+++|+|++.                     +|
T Consensus       197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~l  255 (354)
T 2pbi_B          197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGD---------------------AF  255 (354)
T ss_dssp             SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EE
T ss_pred             CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCC---------------------EE
Confidence            999999998887788999999999999999999888777877777777777777665                     79


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1113)
                      ++++.|+.|++||+++++.+..+..+.....+.+++|+|++++|++|+.|+.|++||+.++ ..+..+            
T Consensus       256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------  322 (354)
T 2pbi_B          256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------  322 (354)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence            9999999999999999888877765554456789999999999999999999999998776 222222            


Q ss_pred             CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258          670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  749 (1113)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  749 (1113)
                                                                                                    .+
T Consensus       323 ------------------------------------------------------------------------------~~  324 (354)
T 2pbi_B          323 ------------------------------------------------------------------------------FG  324 (354)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------EC
Confidence                                                                                          12


Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                      |...|.+++|+|+|++|++++.|+.|++|+
T Consensus       325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            778899999999999999999999999995

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-38  Score=354.46  Aligned_cols=290  Identities=19%  Similarity=0.311  Sum_probs=252.0

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+.                   .+..|...|.+++|+|+|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~  109 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTS
T ss_pred             eecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCC
Confidence            3445999999999999999 49999999999999999988765                   366789999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCce-eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcC
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      ++|++|+.|+.|++|++.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++++..+.+|.+.
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~  186 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD  186 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence            9999999999999999987642 233446889999999999999875   889999999999999999999999999999


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      |.+++|++  ++.++++|+.||.|++||+++......+..|...|.+++|+|++.                     +|++
T Consensus       187 v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------------~l~s  243 (340)
T 1got_B          187 VMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN---------------------AFAT  243 (340)
T ss_dssp             EEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSS---------------------EEEE
T ss_pred             eEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCC---------------------EEEE
Confidence            99999875  457999999999999999998887777777777777777776665                     7999


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      ++.||.|++||+++++.+..+..+.....|.+++|+|++++|++|+.|+.|++||+.++ .....+              
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~--------------  308 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL--------------  308 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence            99999999999999988888765554557899999999999999999999999998766 222222              


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                                                                  .+|.
T Consensus       309 ----------------------------------------------------------------------------~~h~  312 (340)
T 1got_B          309 ----------------------------------------------------------------------------AGHD  312 (340)
T ss_dssp             ----------------------------------------------------------------------------ECCS
T ss_pred             ----------------------------------------------------------------------------ecCC
Confidence                                                                                        1277


Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                      ..|.+++|+|++..|++++.|+.|++|+
T Consensus       313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            8899999999999999999999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.4e-38  Score=347.45  Aligned_cols=289  Identities=18%  Similarity=0.291  Sum_probs=250.3

Q ss_pred             cccCCCcceEEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258          415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  490 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  490 (1113)
                      .+.+|.+.|++++|+|+    +++|++|+.|++|+||++.+++.. ....+.+|...|.+++|++++.  ++++++.|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~  103 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAH  103 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCc
Confidence            36789999999999985    679999999999999999876532 3346889999999999999999  8999999999


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      |++||+.+++++..+..|...+.+++|++  ++.+|++++.||.|++||+++......+..+...+.+++|+|+++    
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~----  177 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGK----  177 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSS----
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCC----
Confidence            99999999999999999999999999765  558999999999999999998887777777766666666666665    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                       +|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++++|++++.|+.|++||+.++
T Consensus       178 -----------------~lasg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          178 -----------------YLASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             -----------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             -----------------EEEEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence                             7999999999999999999999988766  457999999999999999999999999998654


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       .....+                                                                         
T Consensus       239 -~~~~~~-------------------------------------------------------------------------  244 (321)
T 3ow8_A          239 -NLAGTL-------------------------------------------------------------------------  244 (321)
T ss_dssp             -CEEEEE-------------------------------------------------------------------------
T ss_pred             -ceeEEE-------------------------------------------------------------------------
Confidence             111000                                                                         


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (321)
T 3ow8_A          245 --------------------------------------------------------------------------------  244 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                        .  +|...|.+++|+|++++|++++ |++|++||+.+++++..+.+|...|.+++|+| ++++|++++.||.|+|||+
T Consensus       245 --~--~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          245 --S--GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             --C--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred             --c--CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence              0  1677788899999999999998 89999999999999999999999999999999 8999999999999999996


Q ss_pred             c
Q 001258          890 R  890 (1113)
Q Consensus       890 ~  890 (1113)
                      .
T Consensus       320 p  320 (321)
T 3ow8_A          320 P  320 (321)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.8e-38  Score=346.43  Aligned_cols=287  Identities=15%  Similarity=0.217  Sum_probs=249.6

Q ss_pred             ccCCCCcEEEEEcCC----CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          355 LNQGSSPMSMDFHPV----QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       355 ~~h~~~V~~~~~spd----g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      .+|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++.....                 .+.+|...|.+++|++
T Consensus        29 ~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~~-----------------~l~gh~~~v~~~~~~~   90 (321)
T 3ow8_A           29 QAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQW-----------------SLEGHQLGVVSVDISH   90 (321)
T ss_dssp             TSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEEE-----------------EECCCSSCEEEEEECS
T ss_pred             ccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeeee-----------------eeccCCCCEEEEEECC
Confidence            359999999999985    45 5999999999999999876543211                 3789999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+.+++....+..|..
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~  165 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGK  165 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence            99999999999999999999998766   6778999999999999999  799999999999999999999999999999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|.+++|++  ++.+|++|+.||.|++||+++++....+..+...|.+++|+|+++                     +|+
T Consensus       166 ~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~---------------------~l~  222 (321)
T 3ow8_A          166 FILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ---------------------LLV  222 (321)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSC---------------------EEE
T ss_pred             eEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCC---------------------EEE
Confidence            999999765  558999999999999999998877777777777777777666665                     799


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  670 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  670 (1113)
                      +++.|+.|++||+.+++....+..|  ...|.+++|+|++++|++++.|++|++||+.++ +.+..+.            
T Consensus       223 s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~~------------  287 (321)
T 3ow8_A          223 TASDDGYIKIYDVQHANLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTFF------------  287 (321)
T ss_dssp             EECTTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC------------
T ss_pred             EEcCCCeEEEEECCCcceeEEEcCC--CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEEc------------
Confidence            9999999999999999998888766  457999999999999999999999999999877 3333322            


Q ss_pred             CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccc
Q 001258          671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  750 (1113)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  750 (1113)
                                                                                                    .|
T Consensus       288 ------------------------------------------------------------------------------~h  289 (321)
T 3ow8_A          288 ------------------------------------------------------------------------------DH  289 (321)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          16


Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKW  780 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~  780 (1113)
                      ...|.+++|+|+++.|++++.|+.|++||.
T Consensus       290 ~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          290 QDQVWGVKYNGNGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence            678999999999999999999999999985

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-38  Score=364.99  Aligned_cols=339  Identities=15%  Similarity=0.200  Sum_probs=272.3

Q ss_pred             cCCCcceEEEEEcCCCC-eEEEEeCCCeEEEEEc----cCCcee---eeeeeeec----------ccCCeeEEEEcCCCC
Q 001258          417 KDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDEV---RQHLEIDA----------HVGGVNDIAFSHPNK  478 (1113)
Q Consensus       417 ~~h~~~V~~l~~spdg~-~las~~~d~~i~iwd~----~~~~~~---~~~~~l~~----------h~~~V~~v~~s~~~~  478 (1113)
                      ..|.+.|++++|+|+|+ +||+|+.||.|++||+    .+++.+   .....+..          |.+.|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45668999999999999 9999999999999999    887720   01112322          688999999999999


Q ss_pred             eeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCc---
Q 001258          479 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW---  555 (1113)
Q Consensus       479 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---  555 (1113)
                        +|++++.|+.|++|| .+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+.+......+..+...   
T Consensus       122 --~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  196 (425)
T 1r5m_A          122 --SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSS  196 (425)
T ss_dssp             --EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred             --EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence              799999999999999 78888999999999999999875  4579999999999999999987777666655543   


Q ss_pred             eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEE
Q 001258          556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  635 (1113)
Q Consensus       556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  635 (1113)
                      +....+.+++.         .+..++|++++ .+++++.+|.|++||+.+++.+..+..+  ...|.+++|+|++++|++
T Consensus       197 ~~~~~~~~~~~---------~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~  264 (425)
T 1r5m_A          197 INAENHSGDGS---------LGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGH--HGPISVLEFNDTNKLLLS  264 (425)
T ss_dssp             ---------CC---------CBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCC--SSCEEEEEEETTTTEEEE
T ss_pred             eeeccccCCcc---------eeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccC--CCceEEEEECCCCCEEEE
Confidence            11111111111         24445555543 4889999999999999999988888765  457999999999999999


Q ss_pred             EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258          636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  715 (1113)
Q Consensus       636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (1113)
                      ++.|+.|++||+.++. ....+                                                          
T Consensus       265 ~~~d~~i~i~d~~~~~-~~~~~----------------------------------------------------------  285 (425)
T 1r5m_A          265 ASDDGTLRIWHGGNGN-SQNCF----------------------------------------------------------  285 (425)
T ss_dssp             EETTSCEEEECSSSBS-CSEEE----------------------------------------------------------
T ss_pred             EcCCCEEEEEECCCCc-cceEe----------------------------------------------------------
Confidence            9999999999976541 11000                                                          


Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeee
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  795 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  795 (1113)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (425)
T 1r5m_A          286 --------------------------------------------------------------------------------  285 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001258          796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  874 (1113)
Q Consensus       796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~  874 (1113)
                                       .  .|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...+.+++|+| ++++
T Consensus       286 -----------------~--~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~  344 (425)
T 1r5m_A          286 -----------------Y--GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQK  344 (425)
T ss_dssp             -----------------C--CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSE
T ss_pred             -----------------c--CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCE
Confidence                             0  155667788888888 777777 88999999999888888988999999999999 8999


Q ss_pred             EEEEecCCcEEEEEcccce--------------------eeeeeccccc--CeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          875 IAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       875 la~g~~dg~v~iwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      |++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|++++|++++.|+.|++|+++
T Consensus       345 l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          345 YAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            9999999999999999888                    8899999977  99999999999999999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.4e-37  Score=343.81  Aligned_cols=300  Identities=19%  Similarity=0.265  Sum_probs=246.6

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      .+|.+.|++++|+|++..+|++|+.|++|++||+..........              ...+.+|...|.+++|+|+|++
T Consensus        14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~--------------~~~~~~h~~~v~~~~~s~dg~~   79 (319)
T 3frx_A           14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--------------VRSFKGHSHIVQDCTLTADGAY   79 (319)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEE--------------EEEEECCSSCEEEEEECTTSSE
T ss_pred             ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccccc--------------ceEEeCCcccEEEEEECCCCCE
Confidence            35999999999999874479999999999999987543221111              1147899999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      |++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||+. +.++..+.+|...|.+
T Consensus        80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~  153 (319)
T 3frx_A           80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQ  153 (319)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEE
T ss_pred             EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEE
Confidence            9999999999999999998765   6889999999999999999  79999999999999985 6678889999999999


Q ss_pred             EeeeecC----CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          515 VCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       515 ~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      +++.+..    ++.++++++.|+.|++||+.+......+..|...|.+++|+|+|+                     +|+
T Consensus       154 ~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~---------------------~l~  212 (319)
T 3frx_A          154 VRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGT---------------------LIA  212 (319)
T ss_dssp             EEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSS---------------------EEE
T ss_pred             EEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCC---------------------EEE
Confidence            9987643    345899999999999999998777777777777777777777665                     799


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  670 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  670 (1113)
                      +++.||.|++||+.+++.+..+..+   ..|.+++|+|++.++++++.+ .+++|++... .....+..+...       
T Consensus       213 s~~~dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~-------  280 (319)
T 3frx_A          213 SAGKDGEIMLWNLAAKKAMYTLSAQ---DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG-------  280 (319)
T ss_dssp             EEETTCEEEEEETTTTEEEEEEECC---SCEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT-------
T ss_pred             EEeCCCeEEEEECCCCcEEEEecCC---CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc-------
Confidence            9999999999999999998888754   368999999999999988865 5999998765 222222110000       


Q ss_pred             CCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccc
Q 001258          671 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  750 (1113)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~  750 (1113)
                                                                                                 ....+
T Consensus       281 ---------------------------------------------------------------------------~~~~~  285 (319)
T 3frx_A          281 ---------------------------------------------------------------------------YSKAA  285 (319)
T ss_dssp             ---------------------------------------------------------------------------CCGGG
T ss_pred             ---------------------------------------------------------------------------cccCc
Confidence                                                                                       00125


Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                      ...+.+++|+|+|++|++++.|+.|++|++.+
T Consensus       286 ~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          286 EPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             CcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            56789999999999999999999999999753

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=2.1e-37  Score=345.93  Aligned_cols=286  Identities=15%  Similarity=0.193  Sum_probs=247.9

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw  124 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred             eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence            478999999999999999999999999999999999988665   6788999999999999999  89999999999999


Q ss_pred             eCCCC----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          495 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       495 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      |+.++    .....+.+|.+.|.++.|++..   .+++++.|+.|++||+.++.....+..|...|.+++|+|+++    
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~----  197 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR----  197 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETT---EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS----
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCC---cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCC----
Confidence            99875    3456788999999999987543   599999999999999998877777777777777777777665    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                       ++++|+.|+.|++||+.++..+..+..|  ...|.+++|+|++++|++++.||+|++||+.++
T Consensus       198 -----------------~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~  258 (340)
T 1got_B          198 -----------------LFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             -----------------EEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             -----------------EEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence                             7999999999999999999999988766  447999999999999999999999999998765


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                      . .+..+.                                                                        
T Consensus       259 ~-~~~~~~------------------------------------------------------------------------  265 (340)
T 1got_B          259 Q-ELMTYS------------------------------------------------------------------------  265 (340)
T ss_dssp             E-EEEEEC------------------------------------------------------------------------
T ss_pred             c-EEEEEc------------------------------------------------------------------------
Confidence            1 111000                                                                        


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                         +                                                            
T Consensus       266 -------------------~------------------------------------------------------------  266 (340)
T 1got_B          266 -------------------H------------------------------------------------------------  266 (340)
T ss_dssp             -------------------C------------------------------------------------------------
T ss_pred             -------------------c------------------------------------------------------------
Confidence                               0                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                          ..+...|.+++|+|+|++|++|+ |+.|++||+.+++.+..+.+|...|.+++|+| ++.+||+|+.||.|+|||
T Consensus       267 ----~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          267 ----DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ----TTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             ----CCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence                00234577888999999999988 89999999999999999999999999999999 899999999999999996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.3e-38  Score=352.56  Aligned_cols=313  Identities=15%  Similarity=0.200  Sum_probs=231.3

Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC------CeEEEEEccccccCCCC
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN------AIHLLWKWQRTERNSSG  789 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~  789 (1113)
                      .++.++.+.....|+++....           ..|...|.+++|+|||++|++++.|      +.+++|+.         
T Consensus        18 ~~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~---------   77 (357)
T 4g56_B           18 LYFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKD---------   77 (357)
T ss_dssp             ---------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESS---------
T ss_pred             eEEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEEC---------
Confidence            344555566778888763211           2488999999999999999999984      45555543         


Q ss_pred             ceeeeecCeecCCCCccccccc-cCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceee----eecCCCCCeeE
Q 001258          790 KATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATF  864 (1113)
Q Consensus       790 ~~~~~~~~~lw~~~~g~~~~~~-~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~  864 (1113)
                                   .++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++
T Consensus        78 -------------~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~  144 (357)
T 4g56_B           78 -------------PEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKT  144 (357)
T ss_dssp             -------------CC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEE
T ss_pred             -------------CCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEE
Confidence                         333221111 111237888999999999987776669999999998876543    34578999999


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccc
Q 001258          865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQ  943 (1113)
Q Consensus       865 l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~  943 (1113)
                      ++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++++|++++. ++++++.|++|++||+.+++....... 
T Consensus       145 v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-  222 (357)
T 4g56_B          145 LSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-  222 (357)
T ss_dssp             EEECS-SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-
T ss_pred             EEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-
Confidence            99999 899999999999999999999999999999999999999999875 789999999999999988654322111 


Q ss_pred             cCCCCCCCCCCCceEEEccCC-cEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEE
Q 001258          944 IPTGRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVC 1020 (1113)
Q Consensus       944 ~~~~~~~~~~~i~~~~~spdg-~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~ 1020 (1113)
                        ..+   ...+.+++|+|++ .+|++ +.|+.|++||+.+++++..+.  +|...|++++|+|++ ++|++|+.|++|+
T Consensus       223 --~~~---~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~  295 (357)
T 4g56_B          223 --CAS---DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVA  295 (357)
T ss_dssp             --TTC---CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred             --ccc---cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEE
Confidence              111   1367899999985 56777 488999999999999888776  789999999999997 5799999999999


Q ss_pred             EEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1021 VFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1021 vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |||+.+++.+..+        +|.+.|+.  ++|+|.|+.+|++++.||+|++|++++..
T Consensus       296 iwd~~~~~~~~~~--------~H~~~V~~--vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          296 VLDADFSEVFRDL--------SHRDFVTG--VAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EECTTSCEEEEEC--------CCSSCEEE--EEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             EEECCCCcEeEEC--------CCCCCEEE--EEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            9999999887543        78888885  89999889999999999999999997644

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.5e-37  Score=339.28  Aligned_cols=251  Identities=22%  Similarity=0.370  Sum_probs=217.1

Q ss_pred             Eec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          353 RTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       353 ~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      +++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+.                   .+.+|...|.+++|+|+
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~~   66 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIAR   66 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGG
T ss_pred             EeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeCC
Confidence            444 49999999999999995 9999999999999999988765                   36789999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCc
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEA  510 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~  510 (1113)
                      +++|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||++++ .....+.+|..
T Consensus        67 ~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~  141 (304)
T 2ynn_A           67 KNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEH  141 (304)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCS
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCC
Confidence            9999999999999999999998765   7889999999999999999  7999999999999999987 45567899999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      .|.+++|+|. ++.+|++|+.|+.|++||+.+......+.. +...+..+.+++.                   +++.+|
T Consensus       142 ~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l  201 (304)
T 2ynn_A          142 FVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYM  201 (304)
T ss_dssp             CEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEE
T ss_pred             cEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEE
Confidence            9999998763 346999999999999999987665544432 3344444444432                   245689


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++++.|+.|++||+.+++++..+..|  ...|.+++|+|++++|++|+.||+|++||..++
T Consensus       202 ~s~s~D~~i~iWd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~  260 (304)
T 2ynn_A          202 ITASDDLTIKIWDYQTKSCVATLEGH--MSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY  260 (304)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEcCCCeEEEEeCCCCccceeeCCC--CCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            99999999999999999999999876  457999999999999999999999999999877

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=345.56  Aligned_cols=208  Identities=16%  Similarity=0.233  Sum_probs=173.0

Q ss_pred             cccCCCc-ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          415 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       415 ~~~~h~~-~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .+.+|.+ .|++++|||||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence            4678887 999999999999999999999999999998865433333468999999999999999  8999999999999


Q ss_pred             EeCCCC--ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeE
Q 001258          494 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       494 wd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      ||+.++  +++..+.+|...|.+++|++  ++.+|++|+.|+.|++||+......   ..+..|...|.+++|+|     
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-----  160 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWAP--SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-----  160 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-----
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEeC--CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-----
Confidence            998876  45778999999999999876  4579999999999999999875432   23444555555555555     


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE--EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  646 (1113)
                                      ++.+|++++.|+.|++||..+++..  ..+..  +...|.+++|+|++++|++++.|++|++|+
T Consensus       161 ----------------~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~--h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          161 ----------------SQELLASASYDDTVKLYREEEDDWVCCATLEG--HESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             ----------------SSSCEEEEETTSCEEEEEEETTEEEEEEEECC--CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ----------------CCCEEEEEeCCCcEEEEEecCCCEEEEEEecC--CCCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence                            4457999999999999999887644  44544  456899999999999999999999999998


Q ss_pred             cCC
Q 001258          647 TSD  649 (1113)
Q Consensus       647 ~~~  649 (1113)
                      ...
T Consensus       223 ~~~  225 (345)
T 3fm0_A          223 QYL  225 (345)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=9.8e-38  Score=354.40  Aligned_cols=299  Identities=18%  Similarity=0.296  Sum_probs=249.0

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      +.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++...                   .+.+|...|.+++|+|+|+
T Consensus        62 l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s~~g~  121 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFAPNGQ  121 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEECTTSS
T ss_pred             ccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEECCCCC
Confidence            3459999999999999995 9999999999999999988765                   3678999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe----
Q 001258          434 LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF----  505 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~----  505 (1113)
                      +||+|+.|+.|+|||+.+...    ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++++..+    
T Consensus       122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~~~  200 (380)
T 3iz6_a          122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGSEF  200 (380)
T ss_dssp             EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECCCS
T ss_pred             EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeeccc
Confidence            999999999999999975421    1122357899999999999998654 6999999999999999999998887    


Q ss_pred             -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                       .+|...|.+++|++ .++.++++|+.||.|++||++. ......+..|...|.+++|+|++.                 
T Consensus       201 ~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~-----------------  262 (380)
T 3iz6_a          201 PSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-----------------  262 (380)
T ss_dssp             SSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSS-----------------
T ss_pred             CCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCC-----------------
Confidence             67999999999865 3557999999999999999984 355556677777777777666665                 


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCC-----CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                          +|++++.|++|++||+.+++.+..+..+..     ...|.+++|+|+|++|++|+.||.|++||..++ +....+.
T Consensus       263 ----~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~~~  337 (380)
T 3iz6_a          263 ----RFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLNLG  337 (380)
T ss_dssp             ----EEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEEEC
T ss_pred             ----eEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEEEe
Confidence                799999999999999999999888765422     234889999999999999999999999998766 2222110


Q ss_pred             cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258          659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  738 (1113)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~  738 (1113)
                      .                                                                               
T Consensus       338 ~-------------------------------------------------------------------------------  338 (380)
T 3iz6_a          338 T-------------------------------------------------------------------------------  338 (380)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                             ...+|...|.+++|+|+|+.|++++.|+.|++|++..
T Consensus       339 -------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          339 -------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             -------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence                   0023778899999999999999999999999999763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.9e-38  Score=352.18  Aligned_cols=322  Identities=14%  Similarity=0.174  Sum_probs=232.0

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-  440 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-  440 (1113)
                      ..+.+.+++.  ++.++.+.....|++...                       ....|...|++++|||||++||+|+. 
T Consensus         9 sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s~d   63 (357)
T 4g56_B            9 SGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAASSL   63 (357)
T ss_dssp             --------------------------------------------------------CCCSEEEEEEECSSSCEEEEEECS
T ss_pred             cCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEcCC
Confidence            3455566664  344455677788886532                       23579999999999999999999997 


Q ss_pred             -----CCeEEEEEccCCceeee-eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee----EeeccCc
Q 001258          441 -----RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEA  510 (1113)
Q Consensus       441 -----d~~i~iwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~  510 (1113)
                           |+.|++|+..++..... .....+|...|.+++|+|+++   +++++.|++|+|||+.+++...    ...+|..
T Consensus        64 ~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~  140 (357)
T 4g56_B           64 SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEHDD  140 (357)
T ss_dssp             SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCCSS
T ss_pred             CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCCCC
Confidence                 78899999887654321 123457999999999999986   6678889999999999887543    3457999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|.+++|++  ++.+|++|+.||.|++||+.+......+..|...|.+++|++++.                    ..++
T Consensus       141 ~V~~v~~sp--dg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~~~  198 (357)
T 4g56_B          141 IVKTLSVFS--DGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TIFL  198 (357)
T ss_dssp             CEEEEEECS--SSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SCEE
T ss_pred             CEEEEEECC--CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ceee
Confidence            999999865  558999999999999999999888888888888888888888764                    2488


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCC-CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1113)
                      +++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.           
T Consensus       199 s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~-----------  266 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA-----------  266 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC-----------
T ss_pred             eeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe-----------
Confidence            999999999999999988877766655667899999997 578999999999999998765 2111110           


Q ss_pred             CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258          670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  749 (1113)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  749 (1113)
                                                                                                      
T Consensus       267 --------------------------------------------------------------------------------  266 (357)
T 4g56_B          267 --------------------------------------------------------------------------------  266 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                                                                                        .|...|.+++|+|+
T Consensus       267 ------------------------------------------------------------------~~~~~v~~l~~sp~  280 (357)
T 4g56_B          267 ------------------------------------------------------------------VHSQNITGLAYSYH  280 (357)
T ss_dssp             ------------------------------------------------------------------CCSSCEEEEEECSS
T ss_pred             ------------------------------------------------------------------ccceeEEEEEEcCC
Confidence                                                                              15566778888887


Q ss_pred             C-CEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          830 D-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       830 ~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      + ++|++++ |++|+|||+.+++.++.+ +|...|++++|+|.++++|++|+.||.|++|++.+.
T Consensus       281 ~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          281 SSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            6 4678887 899999999988777655 699999999999877899999999999999999764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1e-37  Score=354.23  Aligned_cols=299  Identities=13%  Similarity=0.222  Sum_probs=244.6

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++...   .+.+|...|.+++|+|+++  ++++|+.|+.|++|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw  135 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF  135 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence            488999999999999999999999999999999999988665   7889999999999999999  79999999999999


Q ss_pred             eCCCCc-------eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-----eCCCCceEEEEEc
Q 001258          495 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS  562 (1113)
Q Consensus       495 d~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~v~~~~~s  562 (1113)
                      |+.+..       ....+.+|.+.|.++.|.+..+ ..|++|+.|++|++||+.++.....+     ..|...+.+++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSS-SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCC-CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            987532       3457889999999999876543 57999999999999999987766554     2344444444443


Q ss_pred             cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                      +                    ++++++++|+.|+.|++||++ .++.+..+..|  ...|.+++|+|++++|++++.||+
T Consensus       215 ~--------------------~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~  272 (380)
T 3iz6_a          215 S--------------------LNANMFISGSCDTTVRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGT  272 (380)
T ss_dssp             S--------------------SSCCEEEEEETTSCEEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSC
T ss_pred             c--------------------CCCCEEEEEECCCeEEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCe
Confidence            3                    145579999999999999997 45677777766  457999999999999999999999


Q ss_pred             EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258          642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  721 (1113)
Q Consensus       642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  721 (1113)
                      |++||+.++ ..+..+..+..                                                           
T Consensus       273 i~lwd~~~~-~~~~~~~~~~~-----------------------------------------------------------  292 (380)
T 3iz6_a          273 CRLFDMRTG-HQLQVYNREPD-----------------------------------------------------------  292 (380)
T ss_dssp             EEEEETTTT-EEEEEECCCCS-----------------------------------------------------------
T ss_pred             EEEEECCCC-cEEEEeccccc-----------------------------------------------------------
Confidence            999999876 22221110000                                                           


Q ss_pred             CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                                                               .                                      
T Consensus       293 -----------------------------------------~--------------------------------------  293 (380)
T 3iz6_a          293 -----------------------------------------R--------------------------------------  293 (380)
T ss_dssp             -----------------------------------------S--------------------------------------
T ss_pred             -----------------------------------------c--------------------------------------
Confidence                                                     0                                      


Q ss_pred             CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee----cCCCCCeeEEEEecCCCcEEE
Q 001258          802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNIIA  876 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~----~~~~~~i~~l~~s~~d~~~la  876 (1113)
                                  ...+...|.+++|+|+|++|++|+ ||.|++||+.+++....+    .+|...|.+++|+| ++++|+
T Consensus       294 ------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~  360 (380)
T 3iz6_a          294 ------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALC  360 (380)
T ss_dssp             ------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEE
T ss_pred             ------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEE
Confidence                        000334578899999999999998 899999999888877766    67999999999999 899999


Q ss_pred             EEecCCcEEEEEcccce
Q 001258          877 IGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       877 ~g~~dg~v~iwd~~~~~  893 (1113)
                      +|+.||.|+||++...+
T Consensus       361 sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          361 TGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EECTTSCEEEEECCSSS
T ss_pred             EeeCCCCEEEEecCCCc
Confidence            99999999999987643

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.1e-36  Score=334.21  Aligned_cols=289  Identities=19%  Similarity=0.260  Sum_probs=246.9

Q ss_pred             eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE
Q 001258          459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  538 (1113)
Q Consensus       459 ~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  538 (1113)
                      .++.+|.+.|.+++|+|+++  ++++++.|++|++||+.++.++..+.+|..+|.+++|+++  +++|++|+.|+.|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIAR--KNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGG--GTEEEEEETTSEEEEE
T ss_pred             EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCC--CCEEEEECCCCEEEEE
Confidence            47889999999999999999  8999999999999999999999999999999999998764  4799999999999999


Q ss_pred             EcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEEccCCC
Q 001258          539 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG  617 (1113)
Q Consensus       539 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  617 (1113)
                      |+.+++....+..|...|.+++|+|++.                     ++++|+.|++|++||+.++. ....+..|  
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------------~l~sgs~D~~v~lWd~~~~~~~~~~~~~h--  139 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKP---------------------YVLSGSDDLTVKLWNWENNWALEQTFEGH--  139 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSS---------------------EEEEEETTSCEEEEEGGGTTEEEEEECCC--
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCC---------------------EEEEECCCCeEEEEECCCCcchhhhhccc--
Confidence            9999888888888888888877777765                     79999999999999998874 44566655  


Q ss_pred             CCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccc
Q 001258          618 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  696 (1113)
Q Consensus       618 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1113)
                      ...|.+++|+| ++.+|++|+.|++|++||+.++.......                                       
T Consensus       140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~---------------------------------------  180 (304)
T 2ynn_A          140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT---------------------------------------  180 (304)
T ss_dssp             CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE---------------------------------------
T ss_pred             CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec---------------------------------------
Confidence            45799999999 68999999999999999986541100000                                       


Q ss_pred             cccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE
Q 001258          697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  776 (1113)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  776 (1113)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (304)
T 2ynn_A          181 --------------------------------------------------------------------------------  180 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec--CCCEEEEEe-CCeEEEEECCCCceee
Q 001258          777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA  853 (1113)
Q Consensus       777 vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~vwd~~~~~~~~  853 (1113)
                                                            .++...+..++++|  ++++|++++ |++|++||+.+++++.
T Consensus       181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~  222 (304)
T 2ynn_A          181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (304)
T ss_dssp             --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence                                                  00334455566654  677899998 8999999999999999


Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCC--EEEEEeCCCcEEEEeC
Q 001258          854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS  931 (1113)
Q Consensus       854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~L~s~s~D~~v~iwd~  931 (1113)
                      .+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++.  ++++++.|| +.+|++
T Consensus       223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            9999999999999999 889999999999999999999999999999999999999999875  577777666 888887


Q ss_pred             CC
Q 001258          932 DG  933 (1113)
Q Consensus       932 ~~  933 (1113)
                      ..
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            65

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-37  Score=355.35  Aligned_cols=360  Identities=11%  Similarity=0.147  Sum_probs=272.5

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEec----CCcce------eEeeeeeeeccCCCCcccccccccCCC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPG  420 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~  420 (1113)
                      ......|.+.|++++|+|+|+.+||+|+.||.|+|||+    .+++.      .......         ........+|.
T Consensus        38 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~  108 (425)
T 1r5m_A           38 ILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTT  108 (425)
T ss_dssp             ECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------C
T ss_pred             heeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCC
Confidence            34445578999999999999933999999999999999    88773      2210000         00001123478


Q ss_pred             cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  500 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  500 (1113)
                      +.|++++|+|++++|++|+.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++
T Consensus       109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~  182 (425)
T 1r5m_A          109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT  182 (425)
T ss_dssp             BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred             CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence            8999999999999999999999999999 4555444   6789999999999999999  79999999999999999999


Q ss_pred             eeeEeeccCcC---------------EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258          501 KQYIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1113)
Q Consensus       501 ~~~~~~~h~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  565 (1113)
                      .+..+..+...               +.+++|++.   ..+++++.||.|++||+.+......+..+...+.+++|+|++
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~  259 (425)
T 1r5m_A          183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN  259 (425)
T ss_dssp             EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred             EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence            99999888776               888888764   369999999999999999887777777777777777766666


Q ss_pred             CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                      +                     +|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++ ++++++.|+.|++|
T Consensus       260 ~---------------------~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~  315 (425)
T 1r5m_A          260 K---------------------LLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLW  315 (425)
T ss_dssp             T---------------------EEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEE
T ss_pred             C---------------------EEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEE
Confidence            5                     7999999999999999999988888765  4479999999999 99999999999999


Q ss_pred             EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258          646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  725 (1113)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  725 (1113)
                      |+.++ +.+..+.                                                                   
T Consensus       316 d~~~~-~~~~~~~-------------------------------------------------------------------  327 (425)
T 1r5m_A          316 SLKQN-TLLALSI-------------------------------------------------------------------  327 (425)
T ss_dssp             ETTTT-EEEEEEE-------------------------------------------------------------------
T ss_pred             ECCCC-cEeEecc-------------------------------------------------------------------
Confidence            98776 2222211                                                                   


Q ss_pred             eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258          726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  805 (1113)
Q Consensus       726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g  805 (1113)
                                             .|...|.+++|+|+++.+++++.||.|++|++.....                    
T Consensus       328 -----------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~--------------------  364 (425)
T 1r5m_A          328 -----------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS--------------------  364 (425)
T ss_dssp             -----------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------------
T ss_pred             -----------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc--------------------
Confidence                                   1456788889999999888888899999888753110                    


Q ss_pred             cccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEecCCc
Q 001258          806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSS  883 (1113)
Q Consensus       806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg~  883 (1113)
                        ..            ..+         ....++.   +.......+..+..|..  .|++++|+| ++++|++++.||.
T Consensus       365 --~~------------~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~  417 (425)
T 1r5m_A          365 --KS------------RSL---------YGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQE  417 (425)
T ss_dssp             ----------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSC
T ss_pred             --ce------------eee---------ecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCce
Confidence              00            000         0111222   22333456778888866  999999999 8999999999999


Q ss_pred             EEEEEcc
Q 001258          884 IQIYNVR  890 (1113)
Q Consensus       884 v~iwd~~  890 (1113)
                      |++||+.
T Consensus       418 i~iw~~~  424 (425)
T 1r5m_A          418 GSVVAIP  424 (425)
T ss_dssp             CEEEECC
T ss_pred             EEEEeec
Confidence            9999975

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.6e-36  Score=335.30  Aligned_cols=214  Identities=19%  Similarity=0.288  Sum_probs=183.9

Q ss_pred             cccCCCcceEEEEEcCCC-CeEEEEeCCCeEEEEEccCCce--eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258          415 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  491 (1113)
                      .+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+...  -.....+.+|...|.+++|+|+++  ++++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            588999999999999965 8999999999999999975332  123457889999999999999999  79999999999


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      ++||+.+++++..+.+|...|.+++|++  ++.+|++|+.|+.|++||++. .....+..|...+.++.+.|.+.     
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~-----  161 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK-----  161 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence            9999999999999999999999999865  457999999999999999964 55667777888888888887654     


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                ..+++..+++++.|+.|++||+.+++....+..|  ...|.+++|+|++++|++++.||.|++||+.++
T Consensus       162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH--NSNINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             --------------CCEEEEEETTSCEEEEETTTTEEEEEECCC--CSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                      1234557999999999999999999888888766  457999999999999999999999999998765

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-38  Score=366.56  Aligned_cols=332  Identities=13%  Similarity=0.188  Sum_probs=269.4

Q ss_pred             cceEEEEEcCCCC-eEEEE----------eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC
Q 001258          421 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  489 (1113)
Q Consensus       421 ~~V~~l~~spdg~-~las~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~  489 (1113)
                      ..|.+++|||+|+ +|++|          +.|+.|+|||+.+++.......+ .|...|.+++|+|+++  +|++++.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~--~l~~~~~dg   89 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNK--IIAGALDNG   89 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCC--eEEEEccCC
Confidence            3788999999997 99999          88999999999987643222233 6899999999999999  799999999


Q ss_pred             cEEEEeCCC----CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCC------Ceee---eeCCCCce
Q 001258          490 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVD---YEAPGRWC  556 (1113)
Q Consensus       490 ~i~iwd~~~----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~---~~~~~~~v  556 (1113)
                      .|++||+.+    .+.+..+.+|...|.+++|++.. +.+|++++.||.|++||+.+..      ....   ...+...+
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ-DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS-TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCCC-CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            999999987    45788899999999999987652 4699999999999999998865      2222   23344455


Q ss_pred             EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC----CCCcCeEEECCCC-C
Q 001258          557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-C  631 (1113)
Q Consensus       557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-~  631 (1113)
                      .+++|+|++                    +.++++++.|+.|++||+.+++.+..+..+..    ...|.+++|+|++ .
T Consensus       169 ~~~~~~~~~--------------------~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  228 (416)
T 2pm9_A          169 ISLAWNQSL--------------------AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST  228 (416)
T ss_dssp             CEEEECSSC--------------------TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTT
T ss_pred             eEEEeCCCC--------------------CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCC
Confidence            555555542                    35799999999999999999999888876531    4579999999997 6


Q ss_pred             EEEEEECCC---cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258          632 LLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  708 (1113)
Q Consensus       632 ~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1113)
                      ++++++.|+   .|++||+.++......+                                                   
T Consensus       229 ~l~~~~~d~~~~~i~~~d~~~~~~~~~~~---------------------------------------------------  257 (416)
T 2pm9_A          229 RVATATGSDNDPSILIWDLRNANTPLQTL---------------------------------------------------  257 (416)
T ss_dssp             EEEEEECCSSSCCCCEEETTSTTSCSBCC---------------------------------------------------
T ss_pred             EEEEEECCCCCceEEEEeCCCCCCCcEEe---------------------------------------------------
Confidence            999999998   99999987652111100                                                   


Q ss_pred             cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258          709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  788 (1113)
Q Consensus       709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  788 (1113)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (416)
T 2pm9_A          258 --------------------------------------------------------------------------------  257 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEE
Q 001258          789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA  866 (1113)
Q Consensus       789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~  866 (1113)
                                              . .+|...|.+++|+| ++++|++++ |++|++||+.+++.+..+..|...|.+++
T Consensus       258 ------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~  312 (416)
T 2pm9_A          258 ------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTK  312 (416)
T ss_dssp             ------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEE
T ss_pred             ------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEE
Confidence                                    0 01566778888888 888888888 89999999999999999999999999999


Q ss_pred             EecCCC-cEEEEEecCCcEEEEEcccceeeeeec-----------------------------------ccccCeEEEEE
Q 001258          867 FHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLAF  910 (1113)
Q Consensus       867 ~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~~  910 (1113)
                      |+| ++ .+|++++.||.|++||+.+++......                                   .|..++++++|
T Consensus       313 ~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (416)
T 2pm9_A          313 FAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW  391 (416)
T ss_dssp             ECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE
T ss_pred             ECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE
Confidence            999 66 899999999999999998765432221                                   16778889999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCC
Q 001258          911 SHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       911 s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      +|||++|++++.|++|+||++.+
T Consensus       392 s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          392 AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             eeCCeEEEEeCCCCeEEEEEecc
Confidence            99999999999999999999986

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=8.3e-37  Score=339.48  Aligned_cols=295  Identities=15%  Similarity=0.166  Sum_probs=231.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEec
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      +...|.+++|+|||+.|++++ |+++++|+...               .+|+..... ..........+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            567799999999999777666 77788886431               112111100 0000000111567899999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      ++. |++++ ||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+
T Consensus        93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            965 55666 99999999998876644    348999999999999 899999999999999999999999999999999


Q ss_pred             CeEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-CcEEEE-EcCCeEEEEeC
Q 001258          904 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHETQLAIFET  980 (1113)
Q Consensus       904 ~V~~l~~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~-~~d~~v~v~d~  980 (1113)
                      .|++++|++++ .+|++++.|++|++||+.+++.......   ..+.   ..+.+++|+|+ +.++++ +.|+.|++||+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------C---CCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---ceee---ccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            99999999988 4789999999999999998664321111   1111   35789999995 557777 58999999999


Q ss_pred             CccceeeccccCCCCCCeeEEEECCCC-CEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          981 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      ++++++..+.  +|...|++++|+||+ ++|++|+.|++|+|||+.++++. ++.       +|.+.|..  ++|+|++.
T Consensus       245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~-------~H~~~V~~--v~~sp~~~  312 (344)
T 4gqb_B          245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQ-------AHRDFVRD--ATWSPLNH  312 (344)
T ss_dssp             CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EEC-------CCSSCEEE--EEECSSST
T ss_pred             CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEc-------CCCCCEEE--EEEeCCCC
Confidence            9999988876  899999999999998 57999999999999999998865 334       89999885  89999666


Q ss_pred             CEEEEEeCCCcEEEEeccCCC
Q 001258         1060 NEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .+|++++.||+|++|++.+..
T Consensus       313 ~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          313 SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TEEEEEETTSCEEEEECCC--
T ss_pred             eEEEEEcCCCeEEEEECCCCC
Confidence            688999999999999998754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.6e-36  Score=338.51  Aligned_cols=289  Identities=14%  Similarity=0.186  Sum_probs=248.1

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|+||+++||+|+.||+|+|||..+++...   .+..|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence            478999999999999999999999999999999999887655   6778999999999999999  79999999999999


Q ss_pred             eCCCC------ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE
Q 001258          495 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       495 d~~~~------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      ++...      .....+.+|...|.+++|+++  +..|++++.|++|++||+.+++....+..|...|.+++++|+.   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~---  208 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNS--DMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE---  208 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSS--SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCC--CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence            98643      345678899999999998754  4789999999999999999988888888888878777776632   


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                                      ++++|++|+.||.|++||+++++++..+..|  ...|.+++|+|++++|++++.|++|++||+.
T Consensus       209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                            2347999999999999999999999988766  4579999999999999999999999999986


Q ss_pred             CCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceee
Q 001258          649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  728 (1113)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  728 (1113)
                      ++. ....+.                                                                      
T Consensus       271 ~~~-~~~~~~----------------------------------------------------------------------  279 (354)
T 2pbi_B          271 ADR-EVAIYS----------------------------------------------------------------------  279 (354)
T ss_dssp             TTE-EEEEEC----------------------------------------------------------------------
T ss_pred             CCc-EEEEEc----------------------------------------------------------------------
Confidence            541 110000                                                                      


Q ss_pred             EeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc
Q 001258          729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  808 (1113)
Q Consensus       729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~  808 (1113)
                                                                                                      
T Consensus       280 --------------------------------------------------------------------------------  279 (354)
T 2pbi_B          280 --------------------------------------------------------------------------------  279 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258          809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  887 (1113)
Q Consensus       809 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw  887 (1113)
                           ...+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|+||
T Consensus       280 -----~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          280 -----KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             -----CTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred             -----CCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence                 000233467888999999999998 89999999999999999999999999999999 89999999999999999


Q ss_pred             E
Q 001258          888 N  888 (1113)
Q Consensus       888 d  888 (1113)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=5.1e-37  Score=341.15  Aligned_cols=257  Identities=16%  Similarity=0.184  Sum_probs=201.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCC-cccccccccCCCcceEEEEEcCCCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS-MPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      |...|.+++|||||+ +|++++ |+++++||....         +|+..... ..........|...|.+++|+||+ .|
T Consensus        29 ~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l   96 (344)
T 4gqb_B           29 MERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLW---------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GI   96 (344)
T ss_dssp             CCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEE---------EESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EE
T ss_pred             ccCCEEEEEECCCCC-EEEEEe-CCceEEeeceee---------eeccccccCCcceeeeeeccCCCEEEEEEeCCC-eE
Confidence            667799999999999 477776 788999974211         11110000 000111233466789999999985 68


Q ss_pred             EEEeCCCeEEEEEccCCceeeee-eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      ++|+.||+|+|||+.+++.+... ..+.+|.+.|++|+|+|+|+  +|++|+.|++|++||+.+++++..+.+|.+.|.+
T Consensus        97 ~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~  174 (344)
T 4gqb_B           97 LVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTC  174 (344)
T ss_dssp             EEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred             EEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEE
Confidence            89999999999999998765432 34568999999999999999  7999999999999999999999999999999999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      ++|++... .++++++.|++|++||+++.+....+.  .+...+.+++|+|++.                    +++++|
T Consensus       175 ~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--------------------~~l~sg  233 (344)
T 4gqb_B          175 VAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQS--------------------EVFVFG  233 (344)
T ss_dssp             EEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCT--------------------TEEEEE
T ss_pred             EEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCC--------------------cceEEe
Confidence            99876543 488999999999999999887766543  2333455566555432                    468889


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEECCCcEEEEEcCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.||.|++||+++++++..+..|  ...|.+++|+|++ ++|++|+.|++|++||+.++
T Consensus       234 ~~dg~v~~wd~~~~~~~~~~~~h--~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~  290 (344)
T 4gqb_B          234 DENGTVSLVDTKSTSCVLSSAVH--SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS  290 (344)
T ss_dssp             ETTSEEEEEESCC--CCEEEECC--SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC
T ss_pred             ccCCcEEEEECCCCcEEEEEcCC--CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC
Confidence            99999999999999999999876  4579999999997 58999999999999998766

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-36  Score=351.91  Aligned_cols=355  Identities=14%  Similarity=0.143  Sum_probs=287.6

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +.+++++|+|+|++ |++|+.||.|++||+.+++...                   .+..| ..+....|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence            44568999999996 8999999999999998876542                   24445 455666889999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeee
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  518 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  518 (1113)
                      +.||.|++||+.+++...   .+.+|.+.|.+++|+|+++  +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999887654   5679999999999999999  79999999999999999999999999999999999987


Q ss_pred             ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          519 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       519 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +  ++.+|++++.||.|++||+++.+....+..   +...+.++++.+.+...........+..++|+|+++++++++.|
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence            6  457999999999999999998887777764   56689999999887766666667788899999999999999999


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  674 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1113)
                      |.|++||+.+++.+..+.. .+...|.+++|+|++. +|++++.||.|++||+.++...+..+..+              
T Consensus       269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--------------  333 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLIN--------------  333 (420)
T ss_dssp             SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEES--------------
T ss_pred             CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhcc--------------
Confidence            9999999999988877753 2345799999999998 99999999999999998763323222211              


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                                                                                                 +...|
T Consensus       334 ---------------------------------------------------------------------------~~~~v  338 (420)
T 3vl1_A          334 ---------------------------------------------------------------------------EGTPI  338 (420)
T ss_dssp             ---------------------------------------------------------------------------TTSCE
T ss_pred             ---------------------------------------------------------------------------CCCCc
Confidence                                                                                       34566


Q ss_pred             EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC---
Q 001258          755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS---  831 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~---  831 (1113)
                      .++.+ ++++.+++++.|+.+++|++........          +........    +.  .+...|.+++|+|+++   
T Consensus       339 ~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~----~~--~~~~~v~~~~~s~~~~~~g  401 (420)
T 3vl1_A          339 NNVYF-AAGALFVSSGFDTSIKLDIISDPESERP----------AIEFETPTF----LV--SNDDAVSQFCYVSDDESNG  401 (420)
T ss_dssp             EEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSC----------EECTTSCEE----EC--CSSCCCCEEEEECCSSSSC
T ss_pred             eEEEe-CCCCEEEEecCCccEEEEeccCCCCCcc----------ceeccCccE----Ec--cCCcceEEEEEccCCCCcc
Confidence            77744 5778899999999999999875321100          000111111    11  2788999999999999   


Q ss_pred             -EEEEEeCCeEEEEECCC
Q 001258          832 -YVMSASGGKISLFNMMT  848 (1113)
Q Consensus       832 -~l~~~sdg~i~vwd~~~  848 (1113)
                       ++++|++|.+.+|+++.
T Consensus       402 ~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          402 EVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EEEEEETTTEEEEEESCC
T ss_pred             eEEEEcCCceEEEEeccC
Confidence             66666699999999864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.8e-36  Score=334.89  Aligned_cols=216  Identities=20%  Similarity=0.308  Sum_probs=181.0

Q ss_pred             cccCCCcceEEEEE-----cC-CCCeEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEE
Q 001258          415 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  484 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s  484 (1113)
                      .+.+|.+.|++++|     ++ |+++|++|+.|++|+|||+.+++.    ......+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            58899999999999     77 999999999999999999976532    123446889999999999999999  7999


Q ss_pred             ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee---CCCCceEEEEE
Q 001258          485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAY  561 (1113)
Q Consensus       485 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~  561 (1113)
                      |+.|++|++||+.+++++..+.+|...|.+++|++  ++.+|++++.|+.|++||+.. .......   .+...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            99999999999999999999999999999999875  457999999999999999973 3232222   56677888888


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                      +|++...           ..+.|.+.++++++.|+.|++||. .++....+..|  ...|.+++|+|++++|++|+.||.
T Consensus       171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h--~~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH--ESNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECC--SSCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCc--cccceEEEECCCCCEEEEEcCCCe
Confidence            8876421           123456678999999999999994 55666666655  457999999999999999999999


Q ss_pred             EEEEEcCC
Q 001258          642 IKILATSD  649 (1113)
Q Consensus       642 i~iwd~~~  649 (1113)
                      |++||+.+
T Consensus       237 v~iwd~~~  244 (343)
T 2xzm_R          237 LLIWDILN  244 (343)
T ss_dssp             EEEEESSC
T ss_pred             EEEEECCC
Confidence            99999743

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.4e-35  Score=325.61  Aligned_cols=250  Identities=18%  Similarity=0.273  Sum_probs=213.6

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|++++|+|+|++ |++|+.||.|+||++.+++...                   .+.+|...|.+++|+|++
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~   77 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDS   77 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCC
Confidence            33459999999999999995 9999999999999999887665                   367899999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++|+.|++|++||+++++++..+..|...|
T Consensus        78 ~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  152 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPV  152 (312)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCE
T ss_pred             CEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcE
Confidence            999999999999999999988665   6889999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      .+++|++  ++.++++++.||.|++||+++......+.. +..                     .+..++|+|+++++++
T Consensus       153 ~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~  209 (312)
T 4ery_A          153 SAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP---------------------PVSFVKFSPNGKYILA  209 (312)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCC---------------------CEEEEEECTTSSEEEE
T ss_pred             EEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCC---------------------ceEEEEECCCCCEEEE
Confidence            9999865  557999999999999999988665544322 222                     3444555556668999


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCC
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++.|+.|++||+.+++.+..+..+..........++ +++.+|++|+.||.|++||+.++
T Consensus       210 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~  269 (312)
T 4ery_A          210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK  269 (312)
T ss_dssp             EETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred             EcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence            999999999999999999988776543333334444 67899999999999999999876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-37  Score=360.32  Aligned_cols=367  Identities=14%  Similarity=0.188  Sum_probs=269.6

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEE----------ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  425 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~g----------s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  425 (1113)
                      .+...|.+++|+|+|+.+|++|          +.|+.|+|||+.+++....                 .....|...|.+
T Consensus        10 ~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~   72 (416)
T 2pm9_A           10 AEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFND   72 (416)
T ss_dssp             CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEE
T ss_pred             hhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEE
Confidence            3456789999999998679999          8899999999998763210                 013468889999


Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEccCCce-eeeeeeeecccCCeeEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCc---
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA---  500 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~---  500 (1113)
                      ++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +.  +|++++.|+.|++||+.+++   
T Consensus        73 ~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           73 LDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESP  150 (416)
T ss_dssp             EEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCT
T ss_pred             EEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccc
Confidence            99999999999999999999999987211 1123368899999999999998 66  79999999999999999887   


Q ss_pred             ---eee---EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC------CCceEEEEEccCCCeE
Q 001258          501 ---KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGTRT  568 (1113)
Q Consensus       501 ---~~~---~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~~~~  568 (1113)
                         ...   .+.+|...|.+++|++.. +.++++++.||.|++||+++.+....+..+      ...+.+++|+|++.  
T Consensus       151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  227 (416)
T 2pm9_A          151 SNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS--  227 (416)
T ss_dssp             TTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT--
T ss_pred             ccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC--
Confidence               333   346799999999987652 369999999999999999987766666554      44555555555542  


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCC---cEEEEECCCC-ceEEEEc-cCCCCCCcCeEEECC-CCCEEEEEECCCcE
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGI  642 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  642 (1113)
                                        .++++++.|+   .|++||++++ ..+..+. .|  ...|.+++|+| ++++|++++.||.|
T Consensus       228 ------------------~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v  287 (416)
T 2pm9_A          228 ------------------TRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTV  287 (416)
T ss_dssp             ------------------TEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEE
T ss_pred             ------------------CEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCE
Confidence                              3688899998   9999999986 5555554 44  45799999999 99999999999999


Q ss_pred             EEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccC
Q 001258          643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  722 (1113)
Q Consensus       643 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  722 (1113)
                      ++||+.++ +.+..+.                                                                
T Consensus       288 ~~wd~~~~-~~~~~~~----------------------------------------------------------------  302 (416)
T 2pm9_A          288 LLWNPESA-EQLSQFP----------------------------------------------------------------  302 (416)
T ss_dssp             EEECSSSC-CEEEEEE----------------------------------------------------------------
T ss_pred             EEeeCCCC-ccceeec----------------------------------------------------------------
Confidence            99998876 3333221                                                                


Q ss_pred             CCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCC-ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          723 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       723 d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                                                .|...|.+++|+|++ ..+++++.|+.|++|++.....                
T Consensus       303 --------------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~----------------  340 (416)
T 2pm9_A          303 --------------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTN----------------  340 (416)
T ss_dssp             --------------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCC----------------
T ss_pred             --------------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCC----------------
Confidence                                      155678899999999 8899999999999998763111                


Q ss_pred             CCCccccccccCCCCCCC-----CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEE
Q 001258          802 PPSGIMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA  876 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~-----~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la  876 (1113)
                                ...  ...     ......+.+.+..++.+.  .+..+     .. .....+...+.+++|+| +|++||
T Consensus       341 ----------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~-~~~~~~~~~~~~~~~s~-dg~~la  399 (416)
T 2pm9_A          341 ----------TLD--EQETETKQQESETDFWNNVSREESKE--KPSVF-----HL-QAPTWYGEPSPAAHWAF-GGKLVQ  399 (416)
T ss_dssp             ----------SSC--C----------------------CCS--CCCSS-----CC-CCCSTTCCCSCCCEEET-TTEEEC
T ss_pred             ----------Ccc--cccccccccCCccccccccccccccc--ccccc-----cc-cCCccccCCccceEEee-CCeEEE
Confidence                      000  100     000111111221121111  01101     11 22234667788999999 999999


Q ss_pred             EEecCCcEEEEEcccc
Q 001258          877 IGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       877 ~g~~dg~v~iwd~~~~  892 (1113)
                      +|+.||.|+||++.+.
T Consensus       400 ~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          400 ITPDGKGVSITNPKIS  415 (416)
T ss_dssp             BCTTSSCBCCBCCCCC
T ss_pred             EeCCCCeEEEEEeccC
Confidence            9999999999998764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7.7e-36  Score=333.85  Aligned_cols=324  Identities=15%  Similarity=0.176  Sum_probs=263.8

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      |.+.|.+++|+|||+. ++++..++.+.+|+........                   ...+|.+.|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence            6678999999999995 7777777777676654433322                   2347999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeee--cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccCcCE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV  512 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v  512 (1113)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+.+|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            999 9999999999876554444444  7999999999999999  79999999999999999887  567788899999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .+++|++  ++.++++++.||.|++||+++.+....+..+...+.+++|+|++.                     +++++
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~---------------------~l~~~  201 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGT---------------------KLWTG  201 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------EEEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCC---------------------EEEEE
Confidence            9999875  457999999999999999998777777766766677666666654                     79999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      +.|+.|++||+.+++.+..+...   ..+.+++|+|+++++++++.++.|++|++.++. ... +               
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~-~---------------  261 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ-L---------------  261 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-E---------------
T ss_pred             ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-E---------------
Confidence            99999999999999888877533   468999999999999999999999999976541 000 0               


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (337)
T 1gxr_A          262 --------------------------------------------------------------------------------  261 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                                                                                    ..|...|.+++|+|++++
T Consensus       262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred             --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence                                                                          015556777778888888


Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                      |++++ ||.|++||+.+++.+.... |...+.+++|+| ++++|++++.||.|++|++.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~-~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEec-CCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence            88777 7888888888777664443 778899999999 89999999999999999963

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.5e-36  Score=334.98  Aligned_cols=300  Identities=16%  Similarity=0.211  Sum_probs=239.7

Q ss_pred             ccC-ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          750 RAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       750 ~~~-~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      |.. .|..++|+|+|+.|++++.|+.|++|++.....                      ........+|...|.+++|+|
T Consensus        14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~~~~h~~~v~~~~~sp   71 (345)
T 3fm0_A           14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVLSEGHQRTVRKVAWSP   71 (345)
T ss_dssp             STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEECSSCSSCEEEEEECT
T ss_pred             CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeeeccccCCcEEEEEECC
Confidence            666 899999999999999999999999999763211                      000000123899999999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---eeeeeecccc
Q 001258          829 NDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHS  902 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---~~~~~l~~h~  902 (1113)
                      ++++|++++ |++|++|++..+  +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++   +++..+.+|.
T Consensus        72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~  150 (345)
T 3fm0_A           72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT  150 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCC
T ss_pred             CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcC
Confidence            999999999 999999998866  45788999999999999999 8999999999999999999865   4567788999


Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT  981 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~  981 (1113)
                      ..|++++|+|++++|++++.|++|++||+.+++.   .+.....+|.   ..|.+++|+|+|++|++ +.|+.|++|+..
T Consensus       151 ~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~  224 (345)
T 3fm0_A          151 QDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQY  224 (345)
T ss_dssp             SCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence            9999999999999999999999999999877532   1223344554   37999999999999999 589999999963


Q ss_pred             cc---------------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeee--cCCCcccCCCcc
Q 001258          982 KL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR--INPSAYLPAGVS 1044 (1113)
Q Consensus       982 ~~---------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~--~~~~~~~~~gh~ 1044 (1113)
                      ..               +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+.....  +........+|.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~  303 (345)
T 3fm0_A          225 LPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHS  303 (345)
T ss_dssp             CTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSS
T ss_pred             cCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeeccccc
Confidence            32               2222222 24788999999999999999999999999999876532110  000011223788


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258         1045 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus      1045 ~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
                      ..|..  ++|+|+++.+|++|+.||+|++|++.+.+.
T Consensus       304 ~~V~~--v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~  338 (345)
T 3fm0_A          304 QDVNC--VAWNPKEPGLLASCSDDGEVAFWKYQRPEG  338 (345)
T ss_dssp             SCEEE--EEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred             CcEeE--eEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence            88884  999996557999999999999999998773

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.4e-35  Score=323.43  Aligned_cols=291  Identities=21%  Similarity=0.369  Sum_probs=245.8

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|+|+|++|++|+.||.|++|++.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw   92 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW   92 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence            578999999999999999999999999999999999987665   6789999999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |+.+++++..+.+|...|.+++|++  ++.+|++|+.||.|++||+++......+..+...+.+++|+|++.        
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------  162 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGS--------  162 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS--------
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCC--------
Confidence            9999999999999999999999876  457999999999999999998887777777777777777666665        


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                   ++++++.||.|++||+.+++.+..+.... ...+.+++|+|++++|++++.|+.|++||+.++ +.+
T Consensus       163 -------------~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~~~  227 (312)
T 4ery_A          163 -------------LIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG-KCL  227 (312)
T ss_dssp             -------------EEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEE
T ss_pred             -------------EEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEE
Confidence                         79999999999999999998887775432 346889999999999999999999999998776 332


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+.+|..                                                                        
T Consensus       228 ~~~~~~~~------------------------------------------------------------------------  235 (312)
T 4ery_A          228 KTYTGHKN------------------------------------------------------------------------  235 (312)
T ss_dssp             EEECSSCC------------------------------------------------------------------------
T ss_pred             EEEEecCC------------------------------------------------------------------------
Confidence            22211110                                                                        


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                      
T Consensus       236 --------------------------------------------------------------------------------  235 (312)
T 4ery_A          236 --------------------------------------------------------------------------------  235 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCCcEEEEEcc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  890 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~  890 (1113)
                        ....+......+++++|++|+ ||.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++  .|+.|++|+..
T Consensus       236 --~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          236 --EKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             --SSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEECC
T ss_pred             --ceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEecCC
Confidence              000111222235677888888 89999999999999999999999999999999 889999987  69999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.3e-35  Score=335.21  Aligned_cols=303  Identities=18%  Similarity=0.301  Sum_probs=232.3

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc------------------CCeeEEEEcCCCCe
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV------------------GGVNDIAFSHPNKQ  479 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~V~~v~~s~~~~~  479 (1113)
                      +|.+.|.+++|||||++||+|+ ++.++||++.+++.+.   .+..|.                  ..|.+++|+|+|+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6889999999988665   344332                  2499999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||++++                
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~----------------  197 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTG----------------  197 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTT----------------
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCC----------------
Confidence             799999999999999999999999999999999998765  4467888888888877777642                


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  638 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  638 (1113)
                                                                     +....+..+   ..+.+++|+| ++++|++++.
T Consensus       198 -----------------------------------------------~~~~~~~~~---~~v~~~~~~~~~~~~l~~~s~  227 (393)
T 1erj_A          198 -----------------------------------------------QCSLTLSIE---DGVTTVAVSPGDGKYIAAGSL  227 (393)
T ss_dssp             -----------------------------------------------EEEEEEECS---SCEEEEEECSTTCCEEEEEET
T ss_pred             -----------------------------------------------eeEEEEEcC---CCcEEEEEECCCCCEEEEEcC
Confidence                                                           222222211   2477899999 8999999999


Q ss_pred             CCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCccee
Q 001258          639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  718 (1113)
Q Consensus       639 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  718 (1113)
                      |+.|++||+.++ ..+..+.....                                                        
T Consensus       228 d~~v~iwd~~~~-~~~~~~~~~~~--------------------------------------------------------  250 (393)
T 1erj_A          228 DRAVRVWDSETG-FLVERLDSENE--------------------------------------------------------  250 (393)
T ss_dssp             TSCEEEEETTTC-CEEEEEC------------------------------------------------------------
T ss_pred             CCcEEEEECCCC-cEEEeeccccc--------------------------------------------------------
Confidence            999999998876 33222210000                                                        


Q ss_pred             eccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCe
Q 001258          719 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  798 (1113)
Q Consensus       719 ~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  798 (1113)
                                                 ...+|...|.+++|+|+++.|++++.|+.|++||+.....             
T Consensus       251 ---------------------------~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~-------------  290 (393)
T 1erj_A          251 ---------------------------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN-------------  290 (393)
T ss_dssp             -----------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------------
T ss_pred             ---------------------------CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC-------------
Confidence                                       0012667778888888888888888888888777642100             


Q ss_pred             ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEE
Q 001258          799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG  878 (1113)
Q Consensus       799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g  878 (1113)
                                            .....                   ....+.+...+.+|...|.+++|+| ++.+|++|
T Consensus       291 ----------------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sg  328 (393)
T 1erj_A          291 ----------------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSG  328 (393)
T ss_dssp             ---------------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEE
T ss_pred             ----------------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEE
Confidence                                  00000                   0012344556778999999999999 89999999


Q ss_pred             ecCCcEEEEEcccceeeeeecccccCeEEEEEcC------CCCEEEEEeCCCcEEEEeCCC
Q 001258          879 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       879 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      +.||.|++||+.+++.+..+.+|.+.|.+++|++      ++++|++|+.|++|++|++..
T Consensus       329 s~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          329 SKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            9999999999999999999999999999999986      688999999999999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.7e-35  Score=335.93  Aligned_cols=275  Identities=14%  Similarity=0.222  Sum_probs=206.4

Q ss_pred             ceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      ++...++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+....-..... .............+...|.+++|+
T Consensus        56 ~~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s  132 (393)
T 1erj_A           56 ELHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFS  132 (393)
T ss_dssp             EEEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred             eeEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEEC
Confidence            34566789999999999999995 88876 7899999999998765321100000 000000011122344569999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      |||++||+|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+.++++...+. +.
T Consensus       133 ~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~  206 (393)
T 1erj_A          133 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IE  206 (393)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CS
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cC
Confidence            999999999999999999999987665   6889999999999999999  79999999999999999999888776 66


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ..+.+++|++ .++.+|++|+.||.|++||++++.....+.....             .. ..+...+..++|+|++.+|
T Consensus       207 ~~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~-------------~~-~~h~~~v~~v~~~~~g~~l  271 (393)
T 1erj_A          207 DGVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-------------SG-TGHKDSVYSVVFTRDGQSV  271 (393)
T ss_dssp             SCEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC--------------------CCCSSCEEEEEECTTSSEE
T ss_pred             CCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeeccccc-------------CC-CCCCCCEEEEEECCCCCEE
Confidence            7899999875 2568999999999999999988665544421000             00 0112244555555666689


Q ss_pred             EEEecCCcEEEEECCCC------------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          590 LAAGDDFSIKFWDMDSV------------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++++.|+.|++||+.+.            .+...+..|  ...|.+++|+|++.+|++|+.|+.|++||..++
T Consensus       272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             EEEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999999763            234445444  457999999999999999999999999999877

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-37  Score=356.54  Aligned_cols=355  Identities=11%  Similarity=0.072  Sum_probs=235.2

Q ss_pred             CcceeEeccCCCCcEEEEEcCCC---------CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccC
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  418 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg---------~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (1113)
                      ..+...++.+.+.|++|+|+|++         + +||+|+.++..                                   
T Consensus       123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~-----------------------------------  166 (524)
T 2j04_B          123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD-----------------------------------  166 (524)
T ss_dssp             CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC--------------------------------------
T ss_pred             CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC-----------------------------------
Confidence            44555677789999999999997         5 58888755310                                   


Q ss_pred             CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee-eeeeeecccCCeeEEEEcCC------CCeeEEEEecCCCcE
Q 001258          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTI  491 (1113)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~~------~~~~~l~s~s~d~~i  491 (1113)
                             -..+|+++.||+++.|++|+|||+.+++... ...++.+|.+.|.+++|+|+      +.  +|++++.|++|
T Consensus       167 -------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtv  237 (524)
T 2j04_B          167 -------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTI  237 (524)
T ss_dssp             ----------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCE
T ss_pred             -------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeE
Confidence                   0136899999999999999999998876432 12346678899999999997      45  79999999999


Q ss_pred             EEEeCCCCce-----------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-eeeeeCCCCceEEE
Q 001258          492 KVWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTM  559 (1113)
Q Consensus       492 ~iwd~~~~~~-----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~  559 (1113)
                      +|||+.++..           ...+.+|...|.+++|++.   ..|++|+.||+|++||+++... ...+..|...|.++
T Consensus       238 rlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~---~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv  314 (524)
T 2j04_B          238 NFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP---TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSV  314 (524)
T ss_dssp             EEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS---SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEE
T ss_pred             EEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC---CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEE
Confidence            9999987642           3478899999999999753   3799999999999999987543 33566777777776


Q ss_pred             --EEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE
Q 001258          560 --AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  637 (1113)
Q Consensus       560 --~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  637 (1113)
                        ++++++.                    .+|++++.|++|++||++++++...+..+.....|.+++|+|+++.+++++
T Consensus       315 ~~~~s~~g~--------------------~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~  374 (524)
T 2j04_B          315 STAYSDFED--------------------TVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD  374 (524)
T ss_dssp             EEECCTTSC--------------------CEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC
T ss_pred             EEEcCCCCC--------------------eEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeC
Confidence              3455441                    368999999999999999888776665543323578999999999999999


Q ss_pred             CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcce
Q 001258          638 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  717 (1113)
Q Consensus       638 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  717 (1113)
                      .|++|++||+.++. ....+.                                                           
T Consensus       375 ~d~tv~lwd~~~~~-~~~~l~-----------------------------------------------------------  394 (524)
T 2j04_B          375 GASSLRAVPSRAAF-AVHPLV-----------------------------------------------------------  394 (524)
T ss_dssp             SSSEEEEEETTCTT-CCEEEE-----------------------------------------------------------
T ss_pred             CCCcEEEEECcccc-cceeee-----------------------------------------------------------
Confidence            99999999987651 111110                                                           


Q ss_pred             eeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecC
Q 001258          718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  797 (1113)
Q Consensus       718 ~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  797 (1113)
                                                     +                                                
T Consensus       395 -------------------------------g------------------------------------------------  395 (524)
T 2j04_B          395 -------------------------------S------------------------------------------------  395 (524)
T ss_dssp             -------------------------------E------------------------------------------------
T ss_pred             -------------------------------c------------------------------------------------
Confidence                                           1                                                


Q ss_pred             eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC-----CCCCeeEEEEecCC
Q 001258          798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQD  871 (1113)
Q Consensus       798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d  871 (1113)
                                         |...|.+++|+|+|++|++|+ |++|++||+... .+..+..     +...+.+++|+| +
T Consensus       396 -------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~  454 (524)
T 2j04_B          396 -------------------RETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSI-K  454 (524)
T ss_dssp             -------------------CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCS-S
T ss_pred             -------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCC-C
Confidence                               444455555555555555555 555555554332 1111110     112356788999 6


Q ss_pred             CcEEEEEecCCcEEEEEcc-cceeeeeecccccCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001258          872 NNIIAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       872 ~~~la~g~~dg~v~iwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~L~s~s~D~~v~iwd~~~  933 (1113)
                      +..+. ...  .+.+|+.. ++.++..+.+|...|++|+|+|++.   +||+|+.||+|+||++..
T Consensus       455 g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          455 DDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             SCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            66442 222  23344332 4677888999999999999999964   999999999999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.1e-35  Score=330.36  Aligned_cols=320  Identities=13%  Similarity=0.168  Sum_probs=258.1

Q ss_pred             CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      |.+.|.+++|||||++++++..++.+.+|.........   ...+|...|.+++|+|+++  ++++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence            45689999999999999998877777776554432222   3458999999999999999  788888 99999999988


Q ss_pred             Ccee---eEee--ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEEec
Q 001258          499 GAKQ---YIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       499 ~~~~---~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      +...   ..+.  +|...|.+++|++  ++.+|++++.||.|++||+.+...  ...+..+...+.+++|+|++      
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~------  153 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS------  153 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS------
T ss_pred             CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC------
Confidence            7643   3343  7999999999875  557999999999999999988663  33444555555555555554      


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                                     +++++++.||.|++||+.+++.+..+..+  ...+.+++|+|++++|++++.||.|++||+.++.
T Consensus       154 ---------------~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          154 ---------------KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             ---------------SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ---------------CEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence                           47999999999999999999998888765  4479999999999999999999999999986651


Q ss_pred             cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258          652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  731 (1113)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~  731 (1113)
                       ....+                                                                          
T Consensus       217 -~~~~~--------------------------------------------------------------------------  221 (337)
T 1gxr_A          217 -QLQQH--------------------------------------------------------------------------  221 (337)
T ss_dssp             -EEEEE--------------------------------------------------------------------------
T ss_pred             -eEeee--------------------------------------------------------------------------
Confidence             11000                                                                          


Q ss_pred             cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258          732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  811 (1113)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~  811 (1113)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       812 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                          .+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus       222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence                0334466777778888888777 78888888877654 45677889999999999 89999999999999999999


Q ss_pred             cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      +++.+.. ..|...|++++|+|++++|++++.|+.|++|++
T Consensus       296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9887744 458899999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.8e-34  Score=322.70  Aligned_cols=252  Identities=19%  Similarity=0.297  Sum_probs=200.2

Q ss_pred             eccCCCCcEEEEE-----cC-CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          354 TLNQGSSPMSMDF-----HP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       354 ~~~h~~~V~~~~~-----sp-dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      +.+|.+.|++++|     ++ +++ +|++|+.|++|+|||+.+++....            .......+.+|...|.+++
T Consensus        17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~   83 (343)
T 2xzm_R           17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA   83 (343)
T ss_dssp             EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred             eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence            3459999999999     77 888 599999999999999976542110            0001125789999999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-
Q 001258          428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-  506 (1113)
Q Consensus       428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-  506 (1113)
                      |+|++.+|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||+. +....... 
T Consensus        84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~~~~~~~  157 (343)
T 2xzm_R           84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GECKFSSAE  157 (343)
T ss_dssp             ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCEEEECCT
T ss_pred             ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCceeeeec
Confidence            99999999999999999999999988665   6889999999999999999  79999999999999987 44444433 


Q ss_pred             --ccCcCEEEEeeeecCC--------ceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          507 --GHEAPVYSVCPHHKEN--------IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       507 --~h~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                        +|...|.+++|++...        +.++++++.||.|++||.. ......+..|...|.+++|+|+|+          
T Consensus       158 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~----------  226 (343)
T 2xzm_R          158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGK----------  226 (343)
T ss_dssp             TTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSS----------
T ss_pred             ccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCC----------
Confidence              7899999999876532        2689999999999999943 344445556666666666666554          


Q ss_pred             eeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                 +|++++.|+.|++||+. .......+.. .  ..|.+++|+|++.+++++ .|+.|++|++.++
T Consensus       227 -----------~l~sgs~dg~v~iwd~~~~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~  286 (343)
T 2xzm_R          227 -----------YIATGGKDKKLLIWDILNLTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ  286 (343)
T ss_dssp             -----------EEEEEETTCEEEEEESSCCSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred             -----------EEEEEcCCCeEEEEECCCCcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence                       79999999999999994 4444444432 2  358999999999888755 5788999998776

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.3e-35  Score=341.18  Aligned_cols=346  Identities=12%  Similarity=0.099  Sum_probs=260.2

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  500 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  500 (1113)
                      ..+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence            345689999999999999999999999999876544   44455 4455668899999  79999999999999999999


Q ss_pred             eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      ....+.+|...|.+++|++  ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|+++              
T Consensus       131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~--------------  194 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGR--------------  194 (420)
T ss_dssp             EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTT--------------
T ss_pred             eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCC--------------
Confidence            9888899999999999876  457999999999999999999888888888887777777777665              


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC-CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                             +|++++.|+.|++||+.+++.+..+..+. +...+.+++|.+++...          ++.....  .      
T Consensus       195 -------~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~--~------  249 (420)
T 3vl1_A          195 -------NVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS--K------  249 (420)
T ss_dssp             -------EEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC--C------
T ss_pred             -------EEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC--c------
Confidence                   69999999999999999999998887542 23345555554432211          0000011  0      


Q ss_pred             ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258          660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  739 (1113)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~  739 (1113)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (420)
T 3vl1_A          250 --------------------------------------------------------------------------------  249 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258          740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  819 (1113)
Q Consensus       740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~  819 (1113)
                                    +.+++|+|+++.+++++.||.|++||+...                      ........  .|..
T Consensus       250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~----------------------~~~~~~~~--~~~~  291 (420)
T 3vl1_A          250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFSK----------------------EQTIQLPS--KFTC  291 (420)
T ss_dssp             --------------CCTTCSSCTTEEEEEEETTSCEEEEETTTC----------------------CEEEEECC--TTSS
T ss_pred             --------------ccceEEcCCCCEEEEEcCCCeEEEEECCCC----------------------ceeEEccc--ccCC
Confidence                          011223444455555555555555544321                      11110011  2677


Q ss_pred             CccEEEEecCCC-EEEEEe-CCeEEEEECCCCce-eeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc---
Q 001258          820 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---  892 (1113)
Q Consensus       820 ~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~---  892 (1113)
                      .|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+ + ++++|++++.||.|++|++...   
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence            889999999998 888888 89999999988754 666666 5666777755 5 6789999999999999998763   


Q ss_pred             ------eeeeeecccccCeEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001258          893 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       893 ------~~~~~l~~h~~~V~~l~~s~d~~---~L~s~s~D~~v~iwd~~~  933 (1113)
                            .....+.+|.+.|.+++|+|++.   .|++++.+|.+.+|+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                  22334667999999999999999   788888899999999865

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.2e-35  Score=324.19  Aligned_cols=252  Identities=17%  Similarity=0.244  Sum_probs=196.5

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccc-c-CCCcceEEEEEcCC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV-K-DPGVSVNRVIWSPD  431 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~V~~l~~spd  431 (1113)
                      +.+|.+.|++++|+|+   +||+|+.|++|+|||+.++......                 .+ . +|.+.|.+++|+|+
T Consensus        10 ~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~-----------------~~~~~~h~~~v~~v~~sp~   69 (330)
T 2hes_X           10 LKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLID-----------------VLDETAHKKAIRSVAWRPH   69 (330)
T ss_dssp             EECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEE-----------------EECTTCCCSCEEEEEECTT
T ss_pred             eccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEE-----------------EEecCCccCCEEEEEECCC
Confidence            3459999999999998   5999999999999999875321100                 12 3 49999999999999


Q ss_pred             CCeEEEEeCCCeEEEEEccCCc----eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC----Cceee
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAKQY  503 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~----~~~~~  503 (1113)
                      +++||+|+.|++|+|||+....    .......+.+|.+.|.+++|+|+++  +|++|+.|++|++||+..    .+++.
T Consensus        70 ~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           70 TSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             SSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            9999999999999999986432    1223446889999999999999999  899999999999999943    25677


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC--CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .+.+|...|.+++|+++  +.+|++++.|++|++||..+.  .....+..|...|.+++|+|++.               
T Consensus       148 ~~~~h~~~v~~v~~~p~--~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---------------  210 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPS--EALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG---------------  210 (330)
T ss_dssp             EECCCSSCEEEEEECSS--SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS---------------
T ss_pred             EeccCCCceEEEEECCC--CCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC---------------
Confidence            88999999999998764  579999999999999998765  34556667777777777777631               


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCC--------ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                          +.+|++++.|++|++||+..+        .+...+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus       211 ----~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          211 ----VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ----SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ----eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence                236899999999999998654        23333332 145679999999765 8999999999999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2e-34  Score=337.95  Aligned_cols=342  Identities=17%  Similarity=0.295  Sum_probs=265.1

Q ss_pred             cccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       415 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++++   ++++|+.|++|++
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v  187 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence            477888875 66666  67899999999999999999998665   688999999999999987   5999999999999


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-eEEecc
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF  572 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~  572 (1113)
                      ||+.+++++..+.+|...|.+++|++.+++.++++++.||.|++||+.+............ ...+...+++. ......
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence            9999999999999999999999999888889999999999999999987665433222111 11222223222 111112


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                      ......+.+++++++++++++.|+.|++||+.+++.+..+..+  ...|.+++|+|+++++++|+.||.|++||+.++ +
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~  343 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  343 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence            2223344556788899999999999999999999999988766  457999999999999999999999999998766 2


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      .+..+.                                                                          
T Consensus       344 ~~~~~~--------------------------------------------------------------------------  349 (464)
T 3v7d_B          344 LMYTLQ--------------------------------------------------------------------------  349 (464)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             EEEEEe--------------------------------------------------------------------------
Confidence            221111                                                                          


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                                                                                                      
T Consensus       350 --------------------------------------------------------------------------------  349 (464)
T 3v7d_B          350 --------------------------------------------------------------------------------  349 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                         +|...|.+++++  +++|++++ ||+|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus       350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred             ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence               145556666665  46777776 7888888887766655553 566788899999 899999998 89999999999


Q ss_pred             ceeeee-ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          892 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       892 ~~~~~~-l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      ++.+.. +.+|.+.|++++|+ ++.++++++.|+.+.+|-+
T Consensus       422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence            998875 67899999999997 4455556667776665543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.2e-34  Score=322.43  Aligned_cols=307  Identities=18%  Similarity=0.263  Sum_probs=249.8

Q ss_pred             eeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          351 VTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       351 ~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      +..+| +|.+.|++|+|+|++..+|+||+.||+|+|||+.+++.....              ....+.+|...|.+++|+
T Consensus        30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s   95 (340)
T 4aow_A           30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVIS   95 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEEC
T ss_pred             EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEEC
Confidence            34445 499999999999985446999999999999999876543211              112578999999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee-eEeecc
Q 001258          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGH  508 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~h  508 (1113)
                      |||++|++++.|+.|++|+...+....   ....+...+..+.+++++.  ++++++.|+.+++||+...... ..+.+|
T Consensus        96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~  170 (340)
T 4aow_A           96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH  170 (340)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred             CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence            999999999999999999999887554   5667888999999999999  7999999999999998766544 345679


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  588 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  588 (1113)
                      ...+..++|++.....++++++.|+.|++||+++......+..+...|.+++|+|+++                     +
T Consensus       171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~---------------------~  229 (340)
T 4aow_A          171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS---------------------L  229 (340)
T ss_dssp             SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------E
T ss_pred             cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC---------------------E
Confidence            9999999998887778899999999999999998887777777777777777777665                     7


Q ss_pred             EEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccC
Q 001258          589 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1113)
                      |++++.|+.|++||+.+.+.+..+..+   ..+.+++|+|++.+++ ++.|+.|++||+.++ ..+..+..+...     
T Consensus       230 l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~-----  299 (340)
T 4aow_A          230 CASGGKDGQAMLWDLNEGKHLYTLDGG---DIINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS-----  299 (340)
T ss_dssp             EEEEETTCEEEEEETTTTEEEEEEECS---SCEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC--------
T ss_pred             EEEEeCCCeEEEEEeccCceeeeecCC---ceEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee-----
Confidence            999999999999999999998888755   3589999999887654 556899999998876 333333211100     


Q ss_pred             CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258          669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  748 (1113)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  748 (1113)
                                                                                                  ....
T Consensus       300 ----------------------------------------------------------------------------~~~~  303 (340)
T 4aow_A          300 ----------------------------------------------------------------------------TSSK  303 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------------eecc
Confidence                                                                                        0002


Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEcccc
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  783 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  783 (1113)
                      .|...|.+++|+|+|++|++++.||.|+||++.++
T Consensus       304 ~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          304 AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence            37789999999999999999999999999998754

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-35  Score=342.58  Aligned_cols=373  Identities=11%  Similarity=0.145  Sum_probs=269.0

Q ss_pred             EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCe
Q 001258          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI  443 (1113)
Q Consensus       365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~  443 (1113)
                      .|+|+++. +++++      .|+. +++.+..                  +..+|.+.|++++|+| ++++||+|+.||+
T Consensus        34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            47888885 66544      4773 4555442                  2388999999999999 9999999999999


Q ss_pred             EEEEEccC---CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCceeeEeec----------
Q 001258          444 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG----------  507 (1113)
Q Consensus       444 i~iwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~~----------  507 (1113)
                      |+|||+.+   +........+ +|...|.+++|+|+++  +|++++.|++|++||+.   +++.+..+.+          
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~  164 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN  164 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred             EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence            99999987   5433222233 5999999999999999  79999999999999995   6666554443          


Q ss_pred             --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--CCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                        +...+.++.+...+++.++++++.||.|++||+++.+....+..  +...|.+++|+|++                  
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~------------------  226 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEEC------------------  226 (437)
T ss_dssp             GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTS------------------
T ss_pred             cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCC------------------
Confidence              34556666655667789999999999999999998877776665  45566666665555                  


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC----CCCCEEEEEECCCcEEEEEcCCCccceecccc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                         ++|++++.||.|++||+++++++..+.... ...|.+++|+    +++.+|++++.||.|++||+.++ +....+.+
T Consensus       227 ---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  301 (437)
T 3gre_A          227 ---CVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN  301 (437)
T ss_dssp             ---CEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred             ---CEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence               479999999999999999999988886322 3478999555    56889999999999999999888 55555544


Q ss_pred             ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258          660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  739 (1113)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~  739 (1113)
                      |...+                                                                           
T Consensus       302 ~~~~~---------------------------------------------------------------------------  306 (437)
T 3gre_A          302 SDEQP---------------------------------------------------------------------------  306 (437)
T ss_dssp             SSSCC---------------------------------------------------------------------------
T ss_pred             CCCCC---------------------------------------------------------------------------
Confidence            43211                                                                           


Q ss_pred             ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258          740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  819 (1113)
Q Consensus       740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~  819 (1113)
                                     ..+.|+|+++.+    .+.                                     .+.+..|..
T Consensus       307 ---------------~~~~~~~~~~~l----~~~-------------------------------------~~~~~~~~~  330 (437)
T 3gre_A          307 ---------------SMEHFLPIEKGL----EEL-------------------------------------NFCGIRSLN  330 (437)
T ss_dssp             ---------------CGGGGSCBCSSG----GGC-------------------------------------CCCCCCSGG
T ss_pred             ---------------ccceeccccccc----ccc-------------------------------------eecccccCC
Confidence                           111222222211    000                                     011112778


Q ss_pred             CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      .|.+++|+ ++++|++++ |+.|++||+.+++....+.+|..   .+....+++ ...+++..        |+.......
T Consensus       331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~  400 (437)
T 3gre_A          331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV  400 (437)
T ss_dssp             GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred             ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence            89999999 888999998 99999999999999988887643   355566666 44444433        333344455


Q ss_pred             eeecccccCeEEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001258          896 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d--~~~L~s~s~D~~v~iwd  930 (1113)
                      .....|.+.|++++|+++  +.+|++|+.||+|+||+
T Consensus       401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            666789999999999988  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.7e-34  Score=333.37  Aligned_cols=317  Identities=20%  Similarity=0.329  Sum_probs=267.9

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.|++|++|
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW  184 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence            46789887533 355579999999999999999999998765   788999999999998  45  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      |+.+++++..+.+|...|.+++|+  +  ..+++|+.||.|++||+.+++....+..+...+.++.+  ++         
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~--~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~---------  249 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DG---------  249 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CS---------
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec--C--CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CC---------
Confidence            999999999999999999999974  2  57999999999999999998888788777777777766  33         


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                  +++++++.||.|++||+.+++.+..+..+  ...|.+++|  ++.++++++.||.|++||+.++ +.+
T Consensus       250 ------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~  312 (445)
T 2ovr_B          250 ------------RRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI  312 (445)
T ss_dssp             ------------SCEEEEETTSCEEEEEGGGTEEEEEECCC--SSCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             ------------CEEEEEcCCCEEEEEECCCCcEeEEecCC--CCceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence                        36999999999999999999999888765  447888888  7899999999999999998766 221


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+.                                                                            
T Consensus       313 ~~~~----------------------------------------------------------------------------  316 (445)
T 2ovr_B          313 HTLT----------------------------------------------------------------------------  316 (445)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (445)
T 2ovr_B          317 --------------------------------------------------------------------------------  316 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                       +|...+.++.+  +++++++++ ||.|++||+.+++.+..+..   |...|++++|++   ++|++|+.||.|++||+.
T Consensus       317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETT
T ss_pred             -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECC
Confidence             03334444444  456888887 89999999999888888876   778899999964   699999999999999999


Q ss_pred             cceeeeee-----cccccCeEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001258          891 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  933 (1113)
Q Consensus       891 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~L~s~s~D~~----v~iwd~~~  933 (1113)
                      +++.+..+     .+|.+.|++++|+|++.+|++++.||+    |.+||++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99988888     578899999999999999999999998    99999976

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.8e-33  Score=362.23  Aligned_cols=518  Identities=14%  Similarity=0.082  Sum_probs=361.1

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +...+.+.+|||  ++ |+..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~--~~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DR-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEET--TE-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeC--CE-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            456789999996  44 555554 799999998876542                    667999999999999999999


Q ss_pred             EEeCC------CeEEEEEccCCceeeeeeeeecccCCe-------eEEEEcCCCCeeEEEEecCC------CcEEEEeCC
Q 001258          437 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT  497 (1113)
Q Consensus       437 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~  497 (1113)
                      +++.+      ..|.+||+.+++. +   .+..|...+       .+++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88643      4799999998863 2   577888888       9999999998  67777654      458888876


Q ss_pred             CCceee-------------------------------------------------EeeccCcCEEEEeeeecCCceEEEE
Q 001258          498 NGAKQY-------------------------------------------------IFEGHEAPVYSVCPHHKENIQFIFS  528 (1113)
Q Consensus       498 ~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~~~~~~l~s  528 (1113)
                      ++....                                                 .+.+|...+.++.|++  + .++++
T Consensus       143 ~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~  219 (1045)
T 1k32_A          143 GINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFI  219 (1045)
T ss_dssp             GTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEE
T ss_pred             CCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEE
Confidence            655321                                                 1233455555555543  2 45666


Q ss_pred             EecCCcEEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258          529 TALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  607 (1113)
Q Consensus       529 ~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  607 (1113)
                      ++.|+.+.+|.+.... ....+..+. .+.                     ..+|+|+|++++.+ .++.|++|++... 
T Consensus       220 ~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~---------------------~~~~SpDG~~la~~-~~~~i~~~d~~~~-  275 (1045)
T 1k32_A          220 TDIDGFGQIYSTDLDGKDLRKHTSFT-DYY---------------------PRHLNTDGRRILFS-KGGSIYIFNPDTE-  275 (1045)
T ss_dssp             ECTTSSCEEEEEETTSCSCEECCCCC-SSC---------------------EEEEEESSSCEEEE-ETTEEEEECTTTC-
T ss_pred             EeccCceEEEEEeCCCCcceEecCCC-Ccc---------------------eeeEcCCCCEEEEE-eCCEEEEecCCce-
Confidence            6677777777665322 222222221 122                     33555555567666 5899999999544 


Q ss_pred             eEEEEccCC---------CCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCccc
Q 001258          608 LLTSIDADG---------GLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  677 (1113)
Q Consensus       608 ~~~~~~~~~---------~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1113)
                      .+..+..+.         +...+.+++|+ |||+.|++++ ++.+.+|+..++. ... +.                   
T Consensus       276 ~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~-------------------  333 (1045)
T 1k32_A          276 KIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP-------------------  333 (1045)
T ss_dssp             CEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS-------------------
T ss_pred             EeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc-------------------
Confidence            343444321         12258899999 9999999888 7889999876551 111 10                   


Q ss_pred             chhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC-ceEE
Q 001258          678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISR  756 (1113)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~i~~  756 (1113)
                                                                                             .+.. .+..
T Consensus       334 -----------------------------------------------------------------------~~~~~~~~~  342 (1045)
T 1k32_A          334 -----------------------------------------------------------------------EPLRIRYVR  342 (1045)
T ss_dssp             -----------------------------------------------------------------------CCSCEEEEE
T ss_pred             -----------------------------------------------------------------------CCCcceEEe
Confidence                                                                                   0333 6788


Q ss_pred             EEEeCCCceEEEeecCCeEE-EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          757 LIFTNSGNAILALASNAIHL-LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~-vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      ++|+ ||+.++.++.++.+. +|++..                      +....  +.  ++...+.+++|+|||++|++
T Consensus       343 ~~~s-dg~~l~~~s~~~~l~~~~d~~~----------------------~~~~~--l~--~~~~~~~~~~~SpDG~~la~  395 (1045)
T 1k32_A          343 RGGD-TKVAFIHGTREGDFLGIYDYRT----------------------GKAEK--FE--ENLGNVFAMGVDRNGKFAVV  395 (1045)
T ss_dssp             ECSS-SEEEEEEEETTEEEEEEEETTT----------------------CCEEE--CC--CCCCSEEEEEECTTSSEEEE
T ss_pred             eeEc-CCCeEEEEECCCceEEEEECCC----------------------CCceE--ec--CCccceeeeEECCCCCEEEE
Confidence            8999 999999888877777 776542                      22211  11  26678999999999999999


Q ss_pred             Ee-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----------cEEEEEcccceeeeeecccccC
Q 001258          836 AS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       836 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----------~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                      ++ ++.|++||+.+++....+..|...+.+++||| ||++|++++.++          .|++||+.+++ +..+..|...
T Consensus       396 ~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~  473 (1045)
T 1k32_A          396 ANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH  473 (1045)
T ss_dssp             EETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB
T ss_pred             ECCCCeEEEEECCCCceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc
Confidence            88 78999999999988887778888899999999 899898887654          99999999887 6778889889


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE--EE-E-cCCeEEEEeC
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF--LV-V-HETQLAIFET  980 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l--~~-~-~d~~v~v~d~  980 (1113)
                      +.+++|+|||++|++++.++...+|+.......      ...+     ..+..+.+++++...  +. . .+.....|++
T Consensus       474 ~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  542 (1045)
T 1k32_A          474 DYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS------FEVV-----SKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL  542 (1045)
T ss_dssp             EEEEEECTTSCEEEEEESCCCCCEECSSSSCEE------CCSC-----BEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC
T ss_pred             cCCceEcCCCCEEEEEecccCCcCcchhccccc------cccC-----ceeEEEEeCCCCCCccccCcCccccccccccc
Confidence            999999999999999999999999987642210      0000     123444555544432  21 1 1111224555


Q ss_pred             CccceeeccccCCCCCCeeEEEECCCCCEEEE-------------EeCCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258          981 TKLECVKQWVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus       981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-------------~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
                      .... ........|...+..++++|||+++++             ...+..|++||+.+++.....           ..+
T Consensus       543 ~g~~-~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----------~~v  610 (1045)
T 1k32_A          543 NDMY-KRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----------NNL  610 (1045)
T ss_dssp             TTGG-GGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----------EEE
T ss_pred             cCHh-HceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----------cCc
Confidence            4321 111122256788999999999998875             123457888999888754221           223


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .  .++|+| ||++|++++.| .|++||+.+++
T Consensus       611 ~--~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          611 T--DLRLSA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E--EEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             c--eEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            3  478888 89999998866 89999998876

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4.6e-34  Score=319.87  Aligned_cols=211  Identities=19%  Similarity=0.294  Sum_probs=178.7

Q ss_pred             cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258          415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  491 (1113)
                      +|.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence            58899999999999997 689999999999999999876532  23447889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee-eeeCCCCceEEEEEccCCCeEEe
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      ++|+...+........+...+..+.+.+  ++.+|++++.|+.+++||+....... ....+...+..++|++++.    
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  184 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS----  184 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred             eEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence            9999999998888888888888888654  45789999999999999987643332 3344566677777766553    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                     ...+++++.|+.|++||+.+++.+..+..|  ...|.+++|+|++++|++++.||.|++||+.+.
T Consensus       185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                           235788999999999999999999888766  457999999999999999999999999998765

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.4e-33  Score=328.64  Aligned_cols=320  Identities=16%  Similarity=0.283  Sum_probs=265.0

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ...+|.+.|.. +++++|+ +|++|+.||+|++||+.+++.+.                   .+.+|.+.|.+++|+  +
T Consensus       113 ~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~  169 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--D  169 (445)
T ss_dssp             EEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--T
T ss_pred             EecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--C
Confidence            44568887643 3555688 49999999999999999998776                   377999999999997  6


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      ++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++++..+.+|...|
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v  242 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV  242 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence            799999999999999999998665   688999999999996  45  69999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .++++    ++.++++|+.||.|++||+++......+..+...+.++.+  ++                     .+++++
T Consensus       243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~---------------------~~l~~~  295 (445)
T 2ovr_B          243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DG---------------------IHVVSG  295 (445)
T ss_dssp             EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CS---------------------SEEEEE
T ss_pred             EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CC---------------------CEEEEE
Confidence            99987    4478999999999999999988777777777777777766  33                     369999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      +.|+.|++||+.+++.+..+..+.  ..+.++.+  +++++++++.||.|++||+.++ +.+..+.++            
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------  358 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGHQ--SLTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------  358 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCC--SCEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred             eCCCeEEEEECCCCCEEEEEcCCc--ccEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence            999999999999999999887663  35666665  5779999999999999998766 222211100            


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                                                                                    ..|...|.+++++  +++
T Consensus       359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred             --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence                                                                          0155667777774  568


Q ss_pred             EEEEe-CCeEEEEECCCCceeeee-----cCCCCCeeEEEEecCCCcEEEEEecCCc----EEEEEccc
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV  891 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~----v~iwd~~~  891 (1113)
                      |++++ ||.|++||+.+++.+..+     ..|...|.+++|+| ++.++|+|+.||.    |.|||+..
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence            88887 889999999988888777     46778899999999 8999999999998    99999874

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-34  Score=317.67  Aligned_cols=290  Identities=13%  Similarity=0.164  Sum_probs=224.5

Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      +|...|.+++|+++  .|++++.|+.|++|++.....                    .... .+....|...|.+++|+|
T Consensus        12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~sp   68 (330)
T 2hes_X           12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWRP   68 (330)
T ss_dssp             CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEECT
T ss_pred             cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEECC
Confidence            48899999999998  899999999999998763211                    0000 011113888999999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----ceeee
Q 001258          829 NDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKS  896 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~-------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~  896 (1113)
                      ++++|++++ |++|++||+..       .+.+..+.+|...|.+++|+| ++++||+|+.|+.|++||+..    .+++.
T Consensus        69 ~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~  147 (330)
T 2hes_X           69 HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECIS  147 (330)
T ss_dssp             TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEE
T ss_pred             CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEE
Confidence            999999999 99999999853       345677899999999999999 899999999999999999943    35678


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC--CcEEEE-EcCC
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHET  973 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd--g~~l~~-~~d~  973 (1113)
                      .+.+|...|++++|+|++.+|++++.|++|++||+.++..   .+.....+|.   ..|.+++|+|+  +.+|++ +.|+
T Consensus       148 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~---~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~  221 (330)
T 2hes_X          148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW---ECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDS  221 (330)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTS
T ss_pred             EeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe---eEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCC
Confidence            8999999999999999999999999999999999876421   2344455665   37999999999  678888 5899


Q ss_pred             eEEEEeCCcc--------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce--eeecCCCcccCCCc
Q 001258          974 QLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAGV 1043 (1113)
Q Consensus       974 ~v~v~d~~~~--------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~--~~~~~~~~~~~~gh 1043 (1113)
                      .|++||+.++        .+...+. ..|...|.+++|++++ +|++++.||+|+||+..+++.  ....      ..+|
T Consensus       222 ~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~------~~~h  293 (330)
T 2hes_X          222 TVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR------ALCH  293 (330)
T ss_dssp             CEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE------SCTT
T ss_pred             eEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc------cccc
Confidence            9999999765        2333332 3489999999999665 899999999999999987742  2221      1266


Q ss_pred             cc-CccceEEEEeCC-CCCEEEEEeCCCcEEEEeccC
Q 001258         1044 SS-NVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1044 ~~-~v~~i~~~~~p~-d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .. .|..  ++|+|. ++++|++|+.||+|++|++++
T Consensus       294 ~~~~v~~--v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          294 GVYEINV--VKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTSCEEE--EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             ccceEEE--EEEecCCCceEEEEecCCCcEEEEEecc
Confidence            65 6664  788885 678999999999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.3e-33  Score=328.95  Aligned_cols=319  Identities=15%  Similarity=0.243  Sum_probs=263.8

Q ss_pred             eEeccCCCCc-EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          352 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       352 ~~~~~h~~~V-~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+|.+.| .|+.|  +++ +|++|+.||+|++||+.+++.+.                   .+.+|.+.|.+++|+|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h~~~V~~l~~~~  172 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGHDGGVWALKYAH  172 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCCSSCEEEEEECS
T ss_pred             EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCCCcCEEEEEEcC
Confidence            3445688775 66666  556 59999999999999999998776                   3779999999999999


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCce-------
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------  501 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~-------  501 (1113)
                      ++ +|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++  ++.  ++++|+.|++|++||+.++..       
T Consensus       173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred             CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence            88 99999999999999999998665   6889999999999995  556  899999999999999987653       


Q ss_pred             ----------------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258          502 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1113)
Q Consensus       502 ----------------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  565 (1113)
                                      +..+.+|...|.++.  +  ++.++++++.||.|++||+.+.+....+..+...|.+++|+|++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~--~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G--HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEEc--C--CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                            456788999998875  3  34699999999999999999887777777777777777776666


Q ss_pred             CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                      .                     ++++++.||.|++||+.+++.+..+..|  ...|.+++|+  ++++++++.||.|++|
T Consensus       323 ~---------------------~l~sg~~dg~i~vwd~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          323 K---------------------RCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             T---------------------EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             C---------------------EEEEEeCCCcEEEEECCCCcEEEEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEE
Confidence            5                     7999999999999999999999998766  4478899997  5899999999999999


Q ss_pred             EcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCc
Q 001258          646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  725 (1113)
Q Consensus       646 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  725 (1113)
                      |+.++.....                                                                      
T Consensus       378 d~~~~~~~~~----------------------------------------------------------------------  387 (464)
T 3v7d_B          378 DANDYSRKFS----------------------------------------------------------------------  387 (464)
T ss_dssp             ETTTCCEEEE----------------------------------------------------------------------
T ss_pred             ECCCCceeee----------------------------------------------------------------------
Confidence            9865410000                                                                      


Q ss_pred             eeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCc
Q 001258          726 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  805 (1113)
Q Consensus       726 i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g  805 (1113)
                                                                 .                                    
T Consensus       388 -------------------------------------------~------------------------------------  388 (464)
T 3v7d_B          388 -------------------------------------------Y------------------------------------  388 (464)
T ss_dssp             -------------------------------------------E------------------------------------
T ss_pred             -------------------------------------------e------------------------------------
Confidence                                                       0                                    


Q ss_pred             cccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcE
Q 001258          806 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  884 (1113)
Q Consensus       806 ~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v  884 (1113)
                                .+...+..++++++++++++++||.|++||+.+++.+.. +..|...|.+++|+  +..++++++.||.+
T Consensus       389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS  456 (464)
T ss_dssp             ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred             ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence                      034456678899999999999999999999999999876 67788899999997  45677777888876


Q ss_pred             EEEE
Q 001258          885 QIYN  888 (1113)
Q Consensus       885 ~iwd  888 (1113)
                      .+|-
T Consensus       457 ~i~~  460 (464)
T 3v7d_B          457 FLEI  460 (464)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6653

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-35  Score=343.70  Aligned_cols=386  Identities=14%  Similarity=0.194  Sum_probs=282.0

Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeee-ecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCC---Cc-
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA-  500 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~---~~-  500 (1113)
                      .|+|+++.+++++      .|+. +++.+.   .+ .+|.+.|++++|+| +++  +|++|+.|++|+|||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~------~w~~-~g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNL-RGKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGC-CCCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc------cccc-cceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence            4788898888765      3774 344444   56 78999999999999 998  899999999999999877   44 


Q ss_pred             --eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC---CCCCeeeeeCCCCceEEEEEccCCCeEEeccccC
Q 001258          501 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  575 (1113)
Q Consensus       501 --~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  575 (1113)
                        ....+ +|...|.+++|++  ++.+|++++.||.|++||+.   ++........+  .+..+.+++++       ...
T Consensus       102 ~~~~~~~-~h~~~v~~~~~~~--~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~  169 (437)
T 3gre_A          102 YSSSLTY-DCSSTVTQITMIP--NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE  169 (437)
T ss_dssp             CSCSEEE-ECSSCEEEEEECT--TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred             cceeeec-cCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence              23333 4999999999875  55799999999999999995   44444444333  67777777743       122


Q ss_pred             ceeEEE--ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          576 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       576 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                      .+..+.  +++++.++++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+.++ +.
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~  248 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL  248 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence            444555  668899999999999999999999999999987434568999999999999999999999999998765 22


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      +..+.                                                                        +  
T Consensus       249 ~~~~~------------------------------------------------------------------------~--  254 (437)
T 3gre_A          249 IRSWS------------------------------------------------------------------------F--  254 (437)
T ss_dssp             EEEEB------------------------------------------------------------------------C--
T ss_pred             EEEEe------------------------------------------------------------------------c--
Confidence            22110                                                                        0  


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                     .+...|.+++++|                                                    
T Consensus       255 ---------------~~~~~v~~~~~~~----------------------------------------------------  267 (437)
T 3gre_A          255 ---------------GDHAPITHVEVCQ----------------------------------------------------  267 (437)
T ss_dssp             ---------------TTCEEEEEEEECT----------------------------------------------------
T ss_pred             ---------------CCCCceEEEEecc----------------------------------------------------
Confidence                           0222333333222                                                    


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                                 +|++++++|++++ ||.|++||+.+++++..+.+|...+..+.|+| +++.+    .+.          
T Consensus       268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~----------  321 (437)
T 3gre_A          268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL----------  321 (437)
T ss_dssp             -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred             -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence                       2335677888888 89999999999999999999999999999999 55544    111          


Q ss_pred             eeeeeecc--cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          893 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       893 ~~~~~l~~--h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                          .+.+  |...|++++|+ ++++|++++.|+.|++||+.+++..     ....++...........++++..+++..
T Consensus       322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (437)
T 3gre_A          322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS-----KAVISPSRFSDVFIPTQVTANLTMLLRK  391 (437)
T ss_dssp             ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC-----EEEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred             ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc-----eEEecccccCceEEEEEeecceEEEEEe
Confidence                1444  99999999999 8899999999999999999986543     2223332222344556666666555443


Q ss_pred             cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCC--CCEEEEEeCCCcEEEEe
Q 001258          971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1023 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~Dg~v~vwd 1023 (1113)
                             |+..........  ..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                   223333333332  268999999999998  88999999999999995

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-33  Score=319.38  Aligned_cols=302  Identities=16%  Similarity=0.247  Sum_probs=253.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++|+|+|++|++|+.||.|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence            588999999999999999999999999999999999988665   7889999999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC-----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      |+.+++++..+. |...|.+++|++  ++.++++++.+     |.|++||+........+                    
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------------------  158 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHEL--------------------  158 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence            999999999888 889999999875  45799999988     99999998754322111                    


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                                          ..            .....+..+..+.+...+.+++|+|++++|++++.||.|++||+.+
T Consensus       159 --------------------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          159 --------------------TK------------VSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             --------------------EE------------ECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             --------------------cc------------cccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence                                00            0112222333333334689999999999999999999999999865


Q ss_pred             CccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeE
Q 001258          650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  729 (1113)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  729 (1113)
                      +......+.                                                                       
T Consensus       207 ~~~~~~~~~-----------------------------------------------------------------------  215 (369)
T 3zwl_B          207 NYEYVDSID-----------------------------------------------------------------------  215 (369)
T ss_dssp             TTEEEEEEE-----------------------------------------------------------------------
T ss_pred             CcEeEEEEe-----------------------------------------------------------------------
Confidence            311111100                                                                       


Q ss_pred             eccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccc
Q 001258          730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  809 (1113)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~  809 (1113)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (369)
T 3zwl_B          216 --------------------------------------------------------------------------------  215 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC------
Q 001258          810 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  882 (1113)
Q Consensus       810 ~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg------  882 (1113)
                            .|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++      
T Consensus       216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred             ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence                  1556678888888888888887 8899999999888888877 677899999999 899999999888      


Q ss_pred             --------cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258          883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  935 (1113)
Q Consensus       883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~  935 (1113)
                              .+++||+.+++.+..+.+|...|++++|+|++++|++++.|++|++|+++.+.
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                    89999999999999999999999999999999999999999999999998743

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=7e-34  Score=350.39  Aligned_cols=259  Identities=21%  Similarity=0.302  Sum_probs=216.3

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      ..+|.+.|++++|+|++..+|++|+.||+|+|||+.++.....              .....+.+|...|.+++|+|+|+
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence            3459999999999998765799999999999999976542210              01114789999999999999999


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---eccCc
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA  510 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---~~h~~  510 (1113)
                      +|++|+.|++|+|||+.++....   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.........   .+|..
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD  518 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred             EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence            99999999999999999988665   6889999999999999999  7999999999999997654433322   46889


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|.+++|++......+++++.|+.|++||+++......+..|...|.+++|+|+++                     +|+
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~---------------------~l~  577 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS---------------------LCA  577 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSS---------------------EEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCC---------------------EEE
Confidence            99999998876556899999999999999998877777777777777777777665                     799


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +++.||.|++||+.+++.+..+..+   ..|.+++|+|++.++++++. +.|++||+.++ ..+..+
T Consensus       578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~-~~~~~~  639 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAATE-HGIKIWDLESK-SIVEDL  639 (694)
T ss_dssp             EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEET-TEEEEEETTTT-EEEEEE
T ss_pred             EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCC-CChhhh
Confidence            9999999999999999888776543   35899999999998887765 66999999887 454444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6e-35  Score=340.69  Aligned_cols=244  Identities=9%  Similarity=0.092  Sum_probs=183.5

Q ss_pred             EcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC------CCeEEEEe
Q 001258          366 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD------GSLFGVAY  439 (1113)
Q Consensus       366 ~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd------g~~las~~  439 (1113)
                      .+|+++ ++++|+.|++|+|||+.+++.....               ...+.+|.+.|.+++|+|+      +.+||+++
T Consensus       169 ~~~~~~-~laS~s~D~tI~iWd~~~~~~~~~~---------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s  232 (524)
T 2j04_B          169 LNEHLE-MFDKEKHSSCIQIFKMNTSTLHCVK---------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS  232 (524)
T ss_dssp             --------------CEEEEEEEEETTTCCEEE---------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE
T ss_pred             cchhhh-hhccCCCCceEEEEEccCCCCCceE---------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEe
Confidence            589999 5899999999999999887643210               0125678889999999997      57999999


Q ss_pred             CCCeEEEEEccCCcee--------eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc-eeeEeeccCc
Q 001258          440 SRHIVQIYSYHGGDEV--------RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA  510 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~--------~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~h~~  510 (1113)
                      .||+|+|||+.++...        .+..++.+|...|++++|++++   .|++|+.||+|++||+.++. +...+.+|..
T Consensus       233 ~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~  309 (524)
T 2j04_B          233 QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS  309 (524)
T ss_dssp             TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSS
T ss_pred             cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccc
Confidence            9999999999876422        1223678999999999999864   59999999999999999874 4567899999


Q ss_pred             CEEEEeeeecCCc-eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          511 PVYSVCPHHKENI-QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       511 ~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      .|.++++...+++ .+|+||+.|++|++||+++......+..+...                   ..+..++|+|++..+
T Consensus       310 ~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~-------------------~~v~~v~fsp~~~~l  370 (524)
T 2j04_B          310 YILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG-------------------SNLVPVVYCPQIYSY  370 (524)
T ss_dssp             CEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC-------------------CSCCCEEEETTTTEE
T ss_pred             cEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc-------------------CcccceEeCCCcCeE
Confidence            9999954445565 79999999999999999876554443332210                   123345555555579


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                      ++++.|++|++||++++.++..+..|  ...|.+++|+|++++|++|+.||+|++||+..
T Consensus       371 ~s~~~d~tv~lwd~~~~~~~~~l~gH--~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          371 IYSDGASSLRAVPSRAAFAVHPLVSR--ETTITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             EEECSSSEEEEEETTCTTCCEEEEEC--SSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             EEeCCCCcEEEEECcccccceeeecC--CCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            99999999999999999988888765  55899999999999999999999999998643

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-34  Score=327.23  Aligned_cols=318  Identities=14%  Similarity=0.195  Sum_probs=219.2

Q ss_pred             cccCCCcceEEEEEcCC----CCeEEEEeCCCeEEEEEccCCceeeeeeeee--cccCCeeEEEEcCC----CCeeEEEE
Q 001258          415 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT  484 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~~----~~~~~l~s  484 (1113)
                      +..+|.+.|++++|+|+    ...+++++.++.|+|||+.+++.+.....+.  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            56799999999999984    4566666667799999999888766443333  26788999999999    55  7999


Q ss_pred             ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEE
Q 001258          485 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY  561 (1113)
Q Consensus       485 ~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~  561 (1113)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+   ..+...      
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  163 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------  163 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence            999999999999999999999999999999998762 4479999999999999999875544433   223333      


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCc
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  641 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  641 (1113)
                                                                                 |.+++|+|++++|++++.||.
T Consensus       164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred             -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence                                                                       344445555555555555555


Q ss_pred             EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeecc
Q 001258          642 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  721 (1113)
Q Consensus       642 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  721 (1113)
                      |++||+.++ +....+....            .+.+.+                                   ..+....
T Consensus       185 i~i~d~~~~-~~~~~~~~~~------------~~~~~~-----------------------------------~~~~~~~  216 (366)
T 3k26_A          185 LKLWRINSK-RMMNAIKESY------------DYNPNK-----------------------------------TNRPFIS  216 (366)
T ss_dssp             EEEEESCSH-HHHHHHHHHH------------TCCGGG-----------------------------------CSSCCCC
T ss_pred             EEEEECCCC-ccccccceeE------------EecCCC-----------------------------------Ccccccc
Confidence            555554443 1111111100            000000                                   0000000


Q ss_pred             CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                      .......+..                                                                      
T Consensus       217 ~~~~~~~~~~----------------------------------------------------------------------  226 (366)
T 3k26_A          217 QKIHFPDFST----------------------------------------------------------------------  226 (366)
T ss_dssp             EEECCCSEEE----------------------------------------------------------------------
T ss_pred             eeeccCcccc----------------------------------------------------------------------
Confidence            0000000000                                                                      


Q ss_pred             CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCce--------------eeeecCCCCCeeEEE
Q 001258          802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA  866 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~--------------~~~~~~~~~~i~~l~  866 (1113)
                                .  ..|...|.+++|+  ++++++++ |+.|++||+.++..              +..+..|...|.+++
T Consensus       227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (366)
T 3k26_A          227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR  292 (366)
T ss_dssp             ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred             ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence                      0  0145555566665  44555555 56666666554432              566778888999999


Q ss_pred             EecCC--CcEEEEEecCCcEEEEEccccee----eeeeccc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          867 FHPQD--NNIIAIGMDDSSIQIYNVRVDEV----KSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       867 ~s~~d--~~~la~g~~dg~v~iwd~~~~~~----~~~l~~h--~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      |+| +  +++|++|+.||.|++||+.+++.    ...+.+|  ...|++++|+|++++|++++.||.|++||+.+
T Consensus       293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            999 7  99999999999999999998754    3477887  79999999999999999999999999999853

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=2.2e-33  Score=323.18  Aligned_cols=357  Identities=14%  Similarity=0.157  Sum_probs=249.4

Q ss_pred             cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEEeCCCeEEEEEccCCceeee
Q 001258          379 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQ  457 (1113)
Q Consensus       379 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~  457 (1113)
                      .++.+++|++..++...                   .+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....
T Consensus        21 ~~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~   81 (408)
T 4a11_B           21 AESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY   81 (408)
T ss_dssp             HHHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC
T ss_pred             ccCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce
Confidence            34567778877665544                   4788999999999999 999999999999999999998875542


Q ss_pred             eeee----------ecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecC-CceE
Q 001258          458 HLEI----------DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQF  525 (1113)
Q Consensus       458 ~~~l----------~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~  525 (1113)
                      ....          .+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+. +...+.++++.+.. ++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  158 (408)
T 4a11_B           82 YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCL  158 (408)
T ss_dssp             EEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCE
T ss_pred             EeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcE
Confidence            2111          25999999999999 555  79999999999999999999888887 77889999887643 4569


Q ss_pred             EEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC
Q 001258          526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS  605 (1113)
Q Consensus       526 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~  605 (1113)
                      +++++.||.|++||+.+......+..+...|.+++|+|++..                    .+++++.||.|++||+++
T Consensus       159 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------ll~~~~~dg~i~i~d~~~  218 (408)
T 4a11_B          159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDY--------------------ILATASADSRVKLWDVRR  218 (408)
T ss_dssp             EEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTT--------------------EEEEEETTSCEEEEETTC
T ss_pred             EEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCc--------------------EEEEEcCCCcEEEEECCC
Confidence            999999999999999998888888878887888877777651                    388999999999999987


Q ss_pred             Cc-eEEEEcc-------------CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCC
Q 001258          606 VQ-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  671 (1113)
Q Consensus       606 ~~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1113)
                      +. .+..+..             ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....       
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~-------  290 (408)
T 4a11_B          219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN-------  290 (408)
T ss_dssp             SSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC-------
T ss_pred             CCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc-------
Confidence            65 4444421             23445789999999999999999999999999987732 11111000000       


Q ss_pred             CCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccccc
Q 001258          672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  751 (1113)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~  751 (1113)
                                                                                                    . 
T Consensus       291 ------------------------------------------------------------------------------~-  291 (408)
T 4a11_B          291 ------------------------------------------------------------------------------S-  291 (408)
T ss_dssp             ------------------------------------------------------------------------------C-
T ss_pred             ------------------------------------------------------------------------------c-
Confidence                                                                                          0 


Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                                                                                       .............+.
T Consensus       292 -----------------------------------------------------------------~~~~~~~~~~~~~~~  306 (408)
T 4a11_B          292 -----------------------------------------------------------------KKGLKFTVSCGCSSE  306 (408)
T ss_dssp             -----------------------------------------------------------------SSCCCCEECCSSSSC
T ss_pred             -----------------------------------------------------------------cccceeEEecCCCce
Confidence                                                                             000011111223444


Q ss_pred             EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEc
Q 001258          832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  911 (1113)
Q Consensus       832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  911 (1113)
                      +++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+...   ..+.
T Consensus       307 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~  382 (408)
T 4a11_B          307 FVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN  382 (408)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC--------------------
T ss_pred             EEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc
Confidence            55555699999999999999999999999999999999 8999999999999999999998877655443322   2233


Q ss_pred             C-CCCEEEEEeCCCcEEEEeCCC
Q 001258          912 H-ALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       912 ~-d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      + +...+.+.+.|+.+++|+...
T Consensus       383 ~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          383 PAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -----------------------
T ss_pred             cccceeecccCccCceeecCCcc
Confidence            2 334556777899999998654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.4e-33  Score=326.82  Aligned_cols=241  Identities=15%  Similarity=0.243  Sum_probs=190.7

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCC
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  433 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  433 (1113)
                      ..|...|+||+|+|....+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++|+|+| ++.
T Consensus       116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~~  178 (435)
T 4e54_B          116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNTN  178 (435)
T ss_dssp             EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCTT
T ss_pred             CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCCC
Confidence            4589999999999965547999999999999999887654321                 3578999999999998 789


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEE
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  513 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~  513 (1113)
                      +|++|+.||+|+|||++++.. ........+...+.+++|+|+++  +|++|+.||+|++||+. ++.+..+.+|...|.
T Consensus       179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~  254 (435)
T 4e54_B          179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVT  254 (435)
T ss_dssp             EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEE
T ss_pred             EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEE
Confidence            999999999999999987643 32223334555789999999999  89999999999999975 567788999999999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      +++|++..+ .++++++.|+.|++||+++......+   ..|...|.+++|+|+|                     ++|+
T Consensus       255 ~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg---------------------~~l~  312 (435)
T 4e54_B          255 HVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG---------------------ARLL  312 (435)
T ss_dssp             EEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------------------SEEE
T ss_pred             eeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC---------------------CeeE
Confidence            999987543 58899999999999999876544322   3445555555555554                     4799


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCC----CCcCeEEECCCCCEEEEEEC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~~  638 (1113)
                      +++.||.|++||+.++.....+..+...    ..+..+.|+|++.+++++..
T Consensus       313 s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (435)
T 4e54_B          313 TTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRY  364 (435)
T ss_dssp             EEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECC
T ss_pred             EEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEc
Confidence            9999999999999999888777655321    12446788888888777643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=7.9e-33  Score=317.31  Aligned_cols=295  Identities=15%  Similarity=0.191  Sum_probs=242.0

Q ss_pred             eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc------eeeEeeccCcCEEEEeeeec--CCc---eEE
Q 001258          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QFI  526 (1113)
Q Consensus       458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~------~~~~~~~h~~~v~~~~~~~~--~~~---~~l  526 (1113)
                      ...+.+|.+.|++++|+|  +  +|++|+.|++|++||+.+++      .+..+.+|...|.+++|++.  .++   .+|
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l   84 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   84 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence            346789999999999998  4  79999999999999999988      78899999999999998865  236   799


Q ss_pred             EEEecCCcEEEEEcCCCCC-----eeeeeCC-----CCceEEEEEccCCCeEEeccccCceeEEEec----CCCCE-EEE
Q 001258          527 FSTALDGKIKAWLYDNLGS-----RVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLA  591 (1113)
Q Consensus       527 ~s~~~dg~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~----~~~~~-l~~  591 (1113)
                      ++++.||.|++||+.+...     ...+..+     ...|.+                     ++|+    |++++ |++
T Consensus        85 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---------------------~~~~~~~~~~~~~~l~~  143 (397)
T 1sq9_A           85 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA---------------------LKWGASNDRLLSHRLVA  143 (397)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEE---------------------EEEECCC----CEEEEE
T ss_pred             EEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEE---------------------EEEeeccCCCCceEEEE
Confidence            9999999999999988765     5555444     244444                     4555    55568 999


Q ss_pred             EecCCcEEEEECCC------CceEE-----EEcc-----CCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258          592 AGDDFSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                      ++.||.|++||+.+      ++.+.     .+..     ..+...|.+++|+|++ ++++++.||.|++||+.++ +.+.
T Consensus       144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~  221 (397)
T 1sq9_A          144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLY  221 (397)
T ss_dssp             EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEE
T ss_pred             EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeE
Confidence            99999999999988      66665     6643     3345679999999999 9999999999999998765 2211


Q ss_pred             ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258          656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  735 (1113)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~  735 (1113)
                      .+..                                                                            
T Consensus       222 ~~~~----------------------------------------------------------------------------  225 (397)
T 1sq9_A          222 NFES----------------------------------------------------------------------------  225 (397)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEec----------------------------------------------------------------------------
Confidence            1100                                                                            


Q ss_pred             CCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258          736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  815 (1113)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~  815 (1113)
                                                                                                  .  .
T Consensus       226 ----------------------------------------------------------------------------~--~  227 (397)
T 1sq9_A          226 ----------------------------------------------------------------------------Q--H  227 (397)
T ss_dssp             ----------------------------------------------------------------------------C--C
T ss_pred             ----------------------------------------------------------------------------c--c
Confidence                                                                                        0  0


Q ss_pred             CC---CCCccEEEEecCCCEEEEEe-C---CeEEEEECCCCceeeeecC-------------CCCCeeEEEEecCCCcEE
Q 001258          816 NP---EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNII  875 (1113)
Q Consensus       816 ~~---~~~v~~l~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~-------------~~~~i~~l~~s~~d~~~l  875 (1113)
                      .|   ...|.+++|+|++++|++++ |   +.|++||+.+++.+..+..             |...|.+++|+| ++++|
T Consensus       228 ~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  306 (397)
T 1sq9_A          228 SMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETL  306 (397)
T ss_dssp             ---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEE
T ss_pred             cccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEE
Confidence            03   56677888888888888887 6   7888888888888888887             899999999999 89999


Q ss_pred             EEEecCCcEEEEEcccceeeeeec------cc---------------ccCeEEEEEcCCC----------CEEEEEeCCC
Q 001258          876 AIGMDDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADS  924 (1113)
Q Consensus       876 a~g~~dg~v~iwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~L~s~s~D~  924 (1113)
                      ++++.||.|++||+.+++.+..+.      +|               ...|++++|+|++          ++|++++.|+
T Consensus       307 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg  386 (397)
T 1sq9_A          307 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDR  386 (397)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTT
T ss_pred             EEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCC
Confidence            999999999999999999999999      88               9999999999998          7999999999


Q ss_pred             cEEEEeCCCC
Q 001258          925 QLCVWSSDGW  934 (1113)
Q Consensus       925 ~v~iwd~~~~  934 (1113)
                      .|++|++.++
T Consensus       387 ~i~iw~~~~g  396 (397)
T 1sq9_A          387 SIRWFREAGG  396 (397)
T ss_dssp             EEEEEEEEC-
T ss_pred             cEEEEEcCCC
Confidence            9999999874

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.5e-32  Score=307.45  Aligned_cols=306  Identities=11%  Similarity=0.110  Sum_probs=243.9

Q ss_pred             cceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       349 ~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      .+.....+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+.                   .+.+|.+.|.+++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~   82 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV   82 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence            344556679999999999999995 9999999999999999988776                   37789999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-----CcEEEEeCCCCc---
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA---  500 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-----~~i~iwd~~~~~---  500 (1113)
                      +|++++|++++.||.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+..+.   
T Consensus        83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           83 DCFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence            9999999999999999999999998766   444 888999999999999  78888888     999999998764   


Q ss_pred             --------eeeEeeccCc--CEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258          501 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       501 --------~~~~~~~h~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                              .+..+..|..  .+.+++|++  ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++.   
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~---  231 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLT---  231 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSS---
T ss_pred             eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCC---
Confidence                    3445566666  899999876  457999999999999999998 455556666666666666666655   


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                                        +|++++.|+.|++||+.+++.+..+..   ...+.+++|+|+++++++++.++...+|....
T Consensus       232 ------------------~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          232 ------------------YFITSSRDTNSFLVDVSTLQVLKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             ------------------EEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             ------------------EEEEecCCceEEEEECCCCceeeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence                              799999999999999999999888873   34689999999999999999998666554322


Q ss_pred             CccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeE
Q 001258          650 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  729 (1113)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw  729 (1113)
                      ..                                                                      ....+++|
T Consensus       291 ~~----------------------------------------------------------------------~~~~i~~~  300 (369)
T 3zwl_B          291 NE----------------------------------------------------------------------GKFEARFY  300 (369)
T ss_dssp             --------------------------------------------------------------------------CEEEEE
T ss_pred             CC----------------------------------------------------------------------CcceeEEE
Confidence            10                                                                      01245666


Q ss_pred             eccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcccc
Q 001258          730 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  783 (1113)
Q Consensus       730 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~  783 (1113)
                      +..........       .+|...|.+++|+|+++.|++++.||.|++|++...
T Consensus       301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            65543211111       237789999999999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.1e-32  Score=339.66  Aligned_cols=211  Identities=18%  Similarity=0.283  Sum_probs=175.9

Q ss_pred             cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCCcee--eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcE
Q 001258          415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  491 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i  491 (1113)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+....  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence            47899999999999986 479999999999999999864321  12336889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee---eCCCCceEEEEEccCCCeE
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~  568 (1113)
                      +|||+.++.++..+.+|...|.+++|++  ++.+|++++.|++|++||..........   ..|...|.+++|+|++.  
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  530 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL--  530 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence            9999999999999999999999999875  4578999999999999997642221111   22344455555555442  


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                                       ...+++++.|+.|++||+.+++....+..|  ...|.+++|+|++++|++++.||.|++||+.
T Consensus       531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                             146999999999999999999998888766  4579999999999999999999999999987


Q ss_pred             CC
Q 001258          649 DG  650 (1113)
Q Consensus       649 ~~  650 (1113)
                      ++
T Consensus       592 ~~  593 (694)
T 3dm0_A          592 EG  593 (694)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.3e-32  Score=300.42  Aligned_cols=255  Identities=16%  Similarity=0.207  Sum_probs=207.9

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      ..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.++  +.+.                   .+.+|.+.|++++|+|+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~   64 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   64 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred             ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence            3459999999999999995 999999999999999753  2222                   47899999999999874


Q ss_pred             --CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEe
Q 001258          432 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  505 (1113)
Q Consensus       432 --g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~  505 (1113)
                        |++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++.  ....+
T Consensus        65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~  141 (297)
T 2pm7_B           65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII  141 (297)
T ss_dssp             GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred             CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence              899999999999999999987522 22357789999999999998  67  79999999999999998764  24677


Q ss_pred             eccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          506 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      .+|...|.+++|++..           ++.+|++|+.|+.|++||+++..    ....+..|...|.+++|+|++.    
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~----  217 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----  217 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence            8999999999998752           24699999999999999998765    3345667777788777777641    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc--e-EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--L-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                                    .+.+|++++.|++|++||+.+..  . ...+..+.+...|.+++|+|++++|++++.|+.|++|+.
T Consensus       218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence                          02369999999999999997743  1 223322344567899999999999999999999999997


Q ss_pred             CC
Q 001258          648 SD  649 (1113)
Q Consensus       648 ~~  649 (1113)
                      ..
T Consensus       284 ~~  285 (297)
T 2pm7_B          284 NL  285 (297)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.3e-32  Score=313.52  Aligned_cols=252  Identities=13%  Similarity=0.196  Sum_probs=194.1

Q ss_pred             EeccCCCCcEEEEEcCCC-CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258          353 RTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  430 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg-~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  430 (1113)
                      ...+|.+.|++++|+|+| + +|++|+.||.|+|||+.+++.....                 ...+|.+.|.+++|+| 
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------------~~~~h~~~v~~~~~~~~  129 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFI-----------------QGMGPGDAITGMKFNQF  129 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEE-----------------CCCSTTCBEEEEEEETT
T ss_pred             eccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceee-----------------ecCCcCCceeEEEeCCC
Confidence            334599999999999999 6 6999999999999999988765421                 1347999999999999 


Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  +|++++.|+.|++||+ +++++..+.+|..
T Consensus       130 ~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~  205 (383)
T 3ei3_B          130 NTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKA  205 (383)
T ss_dssp             EEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSS
T ss_pred             CCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCC
Confidence            789999999999999999996 44443333345668999999999999  7999999999999998 6888999999999


Q ss_pred             CEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCC----CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      .|.+++|++..  . ++++++.|+.|++||+++..    ....+ .+...|.+++|+|.                    +
T Consensus       206 ~v~~~~~~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~--------------------~  262 (383)
T 3ei3_B          206 KVTHAEFNPRC--DWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPT--------------------D  262 (383)
T ss_dssp             CEEEEEECSSC--TTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTT--------------------T
T ss_pred             cEEEEEECCCC--CCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCC--------------------C
Confidence            99999987644  5 89999999999999998732    22222 34444555555440                    4


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCC-----CCCCcCeEEECCCCCEEE---------EEECCCcEEEEEcCCC
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLA---------VSTNDNGIKILATSDG  650 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~---------~~~~dg~i~iwd~~~~  650 (1113)
                      +.+|++++.|+.|++||+.+++....+..+.     +...+. +.|+|++..++         +++.|+.|++||+.++
T Consensus       263 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~  340 (383)
T 3ei3_B          263 STKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSG  340 (383)
T ss_dssp             SCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTC
T ss_pred             CCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCceEEEecCCcccccCCCCeEEEEecCCC
Confidence            5579999999999999999988776665432     122233 45555555444         3445666666666555

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=307.28  Aligned_cols=299  Identities=12%  Similarity=0.173  Sum_probs=235.6

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCceeeEe-eccCcCEEEEeeeecC-CceEEEEEecCCc
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK  534 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~---d~~i~iwd~~~~~~~~~~-~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~  534 (1113)
                      .+.+|...|.+++|+|++.. ++++|+.   |+.|++||+.+++..... .+|...|.+++|++.. ++.+|++++.||.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            45789999999999999975 5667776   999999999998876543 3799999999988752 2579999999999


Q ss_pred             EEEEEcCCCC-CeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc-eEEEE
Q 001258          535 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI  612 (1113)
Q Consensus       535 i~iwd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  612 (1113)
                      |++||+.+.. ....+..|...|.++.|.+.               ++|+|++++|++++.|+.|++||+.+++ .+..+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence            9999999887 67778888888888866432               2356667789999999999999999887 67777


Q ss_pred             ccCCC--CCCcCeEE----ECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhh
Q 001258          613 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  686 (1113)
Q Consensus       613 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1113)
                      ..+..  ...+.+++    |+|+++++++++.||.|++||+.++. ....                              
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------  205 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------  205 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence            65433  23677787    78899999999999999999987651 1000                              


Q ss_pred             cccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceE
Q 001258          687 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  766 (1113)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l  766 (1113)
                                                                                   .                  
T Consensus       206 -------------------------------------------------------------~------------------  206 (357)
T 3i2n_A          206 -------------------------------------------------------------T------------------  206 (357)
T ss_dssp             -------------------------------------------------------------E------------------
T ss_pred             -------------------------------------------------------------c------------------
Confidence                                                                         0                  


Q ss_pred             EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec---CCCEEEEEe-CCeEE
Q 001258          767 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS  842 (1113)
Q Consensus       767 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~---~~~~l~~~s-dg~i~  842 (1113)
                                                                       .|...|.+++|+|   ++.++++++ ||.|+
T Consensus       207 -------------------------------------------------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          207 -------------------------------------------------NIKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             -------------------------------------------------ECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             -------------------------------------------------CCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                                                             0344556666666   666666666 67777


Q ss_pred             EEECCCCceeeeec-----CCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEcccc-------------------eeeee
Q 001258          843 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK  897 (1113)
Q Consensus       843 vwd~~~~~~~~~~~-----~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~-------------------~~~~~  897 (1113)
                      +||+.+++....+.     +|...|.+++|+| ++. +|++|+.||.|++||+.++                   +.+..
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            77776655554443     8999999999999 776 8999999999999999753                   46778


Q ss_pred             ecccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC
Q 001258          898 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW  934 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~  934 (1113)
                      +.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            899999999999999999998 8999999999999873

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=315.44  Aligned_cols=362  Identities=12%  Similarity=0.156  Sum_probs=247.9

Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      .++.+++|++..++....+..|  ...|.+++|+| ++++|++++.||.|++|++.++. ....+.....          
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~----------   87 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIH--GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAV----------   87 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCC--SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEE----------
T ss_pred             ccCcceeeccccCcceeeeecc--CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEecccc----------
Confidence            3556788888888877777765  55899999999 99999999999999999998762 2211110000          


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                              ....           .....+|..
T Consensus        88 --------------------------------------------------------~~~~-----------~~~~~~~~~  100 (408)
T 4a11_B           88 --------------------------------------------------------CSIG-----------RDHPDVHRY  100 (408)
T ss_dssp             --------------------------------------------------------EEEC-----------TTCTTCCSS
T ss_pred             --------------------------------------------------------cccc-----------ccccccCCC
Confidence                                                                    0000           000023788


Q ss_pred             ceEEEEEeC-CCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC-
Q 001258          753 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-  830 (1113)
Q Consensus       753 ~i~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~-  830 (1113)
                      .|.+++|+| ++..+++++.||.+++|++...                      ..... +   .+...+.++++++.+ 
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~~-~---~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----------------------QTADV-F---NFEETVYSHHMSPVST  154 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTT----------------------EEEEE-E---ECSSCEEEEEECSSCS
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC----------------------cccee-c---cCCCceeeeEeecCCC
Confidence            999999999 7789999999999999987632                      11111 0   156678899998854 


Q ss_pred             --CEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEcccce-eeeee-------
Q 001258          831 --SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL-------  898 (1113)
Q Consensus       831 --~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~~-~~~~l-------  898 (1113)
                        .++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++. +|++|+.||.|++||+.++. .+..+       
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence              4898888 89999999999999999999999999999999 555 79999999999999998754 33333       


Q ss_pred             --------cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          899 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       899 --------~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                              .+|...|++++|+|++++|++++.|+.|++||+.+++..............  ............+.+++++
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  311 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVP  311 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEE
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccccc--ccceeEEecCCCceEEEEe
Confidence                    579999999999999999999999999999999987643221111111111  0122333344455666668


Q ss_pred             cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccce
Q 001258          971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i 1050 (1113)
                      .++.|++||+.+++.+..+.  +|...|++++|+|++++|++++.||.|++||+.+++.+....       .+..     
T Consensus       312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~-------~~~~-----  377 (408)
T 4a11_B          312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDD-------ETTT-----  377 (408)
T ss_dssp             ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred             cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCC-------ceEe-----
Confidence            99999999999999998876  789999999999999999999999999999999998775443       1111     


Q ss_pred             EEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1051 VIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1051 ~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ...+.|.+...+.+.+.|+.+++|+.+.
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          378 KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------------
T ss_pred             ccccccccceeecccCccCceeecCCcc
Confidence            1223333455677888899999998653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=310.68  Aligned_cols=258  Identities=13%  Similarity=0.183  Sum_probs=204.5

Q ss_pred             eeEecc-CCCCcEEEEEcCCCCeEEEEEec---CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          351 VTRTLN-QGSSPMSMDFHPVQQTLLLVGTN---VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       351 ~~~~~~-h~~~V~~~~~spdg~~ll~~gs~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      +...+. |.+.|++++|+|++++++++|+.   ||.|+|||+.+++....                  ...+|...|.++
T Consensus        10 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~   71 (357)
T 3i2n_A           10 IAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCG   71 (357)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEE
T ss_pred             hhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEE
Confidence            334434 99999999999999888888887   99999999998876542                  233688999999


Q ss_pred             EEcCC---CCeEEEEeCCCeEEEEEccCCc-eeeeeeeeecccCCeeEEE------EcCCCCeeEEEEecCCCcEEEEeC
Q 001258          427 IWSPD---GSLFGVAYSRHIVQIYSYHGGD-EVRQHLEIDAHVGGVNDIA------FSHPNKQLCVITCGDDKTIKVWDA  496 (1113)
Q Consensus       427 ~~spd---g~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~V~~v~------~s~~~~~~~l~s~s~d~~i~iwd~  496 (1113)
                      +|+|+   |++|++|+.||.|++||+.+++ .+.   .+.+|...|.+++      |+|+++  +|++++.|+.|++||+
T Consensus        72 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~  146 (357)
T 3i2n_A           72 TFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDP  146 (357)
T ss_dssp             ECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECT
T ss_pred             EEcCCCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeC
Confidence            99998   7999999999999999999887 444   6789999999995      578888  7999999999999999


Q ss_pred             CCCc-eeeEeeccCc----CEEEEeee--ecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258          497 TNGA-KQYIFEGHEA----PVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       497 ~~~~-~~~~~~~h~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      .+++ .+..+..|.+    .+.+++|.  .++++.++++++.||.|++||+++..... ...+...+.+++|+|.+.   
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~---  222 (357)
T 3i2n_A          147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDI---  222 (357)
T ss_dssp             TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSS---
T ss_pred             CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCC---
Confidence            9987 7788876655    78888842  23566899999999999999998755432 233444555555555100   


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEc---cCCCCCCcCeEEECCCCC-EEEEEECCCcEEEE
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGC-LLAVSTNDNGIKIL  645 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw  645 (1113)
                                     +++++++++.||.|++||+.+++....+.   ...+...|.+++|+|+++ ++++++.||.|++|
T Consensus       223 ---------------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw  287 (357)
T 3i2n_A          223 ---------------SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW  287 (357)
T ss_dssp             ---------------SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred             ---------------CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence                           45579999999999999998876554443   113355799999999998 89999999999999


Q ss_pred             EcCCC
Q 001258          646 ATSDG  650 (1113)
Q Consensus       646 d~~~~  650 (1113)
                      |+.++
T Consensus       288 d~~~~  292 (357)
T 3i2n_A          288 KYEYP  292 (357)
T ss_dssp             EEECC
T ss_pred             ecCCC
Confidence            99876

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.8e-32  Score=312.42  Aligned_cols=290  Identities=14%  Similarity=0.229  Sum_probs=226.4

Q ss_pred             ceeEEEecCCC-CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccc
Q 001258          576 SLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       576 ~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                      .+.+++|+|++ ++|++++.||.|++||+.+++....+...++...|.+++|+| ++++|++++.|+.|++||+.+.  .
T Consensus        75 ~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~--~  152 (383)
T 3ei3_B           75 RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS--V  152 (383)
T ss_dssp             CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC--E
T ss_pred             CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC--c
Confidence            34444444444 579999999999999999999888887655677899999999 7899999999999999998632  1


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ...+..                                                                          
T Consensus       153 ~~~~~~--------------------------------------------------------------------------  158 (383)
T 3ei3_B          153 IQVFAK--------------------------------------------------------------------------  158 (383)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             eEEEec--------------------------------------------------------------------------
Confidence            110000                                                                          


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~  891 (1113)
                      ...+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+.+
T Consensus       159 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~  236 (383)
T 3ei3_B          159 TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRN  236 (383)
T ss_dssp             CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGG
T ss_pred             cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCC
Confidence            001456688888899999998888 899999998 5678888889999999999999 676 999999999999999998


Q ss_pred             ----ceeeeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcccccccccc--CCCCCC-------CCCCCce
Q 001258          892 ----DEVKSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTP-------TAQSDTR  957 (1113)
Q Consensus       892 ----~~~~~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~  957 (1113)
                          +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++.........  ...+..       ....+..
T Consensus       237 ~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  315 (383)
T 3ei3_B          237 IKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIV  315 (383)
T ss_dssp             CCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEE
T ss_pred             CCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceE
Confidence                5666666 6999999999999 99999999999999999999876533211110  001110       0012233


Q ss_pred             EEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC
Q 001258          958 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       958 ~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      ++|+|||++ ..+.|+.|++||+.+++.+..+....|...+.+++|+||+++|++|+ ||.|++||+++
T Consensus       316 ~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          316 AGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            555666655 22478999999999999999887655788889999999999999997 99999999875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=2.5e-32  Score=309.21  Aligned_cols=310  Identities=17%  Similarity=0.251  Sum_probs=240.3

Q ss_pred             cCCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258          356 NQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1113)
Q Consensus       356 ~h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  431 (1113)
                      +|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|+|+ 
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~~   81 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYDS   81 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEECT
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccCC
Confidence            59999999999985   54456777778899999999887764311              1112347789999999999 


Q ss_pred             ---CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEe--
Q 001258          432 ---GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF--  505 (1113)
Q Consensus       432 ---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--  505 (1113)
                         |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+  
T Consensus        82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~  156 (366)
T 3k26_A           82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG  156 (366)
T ss_dssp             TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred             CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence               6799999999999999999988665   6789999999999999 777  7999999999999999999999888  


Q ss_pred             -eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCC-------------eEEec
Q 001258          506 -EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQG  571 (1113)
Q Consensus       506 -~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~~  571 (1113)
                       .+|...|.+++|++  ++.+|++++.||.|++||+++......+..      .+.+++++.             .....
T Consensus       157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (366)
T 3k26_A          157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTRD  228 (366)
T ss_dssp             TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred             cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCcccccc
Confidence             68999999999876  457999999999999999987544332221      011111111             01111


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--------------EEEEccCCCCCCcCeEEECCC--CCEEEE
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLAV  635 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~~  635 (1113)
                      .+...+.+++|+  ++++++++.|+.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++
T Consensus       229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~  304 (366)
T 3k26_A          229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLAL  304 (366)
T ss_dssp             SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEE
T ss_pred             CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEE
Confidence            134467777777  66899999999999999987654              5666555  457999999999  999999


Q ss_pred             EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258          636 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  715 (1113)
Q Consensus       636 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (1113)
                      ++.||.|++||+.++........                                                         
T Consensus       305 ~~~dg~i~vwd~~~~~~~~~~~~---------------------------------------------------------  327 (366)
T 3k26_A          305 GNQVGKLYVWDLEVEDPHKAKCT---------------------------------------------------------  327 (366)
T ss_dssp             ECTTSCEEEEECCSSSGGGCEEE---------------------------------------------------------
T ss_pred             EecCCcEEEEECCCCCCccccce---------------------------------------------------------
Confidence            99999999999987621110000                                                         


Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEcc
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  781 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~  781 (1113)
                                                  .+....+...|.+++|+|+++.|++++.||.|++||+.
T Consensus       328 ----------------------------~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          328 ----------------------------TLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             ----------------------------EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ----------------------------EEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence                                        00001136889999999999999999999999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.9e-32  Score=312.54  Aligned_cols=257  Identities=12%  Similarity=0.102  Sum_probs=210.3

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC----
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----  431 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----  431 (1113)
                      +|.+.|++++|+|  + +|++|+.||.|+|||+.+++....             ......+.+|...|.+++|+|+    
T Consensus        14 ~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~-------------~~~~~~~~~h~~~v~~~~~~~~~~~~   77 (397)
T 1sq9_A           14 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENP-------------KDKSYSHFVHKSGLHHVDVLQAIERD   77 (397)
T ss_dssp             CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCG-------------GGGEEEEECCTTCEEEEEEEEEEETT
T ss_pred             hhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccC-------------CCcceEEecCCCcEEEEEEecccccC
Confidence            4999999999999  5 599999999999999998771100             0001136689999999999999    


Q ss_pred             C---CeEEEEeCCCeEEEEEccCCce-----eeeeeeeecc-----cCCeeEEEEc----CCCCeeE-EEEecCCCcEEE
Q 001258          432 G---SLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDDKTIKV  493 (1113)
Q Consensus       432 g---~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h-----~~~V~~v~~s----~~~~~~~-l~s~s~d~~i~i  493 (1113)
                      |   ++|++++.|+.|++||+.+++.     +.   .+..|     ...|.+++|+    |+++  + |++++.|+.|++
T Consensus        78 g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i  152 (397)
T 1sq9_A           78 AFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI  152 (397)
T ss_dssp             TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred             CccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence            9   9999999999999999998875     44   57778     5899999999    9999  7 999999999999


Q ss_pred             EeCCC------Cceee-----Eeec-------cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC---C
Q 001258          494 WDATN------GAKQY-----IFEG-------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---P  552 (1113)
Q Consensus       494 wd~~~------~~~~~-----~~~~-------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~  552 (1113)
                      ||+.+      ++.+.     .+.+       |...|.+++|++  ++ ++++++.||.|++||+++......+..   |
T Consensus       153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h  229 (397)
T 1sq9_A          153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM  229 (397)
T ss_dssp             EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred             EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence            99998      77777     7754       889999999765  55 999999999999999998776666665   5


Q ss_pred             ---CCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC---CcEEEEECCCCceEEEEccCC----------
Q 001258          553 ---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG----------  616 (1113)
Q Consensus       553 ---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~----------  616 (1113)
                         ...+.+++|+|++                     ++|++++.|   +.|++||+.+++.+..+....          
T Consensus       230 ~~~~~~i~~i~~~~~~---------------------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          230 INNSNSIRSVKFSPQG---------------------SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             -CCCCCEEEEEECSST---------------------TEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCB
T ss_pred             cccCCccceEEECCCC---------------------CEEEEEecCCCCceEEEEECCCCcccceeccCccccccccccc
Confidence               5556665555555                     479999999   999999999999999887610          


Q ss_pred             -CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          617 -GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       617 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                       +...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~  330 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN  330 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence             2457999999999999999999999999999887 5555443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.8e-32  Score=308.57  Aligned_cols=244  Identities=12%  Similarity=0.092  Sum_probs=204.5

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc--eeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      |.++|++++|+|+|++ |++|+.||.|+|||+.+++  .+.                   .+.+|...|.+++|+|++++
T Consensus         7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence            8899999999999994 9999999999999999886  333                   36789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce---ee-EeeccCc
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QY-IFEGHEA  510 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~-~~~~h~~  510 (1113)
                      |++++.||.|++||+.+++... ...+..|...|.+++|+|+++  ++++++.|+.|++||+..+..   .. ...+|..
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            9999999999999999887443 234568999999999999999  799999999999999998773   23 3367899


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCC------------------CCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN------------------LGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      .|.+++|++  ++.++++++.||.|++||+..                  ......+..+..                  
T Consensus       144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------  203 (372)
T 1k8k_C          144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG------------------  203 (372)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS------------------
T ss_pred             CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC------------------
Confidence            999999876  457999999999999999752                  233333333344                  


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                         .+..++|+|++++|++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++++++++ .|+.|++|++.+
T Consensus       204 ---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          204 ---WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             ---CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             ---eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence               4455555555568999999999999999999999998866  3479999999999988887 899999999987

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.7e-32  Score=308.65  Aligned_cols=324  Identities=13%  Similarity=0.143  Sum_probs=239.7

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      +..|.++|++++|+|++++|++++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45689999999999999999999999999999999886 123336889999999999999999  799999999999999


Q ss_pred             CCCCceeeE--eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee---e-eeCCCCceEEEEEccCCCeEE
Q 001258          496 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---D-YEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       496 ~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~-~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      +.+++....  +..|...|.+++|++  ++.+|++++.||.|++||++......   . ...+...|             
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i-------------  145 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTV-------------  145 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCE-------------
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCe-------------
Confidence            998875544  467999999999875  45799999999999999998766421   1 12233444             


Q ss_pred             eccccCceeEEEecCCCCEEEEEecCCcEEEEEC------------------CCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGC  631 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~  631 (1113)
                              ..++|+|+++++++++.||.|++||+                  ..++.+..+..+  ...|.+++|+|+++
T Consensus       146 --------~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~  215 (372)
T 1k8k_C          146 --------LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGS  215 (372)
T ss_dssp             --------EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSS
T ss_pred             --------eEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCC
Confidence                    44555555558999999999999995                  366777777655  45799999999999


Q ss_pred             EEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcccc
Q 001258          632 LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  711 (1113)
Q Consensus       632 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (1113)
                      +|++++.|+.|++||+.++ +.+..+.                                                     
T Consensus       216 ~l~~~~~d~~i~i~d~~~~-~~~~~~~-----------------------------------------------------  241 (372)
T 1k8k_C          216 RVAWVSHDSTVCLADADKK-MAVATLA-----------------------------------------------------  241 (372)
T ss_dssp             EEEEEETTTEEEEEEGGGT-TEEEEEE-----------------------------------------------------
T ss_pred             EEEEEeCCCEEEEEECCCC-ceeEEEc-----------------------------------------------------
Confidence            9999999999999999876 3322221                                                     


Q ss_pred             CCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCce
Q 001258          712 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA  791 (1113)
Q Consensus       712 ~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~  791 (1113)
                                                           .|...|.+++|+|+++.++++ .|+.+++|++...        
T Consensus       242 -------------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~--------  275 (372)
T 1k8k_C          242 -------------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA--------  275 (372)
T ss_dssp             -------------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT--------
T ss_pred             -------------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCc--------
Confidence                                                 145678999999999877666 8999999987520        


Q ss_pred             eeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEE---ECCCCce------eeeecCCCCCe
Q 001258          792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKT------MATFMPPPPAA  862 (1113)
Q Consensus       792 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw---d~~~~~~------~~~~~~~~~~i  862 (1113)
                                  .+.....      +.....        ..-..+....+++|   +......      .....+|...|
T Consensus       276 ------------~~~~~~~------~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  329 (372)
T 1k8k_C          276 ------------AGKLSFG------GRLDVP--------KQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSV  329 (372)
T ss_dssp             ------------TTEEEEC------CCCCCC----------------CHHHHHHHCCCCC---------CCCSSSSSSCE
T ss_pred             ------------CceEEEe------eccCcc--------ccchhhhcchhhhhhhcccccccccCccccccccccccCCc
Confidence                        0110000      000000        00011113445555   4332221      22234899999


Q ss_pred             eEEEEecCCC---cEEEEEecCCcEEEEEcccce
Q 001258          863 TFLAFHPQDN---NIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       863 ~~l~~s~~d~---~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      ++++|++.++   .+|++|+.||.|++||+.+++
T Consensus       330 ~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          330 SQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            9999876477   999999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.1e-32  Score=316.97  Aligned_cols=293  Identities=15%  Similarity=0.206  Sum_probs=221.2

Q ss_pred             eeEEEecC-CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCCcEEEEEcCCCccce
Q 001258          577 LGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       577 i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                      |.+++|+| ++++|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++++|++++.||+|++||+.++.  .
T Consensus       122 V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~--~  199 (435)
T 4e54_B          122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI--L  199 (435)
T ss_dssp             EEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE--E
T ss_pred             EEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc--e
Confidence            44444444 23479999999999999999887776666666677899999998 78999999999999999975431  0


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+..                                                                           
T Consensus       200 ~~~~~---------------------------------------------------------------------------  204 (435)
T 4e54_B          200 RVFAS---------------------------------------------------------------------------  204 (435)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             eEEec---------------------------------------------------------------------------
Confidence            00000                                                                           


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                     .
T Consensus       205 -------------------------------------------------------------------------------~  205 (435)
T 4e54_B          205 -------------------------------------------------------------------------------S  205 (435)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      ..+...+.+++|+|++++|++|+ ||.|++||+.. +.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~  284 (435)
T 4e54_B          206 DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVR  284 (435)
T ss_dssp             SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCC
T ss_pred             CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEeccccc
Confidence            00344567889999999999998 89999999864 56778889999999999999555689999999999999998865


Q ss_pred             eeee---ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          894 VKSK---LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       894 ~~~~---l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ....   ..+|...|++++|+|||++|++++.|++|++||+.+++.........  ........+....|+|++..++++
T Consensus       285 ~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  362 (435)
T 4e54_B          285 GKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP--HRHFQHLTPIKAAWHPRYNLIVVG  362 (435)
T ss_dssp             SSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCC--CCCCSSSCCCBCEECSSSSCEEEE
T ss_pred             ccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccc--ccccccceeEEEEEcCCCCEEEEE
Confidence            4433   36799999999999999999999999999999999876543211111  000001123455677776666653


Q ss_pred             -------------cCCeEEEEeCCccceeeccccCCCCCCeeEE-EECCCCCEEEEEeCCCcEEEEecCCCcee
Q 001258          971 -------------HETQLAIFETTKLECVKQWVPRESSAPITHA-TFSCDSQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus       971 -------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l-~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
                                   .++.|++||..+++.+..+. .+|...|.++ +|+|||++|++|+ |+.|+||++.+++..
T Consensus       363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~-~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          363 RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLY-DPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEEC-CSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEe-CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                         23579999999999988765 3678888887 6999999999876 889999999988653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-31  Score=296.83  Aligned_cols=246  Identities=19%  Similarity=0.261  Sum_probs=207.0

Q ss_pred             ceeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       350 ~~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      +..+.+ +|.+.|++++| |++++ |++|+.||.|++||+.+++...                   .+..|...|.+++|
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~   67 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY   67 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence            344444 49999999999 99995 9999999999999998877655                   35678999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                      +|++++|++++.|+.|++|++...........+.+|...|.+++|  +++  ++++++.|+.|++||  .++.+..+..|
T Consensus        68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~  141 (313)
T 3odt_A           68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAH  141 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred             CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccC
Confidence            999999999999999999999876544445578899999999999  466  799999999999999  77888899999


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      ...+.+++|.+. ++.++++++.||.|++||..  .....+.. +...+.+++|+|++.                     
T Consensus       142 ~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~~---------------------  197 (313)
T 3odt_A          142 NASVWDAKVVSF-SENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGH---------------------  197 (313)
T ss_dssp             SSCEEEEEEEET-TTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEETTE---------------------
T ss_pred             CCceeEEEEccC-CCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcCCCe---------------------
Confidence            999999998763 44799999999999999933  33444444 555666666666554                     


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                       +++++.||.|++||+.+++.+..+..+  ...|.+++|+|++ .+++++.||.|++||+.++
T Consensus       198 -~~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          198 -FISCSNDGLIKLVDMHTGDVLRTYEGH--ESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             -EEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             -EEEccCCCeEEEEECCchhhhhhhhcC--CceEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence             899999999999999999999998766  4579999999999 5889999999999998877

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-33  Score=317.18  Aligned_cols=327  Identities=12%  Similarity=0.100  Sum_probs=244.4

Q ss_pred             cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       463 ~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      .-...|.+|+|+|||+  ++||++.|++|+  |...++++   .+|...|.+++|+|.+         .++.+.+|+.  
T Consensus        13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsPdg---------~~~~~~~~~~--   74 (588)
T 2j04_A           13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFPLE---------FENKLDFELA--   74 (588)
T ss_dssp             CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEECCC---------CCCTTTTSCC--
T ss_pred             HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECCCC---------CcceEEEEeC--
Confidence            4457999999999999  899999999999  76555544   7999999999987643         4555555543  


Q ss_pred             CCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC---C
Q 001258          543 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L  618 (1113)
Q Consensus       543 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~  618 (1113)
                       +....+. .+...|.+++|+|+|.                     +|++++.||.|++||..+  ++..+. +..   .
T Consensus        75 -~~~~~~~~~~~~~V~~vawSPdG~---------------------~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           75 -QQNGLLNSQPVCYPRVCKPSPIDD---------------------WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             -CSSCSSTTSCSCCEEEEEECSSSS---------------------CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             -CCceEeecCCCCcEEEEEECCCCC---------------------EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence             3222222 2345566666666655                     799999999999999644  555555 321   1


Q ss_pred             CCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccc
Q 001258          619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  698 (1113)
Q Consensus       619 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1113)
                      ..+.+++|||||++|++|+.||+|++|++.++. ....                 .|                       
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~-----------------------  168 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF-----------------------  168 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence            258899999999999999999999999987651 1000                 00                       


Q ss_pred             cccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEE
Q 001258          699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  778 (1113)
Q Consensus       699 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  778 (1113)
                                                 +.                                               +..+
T Consensus       169 ---------------------------i~-----------------------------------------------l~ti  174 (588)
T 2j04_A          169 ---------------------------YF-----------------------------------------------ESSI  174 (588)
T ss_dssp             ---------------------------EE-----------------------------------------------EEEE
T ss_pred             ---------------------------ee-----------------------------------------------eeee
Confidence                                       00                                               0000


Q ss_pred             EccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCce---eeee
Q 001258          779 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF  855 (1113)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~---~~~~  855 (1113)
                      ..                              ..  .+|...|.+++|+||| +++++.|++|++||+.++..   .+++
T Consensus       175 ~~------------------------------~~--~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          175 RL------------------------------SD--AGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             EC------------------------------SC--TTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             ec------------------------------cc--ccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence            00                              00  1267789999999999 44444499999999987774   3456


Q ss_pred             -cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE--cCCCCEEEEEeCCCcEEEEeCC
Q 001258          856 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       856 -~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                       .+|...|.+++|+   ++.||+++ ++.|++||+.+++......+|.+.|.+++|  +||+..|++++.||+ ++|..+
T Consensus       222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             4788899999999   37888887 699999999988774444489999999999  999999999999999 999976


Q ss_pred             CCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      .                        ++++||+..++.. |+++++|+..... ...+   .+...|.+++|||||+.+|+
T Consensus       297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred             c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence            2                        5589999887775 9999999986554 3333   23667999999999999998


Q ss_pred             Ee
Q 001258         1013 CF 1014 (1113)
Q Consensus      1013 ~~ 1014 (1113)
                      ++
T Consensus       348 ~~  349 (588)
T 2j04_A          348 VY  349 (588)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-33  Score=318.55  Aligned_cols=257  Identities=14%  Similarity=0.122  Sum_probs=194.5

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      |.+.|++++|+|+|++ |++|+.||.|+|||+.++  +.+.                   .+.+|.+.|.+++|+|++++
T Consensus        10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred             CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence            6789999999999994 999999999999999987  3332                   47789999999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc---eeeEeec-cCc
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA  510 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~---~~~~~~~-h~~  510 (1113)
                      |++++.|++|+|||+.+++.......+.+|...|.+++|+|+++  +|++++.|++|++||+.+++   ....+.+ |..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            99999999999999998873333446788999999999999999  79999999999999999887   4778888 999


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCC--CC--ceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  586 (1113)
                      .|.+++|++  ++.+|++++.||.|++||+............  ..  ....+.      ..+  .+...+..++|+|++
T Consensus       148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred             CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence            999999876  4579999999999999999643311110000  00  000000      001  233456677777777


Q ss_pred             CEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          587 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      ++|++++.|+.|++||+.+++.    +..+..+  ...|.+++|+|++++|++++.++.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            7899999999999999999887    6666655  4479999999999999998776665 66554

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.6e-32  Score=308.69  Aligned_cols=294  Identities=12%  Similarity=0.152  Sum_probs=215.8

Q ss_pred             cCCeeEEEEcCCCCeeEEEEecCCC-------cEEEEeCCCCcee----------eEeeccCcCEEEEeeeecCCceEEE
Q 001258          465 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAKQ----------YIFEGHEAPVYSVCPHHKENIQFIF  527 (1113)
Q Consensus       465 ~~~V~~v~~s~~~~~~~l~s~s~d~-------~i~iwd~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~~~l~  527 (1113)
                      ..+|++++|+||++  +|++||.|.       .|++|++..+...          ..+.+|...|.++++.  .  ..++
T Consensus        14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred             CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence            35899999999999  789987544       5999998765321          2456777778777642  3  4677


Q ss_pred             EEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc
Q 001258          528 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  607 (1113)
Q Consensus       528 s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  607 (1113)
                      +|..++..++|                                                    +++.|+.+++|++....
T Consensus        88 ~g~~~~~~~l~----------------------------------------------------s~~~d~~~r~~~~~~~~  115 (365)
T 4h5i_A           88 VGCNENSTKIT----------------------------------------------------QGKGNKHLRKFKYDKVN  115 (365)
T ss_dssp             EECCCCHHHHH----------------------------------------------------HTSCCCCEEEEEEETTT
T ss_pred             EEECCCccEEE----------------------------------------------------EecCCCcEEEEEecCCC
Confidence            76655444333                                                    33345566666654432


Q ss_pred             eE----EEEc---cCCCCCCcCeEEECCCCCEEEEEE--CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccc
Q 001258          608 LL----TSID---ADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  678 (1113)
Q Consensus       608 ~~----~~~~---~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1113)
                      ..    ....   .......+.+++|+|||+++++++  .|++|++||+.++ +....+.                    
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-~~~~~~~--------------------  174 (365)
T 4h5i_A          116 DQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-TEKFEIE--------------------  174 (365)
T ss_dssp             TEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT-EEEEEEE--------------------
T ss_pred             ceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-cEEEEeC--------------------
Confidence            11    1111   112223477899999999987655  6899999999877 2222111                    


Q ss_pred             hhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEE
Q 001258          679 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  758 (1113)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  758 (1113)
                                                                                             |...|.+++
T Consensus       175 -----------------------------------------------------------------------~~~~V~~v~  183 (365)
T 4h5i_A          175 -----------------------------------------------------------------------TRGEVKDLH  183 (365)
T ss_dssp             -----------------------------------------------------------------------CSSCCCEEE
T ss_pred             -----------------------------------------------------------------------CCCceEEEE
Confidence                                                                                   445688999


Q ss_pred             EeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc-ccccCCCCCCCCccEEEEecCCCEEEEEe
Q 001258          759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS  837 (1113)
Q Consensus       759 ~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~-~~~~~~~~~~~~v~~l~~s~~~~~l~~~s  837 (1113)
                      |+|||+++++++.++. .+|+..                      ++... ....  ..|...|.+++|+|+++++++++
T Consensus       184 fspdg~~l~s~s~~~~-~~~~~~----------------------~~~~~~~~~~--~~~~~~v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          184 FSTDGKVVAYITGSSL-EVISTV----------------------TGSCIARKTD--FDKNWSLSKINFIADDTVLIAAS  238 (365)
T ss_dssp             ECTTSSEEEEECSSCE-EEEETT----------------------TCCEEEEECC--CCTTEEEEEEEEEETTEEEEEEE
T ss_pred             EccCCceEEeccceeE-EEEEec----------------------cCcceeeeec--CCCCCCEEEEEEcCCCCEEEEEe
Confidence            9999999988886654 444432                      12211 1111  23778899999999999999997


Q ss_pred             -CC----eEEEEECCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee-cccccCeEE
Q 001258          838 -GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITG  907 (1113)
Q Consensus       838 -dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~  907 (1113)
                       |+    .+++|++.....    ...+.+|...|++++|+| ++++||+|+.|+.|+|||+.+++++..+ .+|...|++
T Consensus       239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~  317 (365)
T 4h5i_A          239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITE  317 (365)
T ss_dssp             ESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEE
T ss_pred             cCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEE
Confidence             65    588899876543    345778999999999999 9999999999999999999999999875 799999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGW  934 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~  934 (1113)
                      |+|+|||++|||+|.|++|+||++...
T Consensus       318 v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          318 VTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-31  Score=292.92  Aligned_cols=287  Identities=18%  Similarity=0.239  Sum_probs=234.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+.+|.+.|++++| |++++|++|+.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~   86 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV   86 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence            58899999999999 999999999999999999998887555   6778999999999999999  89999999999999


Q ss_pred             eCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258          495 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       495 d~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      ++...   +.+..+.+|...|.+++|.    +.++++++.||.|++||  .......+..+...+.++.+.+.       
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-------  153 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQ----DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-------  153 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-------
T ss_pred             EeeecCCCCcccchhhcccCEEEEEec----CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-------
Confidence            98754   5677889999999999972    35899999999999999  44555566667766766666551       


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                                   +++.+++++.|+.|++||  .++....+... +...+.+++|+|++. +++++.||.|++||+.++ 
T Consensus       154 -------------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-  215 (313)
T 3odt_A          154 -------------SENKFLTASADKTIKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-  215 (313)
T ss_dssp             -------------TTTEEEEEETTSCEEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-
T ss_pred             -------------CCCEEEEEECCCCEEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-
Confidence                         334799999999999999  45566666541 245789999999998 889999999999998655 


Q ss_pred             cceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEec
Q 001258          652 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  731 (1113)
Q Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~  731 (1113)
                      +.+..+.                                                                         
T Consensus       216 ~~~~~~~-------------------------------------------------------------------------  222 (313)
T 3odt_A          216 DVLRTYE-------------------------------------------------------------------------  222 (313)
T ss_dssp             CEEEEEE-------------------------------------------------------------------------
T ss_pred             hhhhhhh-------------------------------------------------------------------------
Confidence            1111000                                                                         


Q ss_pred             cCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccc
Q 001258          732 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  811 (1113)
Q Consensus       732 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~  811 (1113)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (313)
T 3odt_A          223 --------------------------------------------------------------------------------  222 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          812 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       812 ~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                          .|...|.+++|+|++. +++++ ||.|++||+.+++....+..|...|.+++|+| +++ +++++.||.|++||+.
T Consensus       223 ----~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          223 ----GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             ----CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred             ----cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence                1566788888888884 55665 89999999999999999999999999999999 777 5569999999999999


Q ss_pred             cceeeeee
Q 001258          891 VDEVKSKL  898 (1113)
Q Consensus       891 ~~~~~~~l  898 (1113)
                      +++.....
T Consensus       296 ~~~~~~~~  303 (313)
T 3odt_A          296 KSRWASED  303 (313)
T ss_dssp             GGGCCC--
T ss_pred             CCceeehh
Confidence            87765443

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-33  Score=314.71  Aligned_cols=315  Identities=7%  Similarity=-0.027  Sum_probs=228.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      -...|.+++|||||+ ++|+++.|++|+  |...++                      .+.+|...|.+++|+|+|    
T Consensus        14 ~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg----   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE----   64 (588)
T ss_dssp             CSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred             hhccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence            357899999999999 599999999999  754443                      246899999999999999    


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc-----C
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P  511 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~-----~  511 (1113)
                         .++.+.+|+.+....+    ++ .|...|.+++|||||+  .|++++.||+|++||...  ++..+. |..     .
T Consensus        65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence               4665555554432211    22 5688999999999999  799999999999999544  667777 765     4


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC-------eeee----eCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDY----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      |.+++|+|  +|++|++|+.||+|++||+.++..       ...+    .+|..                     .+..+
T Consensus       132 v~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~---------------------~V~sV  188 (588)
T 2j04_A          132 YHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD---------------------WVTHI  188 (588)
T ss_dssp             EEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC---------------------CEEEE
T ss_pred             EEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccc---------------------cEEEE
Confidence            99999865  568999999999999999987542       2232    22233                     45555


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +|+|++  +++++.|+.|++||+.++..   ...+.. .+...|.+++|+  |+.|++++ +++|++||+.++......+
T Consensus       189 awSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~-~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~  262 (588)
T 2j04_A          189 VWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN-ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT  262 (588)
T ss_dssp             EEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC-CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC
T ss_pred             EEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc-cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc
Confidence            566666  78889999999999988774   345531 224579999999  68899887 6999999988762211111


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (588)
T 2j04_A          263 --------------------------------------------------------------------------------  262 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcceecccCcccccCceEEEEE--eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  815 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~  815 (1113)
                                 +|...+..++|  +|++..++++..+|+ ++|...                                  
T Consensus       263 -----------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------------------------  296 (588)
T 2j04_A          263 -----------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------------------------  296 (588)
T ss_dssp             -----------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------------------------
T ss_pred             -----------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------------------------
Confidence                       26677888899  999988888888998 888753                                  


Q ss_pred             CCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001258          816 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  879 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~  879 (1113)
                             .++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+++
T Consensus       297 -------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~  349 (588)
T 2j04_A          297 -------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY  349 (588)
T ss_dssp             -------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred             -------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence                   24466666655554 6666666654332 333333 44466666666 666666654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3e-31  Score=303.87  Aligned_cols=295  Identities=16%  Similarity=0.228  Sum_probs=239.9

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      |..+...-+|.+.+.+.++++++.. +++++.||.|++||+.+++....                  ....|...|.+++
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~  141 (401)
T 4aez_A           81 PERVLDAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVK  141 (401)
T ss_dssp             CSEEEECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEE
T ss_pred             cceeeeCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEE
Confidence            4444454567666544444434454 66778899999999999887653                  2334889999999


Q ss_pred             EcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceeeEee
Q 001258          428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFE  506 (1113)
Q Consensus       428 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~~~  506 (1113)
                      |+|++++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++++.|+.|++||+. .+..+..+.
T Consensus       142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~  214 (401)
T 4aez_A          142 WSHDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQ  214 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEc
Confidence            99999999999999999999999988666   678999999999994  45  79999999999999999 567788899


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  586 (1113)
                      +|.+.|.+++|++  ++.+|++++.||.|++||+++......+..+...|.+++|+|++.                    
T Consensus       215 ~~~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------  272 (401)
T 4aez_A          215 GHSSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------  272 (401)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------
T ss_pred             CCCCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------
Confidence            9999999999876  558999999999999999998877777777888888888887765                    


Q ss_pred             CEEEEEe--cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE--CCCcEEEEEcCCCccceeccccccc
Q 001258          587 NRFLAAG--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       587 ~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                      ..+++++  .|+.|++||+.+++.+..+..+   ..|.+++|+|+++++++++  .||.|++|++.++ ......     
T Consensus       273 ~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~-----  343 (401)
T 4aez_A          273 NLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV-----  343 (401)
T ss_dssp             TEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-----
T ss_pred             CEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-----
Confidence            2355554  7999999999999999888643   3699999999999999954  8999999998765 111110     


Q ss_pred             cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258          663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  742 (1113)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  742 (1113)
                                                                                         .+           
T Consensus       344 -------------------------------------------------------------------~~-----------  345 (401)
T 4aez_A          344 -------------------------------------------------------------------DI-----------  345 (401)
T ss_dssp             -------------------------------------------------------------------EE-----------
T ss_pred             -------------------------------------------------------------------Ee-----------
Confidence                                                                               00           


Q ss_pred             cccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          743 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                           .+|...|.+++|+|+++.|++++.||.|++|++..
T Consensus       346 -----~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          346 -----PAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             -----ECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             -----cCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence                 12667899999999999999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=5.6e-32  Score=304.30  Aligned_cols=295  Identities=10%  Similarity=0.069  Sum_probs=218.3

Q ss_pred             cCceEEEEEeCCCceEEEeecC-------CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          751 ATKISRLIFTNSGNAILALASN-------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~d-------g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                      ..+|.+++|+||++.|++|+.+       +.|++|++..............             ....+.  .|...+.+
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~-------------~~~~l~--~~~~~v~s   78 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHIL-------------SEFALE--DNDDSPTA   78 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEE-------------EEEECC--TTSCCCCE
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeee-------------eEEEcc--CCCCceEE
Confidence            3579999999999999998764       3599998864322111000000             001122  26777877


Q ss_pred             EEEecCCCEEEEEe------------CCeEEEEECCCCceeee---------ecCCCCCeeEEEEecCCCcEEEEE--ec
Q 001258          824 FALSKNDSYVMSAS------------GGKISLFNMMTFKTMAT---------FMPPPPAATFLAFHPQDNNIIAIG--MD  880 (1113)
Q Consensus       824 l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~---------~~~~~~~i~~l~~s~~d~~~la~g--~~  880 (1113)
                      +++  +++.+++|.            |+++++|++........         ...+...+.+++||| ||+++|++  +.
T Consensus        79 ~~~--~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSp-Dg~~la~as~~~  155 (365)
T 4h5i_A           79 IDA--SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISR-EGTVAAIASSKV  155 (365)
T ss_dssp             EEE--ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECT-TSSCEEEEESCS
T ss_pred             EEe--CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcC-CCCEEEEEECCC
Confidence            765  556676652            56799999875432211         122345688999999 88887654  47


Q ss_pred             CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258          881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  960 (1113)
Q Consensus       881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  960 (1113)
                      |+.|+|||+.+++++..+. |.+.|++|+|+|||++|++++.|+ +++|+..+++...   .....++.   ..+.+++|
T Consensus       156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~---~~~~~~~~---~~v~~v~f  227 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIA---RKTDFDKN---WSLSKINF  227 (365)
T ss_dssp             SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEE---EECCCCTT---EEEEEEEE
T ss_pred             CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEeccCccee---eeecCCCC---CCEEEEEE
Confidence            8999999999999988886 778899999999999999998655 6667666654322   12222333   36899999


Q ss_pred             ccCCcEEEE-EcCC----eEEEEeCCcccee--eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          961 HQDQIHFLV-VHET----QLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       961 spdg~~l~~-~~d~----~v~v~d~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +|+|.++++ +.++    .+++|++......  ......+|...|++++|+|||++||+|+.|++|+|||+.+++.+..+
T Consensus       228 spdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          228 IADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             EETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence            999999998 4554    5888888766432  22233478899999999999999999999999999999999988764


Q ss_pred             CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .      .+|...|+.  ++|+| ||++||+|+.|++|+||+++...
T Consensus       308 ~------~gH~~~V~~--v~fSp-dg~~laS~S~D~tvrvw~ip~~~  345 (365)
T 4h5i_A          308 K------QAHSFAITE--VTISP-DSTYVASVSAANTIHIIKLPLNY  345 (365)
T ss_dssp             T------TSSSSCEEE--EEECT-TSCEEEEEETTSEEEEEECCTTT
T ss_pred             c------CcccCCEEE--EEECC-CCCEEEEEeCCCeEEEEEcCCCC
Confidence            2      289999985  99999 89999999999999999997544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9e-31  Score=301.82  Aligned_cols=298  Identities=15%  Similarity=0.230  Sum_probs=226.4

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      .++.|+||++ ++||+|. |++|+|||..+|+..+ ...+.+|...|++|+|+|+|+  +|++|+.|++|+|||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            5678999986 4777775 9999999999998664 335668889999999999999  899999999999999999999


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe-eeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      +..+.+|...+.+++++    +.++++|+.|+.+++||....... ..+..|...+..+.+++++               
T Consensus       182 ~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---------------  242 (420)
T 4gga_A          182 LRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---------------  242 (420)
T ss_dssp             EEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---------------
T ss_pred             EEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---------------
Confidence            99999999999998863    368999999999999998865443 3455566656555555555               


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCCC-CEEEEE--ECCCcEEEEEcCCCccc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIRL  653 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~  653 (1113)
                            .++++++.|+.+++|+..+++.    +.....+  ...|.+++|+|++ .+++++  +.|++|++||+.++ ..
T Consensus       243 ------~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~~  313 (420)
T 4gga_A          243 ------RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-AC  313 (420)
T ss_dssp             ------SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-EE
T ss_pred             ------CeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-cc
Confidence                  4799999999999999987653    3344433  4578999999954 555554  46899999988766 11


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ...+.                                                                           
T Consensus       314 ~~~~~---------------------------------------------------------------------------  318 (420)
T 4gga_A          314 LSAVD---------------------------------------------------------------------------  318 (420)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             ceeec---------------------------------------------------------------------------
Confidence            11100                                                                           


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                                                                                      
T Consensus       319 --------------------------------------------------------------------------------  318 (420)
T 4gga_A          319 --------------------------------------------------------------------------------  318 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                         +...+.++.|+++++.+++++   |+.|+|||+.+++++.++.+|...|++++|+| ++++||+|+.||+|+|||+.
T Consensus       319 ---~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          319 ---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             ---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECCS
T ss_pred             ---cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEECC
Confidence               233456677788888777664   78999999999999999999999999999999 89999999999999999998


Q ss_pred             cceeeeeecccccCeEEEEEc
Q 001258          891 VDEVKSKLKGHSKRITGLAFS  911 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~~l~~s  911 (1113)
                      ..........+...+....|.
T Consensus       395 ~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          395 ELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             CSSCC----------------
T ss_pred             CCCccchhhhccCCccccccC
Confidence            776666666565555444443

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.2e-31  Score=287.79  Aligned_cols=223  Identities=16%  Similarity=0.270  Sum_probs=180.3

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  492 (1113)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ....++.+|.+.|++++|+++  ++  +|++|+.|++|+
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~   80 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM   80 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence            4789999999999999999999999999999999975421 123378899999999999874  67  799999999999


Q ss_pred             EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258          493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      +||+.+++  .+..+.+|...|.+++|++..++.+|++++.||.|++||+++...  ...+..|...|.+++|+|++...
T Consensus        81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (297)
T ss_dssp             EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence            99999874  567788899999999998875568999999999999999987532  34567788889999999875311


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc----eEEEEccCCCCCCcCeEEECCCC---CEEEEEECCCc
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNG  641 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~  641 (1113)
                      ...        ....+++++|++|+.|+.|++||+.+++    ....+..|  ...|.+++|+|++   .+|++++.|++
T Consensus       161 ~~~--------~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~  230 (297)
T 2pm7_B          161 DGE--------HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRT  230 (297)
T ss_dssp             -----------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             ccc--------CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCc
Confidence            000        0112345689999999999999998766    45556555  5589999999984   89999999999


Q ss_pred             EEEEEcCCC
Q 001258          642 IKILATSDG  650 (1113)
Q Consensus       642 i~iwd~~~~  650 (1113)
                      |++||+.++
T Consensus       231 v~iWd~~~~  239 (297)
T 2pm7_B          231 CIIWTQDNE  239 (297)
T ss_dssp             EEEEEESST
T ss_pred             EEEEEeCCC
Confidence            999998654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.1e-32  Score=311.30  Aligned_cols=294  Identities=14%  Similarity=0.165  Sum_probs=221.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      +...|.+++|+|++++|++++.|+.|++|++.....                    .. ...+.  +|...|.+++|+|+
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~--------------------~~-~~~~~--~h~~~v~~~~~s~~   66 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW--------------------KH-ARTFS--DHDKIVTCVDWAPK   66 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE--------------------EE-CCCBC--CCSSCEEEEEECTT
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce--------------------EE-EEEEe--cCCceEEEEEEeCC
Confidence            557899999999999999999999999999863210                    01 11122  38899999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCc---eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce---eeeeecc-c
Q 001258          830 DSYVMSAS-GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKG-H  901 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~---~~~~l~~-h  901 (1113)
                      +++|++++ |++|++||+.+++   ....+..|...|.+++|+| ++++|++|+.|+.|++||+.+++   ....+.+ |
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h  145 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL  145 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSC
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeeccc
Confidence            99999999 8999999999876   6677888999999999999 89999999999999999999876   4678887 9


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc-------------ccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK-------------NRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~-------------~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                      ...|++++|+|++++|++++.|++|++||+...+...             ..+.... +|.   ..|.+++|+|+|++|+
T Consensus       146 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          146 RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEE
T ss_pred             CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEE
Confidence            9999999999999999999999999999996432111             1122222 333   4799999999999999


Q ss_pred             E-EcCCeEEEEeCCccce----eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc--eeeecCC------
Q 001258          969 V-VHETQLAIFETTKLEC----VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK--LRCRINP------ 1035 (1113)
Q Consensus       969 ~-~~d~~v~v~d~~~~~~----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~--~~~~~~~------ 1035 (1113)
                      + +.|+.|++||+.+++.    +..+.  +|...|.+++|+||+++|++++.|+.+ +|+.....  ....+..      
T Consensus       222 ~~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  298 (377)
T 3dwl_C          222 YAGHDSSVTIAYPSAPEQPPRALITVK--LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS  298 (377)
T ss_dssp             EEETTTEEC-CEECSTTSCEEECCCEE--CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred             EEeCCCcEEEEECCCCCCcceeeEeec--CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence            8 5899999999999987    55554  789999999999999999999866666 66664221  1111110      


Q ss_pred             -------------------------------------CcccCCCcccCccceEEEEeCCCCC---EEEEEeCCCcEEEEe
Q 001258         1036 -------------------------------------SAYLPAGVSSNVHPLVIAAHPQEPN---EFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1036 -------------------------------------~~~~~~gh~~~v~~i~~~~~p~d~~---~l~s~~~Dg~v~vW~ 1075 (1113)
                                                           ......+|.+.|..  +.+.+.++.   .|+|++.||.|++||
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~--~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIAT--LRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEE--EEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccccccccccccccccccccccccccchhhccccccccccCccccceeEE--EeccCCCCCceEEEEeecCCCcEEEec
Confidence                                                 00112248888886  555553444   799999999999998


Q ss_pred             c
Q 001258         1076 P 1076 (1113)
Q Consensus      1076 ~ 1076 (1113)
                      +
T Consensus       377 l  377 (377)
T 3dwl_C          377 L  377 (377)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.3e-30  Score=288.62  Aligned_cols=283  Identities=18%  Similarity=0.270  Sum_probs=218.3

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      ..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|++++|+|+++  ++++|+.|++|++||++++++
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence            35789999986 77766 599999999999987653 24568889999999999999  799999999999999999999


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +..+.+|...+.++.+  .+  .++++++.++.+++|+.....                                     
T Consensus       102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~-------------------------------------  140 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE-------------------------------------  140 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred             EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence            9999999998887663  22  477888888877777655311                                     


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccc
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  661 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  661 (1113)
                                               ..+..+..|  ...+..+.++++++++++++.|+.|++||+.++.........  
T Consensus       141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  191 (318)
T 4ggc_A          141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--  191 (318)
T ss_dssp             -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred             -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence                                     112223333  346788999999999999999999999998776211100000  


Q ss_pred             ccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258          662 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  741 (1113)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  741 (1113)
                                                                                           .          
T Consensus       192 ---------------------------------------------------------------------~----------  192 (318)
T 4ggc_A          192 ---------------------------------------------------------------------F----------  192 (318)
T ss_dssp             ---------------------------------------------------------------------E----------
T ss_pred             ---------------------------------------------------------------------e----------
Confidence                                                                                 0          


Q ss_pred             ecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258          742 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  821 (1113)
Q Consensus       742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v  821 (1113)
                            .                                                                   .+...|
T Consensus       193 ------~-------------------------------------------------------------------~~~~~v  199 (318)
T 4ggc_A          193 ------T-------------------------------------------------------------------QHQGAV  199 (318)
T ss_dssp             ------C-------------------------------------------------------------------CCCSCE
T ss_pred             ------c-------------------------------------------------------------------ccCCce
Confidence                  0                                                                   033445


Q ss_pred             cEEEEecCCCEEE---EEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCCcEEEEEcccceee
Q 001258          822 PCFALSKNDSYVM---SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       822 ~~l~~s~~~~~l~---~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg~v~iwd~~~~~~~  895 (1113)
                      .+++++|++..++   +++ +++|++||........... +...+..+.|+| ++..+++++  .|+.|+|||+.+++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence            5555555444322   233 6889999998877666554 566799999999 666665544  7999999999999999


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      ..+.+|.+.|++++|+||+++|+|+|.|++|+|||+..
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            99999999999999999999999999999999999876

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.5e-31  Score=306.70  Aligned_cols=274  Identities=12%  Similarity=0.181  Sum_probs=201.0

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC------------cc
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS  422 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~  422 (1113)
                      +.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.......       .. ......+.+|.            +.
T Consensus        25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~-------~~-~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR-------GE-YNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC-------CC-EEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc-------cc-eeEecccccccccccccccccccCc
Confidence            457899999999999995 99999999999999998763110000       00 00011467887            88


Q ss_pred             eEEEEEcCCC--CeEEEEeCCCeEEEEEccCCceee------------------------------------eeee-eec
Q 001258          423 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA  463 (1113)
Q Consensus       423 V~~l~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~~~-l~~  463 (1113)
                      |.+++|+|++  .+|++++.|++|++||+.++....                                    .... ..+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  899999999999999998754311                                    0012 368


Q ss_pred             ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-Cceee-------EeeccCcCEEEEeeeecCCceEEEEEecCCcE
Q 001258          464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  535 (1113)
Q Consensus       464 h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-~~~~~-------~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i  535 (1113)
                      |...|.+++|+|+++  +|++| .|++|++||+.+ ++.+.       .+.+|...|.+++|++... .+|++|+.||.|
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~s~~~dg~i  251 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC-NTFVYSSSKGTI  251 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT-TEEEEEETTSCE
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC-cEEEEEeCCCeE
Confidence            999999999999999  78888 799999999984 44444       2568999999999876431 699999999999


Q ss_pred             EEEEcCCCCC----eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEE
Q 001258          536 KAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLT  610 (1113)
Q Consensus       536 ~iwd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~  610 (1113)
                      ++||+++...    ...+..+....        .... ...+...+..++|+|++.+|++++. +.|++||+.+ ++++.
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~  321 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPS--------NRSF-FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVE  321 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-------------CCH-HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSC
T ss_pred             EEEECcCCccccceeeEeccCCCcc--------cccc-ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccc
Confidence            9999998765    44555444300        0000 0011124555555666668999888 9999999997 88888


Q ss_pred             EEccCCCCCC-------------cCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          611 SIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       611 ~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                      .+..+.....             +..++|+|++++|++++.||.|++||+.++.
T Consensus       322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence            8876642111             2349999999999999999999999999873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.7e-29  Score=325.25  Aligned_cols=445  Identities=10%  Similarity=0.005  Sum_probs=314.2

Q ss_pred             CCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------CCcEE
Q 001258          419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIK  492 (1113)
Q Consensus       419 h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~  492 (1113)
                      +.+.+.+.+|||  ++||.++. +.|.+|++.+++..    .+.+|...|.+++|||||+  .|++++.      +..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456899999995  58888775 68999999988643    4778999999999999999  5665543      34799


Q ss_pred             EEeCCCCceeeEeeccCcCE-------EEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEE
Q 001258          493 VWDATNGAKQYIFEGHEAPV-------YSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTM  559 (1113)
Q Consensus       493 iwd~~~~~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~  559 (1113)
                      +||+.+++ ...+..|...+       ..++|++  ||+++++++.+      ..|..|++..+... .+...  ....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~-~l~~~--~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFV-PLNLG--PATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEE-ECCSC--SCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeE-EecCC--Cccee
Confidence            99988776 57788888888       8888875  44677777754      35777777654322 11111  11223


Q ss_pred             EEccCCCeEEeccccCceeEEEecCCCCEEEEEec------------CCcEEEEECCCCceEEEEccCCCCCCcCeEEEC
Q 001258          560 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN  627 (1113)
Q Consensus       560 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  627 (1113)
                      +                     |+| | .+++++.            +...++|....+.....+..+  ...+.++.|+
T Consensus       158 ~---------------------~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~--~~~v~~~~~s  212 (1045)
T 1k32_A          158 L---------------------FAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM--STHVSSPVIV  212 (1045)
T ss_dssp             E---------------------EET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC--SSCCEEEEEE
T ss_pred             e---------------------eCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCC--CCcccceEEe
Confidence            3                     444 4 4555532            334556653333444455444  4578999999


Q ss_pred             CCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCC
Q 001258          628 KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD  707 (1113)
Q Consensus       628 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  707 (1113)
                      ++ .++++++.++.+.+|.+.......+.+..                                                
T Consensus       213 ~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~------------------------------------------------  243 (1045)
T 1k32_A          213 GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS------------------------------------------------  243 (1045)
T ss_dssp             TT-EEEEEECTTSSCEEEEEETTSCSCEECCC------------------------------------------------
T ss_pred             CC-EEEEEEeccCceEEEEEeCCCCcceEecC------------------------------------------------
Confidence            98 67777888899999976532111111100                                                


Q ss_pred             ccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCC
Q 001258          708 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS  787 (1113)
Q Consensus       708 ~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~  787 (1113)
                                                                + ..+...+|+|||+.++.+ .++.+++|++.....  
T Consensus       244 ------------------------------------------~-~~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l--  277 (1045)
T 1k32_A          244 ------------------------------------------F-TDYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI--  277 (1045)
T ss_dssp             ------------------------------------------C-CSSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE--
T ss_pred             ------------------------------------------C-CCcceeeEcCCCCEEEEE-eCCEEEEecCCceEe--
Confidence                                                      1 123456899999988776 588999998631110  


Q ss_pred             CCceeeeecCeecCCCCcc-ccccccCCCCCCCCccEEEEe-cCCCEEEEEeCCeEEEEECCCCceeeeecCCCC-CeeE
Q 001258          788 SGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPP-AATF  864 (1113)
Q Consensus       788 ~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~~~v~~l~~s-~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~-~i~~  864 (1113)
                           .       .+.... ......  ..+...+.+++|+ |||++|++++++.|.+|++.++... .+..+.. .+..
T Consensus       278 -----~-------~l~~~~~~~~~~~--~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~  342 (1045)
T 1k32_A          278 -----E-------KIEIGDLESPEDR--IISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-KVPEPLRIRYVR  342 (1045)
T ss_dssp             -----E-------ECCCCCCCBCCSE--EEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEE-ECSCCSCEEEEE
T ss_pred             -----e-------eeccCcccccccc--cccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceE-EccCCCcceEEe
Confidence                 0       000000 000000  0145578999999 9999999999999999999877654 4566666 7999


Q ss_pred             EEEecCCCcEEEEEecCCcEE-EEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258          865 LAFHPQDNNIIAIGMDDSSIQ-IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  943 (1113)
Q Consensus       865 l~~s~~d~~~la~g~~dg~v~-iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~  943 (1113)
                      ++|+  |++.|++++.++.+. +||+.+++.. .+.+|...+..++|+|||++|++++.++.|++||+.+++...     
T Consensus       343 ~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~-----  414 (1045)
T 1k32_A          343 RGGD--TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV-----  414 (1045)
T ss_dssp             ECSS--SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-----
T ss_pred             eeEc--CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE-----
Confidence            9999  677888888888898 9999877654 444888899999999999999999999999999999865422     


Q ss_pred             cCCCCCCCCCCCceEEEccCCcEEEEE-cC----------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          944 IPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       944 ~~~~~~~~~~~i~~~~~spdg~~l~~~-~d----------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      ...++.   ..+..++|||||++|+++ .+          +.|++||+.+++ +..+.  .|...+.+++|+|||++|++
T Consensus       415 ~~~~~~---~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~--~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          415 IERSRE---AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT--TENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             EEECSS---SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS--CSSSBEEEEEECTTSCEEEE
T ss_pred             eccCCC---CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee--CCCcccCCceEcCCCCEEEE
Confidence            222222   367899999999999884 43          389999999887 34433  56778899999999999999


Q ss_pred             EeCCCcEEEEecCCC
Q 001258         1013 CFLDATVCVFSAANL 1027 (1113)
Q Consensus      1013 ~~~Dg~v~vwd~~~~ 1027 (1113)
                      ++.++...+|+....
T Consensus       489 ~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          489 LSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             EESCCCCCEECSSSS
T ss_pred             EecccCCcCcchhcc
Confidence            999888888876543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-30  Score=298.90  Aligned_cols=287  Identities=15%  Similarity=0.183  Sum_probs=222.9

Q ss_pred             CCCcc--eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          418 DPGVS--VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       418 ~h~~~--V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      +|...  +.+++|++  ..+++++.|+.|++||+.+++...   .+. .|...|.+++|+|+++  +|++|+.||.|++|
T Consensus        89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw  161 (401)
T 4aez_A           89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY  161 (401)
T ss_dssp             TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred             CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence            55544  45566664  568888999999999999998665   233 3899999999999999  79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      |+.+++.+..+.+|...|.+++|+    +.++++++.||.|++||++. ......+..+...|.+++|+|++.       
T Consensus       162 d~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------  230 (401)
T 4aez_A          162 DVESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-------  230 (401)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-------
T ss_pred             ECcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-------
Confidence            999999999999999999999983    25899999999999999984 344455666666666666666554       


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC-CEEEEEE--CCCcEEEEEcCCC
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVST--NDNGIKILATSDG  650 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~--~dg~i~iwd~~~~  650 (1113)
                                    ++++++.|+.|++||+.+++.+..+..+  ...|.+++|+|++ .++++++  .|+.|++||+.++
T Consensus       231 --------------~l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~  294 (401)
T 4aez_A          231 --------------QLASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG  294 (401)
T ss_dssp             --------------EEEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred             --------------EEEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence                          7999999999999999999998888765  4579999999976 5566654  6999999998765


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                       +.+..+.                                                                        
T Consensus       295 -~~~~~~~------------------------------------------------------------------------  301 (401)
T 4aez_A          295 -ARVNTVD------------------------------------------------------------------------  301 (401)
T ss_dssp             -CEEEEEE------------------------------------------------------------------------
T ss_pred             -CEEEEEe------------------------------------------------------------------------
Confidence             1111100                                                                        


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                                                                      
T Consensus       302 --------------------------------------------------------------------------------  301 (401)
T 4aez_A          302 --------------------------------------------------------------------------------  301 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEecCCcEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  885 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~  885 (1113)
                            +...|.+++|+|+++++++++   ||.|++||+.+++..  ..+.+|...|.+++|+| ++++|++++.||.|+
T Consensus       302 ------~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~  374 (401)
T 4aez_A          302 ------AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLK  374 (401)
T ss_dssp             ------CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEE
T ss_pred             ------CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEE
Confidence                  233466677777777777632   678888888775443  34678999999999999 899999999999999


Q ss_pred             EEEcccceeeeee
Q 001258          886 IYNVRVDEVKSKL  898 (1113)
Q Consensus       886 iwd~~~~~~~~~l  898 (1113)
                      +|++.+++.+...
T Consensus       375 iw~~~~~~~~~~~  387 (401)
T 4aez_A          375 FWRVYDGDHVKRP  387 (401)
T ss_dssp             EEECCC-------
T ss_pred             EEECCCCcccccc
Confidence            9999998876554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.7e-31  Score=294.40  Aligned_cols=226  Identities=19%  Similarity=0.299  Sum_probs=175.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  492 (1113)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|++++|+++  +.  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            57899999999999999999999999999999999987532 23478899999999999864  66  799999999999


Q ss_pred             EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC---eeeeeCCCCceEEEEEccCCCe
Q 001258          493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      +||++++.  .+..+.+|...|.+++|++..++.+|++|+.||.|++||++....   ...+..|...+.+++|+|++..
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99999874  567788999999999999876678999999999999999987533   2344567778888899887420


Q ss_pred             E-EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC---ceEEEEccCCCCCCcCeEEECCCC----CEEEEEECC
Q 001258          568 T-YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND  639 (1113)
Q Consensus       568 ~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d  639 (1113)
                      - +..+..+     .....+.+|++++.|+.|++||+..+   +.+..+..|  ...|.+++|+|++    ++|++++.|
T Consensus       165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence            0 0000000     01122468999999999999999755   344445544  5689999999986    899999999


Q ss_pred             CcEEEEEcCCC
Q 001258          640 NGIKILATSDG  650 (1113)
Q Consensus       640 g~i~iwd~~~~  650 (1113)
                      ++|++|++.+.
T Consensus       238 ~~v~iw~~~~~  248 (316)
T 3bg1_A          238 GRVFIWTCDDA  248 (316)
T ss_dssp             CEEEEEECSST
T ss_pred             CeEEEEEccCc
Confidence            99999998653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.1e-30  Score=296.26  Aligned_cols=286  Identities=17%  Similarity=0.264  Sum_probs=236.0

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ..-.+..++|++++ .| +.+.|++|+|||..                      +|.+... +...+|...|++++|+|+
T Consensus       104 ~d~y~~~l~wS~~n-~l-Avgld~tV~lWd~~----------------------tg~~~~~-~~~~~~~~~V~sv~fspd  158 (420)
T 4gga_A          104 NDYYLNLVDWSSGN-VL-AVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKE  158 (420)
T ss_dssp             CCTTCBCEEECTTS-EE-EEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTT
T ss_pred             ccccceeEEECCCC-EE-EEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCcEEEEEECCC
Confidence            34456778999764 44 45568999998865                      3332221 122237888999999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITG  907 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~  907 (1113)
                      |++|++|+ ||+|++||+.+++++..+.+|...+.+++++   +.+|++|+.|+.+++||... ...+..+.+|...+..
T Consensus       159 g~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~  235 (420)
T 4gga_A          159 GNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG  235 (420)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred             CCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceee
Confidence            99999999 9999999999999999999999999988875   47999999999999999886 4556788999999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE-EEE---cCCeEEEEeCCcc
Q 001258          908 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF-LVV---HETQLAIFETTKL  983 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l-~~~---~d~~v~v~d~~~~  983 (1113)
                      +.|+++++++++++.|+.|++|++.+++.... .......+.   ..|..++|+|++..+ +++   .|+.|++||+.++
T Consensus       236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~-~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~  311 (420)
T 4gga_A          236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWV-PLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG  311 (420)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESSCCSSCSC-CSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT
T ss_pred             eeecCCCCeeeeeeccccceEEeeccccccce-eeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc
Confidence            99999999999999999999999988654322 122223333   478999999976644 442   6899999999999


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEe--CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
                      ++...+..   ...+.++.|+++++.+++++  .|+.|+|||+.+++.+..+.       ||.+.|..  ++|+| ||.+
T Consensus       312 ~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~--l~~sp-dg~~  378 (420)
T 4gga_A          312 ACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLS--LTMSP-DGAT  378 (420)
T ss_dssp             EEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEE--EEECT-TSSC
T ss_pred             ccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEc-------CCCCCEEE--EEEcC-CCCE
Confidence            99888753   56899999999999988765  79999999999999999887       99999985  88999 7899


Q ss_pred             EEEEeCCCcEEEEeccCCC
Q 001258         1062 FALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1062 l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |+||+.||+|+|||+.+.+
T Consensus       379 l~S~s~D~tvriWdv~~~~  397 (420)
T 4gga_A          379 VASAAADETLRLWRCFELD  397 (420)
T ss_dssp             EEEEETTTEEEEECCSCSS
T ss_pred             EEEEecCCeEEEEECCCCC
Confidence            9999999999999998755

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=9.1e-32  Score=296.63  Aligned_cols=254  Identities=16%  Similarity=0.199  Sum_probs=202.3

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--CCC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  433 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  433 (1113)
                      +|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++....                 ..+.+|.+.|++++|+|  +++
T Consensus        11 ~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~~   72 (316)
T 3bg1_A           11 SHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYGN   72 (316)
T ss_dssp             ---CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGSS
T ss_pred             cccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCCC
Confidence            59999999999999995 99999999999999987753211                 14779999999999987  489


Q ss_pred             eEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCce---eeEeecc
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEGH  508 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h  508 (1113)
                      +|++|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+..+..   ...+.+|
T Consensus        73 ~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h  149 (316)
T 3bg1_A           73 ILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAH  149 (316)
T ss_dssp             CEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSS
T ss_pred             EEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccc
Confidence            9999999999999999987422 23367899999999999998  56  799999999999999987632   3556789


Q ss_pred             CcCEEEEeeeecC---------------CceEEEEEecCCcEEEEEcCCCC---CeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          509 EAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       509 ~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      ...|.+++|++..               ++.+|++|+.|+.|++||++...   ....+..|...|.+++|+|++.    
T Consensus       150 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~----  225 (316)
T 3bg1_A          150 TIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG----  225 (316)
T ss_dssp             SSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS----
T ss_pred             cCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC----
Confidence            9999999988752               14689999999999999997542   3345666777777777777652    


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc----eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  646 (1113)
                                   .++.+|++++.|++|++|++.+..    ....+..+  ...|.+++|+|++++|++++.|+.|++|+
T Consensus       226 -------------~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          226 -------------LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             -------------CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             -------------CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence                         012469999999999999987631    12223333  45799999999999999999999999999


Q ss_pred             cCC
Q 001258          647 TSD  649 (1113)
Q Consensus       647 ~~~  649 (1113)
                      ...
T Consensus       291 ~~~  293 (316)
T 3bg1_A          291 ESV  293 (316)
T ss_dssp             ECT
T ss_pred             ECC
Confidence            753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=3.7e-30  Score=289.11  Aligned_cols=226  Identities=12%  Similarity=0.130  Sum_probs=180.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcC--CCCeeEEEEecCCCcE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI  491 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--~~~~~~l~s~s~d~~i  491 (1113)
                      ++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|.+++|+|  ++.  +|++++.|++|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            67899999999999999999999999999999999976432 33446789999999999999  577  79999999999


Q ss_pred             EEEeCCCC---------ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEc
Q 001258          492 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  562 (1113)
Q Consensus       492 ~iwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s  562 (1113)
                      ++||+.++         +++..+.+|...|.+++|++..++.++++++.||.|++||+++......+... ..+..+.+.
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence            99999887         55778889999999999987643679999999999999999887655433210 001111111


Q ss_pred             cCCCeEEeccccCceeEEEecCC---CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC----CEEEE
Q 001258          563 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV  635 (1113)
Q Consensus       563 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~  635 (1113)
                      +.       .+...+.+++|+|+   +..+++++.++.+.+|+...++.........+...|.+++|+|++    ++|++
T Consensus       163 ~~-------~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          163 PA-------NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CS-------SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             cC-------CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence            11       12335666777775   778999999999999988887764343334456689999999998    89999


Q ss_pred             EECCCcEEEEEcCCC
Q 001258          636 STNDNGIKILATSDG  650 (1113)
Q Consensus       636 ~~~dg~i~iwd~~~~  650 (1113)
                      ++.||.|++||+.++
T Consensus       236 ~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          236 GCKDGRIRIFKITEK  250 (351)
T ss_dssp             EETTSCEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCC
Confidence            999999999998765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=279.56  Aligned_cols=283  Identities=17%  Similarity=0.281  Sum_probs=231.7

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      ....++||+++  +++++.|++|+|||+.                      +|+.+.. +...+|...|.+++|+|++++
T Consensus        27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~   81 (318)
T 4ggc_A           27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY   81 (318)
T ss_dssp             TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred             cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence            34678999886  4455669999998865                      3333221 222348889999999999999


Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc-eeeeeecccccCeEEEEE
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAF  910 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~  910 (1113)
                      |++|+ ||+|++||+.+++++..+.+|...+.++.+.   +.++++|+.++.+++|+.... ..+..+.+|...+..+.+
T Consensus        82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999 9999999999999999999999888776654   579999999999999998875 556788999999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE---E-cCCeEEEEeCCcccee
Q 001258          911 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECV  986 (1113)
Q Consensus       911 s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~---~-~d~~v~v~d~~~~~~~  986 (1113)
                      ++++++|++++.|++|++||+.+++........ ...+.   ..+..++++|++..++.   + .++.|++||.......
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            999999999999999999999986543322221 22222   46889999998765443   2 6789999999988876


Q ss_pred             eccccCCCCCCeeEEEECCCCCEEEEEe--CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          987 KQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       987 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~--~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                      ...   .|...+..++|++++..+++++  .|+.|+|||+.+++.+..+.       +|.+.|+.  ++|+| ||++|++
T Consensus       235 ~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~--l~~sp-dg~~l~S  301 (318)
T 4ggc_A          235 SAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSRVLS--LTMSP-DGATVAS  301 (318)
T ss_dssp             EEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSCEEE--EEECT-TSSCEEE
T ss_pred             ccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCCEEE--EEEcC-CCCEEEE
Confidence            665   3577899999999999988765  79999999999999999887       99999985  88999 7899999


Q ss_pred             EeCCCcEEEEeccCCC
Q 001258         1065 GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1065 ~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |+.||+|+|||+.+.+
T Consensus       302 ~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          302 AAADETLRLWRCFELD  317 (318)
T ss_dssp             EETTTEEEEECCSCCC
T ss_pred             EecCCeEEEEECCCCC
Confidence            9999999999997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=8.5e-30  Score=285.41  Aligned_cols=294  Identities=13%  Similarity=0.106  Sum_probs=230.1

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      +..+|.+.|++++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence            45689999999999999999999999999999999988732233356689999999999999882 38899999999999


Q ss_pred             eC-CCCceeeEeec--cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC---------CCCeeeeeCCCCceEEEEEc
Q 001258          495 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS  562 (1113)
Q Consensus       495 d~-~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~s  562 (1113)
                      |+ .+++. ..+.+  |...|.+++|++   +.++++++.|+.|++||+++         ......+. +...+.++   
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~---  156 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM---  156 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE---
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE---
Confidence            99 77754 77888  999999999987   46999999999999999986         44333333 34444444   


Q ss_pred             cCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECC-CCCEEEEEECCC
Q 001258          563 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN  640 (1113)
Q Consensus       563 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  640 (1113)
                                        +|+|++  +++++.++.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus       157 ------------------~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          157 ------------------DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             ------------------EECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             ------------------EecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence                              444444  88999999999999988 55432222223345789999999 999999999999


Q ss_pred             cEEEEEcCCC-----ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258          641 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  715 (1113)
Q Consensus       641 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (1113)
                      .|++|++...     ......+..|..                                                     
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------  243 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRL-----------------------------------------------------  243 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred             cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence            9999998654     011111110000                                                     


Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeee
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  795 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  795 (1113)
                                                           .                                          
T Consensus       244 -------------------------------------~------------------------------------------  244 (342)
T 1yfq_A          244 -------------------------------------N------------------------------------------  244 (342)
T ss_dssp             -------------------------------------C------------------------------------------
T ss_pred             -------------------------------------c------------------------------------------
Confidence                                                 0                                          


Q ss_pred             cCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001258          796 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN  873 (1113)
Q Consensus       796 ~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~  873 (1113)
                                      ..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++  | +++
T Consensus       245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~  305 (342)
T 1yfq_A          245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN  305 (342)
T ss_dssp             ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred             ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence                            00012677899999999999999998 899999999999999999998 99999999  7 899


Q ss_pred             EEEEEecCCc-EEEEE
Q 001258          874 IIAIGMDDSS-IQIYN  888 (1113)
Q Consensus       874 ~la~g~~dg~-v~iwd  888 (1113)
                      +|++|+.||. .+.|.
T Consensus       306 ~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          306 ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECTHHHHCSS
T ss_pred             eEEEEecCCccccccc
Confidence            9999999998 44444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=7.6e-30  Score=288.96  Aligned_cols=300  Identities=16%  Similarity=0.167  Sum_probs=234.4

Q ss_pred             cccCCCcceEEEEEcCC---CCeEEEEeCCCeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc
Q 001258          415 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  490 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~  490 (1113)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.  ..+.+|...|.+++|+|+++  +|++++.|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence            57899999999999999   69999999999999999997 44332  36778999999999999999  7999999999


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      |++||+.+++.+. +.+|...|.+++|++.+++.+|++++.||.|++||+++......+..+. .+.++.+.        
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~--------  179 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI--------  179 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--------
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--------
Confidence            9999999988766 5669999999999777888999999999999999999877776665543 23333322        


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCE----EEEEECCCcEEEEE
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA  646 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd  646 (1113)
                                     ...+++++.++.+++|++.................+.++++.++...    +++++.||.|++|+
T Consensus       180 ---------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          180 ---------------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             ---------------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             ---------------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence                           23588899999999999988765544433333335566776665544    99999999999999


Q ss_pred             cCCCcc--ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCC
Q 001258          647 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  724 (1113)
Q Consensus       647 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  724 (1113)
                      +.....  ....+.+|...                                                             
T Consensus       245 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  263 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSN-------------------------------------------------------------  263 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred             cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence            876521  11111111000                                                             


Q ss_pred             ceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCC
Q 001258          725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  804 (1113)
Q Consensus       725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~  804 (1113)
                                                            +.  .                                     
T Consensus       264 --------------------------------------~~--~-------------------------------------  266 (368)
T 3mmy_A          264 --------------------------------------GT--N-------------------------------------  266 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------cc--c-------------------------------------
Confidence                                                  00  0                                     


Q ss_pred             ccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc
Q 001258          805 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  883 (1113)
Q Consensus       805 g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~  883 (1113)
                             .....|...|.+++|+|++++|++++ ||.|++||+.+++++..+..|...|.+++|+| ++++|++|+.|+.
T Consensus       267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~  338 (368)
T 3mmy_A          267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW  338 (368)
T ss_dssp             --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred             -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence                   00001556789999999999999998 89999999999999999999999999999999 8999999999886


Q ss_pred             EEEEEc
Q 001258          884 IQIYNV  889 (1113)
Q Consensus       884 v~iwd~  889 (1113)
                      .+.|++
T Consensus       339 ~~~~~~  344 (368)
T 3mmy_A          339 SKGHEF  344 (368)
T ss_dssp             TTCGGG
T ss_pred             cccccc
Confidence            555544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=5.9e-30  Score=286.67  Aligned_cols=245  Identities=9%  Similarity=0.011  Sum_probs=202.9

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC-e
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L  434 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~  434 (1113)
                      .|.+.|++++|+|+|++ |++|+.||.|+|||+.+++....                ...+.+|...|.+++|+|+++ +
T Consensus         9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence            49999999999999995 89999999999999988762110                002457899999999999999 9


Q ss_pred             EEEEeCCCeEEEEEc-cCCceeeeeeeeec--ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC---------Ccee
Q 001258          435 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ  502 (1113)
Q Consensus       435 las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~---------~~~~  502 (1113)
                      |++|+.||.|++||+ .+++..    .+.+  |...|.+++|+| +.  ++++++.|+.|++||+.+         ++++
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSFQ----ALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSEE----ECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEcCCCeEEEEEeccCCceE----eccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            999999999999999 887642    5778  999999999999 77  799999999999999998         7777


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-CCCe--eeeeCCCCceEEEEEccCCCeEEeccccCceeE
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  579 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  579 (1113)
                      ..+. |...|.+++|++  +  .+++++.|+.|++||+++ ....  .....+...+.+++                   
T Consensus       145 ~~~~-~~~~v~~~~~~~--~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~-------------------  200 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTNS--S--RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA-------------------  200 (342)
T ss_dssp             SSSS-SCCCEEEEEECS--S--EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE-------------------
T ss_pred             eEEe-eCCceEEEEecC--C--cEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE-------------------
Confidence            7777 899999999864  3  299999999999999987 4432  22233344444444                   


Q ss_pred             EEecC-CCCEEEEEecCCcEEEEECCCC------ceEEEEccCCC-------CCCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          580 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       580 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                        |+| +++++++++.||.|++|+++..      +....+..+..       ...|.+++|+|++++|++++.||.|++|
T Consensus       201 --~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          201 --LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             --ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             --ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence              555 5557999999999999999887      77777776632       3379999999999999999999999999


Q ss_pred             EcCCC
Q 001258          646 ATSDG  650 (1113)
Q Consensus       646 d~~~~  650 (1113)
                      |+.++
T Consensus       279 d~~~~  283 (342)
T 1yfq_A          279 NLQTR  283 (342)
T ss_dssp             ETTTT
T ss_pred             cCccH
Confidence            99877

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.5e-29  Score=293.27  Aligned_cols=233  Identities=20%  Similarity=0.337  Sum_probs=204.6

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      +|...|+|++|  +|++ +++|+.||.|++||+.+++.+.                   .+.+|.+.|.+++|  ++++|
T Consensus       131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI  186 (435)
T ss_dssp             SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence            47788999888  7884 9999999999999999988765                   47789999999999  89999


Q ss_pred             EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee---eEeeccCcCE
Q 001258          436 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV  512 (1113)
Q Consensus       436 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~---~~~~~h~~~v  512 (1113)
                      ++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  ++++|+.|++|++||+.++..+   ..+.+|...|
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            999999999999999998765   6889999999999974  4  6999999999999999988766   6778999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .+++|    ++.++++|+.||.|++||+++......+..+...+.++.+.                       ++++++|
T Consensus       260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g  312 (435)
T 1p22_A          260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG  312 (435)
T ss_dssp             EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred             EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence            99997    34699999999999999999988888888777777777663                       2369999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.||.|++||+.+++.+..+..|  ...|.+++|  ++.+|++|+.||.|++||+.++
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGH--EELVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCC--SSCEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             eCCCeEEEEECCCCCEEEEEeCC--cCcEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999999998866  447889988  7899999999999999998655

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.5e-29  Score=293.11  Aligned_cols=194  Identities=15%  Similarity=0.295  Sum_probs=166.9

Q ss_pred             cCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001258          417 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  496 (1113)
Q Consensus       417 ~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~  496 (1113)
                      .+|...|.+++|  ++++|++|+.||.|++||+.+++.+.   .+.+|.+.|.+++|  +++  ++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            457778999887  89999999999999999999988665   68899999999999  667  7999999999999999


Q ss_pred             CCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe---eeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          497 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       497 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      .+++++..+.+|...|.+++|+  +  .++++|+.||.|++||+.+....   ..+..+...|.++++            
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~--~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~------------  264 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN--N--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF------------  264 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC--T--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE------------
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc--C--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe------------
Confidence            9999999999999999999975  2  48999999999999999886654   344555555655555            


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                 +++++++++.||.|++||+.+++.+..+..+  ...|.+++|  +++++++|+.||.|++||+.++
T Consensus       265 -----------~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~  326 (435)
T 1p22_A          265 -----------DDKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQY--RDRLVVSGSSDNTIRLWDIECG  326 (435)
T ss_dssp             -----------ETTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEE--ETTEEEEEETTSCEEEEETTTC
T ss_pred             -----------CCCEEEEEeCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC
Confidence                       3347999999999999999999999998866  446888888  5789999999999999998776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.7e-30  Score=289.46  Aligned_cols=255  Identities=16%  Similarity=0.206  Sum_probs=208.9

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCC--cceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  431 (1113)
                      -+|.+.|++++|+|+|++ |++|+.||.|+|||+..  ++.+.                   .+.+|.+.|++++|+|+ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~   67 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK   67 (379)
T ss_dssp             EECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCGG
T ss_pred             cCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCCC
Confidence            359999999999999995 99999999999999984  33332                   47789999999999987 


Q ss_pred             -CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEee
Q 001258          432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE  506 (1113)
Q Consensus       432 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~  506 (1113)
                       +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ....+.
T Consensus        68 ~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~  144 (379)
T 3jrp_A           68 FGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID  144 (379)
T ss_dssp             GCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEE
T ss_pred             CCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEec
Confidence             999999999999999999998622 33367789999999999999  78  79999999999999999874  345677


Q ss_pred             ccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEec
Q 001258          507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      +|...|.+++|++..           ++.++++++.||.|++||+++....    ..+..|...|.+++|+|++.     
T Consensus       145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~-----  219 (379)
T 3jrp_A          145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----  219 (379)
T ss_dssp             CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred             CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC-----
Confidence            899999999998742           5689999999999999999876543    23445556666666666510     


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCc---eEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                                   .+.+|++++.||.|++||+.++.   ....+....+...|.+++|+|++++|++++.||.|++|++.
T Consensus       220 -------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          220 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             -------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             -------------CCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence                         03479999999999999998865   33333443455679999999999999999999999999987


Q ss_pred             CC
Q 001258          649 DG  650 (1113)
Q Consensus       649 ~~  650 (1113)
                      .+
T Consensus       287 ~~  288 (379)
T 3jrp_A          287 LE  288 (379)
T ss_dssp             ET
T ss_pred             CC
Confidence            65

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.8e-29  Score=285.98  Aligned_cols=256  Identities=17%  Similarity=0.203  Sum_probs=201.5

Q ss_pred             CcceeEecc-CCCCcEEEEEcCC---CCeEEEEEecCCcEEEEecCC-cceeEeeeeeeeccCCCCcccccccccCCCcc
Q 001258          348 PKTVTRTLN-QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVS  422 (1113)
Q Consensus       348 ~~~~~~~~~-h~~~V~~~~~spd---g~~ll~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  422 (1113)
                      +.+....+. |.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ ++.+..                  .+.+|.+.
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~   88 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGP   88 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSC
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCC
Confidence            344445554 9999999999999   47 599999999999999997 444322                  46789999


Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEE--cCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGA  500 (1113)
Q Consensus       423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~~~~~~~l~s~s~d~~i~iwd~~~~~  500 (1113)
                      |.+++|+|++++|++++.||.|++||+.+++.+.    +.+|...|.+++|  ++++.  +|++++.|+.|++||+++++
T Consensus        89 v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~  162 (368)
T 3mmy_A           89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSN  162 (368)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSS
T ss_pred             EEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCc
Confidence            9999999999999999999999999999987654    5679999999999  88888  79999999999999999999


Q ss_pred             eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCcee
Q 001258          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1113)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~  578 (1113)
                      ++..+..|. .+.++.+.  .  ..+++++.++.+++|+++.........  .....+..+.+.++...           
T Consensus       163 ~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  226 (368)
T 3mmy_A          163 PMMVLQLPE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------  226 (368)
T ss_dssp             CSEEEECSS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------
T ss_pred             EEEEEecCC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------
Confidence            999998765 56666543  3  378889999999999998754433221  11223333333332220           


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCC---ceEEEEccCCCC----------CCcCeEEECCCCCEEEEEECCCcEEEE
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKIL  645 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iw  645 (1113)
                            ....+++++.||.|++|++...   ..+..+..+...          ..|.+++|+|++++|++++.||.|++|
T Consensus       227 ------~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iw  300 (368)
T 3mmy_A          227 ------KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFW  300 (368)
T ss_dssp             ------CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             ------CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEE
Confidence                  0112899999999999999887   456666555321          158999999999999999999999999


Q ss_pred             EcCCC
Q 001258          646 ATSDG  650 (1113)
Q Consensus       646 d~~~~  650 (1113)
                      |+.++
T Consensus       301 d~~~~  305 (368)
T 3mmy_A          301 DKDAR  305 (368)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            99876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=4.8e-30  Score=294.21  Aligned_cols=253  Identities=15%  Similarity=0.232  Sum_probs=201.9

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV  437 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las  437 (1113)
                      .....++++|+...++++|+.||.|+||++.......               .....+.+|.+.|++++|+| ++++|++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            3456789999988767778999999999996543321               01124789999999999999 9999999


Q ss_pred             EeCCCeEEEEEccCCcee----eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe--eccCcC
Q 001258          438 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP  511 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~  511 (1113)
                      |+.||+|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|++|++||+.+++++..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987421    223368899999999999999843 7999999999999999999999999  889999


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-eCCCCc-eEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRW-CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      |.+++|++  ++.+|++++.||.|++||+++......+ ..+... +..+.|+|+                     +.++
T Consensus       179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l  235 (402)
T 2aq5_A          179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSE---------------------GKIL  235 (402)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECST---------------------TEEE
T ss_pred             eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCC---------------------CcEE
Confidence            99999876  5579999999999999999987666555 344332 455555554                     4467


Q ss_pred             EEE---ecCCcEEEEECCCCce-EEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEcCCCc
Q 001258          590 LAA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGI  651 (1113)
Q Consensus       590 ~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~  651 (1113)
                      ++|   +.|+.|++||+.+++. +..... .+...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus       236 ~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          236 TTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            888   6899999999988764 333322 233568999999999999754 479999999998773

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.1e-29  Score=282.95  Aligned_cols=260  Identities=10%  Similarity=0.130  Sum_probs=210.7

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC--C
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  431 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  431 (1113)
                      ..+|.+.|++++|+|+|++ |++|+.||.|+|||+.++......               ...+.+|...|.+++|+|  |
T Consensus         7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~d   70 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASPEY   70 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCGGG
T ss_pred             CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCCCC
Confidence            3469999999999999995 999999999999999876432110               114678999999999999  6


Q ss_pred             CCeEEEEeCCCeEEEEEccCCce------eeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      +++|++|+.||.|++||+.+++.      ......+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.+.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence            99999999999999999988632      1334468899999999999999  88  79999999999999999988765


Q ss_pred             Eee-------------ccCcCEEEEeeeec-CCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCe
Q 001258          504 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       504 ~~~-------------~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      .+.             +|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            543             68889999998875 1347999999999998888776554  3345566667777777776520


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCC-----------------------------------------
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----------------------------------------  606 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------------------------  606 (1113)
                                       .+++|++++.||.|++||+.++                                         
T Consensus       229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence                             0036999999999999999765                                         


Q ss_pred             -----ceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          607 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       607 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                           +.+..+..|  ...|.+++|+|++++|++++.||.|++|++.++
T Consensus       292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                 445555544  557999999999999999999999999999887

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=4.2e-29  Score=291.33  Aligned_cols=303  Identities=12%  Similarity=0.126  Sum_probs=223.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcc-ccccccCCCCCC----------
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPE----------  818 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~-~~~~~~~~~~~~----------  818 (1113)
                      +...|.+++|+|+|++|++++.||.|+||++..........             .+. .....+.+  |.          
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~--h~~~~~~~~~~~   91 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS-------------RGEYNVYSTFQS--HEPEFDYLKSLE   91 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC-------------CCCEEEEEEEEC--CCCEEEGGGTEE
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc-------------ccceeEeccccc--cccccccccccc
Confidence            67899999999999999999999999999987543210000             000 00111222  55          


Q ss_pred             --CCccEEEEecCC--CEEEEEe-CCeEEEEECCCCcee---------------------------------------ee
Q 001258          819 --EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKTM---------------------------------------AT  854 (1113)
Q Consensus       819 --~~v~~l~~s~~~--~~l~~~s-dg~i~vwd~~~~~~~---------------------------------------~~  854 (1113)
                        ..|.+++|+|++  .+|++++ |++|++||+.++...                                       +.
T Consensus        92 ~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (447)
T 3dw8_B           92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRI  171 (447)
T ss_dssp             ECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEE
T ss_pred             ccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEE
Confidence              889999999998  7888888 999999999764431                                       12


Q ss_pred             -ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeee-------eecccccCeEEEEEcCCC-CEEEEEeCCC
Q 001258          855 -FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS-------KLKGHSKRITGLAFSHAL-NVLVSSGADS  924 (1113)
Q Consensus       855 -~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~-------~l~~h~~~V~~l~~s~d~-~~L~s~s~D~  924 (1113)
                       ..+|...|.+++|+| ++++|++| .||.|++||+.+ ++.+.       .+.+|...|++++|+|++ ++|++++.|+
T Consensus       172 ~~~~h~~~v~~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg  249 (447)
T 3dw8_B          172 FANAHTYHINSISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG  249 (447)
T ss_dssp             ECSCCSSCCCEEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS
T ss_pred             eccCCCcceEEEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC
Confidence             367999999999999 89999998 799999999984 44444       367899999999999998 9999999999


Q ss_pred             cEEEEeCCCCccccccccccCCCCCCC---------CCCCceEEEccCCcEEEEEcCCeEEEEeCCc-cceeeccccCCC
Q 001258          925 QLCVWSSDGWEKQKNRFLQIPTGRTPT---------AQSDTRVQFHQDQIHFLVVHETQLAIFETTK-LECVKQWVPRES  994 (1113)
Q Consensus       925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~-~~~~~~~~~~~h  994 (1113)
                      +|++||+.+++.... ......++...         ...|.+++|+|+|++|+++.++.|++||+.+ ++.+..+.  +|
T Consensus       250 ~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~--~~  326 (447)
T 3dw8_B          250 TIRLCDMRASALCDR-HSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQ--VH  326 (447)
T ss_dssp             CEEEEETTTCSSSCT-TCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEE--SC
T ss_pred             eEEEEECcCCccccc-eeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceee--cc
Confidence            999999998654211 11222222210         0168999999999999997559999999997 77777766  44


Q ss_pred             CCC---------------eeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcc---------------------
Q 001258          995 SAP---------------ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY--------------------- 1038 (1113)
Q Consensus       995 ~~~---------------v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~--------------------- 1038 (1113)
                      ...               +..++|+|++++|++|+.||.|++||+.+++.+........                     
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            321               33499999999999999999999999999887632111000                     


Q ss_pred             ----cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258         1039 ----LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1039 ----~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
                          ....+...|.  .++|+| ++++||+++.++ +++|.-
T Consensus       407 ~~~~~~~~~~~~i~--~~~~~p-~~~~la~~~~~~-~~~~~~  444 (447)
T 3dw8_B          407 EISVDSLDFNKKIL--HTAWHP-KENIIAVATTNN-LYIFQD  444 (447)
T ss_dssp             CEEGGGCCTTSCCC--EEEECS-SSSEEEEECSSC-EEEEEC
T ss_pred             cccccccccCCcee--EEEECC-CCCEEEEEecce-eeeecc
Confidence                0001223344  599999 788999988776 777763

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=280.77  Aligned_cols=223  Identities=16%  Similarity=0.277  Sum_probs=180.9

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  492 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~  492 (1113)
                      ++.+|.+.|++++|+|++++||+|+.||.|+|||+..+.. .....+.+|...|++++|+++  +.  +|++++.|+.|+
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~   82 (379)
T 3jrp_A            6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   82 (379)
T ss_dssp             CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred             EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence            5789999999999999999999999999999999984332 233478899999999999987  77  899999999999


Q ss_pred             EEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258          493 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       493 iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      +||+.+++  .+..+.+|...|.+++|++..++.++++++.||.|++||+.....  ...+..+...|.+++|+|.....
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99999987  777888899999999998764367999999999999999988643  34556677778888887753210


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCce----EEEEccCCCCCCcCeEEECCC---CCEEEEEECCCc
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKD---GCLLAVSTNDNG  641 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~  641 (1113)
                      .        ......+++.++++++.|+.|++||+.++..    ...+..|  ...|.+++|+|+   +++|++++.||.
T Consensus       163 ~--------~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~  232 (379)
T 3jrp_A          163 D--------GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRT  232 (379)
T ss_dssp             ---------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSC
T ss_pred             c--------ccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCE
Confidence            0        0111234567899999999999999987653    3444444  557999999999   899999999999


Q ss_pred             EEEEEcCCC
Q 001258          642 IKILATSDG  650 (1113)
Q Consensus       642 i~iwd~~~~  650 (1113)
                      |++||+.++
T Consensus       233 i~iwd~~~~  241 (379)
T 3jrp_A          233 CIIWTQDNE  241 (379)
T ss_dssp             EEEEEESST
T ss_pred             EEEEeCCCC
Confidence            999998776

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=6.3e-29  Score=284.87  Aligned_cols=288  Identities=15%  Similarity=0.127  Sum_probs=227.4

Q ss_pred             EEEEEeCCCceEEE-eecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec-CCCE
Q 001258          755 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY  832 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~-~~~~  832 (1113)
                      ..++++|+...+++ ++.+|.|+||++.......                  . ....+.  +|...|.+++|+| ++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~------------------~-~~~~~~--~h~~~V~~~~~~p~~~~~   96 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD------------------K-NVPLVC--GHTAPVLDIAWCPHNDNV   96 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC------------------T-TCCCBC--CCSSCEEEEEECTTCTTE
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC------------------C-CCceEe--cCCCCEEEEEeCCCCCCE
Confidence            35778888766554 6778999999985321100                  0 000122  3899999999999 9999


Q ss_pred             EEEEe-CCeEEEEECCCC-------ceeeeecCCCCCeeEEEEecCCC-cEEEEEecCCcEEEEEcccceeeeee--ccc
Q 001258          833 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH  901 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~-------~~~~~~~~~~~~i~~l~~s~~d~-~~la~g~~dg~v~iwd~~~~~~~~~l--~~h  901 (1113)
                      |++++ ||+|++||+.++       +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+  .+|
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            99999 899999999987       56788899999999999999 55 79999999999999999999999999  899


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE----cCCeEEE
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI  977 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v  977 (1113)
                      .+.|++++|+|++++|++++.|+.|++||+.+++....    ...++..  ..+..++|+|++.+++++    .|+.|++
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE----KDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL  249 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE----EECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeee----eccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence            99999999999999999999999999999998654221    1123322  247899999999999997    6899999


Q ss_pred             EeCCccceeeccccCCCCCCeeEEEECCCCCEEEE-EeCCCcEEEEecCCCce-eeecCCCcccCCCcccCccceEEEEe
Q 001258          978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSNVHPLVIAAH 1055 (1113)
Q Consensus       978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~Dg~v~vwd~~~~~~-~~~~~~~~~~~~gh~~~v~~i~~~~~ 1055 (1113)
                      ||+.+++.........|...+.+++|+|++++|++ |+.||.|++||+.+++. +..+.  .+   .|...|.  .++|+
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~--~~---~~~~~v~--~~~~s  322 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS--MF---SSKESQR--GMGYM  322 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEE--EE---CCSSCCS--EEEEC
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeec--cc---ccCCccc--ceEEe
Confidence            99998775322222356788999999999999875 55799999999999874 43333  00   2345666  48899


Q ss_pred             CCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1056 PQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1056 p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      | ++.++++  .|+.+++|++.+++
T Consensus       323 p-~~~~~~s--~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          323 P-KRGLEVN--KCEIARFYKLHERK  344 (402)
T ss_dssp             C-GGGSCGG--GTEEEEEEEEETTE
T ss_pred             c-cccccee--cceeEEEEEcCCCc
Confidence            9 6677664  57899999999876

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=2.4e-28  Score=282.16  Aligned_cols=267  Identities=13%  Similarity=0.227  Sum_probs=212.7

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ....+.|.+.|++++|+|++..+|++|+.+|.|+|||+.+......         ..........+.+|...|.+++|+|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence            3566779999999999998555799999999999999976211000         0000001114678999999999999


Q ss_pred             CCC-eEEEEeCCCeEEEEEccCCce----eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---cee
Q 001258          431 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ  502 (1113)
Q Consensus       431 dg~-~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~---~~~  502 (1113)
                      ++. +|++|+.||.|++||+.++..    +.....+.+|...|.+++|+|++.. +|++++.|+.|++||++++   +.+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence            998 999999999999999987432    2223467789999999999995444 7999999999999999987   577


Q ss_pred             eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      ..+..|...|++++|++... .++++|+.||.|++||+++. .....+..|...|.+++|+|++.               
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~---------------  334 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE---------------  334 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred             eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence            88889999999999887542 47999999999999999984 45566777777788777777764               


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCC--------------CceEEEEccCCCCCCcCeEEECCCCC-EEEEEECCCcEEEEE
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA  646 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd  646 (1113)
                           ..+++++.|+.|++||+..              .+.+..+..|  ...|.+++|+|++. ++++++.||.|++|+
T Consensus       335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                 2588999999999999976              2445555444  45799999999999 999999999999999


Q ss_pred             cCCC
Q 001258          647 TSDG  650 (1113)
Q Consensus       647 ~~~~  650 (1113)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.8e-27  Score=272.53  Aligned_cols=320  Identities=15%  Similarity=0.186  Sum_probs=239.3

Q ss_pred             ceEEEE---EcCCCCeEEEE--------------eCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCCCCeeEE
Q 001258          422 SVNRVI---WSPDGSLFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV  482 (1113)
Q Consensus       422 ~V~~l~---~spdg~~las~--------------~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l  482 (1113)
                      .+..++   |+|+++.++..              +.++.+.||.+.  ++. ......+..+ ..+.+++|+|++.  ++
T Consensus        62 g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~  137 (433)
T 3bws_A           62 ALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LA  137 (433)
T ss_dssp             EEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EE
T ss_pred             ccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EE
Confidence            455666   66666655543              233433555543  342 2223344444 4567999999655  78


Q ss_pred             EEecCCCcEEEEeCCCCceee-----EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceE
Q 001258          483 ITCGDDKTIKVWDATNGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCT  557 (1113)
Q Consensus       483 ~s~s~d~~i~iwd~~~~~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~  557 (1113)
                      ++++.|+.|++||+.+++.+.     .+.+|...|.+++|+  +++.++++++.|+.|++||+++.+....+..+...+.
T Consensus       138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~  215 (433)
T 3bws_A          138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP--EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK  215 (433)
T ss_dssp             EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG--GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred             EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEc--CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence            888899999999999998887     345788999999985  4558999999999999999998777777776777777


Q ss_pred             EEEEccCCCeEEeccccCceeEEEecCCCCEE-EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258          558 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       558 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                      +++|+|+++                     .+ ++++.++.|++||+.+++.+..+..+.   .+.+++|+|++++++++
T Consensus       216 ~~~~~~~~~---------------------~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          216 ILLYDPIRD---------------------LVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEEETTTT---------------------EEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEE
T ss_pred             EEEEcCCCC---------------------EEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEE
Confidence            777777665                     45 445589999999999998888776543   48899999999999988


Q ss_pred             E--------CCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCc
Q 001258          637 T--------NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  708 (1113)
Q Consensus       637 ~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (1113)
                      +        .|+.|++||+.++ +....+                                                   
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~-~~~~~~---------------------------------------------------  299 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKE-KLIDTI---------------------------------------------------  299 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTT-EEEEEE---------------------------------------------------
T ss_pred             ECCCCccccCCCeEEEEECCCC-cEEeec---------------------------------------------------
Confidence            7        3566667766544 110000                                                   


Q ss_pred             cccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCC
Q 001258          709 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  788 (1113)
Q Consensus       709 ~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~  788 (1113)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE-e-CCeEEEEECCCCceeeeecCCCCCeeEEE
Q 001258          789 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLA  866 (1113)
Q Consensus       789 ~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~-s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~  866 (1113)
                                                 .+...+.+++|+|+++.++++ + ++.|++||+.+++....+. +...+.+++
T Consensus       300 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~  351 (433)
T 3bws_A          300 ---------------------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIA  351 (433)
T ss_dssp             ---------------------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEE
T ss_pred             ---------------------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEE
Confidence                                       012235567788888765444 4 7899999999888877776 667799999


Q ss_pred             EecCCCcEEEEEec---------------CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 001258          867 FHPQDNNIIAIGMD---------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWS  930 (1113)
Q Consensus       867 ~s~~d~~~la~g~~---------------dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd  930 (1113)
                      |+| ++++|++++.               ||.|++||+.+++.+..+..+ ..+.+++|+|||++|++++. |++|++|+
T Consensus       352 ~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~  429 (433)
T 3bws_A          352 LSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYR  429 (433)
T ss_dssp             ECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             EcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence            999 8888888876               579999999999988888764 57999999999999998875 99999999


Q ss_pred             CCC
Q 001258          931 SDG  933 (1113)
Q Consensus       931 ~~~  933 (1113)
                      ++.
T Consensus       430 ~~~  432 (433)
T 3bws_A          430 RDG  432 (433)
T ss_dssp             ETT
T ss_pred             ecC
Confidence            864

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.6e-27  Score=277.32  Aligned_cols=262  Identities=15%  Similarity=0.060  Sum_probs=202.3

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcc---eeEeeeeeee---ccCC------------C-------------
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA------------C-------------  407 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~---~~~~~~~~~~---~~~~------------~-------------  407 (1113)
                      .++.+++|+|||+ +|+++ .++.|.+||+.+|+   .+.......-   ....            .             
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            5789999999999 46655 57899999999998   4432111000   0000            0             


Q ss_pred             -------CcccccccccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEcc--CCceeeeeeeeecccCCeeEEEEcCCC
Q 001258          408 -------SMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPN  477 (1113)
Q Consensus       408 -------~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~~~  477 (1113)
                             ..........+|.+.|++++|+|+|++| ++|+.||.|+|||+.  +++.+..+ ....|...|.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLR-KRFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEE-EEEECSSCEEEEEECTTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeee-ecccCCCCceEEEEcCCC
Confidence                   0000111234677789999999999996 889999999999999  77766532 113677899999999999


Q ss_pred             CeeEEEEecCCCcEEEEeCCCCceee----EeeccCcCEEEEeeeec-CCceEEEEEecCCcEEEEEcCCCCCeee-eeC
Q 001258          478 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA  551 (1113)
Q Consensus       478 ~~~~l~s~s~d~~i~iwd~~~~~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~  551 (1113)
                      +  +|++++.|+.|++|++.++....    .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...... +..
T Consensus       162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            9  79999999999999999887554    78899999999999876 2257999999999999999998776665 446


Q ss_pred             CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC----------------
Q 001258          552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------  615 (1113)
Q Consensus       552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------  615 (1113)
                      |...|.+++|+ ++.                     +|++++.|+.|++||+.+++++..+..+                
T Consensus       240 h~~~v~~~~~s-d~~---------------------~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (450)
T 2vdu_B          240 HKHFVSSICCG-KDY---------------------LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR  297 (450)
T ss_dssp             CSSCEEEEEEC-STT---------------------EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred             CCCceEEEEEC-CCC---------------------EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence            66667777766 555                     7999999999999999999988887532                


Q ss_pred             -------CCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEc
Q 001258          616 -------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT  647 (1113)
Q Consensus       616 -------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~  647 (1113)
                             .....|.+++|+|++++|++++ .++.|++|++
T Consensus       298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                   1123578999999999999999 8999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.5e-26  Score=264.31  Aligned_cols=227  Identities=16%  Similarity=0.146  Sum_probs=180.3

Q ss_pred             CeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE-EEEeCCCeEEEEEc
Q 001258          371 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY  449 (1113)
Q Consensus       371 ~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~i~iwd~  449 (1113)
                      ++++++++.|+.|++||+.+++.+..                   +.+|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            35799999999999999999887653                   44454 58999999999987 56678999999999


Q ss_pred             cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEE-EE
Q 001258          450 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS  528 (1113)
Q Consensus       450 ~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s  528 (1113)
                      .+++.+.   .+..|. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..| ..+.+++|+++  ++.+ ++
T Consensus        62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~d--g~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVT  133 (391)
T ss_dssp             TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEE
T ss_pred             CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCC--CCEEEEE
Confidence            9988765   444444 8999999999995 4466778899999999999998888754 56888887654  4555 78


Q ss_pred             EecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE-EEEecCCcEEEEECCCCc
Q 001258          529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ  607 (1113)
Q Consensus       529 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  607 (1113)
                      ++.|+.|++||+.+.+....+..+ ..+..++|+|+++                     ++ ++++.++.|++||+.+++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~---------------------~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGT---------------------KVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSS---------------------EEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCC---------------------EEEEEeCCCCEEEEEECCCCe
Confidence            888999999999886655555433 2345555555554                     55 567789999999999998


Q ss_pred             eEEEEccCCCCCCcCeEEECCCCCEEEEEE---CCCcEEEEEcCCC
Q 001258          608 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG  650 (1113)
Q Consensus       608 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~  650 (1113)
                      .+..+..+   ..+.+++|+|+++++++++   .++.|++||+.++
T Consensus       192 ~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          192 VIDTVKVE---AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEECS---SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EEEEEecC---CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            88877643   3578999999999999888   6899999998766

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=4.4e-27  Score=248.11  Aligned_cols=293  Identities=15%  Similarity=0.146  Sum_probs=209.4

Q ss_pred             eeEEEEc-CCCCeeEEEEecCCCcEEEEeCCCC---ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC
Q 001258          468 VNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  543 (1113)
Q Consensus       468 V~~v~~s-~~~~~~~l~s~s~d~~i~iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  543 (1113)
                      +.++-|- +..+...+++++ ..+|++|+..++   ++++++.+|..+|..+.+.++..+-+.++-+             
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-------------  107 (356)
T 2w18_A           42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG-------------  107 (356)
T ss_dssp             EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC-------------
T ss_pred             EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec-------------
Confidence            5556663 344555677777 469999999999   8999999999999999987755432222221             


Q ss_pred             CCeeeeeCCCCceEEEEEccC----CCeEEeccccCceeEEEecCCCCEEEEEe--cCCcEEEEEC-CCCceEEEEccCC
Q 001258          544 GSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDADG  616 (1113)
Q Consensus       544 ~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~  616 (1113)
                            ..+...|.+++++|+    ++.+..+.+...  +..+ ++++.+.+++  .|+.|++|++ .+++.+..+..+.
T Consensus       108 ------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~--v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~  178 (356)
T 2w18_A          108 ------NLEIREIRALFCSSDDESEKQVLLKSGNIKA--VLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP  178 (356)
T ss_dssp             ------SSSEEEEEEECC------CCEEEEEEEEEEE--EEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred             ------cccccceEEEEECCCccccccEEEeCCCeEE--EEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence                  123446889999999    777777665433  3444 5555555533  5999999999 5588888877774


Q ss_pred             CCCCcCeEEECC---CCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258          617 GLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  693 (1113)
Q Consensus       617 ~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1113)
                        ..+..++|++   ++.+|++++.|++|+|||+.++ +.++.+.+|..                               
T Consensus       179 --~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~-------------------------------  224 (356)
T 2w18_A          179 --PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS-------------------------------  224 (356)
T ss_dssp             --CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC--------------------------------
T ss_pred             --CceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc-------------------------------
Confidence              4688899999   7899999999999999999998 56665543211                               


Q ss_pred             ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258          694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  773 (1113)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  773 (1113)
                                                                              +...+.+++|+|+|..+++++.+.
T Consensus       225 --------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~~  248 (356)
T 2w18_A          225 --------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHPC  248 (356)
T ss_dssp             ----------------------------------------------------------CCCEEEEEEETTEEEEEEC---
T ss_pred             --------------------------------------------------------ceeeeEEEEECCCCCEEEEeccCC
Confidence                                                                    223567889999998777665431


Q ss_pred             eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee
Q 001258          774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  852 (1113)
Q Consensus       774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~  852 (1113)
                      .  +                                                     ..+++|+ |++|++||..+++.+
T Consensus       249 ~--~-----------------------------------------------------w~laSGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          249 A--K-----------------------------------------------------ESESLRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             ----------------------------------------------------------------CCEEEEEEETTTTEEE
T ss_pred             C--c-----------------------------------------------------ceeeccCCCcEEEEEECCCCEEE
Confidence            1  1                                                     1356677 899999999999887


Q ss_pred             eee-----cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-EEEEcCCCCEEEEEeCCCcE
Q 001258          853 ATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQL  926 (1113)
Q Consensus       853 ~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v  926 (1113)
                      ..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|.+.+. .++|+|||++|++|+.|++|
T Consensus       274 ~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TI  350 (356)
T 2w18_A          274 GVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNI  350 (356)
T ss_dssp             EEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCE
T ss_pred             EEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcE
Confidence            665     356555443333   367999999999999999999999999999988766 58999999999999999999


Q ss_pred             EEEeC
Q 001258          927 CVWSS  931 (1113)
Q Consensus       927 ~iwd~  931 (1113)
                      +|||+
T Consensus       351 klWd~  355 (356)
T 2w18_A          351 FVYHY  355 (356)
T ss_dssp             EEEEE
T ss_pred             EEecC
Confidence            99996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-28  Score=301.14  Aligned_cols=255  Identities=16%  Similarity=0.204  Sum_probs=207.1

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCc--ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC-
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-  431 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-  431 (1113)
                      -+|.+.|++++|+|+|++ |++|+.||.|+|||+.++  +.+.                   .+.+|.+.|++++|+|+ 
T Consensus         6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~~   65 (753)
T 3jro_A            6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHPK   65 (753)
T ss_dssp             --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCTT
T ss_pred             ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCCC
Confidence            359999999999999995 999999999999999843  3322                   47899999999999998 


Q ss_pred             -CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCc--eeeEee
Q 001258          432 -GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIFE  506 (1113)
Q Consensus       432 -g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~--~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~  506 (1113)
                       +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+  +.  ++++|+.||+|++||+.++.  ....+.
T Consensus        66 ~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~  142 (753)
T 3jro_A           66 FGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIID  142 (753)
T ss_dssp             SCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEee
Confidence             99999999999999999999862 233367889999999999999  88  79999999999999998873  445678


Q ss_pred             ccCcCEEEEeeeecC-----------CceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEec
Q 001258          507 GHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      +|...|.+++|++..           ++.++++|+.||.|++||+++....    ..+..|...|.+++|+|++.     
T Consensus       143 ~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-----  217 (753)
T 3jro_A          143 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL-----  217 (753)
T ss_dssp             CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS-----
T ss_pred             cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCC-----
Confidence            899999999998741           4679999999999999999876432    24455556666666665510     


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceE---EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                                   .++++++++.||.|++||+.++...   .......+...|.+++|+|+++++++++.||.|++|++.
T Consensus       218 -------------~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          218 -------------LRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             -------------SSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             -------------CCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence                         0347999999999999999886421   112223345679999999999999999999999999998


Q ss_pred             CC
Q 001258          649 DG  650 (1113)
Q Consensus       649 ~~  650 (1113)
                      ++
T Consensus       285 ~~  286 (753)
T 3jro_A          285 LE  286 (753)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.5e-26  Score=264.41  Aligned_cols=329  Identities=9%  Similarity=0.097  Sum_probs=242.0

Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      .++++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.|++|++||+.+++.+..+..+. .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~~-~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---TIPVGS-NPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---EeecCC-CcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence            467888999999999999988665   555554 5899999999994 45788899999999999999998888655 89


Q ss_pred             EEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE-E
Q 001258          513 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L  590 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~  590 (1113)
                      .+++|+++  +.+| ++++.++.|++||+.+++....+..+ ..+.+++|+|+++                     ++ +
T Consensus        77 ~~~~~spd--g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~---------------------~l~~  132 (391)
T 1l0q_A           77 QGVAVSPD--GKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK---------------------KLYV  132 (391)
T ss_dssp             EEEEECTT--SSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS---------------------EEEE
T ss_pred             cceEECCC--CCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCC---------------------EEEE
Confidence            99998754  4555 55667899999999986655544432 2345555555554                     55 6


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1113)
                      +++.++.|++||+.+++.+..+..+.   .+.+++|+|+++++ ++++.++.|++||+.++ +....+.           
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-----------  197 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-----------  197 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence            77889999999999999888887543   46899999999887 56677899999998665 1111000           


Q ss_pred             CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258          670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  749 (1113)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  749 (1113)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                                                                                         +...+.+++|+|+
T Consensus       198 -------------------------------------------------------------------~~~~~~~~~~~~~  210 (391)
T 1l0q_A          198 -------------------------------------------------------------------VEAAPSGIAVNPE  210 (391)
T ss_dssp             -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred             -------------------------------------------------------------------cCCCccceEECCC
Confidence                                                                               1223455667777


Q ss_pred             CCEEEEEe----CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEecCCcEEEEEcccceeeeeecccccC
Q 001258          830 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       830 ~~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                      ++++++++    ++.|++||+.+++.+..+..+. .+.+++|+| ++++| ++++.|+.|++||+.+++.+..+..|..+
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            77666654    5789999998888888877654 578999999 77666 67788999999999999998888776554


Q ss_pred             eE---EEEEcC------------CC----------CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258          905 IT---GLAFSH------------AL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  959 (1113)
Q Consensus       905 V~---~l~~s~------------d~----------~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  959 (1113)
                      ..   .+.+.|            +.          ..+...+.|.++++|++..+....      .        ......
T Consensus       289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~------~--------~~~~~~  354 (391)
T 1l0q_A          289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK------K--------QNPTHT  354 (391)
T ss_dssp             ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC------S--------SSCEEC
T ss_pred             CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC------c--------CCCeEE
Confidence            21   122222            11          345666778999999998754210      0        123467


Q ss_pred             EccCCcEEEE
Q 001258          960 FHQDQIHFLV  969 (1113)
Q Consensus       960 ~spdg~~l~~  969 (1113)
                      |+++|.|.+.
T Consensus       355 ~~~~g~y~~~  364 (391)
T 1l0q_A          355 YSETGIYTVR  364 (391)
T ss_dssp             CSSCEEEEEE
T ss_pred             eCCCceEEEE
Confidence            8999998875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.8e-28  Score=274.35  Aligned_cols=251  Identities=13%  Similarity=0.090  Sum_probs=156.6

Q ss_pred             cCCCCcEEEEE---cCCCCeEEEEEecCCcEEEEecCCccee-----EeeeeeeeccCCCCc-----ccccccccCCCcc
Q 001258          356 NQGSSPMSMDF---HPVQQTLLLVGTNVGDIGLWEVGSRERL-----VLRNFKVWDLGACSM-----PLQAALVKDPGVS  422 (1113)
Q Consensus       356 ~h~~~V~~~~~---spdg~~ll~~gs~dg~i~iwd~~~~~~~-----~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~  422 (1113)
                      .-.....++.|   +|++..++++| .++.|.+|+.......     .......++......     +........|...
T Consensus        13 pl~~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (393)
T 4gq1_A           13 PLNVRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGD   91 (393)
T ss_dssp             CTTCCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC-----
T ss_pred             cCCCCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCC
Confidence            33455677777   45566556665 5888999986432111     111111121111000     0111123455666


Q ss_pred             eEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee--eeeeeecccCCeeEEEEcC--------CCCeeEEEEecCCCcEE
Q 001258          423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITCGDDKTIK  492 (1113)
Q Consensus       423 V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------~~~~~~l~s~s~d~~i~  492 (1113)
                      +....+++++.+||+++.|++|+|||+.+++...  ....+.+|.+.|++|+|+|        |++  +|+|||.|++|+
T Consensus        92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~  169 (393)
T 4gq1_A           92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLI  169 (393)
T ss_dssp             -----CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEE
T ss_pred             cceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEE
Confidence            6667777788999999999999999999887543  2345789999999999998        777  899999999999


Q ss_pred             EEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc
Q 001258          493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  572 (1113)
Q Consensus       493 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  572 (1113)
                      |||+.++.++..+.+|...|.+++|+|.. ..+|++++.||+|++||+.+.........+.......             
T Consensus       170 ~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~-------------  235 (393)
T 4gq1_A          170 IWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW-------------  235 (393)
T ss_dssp             EEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC-------------
T ss_pred             EEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce-------------
Confidence            99999999988888999999999998643 2589999999999999998866544332221111000             


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECCCcEEEEEcCCC
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                      .++......           .......++...+.++.|+ ++++.+++++.|+++++||+..+
T Consensus       236 ----------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~  287 (393)
T 4gq1_A          236 ----------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN  287 (393)
T ss_dssp             ----------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred             ----------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence                            011110000           0011111334568899987 79999999999999999998776

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=6.1e-27  Score=262.42  Aligned_cols=298  Identities=14%  Similarity=0.201  Sum_probs=209.0

Q ss_pred             ccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          416 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       416 ~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      ..+|.+.|++++|||||++||+|+.++ ++|||+.+++...   .  .+...+..+++.+++.. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            578999999999999999999998776 7899998765443   2  22335888999998884 446788899999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      +.+++++..+. |...|.++++++  +  .++.+ .|+.|++||+.+. +....+..   ....                
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~----------------  142 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGV----------------  142 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEE----------------
T ss_pred             CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCce----------------
Confidence            99999999887 677999999754  2  34433 4889999999886 44433322   1222                


Q ss_pred             CceeEEEecCCCCEEEE--EecCCcEEEEECCCCc----------------eEEEEccCCCCCCcCeEEECCCCCEEEEE
Q 001258          575 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                           +++++  .++++  |+.+|.|++||+.++.                .+..+..|  ...|.+++|+|+|++|+++
T Consensus       143 -----~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          143 -----CEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             -----EEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred             -----EEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence                 22333  34555  5789999999998865                25666655  5589999999999999999


Q ss_pred             ECCCc-EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCc
Q 001258          637 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  715 (1113)
Q Consensus       637 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (1113)
                      +.|++ |++||+.++ +.+..+..                                                        
T Consensus       214 s~d~~~v~iwd~~~~-~~~~~~~~--------------------------------------------------------  236 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDG-VLVREFRR--------------------------------------------------------  236 (355)
T ss_dssp             ETTCSEEEEEETTTC-CEEEEEEC--------------------------------------------------------
T ss_pred             eCCCCEEEEEECCCC-cEEEEEEc--------------------------------------------------------
Confidence            99998 999999877 33332210                                                        


Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCce----
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA----  791 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----  791 (1113)
                                                      ..|...|.+++|+|++++|++++.|+.+++|++...........    
T Consensus       237 --------------------------------g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~  284 (355)
T 3vu4_A          237 --------------------------------GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWI  284 (355)
T ss_dssp             --------------------------------TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTE
T ss_pred             --------------------------------CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCccccccccee
Confidence                                            01567899999999999999999999999999976432111100    


Q ss_pred             eeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCC
Q 001258          792 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  849 (1113)
Q Consensus       792 ~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~  849 (1113)
                      .....-..|....     ..+. .........++|++++++|++++ ||.+++|++..+
T Consensus       285 ~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          285 NMKYFQSEWSLCN-----FKLS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             ECCCCCCSSCSEE-----EECC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eccccccccceeE-----EEec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence            0000000111100     0011 01233457799999999999998 999999998653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=3.5e-28  Score=276.73  Aligned_cols=266  Identities=10%  Similarity=-0.019  Sum_probs=186.4

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC------
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP------  430 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp------  430 (1113)
                      |...+....+++++. +|++|+.|++|+|||..+++......+              ..+.||.+.|++++|+|      
T Consensus        88 ~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~~  152 (393)
T 4gq1_A           88 HDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSADN  152 (393)
T ss_dssp             ---------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTTC
T ss_pred             cCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEcccccccc
Confidence            555555556666666 699999999999999998876543221              15789999999999998      


Q ss_pred             --CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe---
Q 001258          431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---  505 (1113)
Q Consensus       431 --dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~---  505 (1113)
                        ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++.....   
T Consensus       153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~  228 (393)
T 4gq1_A          153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT  228 (393)
T ss_dssp             SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred             CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence              89999999999999999999877554   56789999999999999865 7999999999999999887654322   


Q ss_pred             ----------------------eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEcc
Q 001258          506 ----------------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  563 (1113)
Q Consensus       506 ----------------------~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~  563 (1113)
                                            .+|...|.++.|. .+++..|++++.|+.+++||+........+..+...+..+.+.+
T Consensus       229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred             CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence                                  3577788888875 35678999999999999999998877777777777778888887


Q ss_pred             CCCeEEeccccCceeEEEecCCCC-EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcE
Q 001258          564 DGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI  642 (1113)
Q Consensus       564 ~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  642 (1113)
                      +++...  .....+..+.+.+.+. ++++|+.||.|++||+.+++....+..+.  ..|.+++|+|||++||+++.+| +
T Consensus       308 ~~~~~~--~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~--~~V~svafspdG~~LA~as~~G-v  382 (393)
T 4gq1_A          308 NVQGIS--LFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLG--MPIVDFCWHQDGSHLAIATEGS-V  382 (393)
T ss_dssp             SEEEEC--SSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECS--SCEEEEEECTTSSEEEEEESSE-E
T ss_pred             cccccc--ccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCC--CcEEEEEEcCCCCEEEEEeCCC-e
Confidence            764321  1122233333444444 55667889999999999998887776554  4799999999999999998765 5


Q ss_pred             EEEEc
Q 001258          643 KILAT  647 (1113)
Q Consensus       643 ~iwd~  647 (1113)
                      .+|.+
T Consensus       383 ~lvrL  387 (393)
T 4gq1_A          383 LLTRL  387 (393)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=5.9e-27  Score=247.16  Aligned_cols=231  Identities=13%  Similarity=0.123  Sum_probs=171.6

Q ss_pred             ccCceEEEEEeCC----CceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258          750 RATKISRLIFTNS----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  825 (1113)
Q Consensus       750 ~~~~i~~~~~s~~----~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~  825 (1113)
                      +...|.+++++|+    ++.++.++.+  +.+|++                                             
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------------------------------------  142 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------------------------------------  142 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence            3457889999999    8888887744  556642                                             


Q ss_pred             EecCCCEEEEEe---CCeEEEEEC-CCCceeeeecCCCCCeeEEEEec--CCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          826 LSKNDSYVMSAS---GGKISLFNM-MTFKTMATFMPPPPAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       826 ~s~~~~~l~~~s---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                        ++++.+.++.   |++|++|++ .+++.+..+.+|...++.++|++  .++.+||+|+.|++|+|||+.+++++.++.
T Consensus       143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence              3556666653   889999999 45888888888999898888887  357999999999999999999999999998


Q ss_pred             ccc---cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEE
Q 001258          900 GHS---KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA  976 (1113)
Q Consensus       900 ~h~---~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~  976 (1113)
                      +|.   ..+.+++|+|||.++++++.+..  +|++.++                                   +.|++++
T Consensus       221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~laSG-----------------------------------s~D~tIk  263 (356)
T 2w18_A          221 IDDSYQASVCHKAYSEMGLLFIVLSHPCA--KESESLR-----------------------------------SPVFQLI  263 (356)
T ss_dssp             CCC---CCCEEEEEEETTEEEEEEC-------------------------------------------------CCEEEE
T ss_pred             CCCcceeeeEEEEECCCCCEEEEeccCCC--cceeecc-----------------------------------CCCcEEE
Confidence            754   46778899999999987775443  3544331                                   2466777


Q ss_pred             EEeCCccceeeccc---cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEE
Q 001258          977 IFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA 1053 (1113)
Q Consensus       977 v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~ 1053 (1113)
                      +||..+++++..+.   +.+|...+.+..++  +.++++++.|++|+|||+.+++.+..+.       +|...+.. .++
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs-~va  333 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS-FVK  333 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC-EEE
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE-EEE
Confidence            88887777665442   34666555555544  8899999999999999999999999987       77766553 478


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1054 AHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1054 ~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      |+| ||++|++|+.|++|+|||+.
T Consensus       334 fSP-DG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          334 WSG-TDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             ECS-SSSEEEEECTTSCEEEEEEC
T ss_pred             ECC-CCCEEEEEECCCcEEEecCC
Confidence            999 78999999999999999963

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=1.1e-26  Score=260.20  Aligned_cols=236  Identities=13%  Similarity=0.116  Sum_probs=178.4

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      -.|.+.|++++|||||+ +|++|+.+| ++|||+.+++.....                     +...+..+++++++++
T Consensus        16 ~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ---CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEECTTSSE
T ss_pred             ccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEEcCCCCE
Confidence            34999999999999999 488888665 789999887665421                     1125888999999988


Q ss_pred             EE-EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ceeeEeeccCcCE
Q 001258          435 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  512 (1113)
Q Consensus       435 la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~h~~~v  512 (1113)
                      ++ +++.|++|+|||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..   +.
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~  140 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG  140 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred             EEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence            85 56778999999999998766   444 67799999999864    3333 3789999999998 77777765   33


Q ss_pred             EEEeeeecCCceEEEE--EecCCcEEEEEcCCCCC----------------eeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          513 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGS----------------RVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ..+++++    .+++.  |+.||.|++||+.+...                ...+..|...|.+++              
T Consensus       141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~--------------  202 (355)
T 3vu4_A          141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR--------------  202 (355)
T ss_dssp             EEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE--------------
T ss_pred             ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE--------------
Confidence            3344444    24554  68899999999987541                334444555555544              


Q ss_pred             CceeEEEecCCCCEEEEEecCCc-EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                             |+|++++|++++.|++ |++||+.+++++..+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus       203 -------~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          203 -------LNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             -------ECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             -------ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence                   5555558999999998 99999999999999873223458999999999999999999999999999765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.3e-26  Score=268.81  Aligned_cols=296  Identities=13%  Similarity=0.115  Sum_probs=227.0

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeee--eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      ..+.+++|+|++.++++++.|+.|++||+.+++......  .+.+|.+.|.+++|++++.  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            356699999988888888889999999999988664221  3458999999999999998  899999999999999999


Q ss_pred             CceeeEeeccCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          499 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      ++.+..+..|...+.+++|+++.  ..+ ++++.|+.|++||+++++....+.. ...+.+++++|++            
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g------------  265 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDPIR--DLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDG------------  265 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEETTT--TEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTS------------
T ss_pred             ceEEEEEcCCCCCeeEEEEcCCC--CEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCC------------
Confidence            99999999999999999987644  455 5666899999999987655444433 2335555555555            


Q ss_pred             eEEEecCCCCEEEEEe--------cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcC
Q 001258          578 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS  648 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~  648 (1113)
                               +++++++        .|+.|++||+.+++.+..+...   ..+.+++|+|+++.+ ++++.++.|++||+.
T Consensus       266 ---------~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          266 ---------KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             ---------SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE---ECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             ---------CEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC---CCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence                     4677766        4889999999999887776433   247889999999755 666889999999987


Q ss_pred             CCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceee
Q 001258          649 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  728 (1113)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i  728 (1113)
                      ++ +....+.                                                                      
T Consensus       334 ~~-~~~~~~~----------------------------------------------------------------------  342 (433)
T 3bws_A          334 EK-KVQKSIP----------------------------------------------------------------------  342 (433)
T ss_dssp             TT-EEEEEEE----------------------------------------------------------------------
T ss_pred             CC-cEEEEec----------------------------------------------------------------------
Confidence            66 2221110                                                                      


Q ss_pred             EeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccc
Q 001258          729 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  808 (1113)
Q Consensus       729 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~  808 (1113)
                                           +...+.+++|+|+++.+++++.+..                                  
T Consensus       343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~----------------------------------  367 (433)
T 3bws_A          343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN----------------------------------  367 (433)
T ss_dssp             ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred             ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence                                 2345778999999988877765410                                  


Q ss_pred             ccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CCcEEE
Q 001258          809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  886 (1113)
Q Consensus       809 ~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~v~i  886 (1113)
                                 .+       +..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus       368 -----------~~-------~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          368 -----------HP-------TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             -----------CT-------TTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred             -----------cc-------ccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence                       00       223445555 89999999999998888875 45789999999 8888887775 999999


Q ss_pred             EEccc
Q 001258          887 YNVRV  891 (1113)
Q Consensus       887 wd~~~  891 (1113)
                      |++..
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99863

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=6.8e-27  Score=272.06  Aligned_cols=246  Identities=9%  Similarity=0.042  Sum_probs=200.4

Q ss_pred             CCCCccEEEEecCCCEE-EEEe-CCeEEEEECC--CCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          817 PEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l-~~~s-dg~i~vwd~~--~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                      |...|.+++|+|++++| ++++ ||.|++||+.  +++.+..+.  .+...|.+++|+| ++++|++|+.||.|++|++.
T Consensus       101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~~  179 (450)
T 2vdu_B          101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDIN  179 (450)
T ss_dssp             CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEecC
Confidence            66689999999999996 7786 8999999999  888888876  5678899999999 89999999999999999998


Q ss_pred             cceeee----eecccccCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          891 VDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       891 ~~~~~~----~l~~h~~~V~~l~~s~d---~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      +++...    .+.+|...|++++|+|+   +++|++++.|++|++||+.+++...    ....+|.   ..|.+++|+ +
T Consensus       180 ~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~----~~~~~h~---~~v~~~~~s-d  251 (450)
T 2vdu_B          180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD----KWLFGHK---HFVSSICCG-K  251 (450)
T ss_dssp             SCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE----EECCCCS---SCEEEEEEC-S
T ss_pred             CcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee----eeecCCC---CceEEEEEC-C
Confidence            877554    78899999999999999   9999999999999999998865321    1233444   479999999 9


Q ss_pred             CcEEEE-EcCCeEEEEeCCccceeeccccC-----------------------CCCCCeeEEEECCCCCEEEEEe-CCCc
Q 001258          964 QIHFLV-VHETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDAT 1018 (1113)
Q Consensus       964 g~~l~~-~~d~~v~v~d~~~~~~~~~~~~~-----------------------~h~~~v~~l~~s~dg~~l~s~~-~Dg~ 1018 (1113)
                      +.+|++ +.|+.|++||+.+++++..+...                       .+...|.+++|+|++++|++++ .|+.
T Consensus       252 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~  331 (450)
T 2vdu_B          252 DYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC  331 (450)
T ss_dssp             TTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence            999999 58999999999999987776421                       2245799999999999999999 8999


Q ss_pred             EEEEec--CCC---ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC-------CCcEEEEeccCCCccc
Q 001258         1019 VCVFSA--ANL---KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKW 1083 (1113)
Q Consensus      1019 v~vwd~--~~~---~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~ 1083 (1113)
                      |+||++  .++   +.+..+.       +| +.|.  +++|+| ++ ++++.+.       +..|.+|.+....++|
T Consensus       332 i~iw~~~~~~~~~l~~~~~~~-------~~-~~v~--~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~  396 (450)
T 2vdu_B          332 IIILEMSEKQKGDLALKQIIT-------FP-YNVI--SLSAHN-DE-FQVTLDNKESSGVQKNFAKFIEYNLNENSF  396 (450)
T ss_dssp             EEEEEECSSSTTCEEEEEEEE-------CS-SCEE--EEEEET-TE-EEEEECCTTCCSSCCCSEEEEEEETTTTEE
T ss_pred             EEEEEeccCCCCceeeccEec-------cC-CceE--EEEecC-Cc-EEEEEecccCCCCCCcceEEEEEEcCCCeE
Confidence            999999  555   5555554       44 4455  588998 44 5555433       5568999887665445

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=4.4e-27  Score=262.83  Aligned_cols=280  Identities=8%  Similarity=0.057  Sum_probs=214.5

Q ss_pred             EEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC
Q 001258          472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  551 (1113)
Q Consensus       472 ~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  551 (1113)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+..          
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~----------  103 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG----------  103 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence            4445666  79999999999999999999988887  466777776653     9999999999999765          


Q ss_pred             CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC--C
Q 001258          552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D  629 (1113)
Q Consensus       552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~  629 (1113)
                                                                  +.+.+|+..+++.+..+... +...|.+++|+|  +
T Consensus       104 --------------------------------------------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~  138 (343)
T 3lrv_A          104 --------------------------------------------NQITILDSKTNKVLREIEVD-SANEIIYMYGHNEVN  138 (343)
T ss_dssp             --------------------------------------------TEEEEEETTTCCEEEEEECC-CSSCEEEEECCC---
T ss_pred             --------------------------------------------CceEEeecCCcceeEEeecC-CCCCEEEEEcCCCCC
Confidence                                                        24668888888877666532 234799999999  9


Q ss_pred             CCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCcc
Q 001258          630 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR  709 (1113)
Q Consensus       630 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  709 (1113)
                      ++++++++.||.|++||+.++. .......                                                  
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~--------------------------------------------------  167 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDS-QYIVHSA--------------------------------------------------  167 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSC-EEEEECC--------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCc-EEEEEec--------------------------------------------------
Confidence            9999999999999999998772 2221110                                                  


Q ss_pred             ccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCC
Q 001258          710 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  789 (1113)
Q Consensus       710 ~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~  789 (1113)
                                                             .+...+.+++|+|++..+++++.||.|++||+...      
T Consensus       168 ---------------------------------------~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~------  202 (343)
T 3lrv_A          168 ---------------------------------------KSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP------  202 (343)
T ss_dssp             ---------------------------------------CSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT------
T ss_pred             ---------------------------------------CCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC------
Confidence                                                   13446889999999999999999999999987632      


Q ss_pred             ceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecC---CCCCee--E
Q 001258          790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F  864 (1113)
Q Consensus       790 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~---~~~~i~--~  864 (1113)
                                      ......+.. +|...|.+++|+|++.+|+++++++|++||+.+++.+..+..   |...+.  +
T Consensus       203 ----------------~~~~~~~~~-~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          203 ----------------DQASSRFPV-DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             ----------------TSCCEECCC-CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             ----------------CCCccEEec-cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence                            221001111 278999999999999999999988999999998887666543   333444  6


Q ss_pred             EEEecCCCcEEEEEec-CCcEEEEEcccceeeeeecccccCeEEEEEcC---CCCEEEEEeCCCcEEEEeCCC
Q 001258          865 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       865 l~~s~~d~~~la~g~~-dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      ++|+| ++++|++++. |+.|+||++.+.......    .++..++|++   +.+.+++++.|+.+.++-...
T Consensus       266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            99999 8999999998 999999999765433222    5678888988   889999999999999886443

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=1.8e-26  Score=266.51  Aligned_cols=212  Identities=19%  Similarity=0.278  Sum_probs=174.3

Q ss_pred             cccCCCcceEEEEEcCC-CCeEEEEeCCCeEEEEEccCC-------ceeeeeeeeecccCCeeEEEEcCCCCeeEEEEec
Q 001258          415 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGG-------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  486 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s  486 (1113)
                      ...+|.+.|++++|+|+ +.+||+++.||.|+|||+.+.       ........+.+|...|++++|+|++.. +|++|+
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~  201 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS  201 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence            46689999999999997 789999999999999999872       112234478899999999999999885 699999


Q ss_pred             CCCcEEEEeCCCCce-------eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCC---CCeeeeeCCCCce
Q 001258          487 DDKTIKVWDATNGAK-------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWC  556 (1113)
Q Consensus       487 ~d~~i~iwd~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v  556 (1113)
                      .||+|++||+.++..       ...+.+|...|.+++|++. ++.++++++.||.|++||+++.   .....+..+...|
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            999999999987432       4567789999999999874 3469999999999999999976   3444556666667


Q ss_pred             EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC-CceEEEEccCCCCCCcCeEEECCCCC-EEE
Q 001258          557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGC-LLA  634 (1113)
Q Consensus       557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~  634 (1113)
                      .+++|+|++.                    ..+++|+.||.|++||+++ +..+..+..|  ...|.+++|+|+++ +|+
T Consensus       281 ~~i~~~p~~~--------------------~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~~~l~  338 (430)
T 2xyi_A          281 NCLSFNPYSE--------------------FILATGSADKTVALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNETILA  338 (430)
T ss_dssp             EEEEECSSCT--------------------TEEEEEETTSEEEEEETTCTTSCSEEEECC--SSCEEEEEECSSCTTEEE
T ss_pred             EEEEeCCCCC--------------------CEEEEEeCCCeEEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCCCEEE
Confidence            7666666654                    2488999999999999998 5667777765  45799999999884 799


Q ss_pred             EEECCCcEEEEEcCCC
Q 001258          635 VSTNDNGIKILATSDG  650 (1113)
Q Consensus       635 ~~~~dg~i~iwd~~~~  650 (1113)
                      +++.|+.|++||+...
T Consensus       339 s~~~d~~i~iwd~~~~  354 (430)
T 2xyi_A          339 SSGTDRRLHVWDLSKI  354 (430)
T ss_dssp             EEETTSCCEEEEGGGT
T ss_pred             EEeCCCcEEEEeCCCC
Confidence            9999999999998764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=3.1e-27  Score=264.11  Aligned_cols=234  Identities=12%  Similarity=0.071  Sum_probs=177.6

Q ss_pred             EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec--CCCEEEEEe-CCeEE
Q 001258          766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKIS  842 (1113)
Q Consensus       766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~--~~~~l~~~s-dg~i~  842 (1113)
                      +++++.|+.+++|+...             .+.+|+..++..+.....+  |...|.+++++|  +++++++++ ||+|+
T Consensus        88 ~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~s~dg~i~  152 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGN-------------QITILDSKTNKVLREIEVD--SANEIIYMYGHNEVNTEYFIWADNRGTIG  152 (343)
T ss_dssp             EEEECSTTEEEEEETTT-------------EEEEEETTTCCEEEEEECC--CSSCEEEEECCC---CCEEEEEETTCCEE
T ss_pred             eEEecCCCeEEEEEccC-------------ceEEeecCCcceeEEeecC--CCCCEEEEEcCCCCCCCEEEEEeCCCcEE
Confidence            66666666666666542             2235666666644332222  678899999999  999999998 99999


Q ss_pred             EEECCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eeecc-cccCeEEEEEcCCCCEEEE
Q 001258          843 LFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKG-HSKRITGLAFSHALNVLVS  919 (1113)
Q Consensus       843 vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~-h~~~V~~l~~s~d~~~L~s  919 (1113)
                      +||+.+++....... +...+++++|+| ++.+||+|+.||.|++||+.+++.+ ..+.+ |.+.|++++|+|++.+|++
T Consensus       153 ~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s  231 (343)
T 3lrv_A          153 FQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVV  231 (343)
T ss_dssp             EEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEE
T ss_pred             EEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEE
Confidence            999999988776643 455799999999 8999999999999999999999887 78888 9999999999999999999


Q ss_pred             EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCC--ceEEEccCCcEEEEE-c-CCeEEEEeCCccceeeccccCCCC
Q 001258          920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFLVV-H-ETQLAIFETTKLECVKQWVPRESS  995 (1113)
Q Consensus       920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~spdg~~l~~~-~-d~~v~v~d~~~~~~~~~~~~~~h~  995 (1113)
                      ++ |++|++||+.+.+....  +.....+.   ..+  .+++|+|+|++|+++ . |+.+++|++.+.......      
T Consensus       232 ~~-~~~v~iwd~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------  299 (343)
T 3lrv_A          232 EC-DQTVVCFDLRKDVGTLA--YPTYTIPE---FKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------  299 (343)
T ss_dssp             EE-SSBEEEEETTSSTTCBS--SCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------
T ss_pred             Ee-CCeEEEEEcCCCCccee--eccccccc---ccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------
Confidence            99 45999999998654221  11111111   122  369999999999994 4 999999999766533221      


Q ss_pred             CCeeEEEECC---CCCEEEEEeCCCcEEEEecCCC
Q 001258          996 APITHATFSC---DSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       996 ~~v~~l~~s~---dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      .++..++|++   +.+.+++++.||.+.++-....
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            4678889998   8999999999999998865443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-27  Score=292.50  Aligned_cols=251  Identities=12%  Similarity=0.085  Sum_probs=210.9

Q ss_pred             CCCCCccEEEEecCCCEEEEEe-CCeEEEEECC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEecCCcEEEEEcc
Q 001258          816 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       816 ~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d--~~~la~g~~dg~v~iwd~~  890 (1113)
                      +|...|++++|+|++++|++|+ ||+|+|||+.  +++....+.+|...|++++|+| +  +++|++|+.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence            3999999999999999999998 9999999998  5677888999999999999998 5  8999999999999999999


Q ss_pred             cce--eeeeecccccCeEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc----
Q 001258          891 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----  962 (1113)
Q Consensus       891 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp----  962 (1113)
                      +++  .+..+.+|...|++++|+|+  ++++++++.||+|++||+.++......   ...++.   ..|.+++|+|    
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~---~~~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI---IIDAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE---EEECCS---SCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee---EeecCC---CceEEEEecCcccc
Confidence            886  77888999999999999999  999999999999999999886432222   222333   4789999999    


Q ss_pred             ---------CCcEEEE-EcCCeEEEEeCCccc----eeeccccCCCCCCeeEEEECCC---CCEEEEEeCCCcEEEEecC
Q 001258          963 ---------DQIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       963 ---------dg~~l~~-~~d~~v~v~d~~~~~----~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                               ++.++++ +.|+.|++||+.++.    ....+  .+|...|++++|+|+   +.+|++|+.||.|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee--cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     5888888 589999999998774    33333  378999999999999   8999999999999999999


Q ss_pred             CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +++......  .....+|.+.|..  ++|+| +|.+|++|+.||.|++|++.++.
T Consensus       238 ~~~~~~~~~--~~~~~~~~~~v~~--l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          238 NEQGPWKKT--LLKEEKFPDVLWR--ASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSSCCBCC--BSSSSCCSSCCCC--EEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCcceeE--EeccCCCCCceEE--EEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            875322111  1112257777775  88899 78999999999999999999755

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.2e-25  Score=262.50  Aligned_cols=334  Identities=13%  Similarity=0.147  Sum_probs=242.4

Q ss_pred             EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc-CCCcceEEEEEcCCCCeEEEEeCCCe
Q 001258          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHI  443 (1113)
Q Consensus       365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~  443 (1113)
                      +|+|++. ++++++.|++|.+||..+++.+..                   +. +|.  +.+++|||||++|++++.|++
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~  201 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR  201 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence            3889887 689999999999999999988763                   23 443  889999999999999999999


Q ss_pred             EEEEEc--cCCceeeeeeeeecccCCeeEEEEcC----CCCeeEEEEec-CCCcEEEEeCCCCceeeEeecc--------
Q 001258          444 VQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH--------  508 (1113)
Q Consensus       444 i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----~~~~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~h--------  508 (1113)
                      |.+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.+||..+++++.++..+        
T Consensus       202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~  275 (543)
T 1nir_A          202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  275 (543)
T ss_dssp             EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence            999999  7877655   454 455689999999    999  566666 5899999999999999888642        


Q ss_pred             --C-cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          509 --E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       509 --~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                        . ..+.++.+++.. ..++++...++.|.+||+.+.+...  .+. ....+..                     +.|+
T Consensus       276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~---------------------~~~s  332 (543)
T 1nir_A          276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHD---------------------GGWD  332 (543)
T ss_dssp             EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCC---------------------EEEC
T ss_pred             cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccC---------------------ceEC
Confidence              2 268888877643 3678888899999999998755433  111 2223333                     4555


Q ss_pred             CCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEE-ECCC-CCEEEEEE-CCCcEEEEEcCCCccceecccc
Q 001258          584 TTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       584 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      |++++++++ ..+++|.+||..+++++..+........-.... ++|+ +.+++++. .|++|.+|++.+..        
T Consensus       333 pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~--------  404 (543)
T 1nir_A          333 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN--------  404 (543)
T ss_dssp             TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT--------
T ss_pred             CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCC--------
Confidence            555566655 468999999999999988886422111112233 4676 66666665 57899999986631        


Q ss_pred             ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258          660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  739 (1113)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~  739 (1113)
                      |..                                                                             
T Consensus       405 ~~~-----------------------------------------------------------------------------  407 (543)
T 1nir_A          405 HPQ-----------------------------------------------------------------------------  407 (543)
T ss_dssp             CTT-----------------------------------------------------------------------------
T ss_pred             Cch-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258          740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  819 (1113)
Q Consensus       740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~  819 (1113)
                                +...                    .++.                                  +.+  |..
T Consensus       408 ----------~~~~--------------------~v~~----------------------------------l~~--~g~  421 (543)
T 1nir_A          408 ----------YAWK--------------------KVAE----------------------------------LQG--QGG  421 (543)
T ss_dssp             ----------TBTS--------------------EEEE----------------------------------EEC--SCS
T ss_pred             ----------hcCe--------------------EEEE----------------------------------EEc--CCC
Confidence                      0000                    0000                                  000  344


Q ss_pred             CccEEEEecCCCEEEEEe--------CCeEEEEECCCCcee-eee--------cCCCCCeeEEEEecCCCcEEEEEe---
Q 001258          820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM---  879 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--------dg~i~vwd~~~~~~~-~~~--------~~~~~~i~~l~~s~~d~~~la~g~---  879 (1113)
                      .+..++++|++++|+++.        +++|.|||+.+++.. ..+        ..+...+..++|+| +|+.|.++.   
T Consensus       422 ~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~  500 (543)
T 1nir_A          422 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNG  500 (543)
T ss_dssp             CCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECC
T ss_pred             CceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecC
Confidence            566788888888888875        568999999988877 443        34567899999999 788777663   


Q ss_pred             --cCCcEEEEEcccceeeeeeccc
Q 001258          880 --DDSSIQIYNVRVDEVKSKLKGH  901 (1113)
Q Consensus       880 --~dg~v~iwd~~~~~~~~~l~~h  901 (1113)
                        .|+.|.|||..+++++..++.+
T Consensus       501 ~~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          501 KNDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             TTSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCCeEEEEECCCceEEEeecCC
Confidence              4799999999999999988754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=6e-25  Score=258.82  Aligned_cols=333  Identities=11%  Similarity=0.083  Sum_probs=244.0

Q ss_pred             EcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEc--CCCCCeeeee
Q 001258          473 FSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY--DNLGSRVDYE  550 (1113)
Q Consensus       473 ~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~--~~~~~~~~~~  550 (1113)
                      |+|++.  ++++++.|++|.+||..+++++.++..+.. +..++|+  ++|++|++++.|+.|.+||+  .+.+....+.
T Consensus       145 ~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s--pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~  219 (543)
T 1nir_A          145 LDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK  219 (543)
T ss_dssp             CCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE
T ss_pred             cCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEEC--CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe
Confidence            788887  789999999999999999999999984333 7788765  56689999999999999999  6655444444


Q ss_pred             CCCCceEEEEEcc----CCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCC--------
Q 001258          551 APGRWCTTMAYSA----DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG--------  617 (1113)
Q Consensus       551 ~~~~~v~~~~~s~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~--------  617 (1113)
                       .+..+..++|+|    +|+                     ++++++ .+++|.+||..+++++..+...+.        
T Consensus       220 -~g~~p~~va~sp~~~~dg~---------------------~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          220 -IGIEARSVESSKFKGYEDR---------------------YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             -CCSEEEEEEECCSTTCTTT---------------------EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             -cCCCcceEEeCCCcCCCCC---------------------EEEEEEccCCeEEEEeccccccceeecccCcccCccccc
Confidence             233445555555    554                     677776 589999999999999988865321        


Q ss_pred             -CCCcCeEEECCCCCE-EEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258          618 -LPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  695 (1113)
Q Consensus       618 -~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1113)
                       ...+.++.++|++.. +++...++.|.+||..+.. .+.                                        
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~-~l~----------------------------------------  316 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID-NLT----------------------------------------  316 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS-SCE----------------------------------------
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC-cce----------------------------------------
Confidence             124667888886554 4455566778888765441 000                                        


Q ss_pred             ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258          696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  775 (1113)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  775 (1113)
                                                                                +..+                  
T Consensus       317 ----------------------------------------------------------~~~i------------------  320 (543)
T 1nir_A          317 ----------------------------------------------------------VTSI------------------  320 (543)
T ss_dssp             ----------------------------------------------------------EEEE------------------
T ss_pred             ----------------------------------------------------------eEEe------------------
Confidence                                                                      0000                  


Q ss_pred             EEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceee
Q 001258          776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA  853 (1113)
Q Consensus       776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~  853 (1113)
                                                              .+...+..++|+|+|+++++++  +++|.+||+.+++++.
T Consensus       321 ----------------------------------------~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~  360 (543)
T 1nir_A          321 ----------------------------------------GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA  360 (543)
T ss_dssp             ----------------------------------------ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             ----------------------------------------ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence                                                    0223355788999999877665  7899999999999888


Q ss_pred             eecC----CCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEe
Q 001258          854 TFMP----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSG  921 (1113)
Q Consensus       854 ~~~~----~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s  921 (1113)
                      .+..    |......+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+||+++|++++
T Consensus       361 ~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~  439 (543)
T 1nir_A          361 LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT  439 (543)
T ss_dssp             EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred             eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence            7764    44433333 5774577777775 689999999998       899999999999999999999999999987


Q ss_pred             -------CCCcEEEEeCCCCccc-cccccccCCCCCCCCCCCceEEEccCCcEEEEE------cCCeEEEEeCCccceee
Q 001258          922 -------ADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVK  987 (1113)
Q Consensus       922 -------~D~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~------~d~~v~v~d~~~~~~~~  987 (1113)
                             .+++|.+||+.+.+.. ....+....+.......+..+.|+|||++++++      .++.|.|||.+|++++.
T Consensus       440 ~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~  519 (543)
T 1nir_A          440 TFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKA  519 (543)
T ss_dssp             TTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             CCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEE
Confidence                   2779999999997754 111111000001112468899999999999874      26899999999999988


Q ss_pred             ccc
Q 001258          988 QWV  990 (1113)
Q Consensus       988 ~~~  990 (1113)
                      .+.
T Consensus       520 ~i~  522 (543)
T 1nir_A          520 VVK  522 (543)
T ss_dssp             EEC
T ss_pred             eec
Confidence            876

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.7e-23  Score=239.19  Aligned_cols=303  Identities=11%  Similarity=0.083  Sum_probs=222.2

Q ss_pred             ccCCeeEEEEcCCCCeeEEEEec----CCC----cEEEEeC--CCCcee--eEeeccCcCEEEEeeeec-----------
Q 001258          464 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK-----------  520 (1113)
Q Consensus       464 h~~~V~~v~~s~~~~~~~l~s~s----~d~----~i~iwd~--~~~~~~--~~~~~h~~~v~~~~~~~~-----------  520 (1113)
                      +...+...+|.+.|.. ++++|+    .||    +|++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3457888999999887 676776    567    8999999  899987  458889888887776541           


Q ss_pred             -CCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          521 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       521 -~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                       ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|+|+                     +|++++
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~---------------------~la~~s  197 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGS---------------------KLAYVT  197 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSS---------------------EEEEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCC---------------------EEEEEE
Confidence             013456655554      7999999974 44455555556666666666665                     688888


Q ss_pred             cCC---cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEE-EEECCCc--EEEEEcCCCccceecccccccccccc
Q 001258          594 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       594 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                      .++   .|++||+.+++... +..+  ...+.+++|+|||+.|+ +++.++.  |++||+.++. . ..+.         
T Consensus       198 ~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l~---------  263 (415)
T 2hqs_A          198 FESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQVT---------  263 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EECC---------
T ss_pred             ecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeCc---------
Confidence            765   99999999988764 3333  33688999999999888 5565555  8888887652 1 1110         


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                                                                                                      
T Consensus       264 --------------------------------------------------------------------------------  263 (415)
T 2hqs_A          264 --------------------------------------------------------------------------------  263 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCceEEEEEeCCCceEEEeec-CC--eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258          748 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  824 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l  824 (1113)
                       .+...+.+++|+|||+.|+.++. ++  .+++|++.                      ++....  +..  +...+.++
T Consensus       264 -~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~----------------------~~~~~~--l~~--~~~~~~~~  316 (415)
T 2hqs_A          264 -DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNIN----------------------GGAPQR--ITW--EGSQNQDA  316 (415)
T ss_dssp             -CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT----------------------SSCCEE--CCC--SSSEEEEE
T ss_pred             -CCCCcccceEECCCCCEEEEEECCCCCcEEEEEECC----------------------CCCEEE--Eec--CCCcccCe
Confidence             14456789999999999888876 45  45555543                      333221  111  45678899


Q ss_pred             EEecCCCEEEEEe-C---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC---cEEEEEcccceeeee
Q 001258          825 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK  897 (1113)
Q Consensus       825 ~~s~~~~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~  897 (1113)
                      +|+|||++|++++ +   ..|++||+.+++.. .+..+. .+.+++|+| ++++|++++.++   .|++||+. +.....
T Consensus       317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~  392 (415)
T 2hqs_A          317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR  392 (415)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred             EECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence            9999999999887 3   47999999988764 455454 799999999 889888888777   79999987 556788


Q ss_pred             ecccccCeEEEEEcCCC
Q 001258          898 LKGHSKRITGLAFSHAL  914 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~  914 (1113)
                      +.+|.+.|.+++|+|..
T Consensus       393 l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          393 LPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCCSSSEEEEEEECCCC
T ss_pred             eeCCCCCCcCCcccccc
Confidence            89999999999999864

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=1.1e-22  Score=253.24  Aligned_cols=259  Identities=14%  Similarity=0.106  Sum_probs=175.5

Q ss_pred             CCCcEEEEEcCCCCeEEEEEec-CC-----cEEEEecCCcceeEeeeeeeec-----cCCCCcccccccccCCCcceEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~-dg-----~i~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      ...|.+++|||||++ |++++. |+     .|.+||+.+++...........     +...........-......|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            467899999999996 777776 88     8999999998765421110000     00000000000000001348899


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCc--eeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  504 (1113)
                      +|||||++|++++. +.|.+||+.++.  ...   .+..|...+.+++|||||+  +|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence            99999999999986 899999999882  233   3667888999999999999  577766 56999999998877655


Q ss_pred             eeccCcC----------------EEEEeeeecCCceEEEEEecCC---------------------------------cE
Q 001258          505 FEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------KI  535 (1113)
Q Consensus       505 ~~~h~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i  535 (1113)
                      ...+...                +.+++|+  +||++|++++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEEC--CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            4444432                3556765  5667888887765                                 67


Q ss_pred             EEEEcCC-CCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-----cCCcEEEEECCCCc
Q 001258          536 KAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSVQ  607 (1113)
Q Consensus       536 ~iwd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~  607 (1113)
                      .+||+.+ ++......  .+...+..++| |||+                     +|++++     .+..|++||+.+++
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~---------------------~l~~~~~~~~~~~~~i~~~d~~~g~  323 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQ---------------------HLSFQRQSRDQKKLDLVEVTLASNQ  323 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETT---------------------EEEEEEEETTSSEEEEEEEETTTCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCC---------------------EEEEEEecccCCeEEEEEEECCCCc
Confidence            8888876 55433221  23344555555 5555                     566544     35789999999998


Q ss_pred             eEEEEccCCCC--CCcCeEEECCCCCEEEEEECCCcEEEEEcC
Q 001258          608 LLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       608 ~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  648 (1113)
                      ....+..+...  ..+.+++|+|||+++++++.||.++||.+.
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          324 QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            87766544311  135689999999988888888888888654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=3.6e-23  Score=236.60  Aligned_cols=242  Identities=9%  Similarity=0.007  Sum_probs=178.9

Q ss_pred             CCCcEEEEEcCCCCeEEEEEe----cCC----cEEEEec--CCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs----~dg----~i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      ...|...+|++.|..++++|+    .+|    +|+|||+  .+++.+...                 .+.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence            357888999999988788887    467    8999999  888876432                 2456666777777


Q ss_pred             EcC--------------CCCeEEEEeCC------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC
Q 001258          428 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  487 (1113)
Q Consensus       428 ~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~  487 (1113)
                      +++              .+..++.++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            664              26677776654      799999998643 33   5778999999999999999  6888887


Q ss_pred             CC---cEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCc--EEEEEcCCCCCeeeeeCCCCceEEEEE
Q 001258          488 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY  561 (1113)
Q Consensus       488 d~---~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~  561 (1113)
                      |+   .|++||+.++++. .+..|...+.+++|+|  +|+.|+ +++.++.  |++||+.++.. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999998875 5677888999999875  456666 6766665  99999987543 445555556666666


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                      +|||+                     +|++++. ++  .|++||+.+++.. .+..+  ...+.+++|+|+|++|++++.
T Consensus       275 spdg~---------------------~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~--~~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          275 FPDSQ---------------------NLAFTSDQAGRPQVYKVNINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             CTTSS---------------------EEEEEECTTSSCEEEEEETTSSCCE-ECCCS--SSEEEEEEECTTSSEEEEEEE
T ss_pred             CCCCC---------------------EEEEEECCCCCcEEEEEECCCCCEE-EEecC--CCcccCeEECCCCCEEEEEEC
Confidence            66665                     5776665 44  6888899887643 33333  235778999999999988876


Q ss_pred             C---CcEEEEEcCCC
Q 001258          639 D---NGIKILATSDG  650 (1113)
Q Consensus       639 d---g~i~iwd~~~~  650 (1113)
                      +   ..|++||+.++
T Consensus       331 ~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          331 NGGQQHIAKQDLATG  345 (415)
T ss_dssp             CSSCEEEEEEETTTC
T ss_pred             cCCceEEEEEECCCC
Confidence            4   46777776554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.1e-22  Score=253.16  Aligned_cols=343  Identities=12%  Similarity=0.022  Sum_probs=225.3

Q ss_pred             CcceEEEEEcCCCCeEEEEeC-CC-----eEEEEEccCCceeeeeeeeeccc------------------------CCee
Q 001258          420 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN  469 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~-d~-----~i~iwd~~~~~~~~~~~~l~~h~------------------------~~V~  469 (1113)
                      ...|.+++|||||++|++++. |+     .|.+||+.+++...   .+..|.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     89999999987554   233332                        2389


Q ss_pred             EEEEcCCCCeeEEEEecCCCcEEEEeCCCCc--eeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee
Q 001258          470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  547 (1113)
Q Consensus       470 ~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  547 (1113)
                      +++|||||+  +|++++. +.|++||+.++.  .+..+..|...+..++|+|  ||++|+.++ ++.|++||+.++....
T Consensus       113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            999999999  5777765 999999999883  4556777888899999765  567888877 5689999998754433


Q ss_pred             eeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC-------------------------------
Q 001258          548 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-------------------------------  596 (1113)
Q Consensus       548 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------------------------  596 (1113)
                      ....+...+..    .....+. ......+..+.|+|+|++|++++.|+                               
T Consensus       187 ~~~~~~~~~~~----g~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          187 LTADGSTTIGN----GIAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             CCCCCCSSEEE----SCCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             eccCCccceec----cccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            22222221100    0000000 00000122344444444555554433                               


Q ss_pred             --cEEEEECCC-CceEEEEccCCCCCCcCeEEECCCCCEEEEEEC-----CCcEEEEEcCCCccceeccccccccccccC
Q 001258          597 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS  668 (1113)
Q Consensus       597 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  668 (1113)
                        .|++||+.+ ++.........+...+..++| |||++|++++.     +..|++||+.++. ....+..         
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~~~~~~---------  330 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QRVLAHE---------  330 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EEEEEEE---------
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eEEEEEc---------
Confidence              788999988 876554432223446789999 99999987764     3456666665541 1110000         


Q ss_pred             CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258          669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  748 (1113)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  748 (1113)
                                                                                                      
T Consensus       331 --------------------------------------------------------------------------------  330 (741)
T 2ecf_A          331 --------------------------------------------------------------------------------  330 (741)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                                           ..++                                           .-..+.+++|+|
T Consensus       331 ---------------------~~~~-------------------------------------------~~~~~~~~~~sp  346 (741)
T 2ecf_A          331 ---------------------TSPT-------------------------------------------WVPLHNSLRFLD  346 (741)
T ss_dssp             ---------------------ECSS-------------------------------------------CCCCCSCCEECT
T ss_pred             ---------------------CCCC-------------------------------------------cCCcCCceEECC
Confidence                                 0000                                           011234577888


Q ss_pred             CCCEEEEEe-CCeEEEEECC-CCceeeeecCCCCCeeEE-EEecCCCcEE-EEEecCC--cEEEEEccc-ceeeeeeccc
Q 001258          829 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH  901 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l-~~s~~d~~~l-a~g~~dg--~v~iwd~~~-~~~~~~l~~h  901 (1113)
                      ||+++++++ +|.++||.++ ++. ...+..+...+..+ .|+| +++.| ++++.++  .++||++.. ++....+.. 
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-  423 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-  423 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence            888777766 6766666654 344 67777777788887 5999 67655 5555565  899999875 555666765 


Q ss_pred             ccCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 001258          902 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW  934 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D----~~v~iwd~~~~  934 (1113)
                      ...+.+++|+|||++|+....+    ..+.+|+....
T Consensus       424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            6678999999999998876544    46889988653

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.1e-23  Score=256.48  Aligned_cols=235  Identities=9%  Similarity=0.064  Sum_probs=165.4

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc---ceEEEEEcCCCCeE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  435 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l  435 (1113)
                      ..+.+++|||||++ +++ +.||+|++||+.+++...                   ++.+|..   .|.+++|||||++|
T Consensus        17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l   75 (723)
T 1xfd_A           17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA   75 (723)
T ss_dssp             CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred             ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence            34678999999994 666 689999999999987654                   2444543   49999999999999


Q ss_pred             EEEeCC---------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          436 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       436 as~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      ++++.+         +.|.+||+.+++. ..+....+|...+.+++|||||+  .|+.++. +.|++||+.+++......
T Consensus        76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence            999874         7888999999875 32323345666799999999999  5777664 799999999988776665


Q ss_pred             ccCcCE------------------EEEeeeecCCceEEEEEecC-CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          507 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       507 ~h~~~v------------------~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      .+...+                  .+++|+|  ||+.|++++.| +.+.+|++......     ....+..+.+.++|. 
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-  223 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-  223 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence            544333                  6777764  56788887754 56778876532211     112244455555443 


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECC----
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----  639 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d----  639 (1113)
                                          .    ..+..|++||+.+++....+..+.    +...+.+++|+|||+++++....    
T Consensus       224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                1    234589999999888655555331    12357789999999988766532    


Q ss_pred             CcEEEEEcCCC
Q 001258          640 NGIKILATSDG  650 (1113)
Q Consensus       640 g~i~iwd~~~~  650 (1113)
                      ..|++||+.++
T Consensus       280 ~~i~~~d~~~g  290 (723)
T 1xfd_A          280 SILTLCDATTG  290 (723)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEeCCCC
Confidence            45677776555

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.3e-21  Score=239.82  Aligned_cols=248  Identities=8%  Similarity=0.020  Sum_probs=155.6

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcce--eEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +..+.|+  |.. +++++.++ | +||+.+|+.  .......  .+.. ...........+...|.+++|||| ++++.+
T Consensus        28 ~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~   98 (706)
T 2z3z_A           28 VVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF   98 (706)
T ss_dssp             CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEEE
T ss_pred             CCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEEE
Confidence            4557788  554 55666677 8 999999876  2211000  0000 000000000112257999999999 666665


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----CceeeEeeccCcC--
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP--  511 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~-----~~~~~~~~~h~~~--  511 (1113)
                      . ++.|++||+.+++...    +..+...+.+++|+|||+  .|+++ .|+.|++||+.+     ++.......+...  
T Consensus        99 ~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~  170 (706)
T 2z3z_A           99 T-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV  170 (706)
T ss_dssp             E-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE
T ss_pred             E-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE
Confidence            4 5999999999886543    556778899999999999  56664 689999999998     7766544444333  


Q ss_pred             ------------EEEEeeeecCCceEEEEEe---------------------------------cCCcEEEEEcCCCCCe
Q 001258          512 ------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGSR  546 (1113)
Q Consensus       512 ------------v~~~~~~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~  546 (1113)
                                  +.+++|+  +||++|++++                                 .+..|++||+.++...
T Consensus       171 ~g~~~~~ee~~~~~~~~~S--pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~  248 (706)
T 2z3z_A          171 YGQAVHQREFGIEKGTFWS--PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV  248 (706)
T ss_dssp             ESSCCGGGCTTCCCSEEEC--TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred             cccchhhhhcCCCceEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence                        3667765  5568888887                                 3467889998765433


Q ss_pred             eeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC-----cEEEEECCCCceEEEEccCCCC-
Q 001258          547 VDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL-  618 (1113)
Q Consensus       547 ~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~-  618 (1113)
                      ....  .+...+..++|+|||                     ++|++++.++     .|++||+.+++....+...... 
T Consensus       249 ~~~~~~~~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~  307 (706)
T 2z3z_A          249 YLQTGEPKEKFLTNLSWSPDE---------------------NILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKH  307 (706)
T ss_dssp             ECCCCSCTTCEEEEEEECTTS---------------------SEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSS
T ss_pred             eeccCCCCceeEeeEEEECCC---------------------CEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCC
Confidence            2221  223344555555555                     4677766665     8999999998443333211111 


Q ss_pred             --CCcCeEEECC--CCCEEEEEECCCcEEEEEcC
Q 001258          619 --PASPRIRFNK--DGCLLAVSTNDNGIKILATS  648 (1113)
Q Consensus       619 --~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~  648 (1113)
                        ..+.+++|+|  ||++++++..|+.+++|.+.
T Consensus       308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             eECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence              1346789999  99999999889988888764

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2.4e-21  Score=239.64  Aligned_cols=244  Identities=11%  Similarity=0.097  Sum_probs=172.0

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCC-----CceeeeecCCCCC--------------eeEEEEecCCCcEEEEEe
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMT-----FKTMATFMPPPPA--------------ATFLAFHPQDNNIIAIGM  879 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~la~g~  879 (1113)
                      ..+.+++|||||++|+++.++.|++||+.+     ++.......+...              +.+++||| ||++|++++
T Consensus       121 ~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~  199 (706)
T 2z3z_A          121 EETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYR  199 (706)
T ss_dssp             TCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEE
T ss_pred             ccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEE
Confidence            345667788888888877788888888877     6655444333332              58999999 899999887


Q ss_pred             ---------------------------------cCCcEEEEEcccceeeeee--cccccCeEEEEEcCCCCEEEEEeCCC
Q 001258          880 ---------------------------------DDSSIQIYNVRVDEVKSKL--KGHSKRITGLAFSHALNVLVSSGADS  924 (1113)
Q Consensus       880 ---------------------------------~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~d~~~L~s~s~D~  924 (1113)
                                                       .+..|++||+.+++.....  ..|...+.+++|+|||++|++++.|+
T Consensus       200 ~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  279 (706)
T 2z3z_A          200 MDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNR  279 (706)
T ss_dssp             EECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECT
T ss_pred             ECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCC
Confidence                                             4468999999988765443  25777899999999999999988775


Q ss_pred             -----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc--CCcEEEEE-cCCeEEEEeCC-ccceeeccccCCCC
Q 001258          925 -----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ--DQIHFLVV-HETQLAIFETT-KLECVKQWVPRESS  995 (1113)
Q Consensus       925 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp--dg~~l~~~-~d~~v~v~d~~-~~~~~~~~~~~~h~  995 (1113)
                           .|++||+.+++.........   .......+..++|+|  ||++++++ .++.+++|.+. ++..+..+.  .|.
T Consensus       280 ~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~--~~~  354 (706)
T 2z3z_A          280 AQNECKVNAYDAETGRFVRTLFVET---DKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT--KGE  354 (706)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEEE---CSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC--CSS
T ss_pred             CCCeeEEEEEECCCCceeeEEEEcc---CCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC--CCC
Confidence                 89999999873221111111   111011346789999  99988885 67788888776 566666554  456


Q ss_pred             CCeeE-EEECCCCCEEEEEeCC-C----cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-
Q 001258          996 APITH-ATFSCDSQLVYACFLD-A----TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD- 1068 (1113)
Q Consensus       996 ~~v~~-l~~s~dg~~l~s~~~D-g----~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D- 1068 (1113)
                      ..+.+ ++|+|||+.|+.++.+ +    .|+.||+.+++. ..+        .|...+.  .++|+| ||++|+.+..+ 
T Consensus       355 ~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l--------~~~~~~~--~~~~sp-dg~~l~~~~~~~  422 (706)
T 2z3z_A          355 WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL--------TPESGMH--RTQLSP-DGSAIIDIFQSP  422 (706)
T ss_dssp             SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES--------CCSSSEE--EEEECT-TSSEEEEEEECS
T ss_pred             eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec--------cCCCceE--EEEECC-CCCEEEEEecCC
Confidence            67776 8999999987765544 4    677778777653 233        2333454  488999 77887766444 


Q ss_pred             ---CcEEEEeccCCC
Q 001258         1069 ---GGVHVFEPLESE 1080 (1113)
Q Consensus      1069 ---g~v~vW~~~~~~ 1080 (1113)
                         +.|++||+.+++
T Consensus       423 ~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          423 TVPRKVTVTNIGKGS  437 (706)
T ss_dssp             SCSCEEEEEESSSCE
T ss_pred             CCCcEEEEEECCCCe
Confidence               469999998876

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=2e-21  Score=241.33  Aligned_cols=277  Identities=10%  Similarity=0.033  Sum_probs=186.7

Q ss_pred             ceEEEEEeCCCceEEEeecC---------CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          753 KISRLIFTNSGNAILALASN---------AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~d---------g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                      .|.+++|+|||+.|++++.+         +.+++||+.                      ++..... .....+...+..
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~----------------------~~~~~~l-~~~~~~~~~~~~  118 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP----------------------HGDPQSL-DPPEVSNAKLQY  118 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS----------------------SCCCEEC-CCTTCCSCCCSB
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECC----------------------CCceEec-cCCccccccccc
Confidence            46789999999999988775         566677654                      3332111 111124556889


Q ss_pred             EEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCe------------------eEEEEecCCCcEEEEEecCC---
Q 001258          824 FALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAA------------------TFLAFHPQDNNIIAIGMDDS---  882 (1113)
Q Consensus       824 l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i------------------~~l~~s~~d~~~la~g~~dg---  882 (1113)
                      ++|||||++|+.++++.|++||+.+++..+....+...+                  .+++||| ||+.|++++.|+   
T Consensus       119 ~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~  197 (723)
T 1xfd_A          119 AGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRV  197 (723)
T ss_dssp             CCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTS
T ss_pred             cEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCcc
Confidence            999999999999999999999999988776665544333                  7899999 899999887653   


Q ss_pred             -------------------------------cEEEEEcccceeeeeeccc------ccCeEEEEEcCCCCEEEEEeC---
Q 001258          883 -------------------------------SIQIYNVRVDEVKSKLKGH------SKRITGLAFSHALNVLVSSGA---  922 (1113)
Q Consensus       883 -------------------------------~v~iwd~~~~~~~~~l~~h------~~~V~~l~~s~d~~~L~s~s~---  922 (1113)
                                                     .|++||+.+++....+..+      ...+.+++|||||++|++.+.   
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~  277 (723)
T 1xfd_A          198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ  277 (723)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred             ceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCC
Confidence                                           7999999988765666654      678999999999999977653   


Q ss_pred             -CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE--E-cCC------eEEEEe-CCccc--eeecc
Q 001258          923 -DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HET------QLAIFE-TTKLE--CVKQW  989 (1113)
Q Consensus       923 -D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~--~-~d~------~v~v~d-~~~~~--~~~~~  989 (1113)
                       +..|++||+.+++...... ....+...  .....++|+|||+.|+.  + .++      .|.+|| ..+++  +...+
T Consensus       278 ~~~~i~~~d~~~g~~~~~~~-~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l  354 (723)
T 1xfd_A          278 NVSILTLCDATTGVCTKKHE-DESEAWLH--RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSI  354 (723)
T ss_dssp             CEEEEEEEETTTCCEEEEEE-EECSSCCC--CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBS
T ss_pred             CeEEEEEEeCCCCcceEEEE-eccCCEEe--ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEe
Confidence             3579999998876432110 11111000  00137899999997775  2 455      577777 44444  14444


Q ss_pred             ccCCCCCCeeE-EEECCCCCEEEEEeCC---CcEEEEecCCCc--eeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258          990 VPRESSAPITH-ATFSCDSQLVYACFLD---ATVCVFSAANLK--LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       990 ~~~~h~~~v~~-l~~s~dg~~l~s~~~D---g~v~vwd~~~~~--~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      .  .+...+.. ++|+|||++|+..+.+   +.+++|+++...  ....+..    ...|...+.  .++|+| ||++|+
T Consensus       355 ~--~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~----~~~~~~~~~--~~~~sp-dg~~l~  425 (723)
T 1xfd_A          355 T--SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC----DLVENCTYF--SASFSH-SMDFFL  425 (723)
T ss_dssp             C--CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST----TSSSSCCCC--EEEECT-TSSEEE
T ss_pred             e--cCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc----cccCCCCeE--EEEECC-CCCEEE
Confidence            3  22334544 6999999999876655   789999987532  2222220    001444555  488999 677766


Q ss_pred             EE
Q 001258         1064 LG 1065 (1113)
Q Consensus      1064 s~ 1065 (1113)
                      ..
T Consensus       426 ~~  427 (723)
T 1xfd_A          426 LK  427 (723)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=5.5e-20  Score=204.33  Aligned_cols=239  Identities=13%  Similarity=0.086  Sum_probs=171.1

Q ss_pred             EEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-CC
Q 001258          364 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH  442 (1113)
Q Consensus       364 ~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~  442 (1113)
                      ..|.+++.+++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457788888899999999999999999987653                   22344456 9999999997777665 88


Q ss_pred             eEEEEEccCCce-eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-C--cEEEEeCCCCceeeEeeccCcCEEEEeee
Q 001258          443 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH  518 (1113)
Q Consensus       443 ~i~iwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~--~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  518 (1113)
                      .|.+||+.+++. ..   .+..+..+..+++|+|+|+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999876 33   4556666666699999999  56655544 3  8999999999988887644 456788876


Q ss_pred             ecCCce-EEEEEecCCc-EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecC
Q 001258          519 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDD  595 (1113)
Q Consensus       519 ~~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d  595 (1113)
                      +  +|+ ++++...++. |.+|++..........        ....+.+         .....++|+|++++++++ ..+
T Consensus       137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~~~~~~~---------~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTG--------QEFISGG---------TRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------EEEECSS---------SSEEEEEECTTSSEEEEEETTT
T ss_pred             C--CCCEEEEEecCCCceEEEEEECCCCcEeecC--------CccccCC---------CCccceEECCCCCEEEEEeCCC
Confidence            5  445 4455556688 9999998644332111        0000111         134456666666655554 468


Q ss_pred             CcEEEEECCCCce---EEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258          596 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  650 (1113)
Q Consensus       596 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  650 (1113)
                      +.|++||+.+++.   +..+...   ..+..++|+|||++++++. .++.|.+||..++
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            9999999999988   7777643   3468999999999776665 4778999999877

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=4.7e-20  Score=206.01  Aligned_cols=281  Identities=10%  Similarity=0.133  Sum_probs=190.8

Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeee
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS  794 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~  794 (1113)
                      .+++++.++.|++|++...........+     .+...+..++|+|+|+.+++++.+ +.+.+|++...           
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~-----------   70 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD-----------   70 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT-----------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC-----------
Confidence            3445577999999999642111111111     255678899999999998888886 99999987521           


Q ss_pred             ecCeecCCCCccccc-cccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEEC---CCCceeeeecCCCCCeeEEEEe
Q 001258          795 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH  868 (1113)
Q Consensus       795 ~~~~lw~~~~g~~~~-~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s  868 (1113)
                               ++.... ..+.   ....+..++|+|++++|++++  ++.|.+||+   ...+....+..+ ..+.+++|+
T Consensus        71 ---------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s  137 (343)
T 1ri6_A           71 ---------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS  137 (343)
T ss_dssp             ---------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred             ---------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence                     111100 0011   123688999999999887776  688999999   444455555543 458999999


Q ss_pred             cCCCcEEEEEe-cCCcEEEEEccc-ceeee----eecc-cccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--Ccccc
Q 001258          869 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQK  938 (1113)
Q Consensus       869 ~~d~~~la~g~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~--~~~~~  938 (1113)
                      | ++++|++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|++++|+.++ .++.|.+|+++.  ++...
T Consensus       138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            9 888777777 899999999987 64432    2232 335788999999999776554 789999999964  32211


Q ss_pred             ccccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCC--c--cceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          939 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       939 ~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~--~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      ................+..++|+|+|++|++ . .++.|.+|++.  +  .+.+..+.  .+. .+.+++|+|||++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence            1111111111111124567999999998886 4 67899999998  3  33444333  223 3899999999999888


Q ss_pred             Ee-CCCcEEEEec--CCCce
Q 001258         1013 CF-LDATVCVFSA--ANLKL 1029 (1113)
Q Consensus      1013 ~~-~Dg~v~vwd~--~~~~~ 1029 (1113)
                      ++ .|+.|.+|++  .+++.
T Consensus       294 ~~~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          294 AGQKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             ECTTTCEEEEEEEETTTTEE
T ss_pred             ecCCCCeEEEEEEcCCCcee
Confidence            88 6899999955  46643

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=4e-20  Score=205.42  Aligned_cols=285  Identities=13%  Similarity=0.060  Sum_probs=196.2

Q ss_pred             EEEeCCCce-EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE
Q 001258          757 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  835 (1113)
Q Consensus       757 ~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~  835 (1113)
                      ..|.++++. +++...++.|.+||...                      +....... .  +...+ .++|+|+|+++++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~   56 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDT----------------------LEILNQIT-L--GYDFV-DTAITSDCSNVVV   56 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTT----------------------CCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcc----------------------cceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence            345555555 55666679999988653                      33222111 1  34445 9999999997777


Q ss_pred             Ee--CCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCC---cEEEEEcccceeeeeecccccCeEEEE
Q 001258          836 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA  909 (1113)
Q Consensus       836 ~s--dg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~v~iwd~~~~~~~~~l~~h~~~V~~l~  909 (1113)
                      ++  ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++   .|.+||+.+++.+..+..+ ..+.+++
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~  134 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIA  134 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceE
Confidence            65  68999999999887 666766666555599999 888888665553   8999999999988877654 4568999


Q ss_pred             EcCCCCEEEEE-eCCCc-EEEEeCCCCcccccc-ccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCCccc
Q 001258          910 FSHALNVLVSS-GADSQ-LCVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTKLE  984 (1113)
Q Consensus       910 ~s~d~~~L~s~-s~D~~-v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~~~~  984 (1113)
                      |+|||++|+++ ..++. |.+|++......... ......+     ..+..++|+|||+++++ + .++.|.+||+.+++
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGG-----TRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSS-----SSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCC-----CCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            99999865554 55688 999999864322111 1111111     24689999999997766 4 57899999999998


Q ss_pred             e---eeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCce--eeecCCCcccCCCcccCccceEEEEeCCC
Q 001258          985 C---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus       985 ~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~--~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
                      .   +..+..   ...+..++|+|||++|++++ .++.|.+||+.+++.  +..+...............  .++|+| |
T Consensus       210 ~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~sp-d  283 (331)
T 3u4y_A          210 NITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGAN--QMALNK-T  283 (331)
T ss_dssp             SCEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCC--CEEECT-T
T ss_pred             ccceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCccccc--ceEECC-C
Confidence            8   666542   46778999999999877665 478899999999887  3322211000001011112  378999 6


Q ss_pred             CCEEEE-EeCCCcEEEEeccCCC
Q 001258         1059 PNEFAL-GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1059 ~~~l~s-~~~Dg~v~vW~~~~~~ 1080 (1113)
                      |++|++ +..+++|.+||+.+..
T Consensus       284 g~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          284 ETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             SSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCEEEEecCCCCcEEEEEecCCc
Confidence            777655 4556799999998766

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=3.5e-20  Score=207.05  Aligned_cols=243  Identities=12%  Similarity=0.138  Sum_probs=172.2

Q ss_pred             CCCCccEEEEecCCCEEEEEe-C-CeEEEEECC--CCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEc
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV  889 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~  889 (1113)
                      +...+.+++|+|+|++|++++ + +.|.+|++.  +++  .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            556788999999999998887 4 899999997  444  334454433 789999999 788776665 4889999999


Q ss_pred             ---ccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-Ccccccc--ccccCCCCCCCCCCCceEEEcc
Q 001258          890 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       890 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~-~~~~~~~--~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                         .+.+.+..+..+ ..+.+++|+|++++|++++ .|+.|++||+.+ ++.....  ......+     ..+..++|+|
T Consensus       114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p  187 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP  187 (343)
T ss_dssp             ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred             CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence               445555666544 4588999999999888887 899999999987 4322111  1121112     2567899999


Q ss_pred             CCcEEEE-E-cCCeEEEEeCCc--cce--eeccc--cCCC--CCCeeEEEECCCCCEEEEEe-CCCcEEEEecC--C--C
Q 001258          963 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYACF-LDATVCVFSAA--N--L 1027 (1113)
Q Consensus       963 dg~~l~~-~-~d~~v~v~d~~~--~~~--~~~~~--~~~h--~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~--~--~ 1027 (1113)
                      +|+++++ + .++.+.+|++..  ++.  .....  ..++  ...+..++|+|||++|+++. .|+.|++||+.  +  .
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            9998766 4 678999999953  432  11111  1111  34677899999999887544 78999999998  3  3


Q ss_pred             ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe-CCCcEEEEeccC
Q 001258         1028 KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLE 1078 (1113)
Q Consensus      1028 ~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~-~Dg~v~vW~~~~ 1078 (1113)
                      +.+..+.       .+.. +.  .++|+| ||++|++++ .|+.|.+|++..
T Consensus       268 ~~~~~~~-------~~~~-~~--~~~~s~-dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          268 SKEGFQP-------TETQ-PR--GFNVDH-SGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             EEEEEEE-------CSSS-CC--CEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred             EEeeeec-------CCCc-cc--eEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence            3333332       1212 33  488999 678877777 689999996653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=2.4e-19  Score=201.19  Aligned_cols=246  Identities=11%  Similarity=0.077  Sum_probs=181.3

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEec------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      ......+..++|+|+|++++++...      ++.|.+||..+++.+....                    ....+..++|
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   96 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI   96 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence            3456788999999999975554433      6789999999988765311                    1234678999


Q ss_pred             cCCCCeEEEE-eCCCeEEEEEccCCceeeeeeeeecccC---------CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          429 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       429 spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      +|||++++++ ..++.|.+||..+++.+.   .+..+..         .+.+++|+|+++.+++...+.++.|.+||+.+
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            9999966655 557999999999988665   3333322         27899999999953322224688999999999


Q ss_pred             CceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC----CCCceEEEEEccCCCeEEecccc
Q 001258          499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA----PGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       499 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ++.+..+..+...+..++|++  ++.++++++.++.|.+||..+.+....+..    +...+..                
T Consensus       174 ~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----------------  235 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFIN----------------  235 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEE----------------
T ss_pred             CceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccce----------------
Confidence            999888876666677778764  557899999999999999988665554443    2223334                


Q ss_pred             CceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCC
Q 001258          575 RSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  650 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  650 (1113)
                           ++|+|+++++++++ .++.|.+||..+++.+..+....    ...++|+|++++++++. .++.|.+||..++
T Consensus       236 -----~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          236 -----ISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             -----EEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             -----EEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence                 44555555566655 45999999999999888887542    26799999999766665 6899999998776

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.86  E-value=4e-19  Score=199.33  Aligned_cols=273  Identities=11%  Similarity=0.109  Sum_probs=204.6

Q ss_pred             cCceEEEEEeCCCceEEEeec-------CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccE
Q 001258          751 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  823 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~  823 (1113)
                      ...+..++++|+++.+++++.       ++.|.+||..                      ++.......    ....+..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~----------------------~~~~~~~~~----~~~~~~~   93 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPV----------------------TLEVTQAIH----NDLKPFG   93 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTT----------------------TCCEEEEEE----ESSCCCS
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCC----------------------CCeEEEEEe----cCCCcce
Confidence            456789999999998887774       4567777654                      333222211    2334678


Q ss_pred             EEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCC---------eeEEEEecCCCcEEEEEe--cCCcEEEEEcc
Q 001258          824 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  890 (1113)
Q Consensus       824 l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~---------i~~l~~s~~d~~~la~g~--~dg~v~iwd~~  890 (1113)
                      ++++|+|++++++.  ++.|.+||..+++.+..+..+...         +.+++|+| +++++++++  .++.|.+||..
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence            99999999777665  689999999999988777654322         68899999 777766665  47899999999


Q ss_pred             cceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          891 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      +++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++........ ..++   ...+..++|+|+|++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~---~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL-DDGK---EHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC-CSSS---CCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC-CCCC---CcccceEEECCCCCEEEEE
Confidence            99998888867777899999999999999999999999999986643221110 1111   1245779999999988774


Q ss_pred             --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258          971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus       971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
                        .++.|.+||..+++.+..+...    ....++|+|||+++++++ .++.|.+||..+++.+..+...        .  
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~--------~--  314 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTP--------T--  314 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECC--------S--
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecC--------C--
Confidence              4589999999999988777642    236799999999766665 6899999999999988776511        1  


Q ss_pred             cceEEEEeCCCCCEEEEEeCCC
Q 001258         1048 HPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus      1048 ~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
                      .+..++|+| ||++|+++..++
T Consensus       315 ~~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          315 HPNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             EEEEEEECT-TSCEEEEEEECC
T ss_pred             CCCeEEEcC-CCCEEEEEEccc
Confidence            234588998 678766666553

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=1.2e-19  Score=202.06  Aligned_cols=197  Identities=12%  Similarity=0.065  Sum_probs=149.8

Q ss_pred             cEEEEecCCCEEEEE-------------eCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          822 PCFALSKNDSYVMSA-------------SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~-------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                      .+++|+|+|++++++             .++.|.+||+.+++....+.. ...+.+++|+| ++++|+++  ++.|++||
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d  160 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMD  160 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEE
T ss_pred             cceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEE
Confidence            345666666655555             368999999999888777764 44578899999 88877777  68999999


Q ss_pred             cccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC------------------------cEEEEeCCCCcccccccccc
Q 001258          889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------QLCVWSSDGWEKQKNRFLQI  944 (1113)
Q Consensus       889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~------------------------~v~iwd~~~~~~~~~~~~~~  944 (1113)
                      +.+++.+..+..+... ..+.|+||++.|+..+.++                        .|.+||+.+++...   ...
T Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~  236 (337)
T 1pby_B          161 PEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM---REV  236 (337)
T ss_dssp             TTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE---EEE
T ss_pred             CCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE---eec
Confidence            9999888777654411 1237899998776554332                        46899998866431   111


Q ss_pred             CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      . .+.   ..+..++|+|||++++++ ++.|.+||+.+++.+..+..   ...+.+++|+|||++|++++.++.|++||+
T Consensus       237 ~-~~~---~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~  308 (337)
T 1pby_B          237 R-IMD---VFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDA  308 (337)
T ss_dssp             E-ECS---SCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred             C-CCC---CceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence            1 111   245789999999999988 79999999999988777653   346789999999999999999999999999


Q ss_pred             CCCceeeecC
Q 001258         1025 ANLKLRCRIN 1034 (1113)
Q Consensus      1025 ~~~~~~~~~~ 1034 (1113)
                      .+++.+..+.
T Consensus       309 ~~~~~~~~~~  318 (337)
T 1pby_B          309 ETLEKKGQVD  318 (337)
T ss_dssp             TTCCEEEEEE
T ss_pred             cCCcEEEEEE
Confidence            9999988876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.85  E-value=7.2e-20  Score=203.91  Aligned_cols=267  Identities=11%  Similarity=0.063  Sum_probs=197.9

Q ss_pred             ceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC-CccEEEEecCCCEEEEEe--CCe
Q 001258          764 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK  840 (1113)
Q Consensus       764 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~-~v~~l~~s~~~~~l~~~s--dg~  840 (1113)
                      +.+++++.++.|.+||...                      +..+.....+  +.. .+..++|+|+|++++++.  ++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~~----------------------~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~   57 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEK----------------------MAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES   57 (337)
T ss_dssp             EEEEEEETTTEEEEEETTT----------------------TEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred             cEEEEcCCCCeEEEEECCC----------------------CcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence            3578888899999998753                      2222111101  211 478899999998776655  689


Q ss_pred             EEEEECCCCceeeeecCCC-----CCeeEEEEecCCCcEEEEEe------------cCCcEEEEEcccceeeeeeccccc
Q 001258          841 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~------------~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      |.+||+.+++.+..+....     ..+..++|+| ++++|+++.            .++.|.+||+.+++.+..+.. ..
T Consensus        58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence            9999999998877665321     2577899999 888888876            579999999999888877764 45


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCC--------
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--------  973 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~--------  973 (1113)
                      .+.+++|+||+++|+++  ++.|++||+.+++....    ...+..     ...+.|+|||++++++  .++        
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~----~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED----KPIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE----ECSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee----eecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence            68889999999988888  68899999998654321    111110     1223789998877653  222        


Q ss_pred             ---------------eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcc
Q 001258          974 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus       974 ---------------~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
                                     .|.+||+.+++.. ......+...+.+++|+|||++|+++  ++.|++||+.+++.+..+..   
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~---  278 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPL---  278 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEEC---
T ss_pred             cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecC---
Confidence                           4789999998876 43334556788899999999999988  79999999999988876641   


Q ss_pred             cCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258         1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus      1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
                         +  ..+.  .++|+| ||++|++++.|+.|.+||+.+++.
T Consensus       279 ---~--~~~~--~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          279 ---P--HSYY--SVNVST-DGSTVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             ---S--SCCC--EEEECT-TSCEEEEESBSSEEEEEETTTCCE
T ss_pred             ---C--Ccee--eEEECC-CCCEEEEEcCCCcEEEEECcCCcE
Confidence               1  2233  588998 788888889999999999999883

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=2.6e-19  Score=200.33  Aligned_cols=248  Identities=11%  Similarity=0.138  Sum_probs=167.8

Q ss_pred             CCCCccEEEEecCCCEEEEEe---CCeEEEEECCCCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEcc
Q 001258          817 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR  890 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~  890 (1113)
                      +...+..++|+|||++++++.   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345677899999999443433   3789999997665  3344445667789999999 888888777 78999999996


Q ss_pred             c-c--eeeeeecc---------cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccccccCCCCCCCCCCCce
Q 001258          891 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR  957 (1113)
Q Consensus       891 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~  957 (1113)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 2  33333321         12348899999999966677778899999998 333211111112222     24578


Q ss_pred             EEEccCCcEEEEE--cCCeEEEEeCCc--ccee--eccccCCC----CCCeeEEEECCCCCEEE-EEeCCCcEEEEecCC
Q 001258          958 VQFHQDQIHFLVV--HETQLAIFETTK--LECV--KQWVPRES----SAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1026 (1113)
Q Consensus       958 ~~~spdg~~l~~~--~d~~v~v~d~~~--~~~~--~~~~~~~h----~~~v~~l~~s~dg~~l~-s~~~Dg~v~vwd~~~ 1026 (1113)
                      ++|+|||++++++  .++.+.+|++..  ++..  ..+.....    ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999977773  568899999874  4432  22211110    14588999999999875 555689999999973


Q ss_pred             C---ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-CcEEEEec--cCCC
Q 001258         1027 L---KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEP--LESE 1080 (1113)
Q Consensus      1027 ~---~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-g~v~vW~~--~~~~ 1080 (1113)
                      .   +.+..+.       .+...+.  .++|+| ||++|++++.+ +.|.+|++  .+++
T Consensus       272 ~g~~~~~~~~~-------~~~~~~~--~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQQIS-------TEGDFPR--DFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEEEEE-------CSSSCCC--EEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeEEEe-------cCCCCcC--eEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence            2   3333332       2223333  588999 78888777654 89999955  4555

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.3e-19  Score=197.43  Aligned_cols=233  Identities=13%  Similarity=0.039  Sum_probs=172.3

Q ss_pred             CCCCccEEEEecCCCEEEEEeCCeEEEEECCC-CceeeeecCC-CCCeeEEEEecCCCcEEEEEe--cCCcEEEE--Ecc
Q 001258          817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPP-PPAATFLAFHPQDNNIIAIGM--DDSSIQIY--NVR  890 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~-~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~--~dg~v~iw--d~~  890 (1113)
                      |...+.+++|+|+|++|++++++.|++||+.+ ++.......+ ...+.+++|+| ++++|++++  .++...||  ++.
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence            67789999999999999999999999999998 8777666555 36789999999 899999988  33455555  444


Q ss_pred             cceeeeeecccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          891 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      +++ ...+..+. .+..++|+||+++|+ +++.|+.+++|+++.....   ... ...+.   ..+..++|+|+|+++++
T Consensus       119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred             CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence            444 34444443 489999999999887 7788999999996532211   111 11111   36789999999998887


Q ss_pred             -E-cCCeEEEEeCC-ccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----------CcEEEEecCCCceeeecCC
Q 001258          970 -V-HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       970 -~-~d~~v~v~d~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----------g~v~vwd~~~~~~~~~~~~ 1035 (1113)
                       + .++.+++|++. .+..+..+.  .|...+.+++|+|||++|++++.+           +.|++||+.+++...... 
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-  266 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-  266 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred             EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence             4 47889999876 444555544  567789999999999999988876           569999999886643221 


Q ss_pred             CcccCCCcccCccceEEEEeCCCCCEEEEEeCCC
Q 001258         1036 SAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG 1069 (1113)
Q Consensus      1036 ~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg 1069 (1113)
                         . .+|...+..  ++|+| |+++|++++.|.
T Consensus       267 ---~-~~~~~~~~~--~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          267 ---L-FGGQGTMNS--PNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             ---E-EESTTTSCS--CCBCT-TSSEEEEEEECC
T ss_pred             ---c-CCCCccccc--ceECC-CCCEEEEEEecc
Confidence               0 145556665  78888 788888777664

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=3.9e-19  Score=220.22  Aligned_cols=285  Identities=10%  Similarity=0.039  Sum_probs=189.5

Q ss_pred             eEEEEEeCCCceEEEeec---------CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258          754 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  824 (1113)
Q Consensus       754 i~~~~~s~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l  824 (1113)
                      +.+++|||||+.|+.++.         ++.+++|++..                      +..+..  ..  ....+..+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~----------------------g~~~~~--~~--l~~~~~~~  115 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN----------------------GEFVRG--NE--LPRPIQYL  115 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT----------------------TEECCS--SC--CCSSBCCE
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC----------------------Cccccc--ee--cCcccccc
Confidence            668899999999988876         57888877653                      332100  00  12457889


Q ss_pred             EEecCCCEEEEEeCCeEEEEECCCCceeeee-cCCCCC-----------------eeEEEEecCCCcEEEEEecCC----
Q 001258          825 ALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPA-----------------ATFLAFHPQDNNIIAIGMDDS----  882 (1113)
Q Consensus       825 ~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~-~~~~~~-----------------i~~l~~s~~d~~~la~g~~dg----  882 (1113)
                      +|||||+.|+++.++.|++|++.+++..+.. .++...                 ..+++||| ||++||+++.|.    
T Consensus       116 ~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~~  194 (719)
T 1z68_A          116 CWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDIP  194 (719)
T ss_dssp             EECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTSC
T ss_pred             eECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCCc
Confidence            9999999999999999999999888765433 222221                 25899999 899999987652    


Q ss_pred             ------------------------------cEEEEEcccceee--------eeecccccCeEEEEEcCCCCEEEEEeCC-
Q 001258          883 ------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD-  923 (1113)
Q Consensus       883 ------------------------------~v~iwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~L~s~s~D-  923 (1113)
                                                    .|++||+.+++..        ..+.+|...+.+++||||++++++.... 
T Consensus       195 ~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~  274 (719)
T 1z68_A          195 VIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRV  274 (719)
T ss_dssp             EEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESS
T ss_pred             eEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccc
Confidence                                          7889999987653        2245688899999999998877775433 


Q ss_pred             ---CcEEEEe----CCCCccccccccc-cCCCCCCCCCCCc-----eEEEccCCcEEEE--E-cCC--eEEEEeCCccce
Q 001258          924 ---SQLCVWS----SDGWEKQKNRFLQ-IPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC  985 (1113)
Q Consensus       924 ---~~v~iwd----~~~~~~~~~~~~~-~~~~~~~~~~~i~-----~~~~spdg~~l~~--~-~d~--~v~v~d~~~~~~  985 (1113)
                         ..|.+||    +.+++...  ... ...++.   ..+.     .++|+|||+.++.  + .++  .|.+||+.+++.
T Consensus       275 ~~~~~l~~~d~~~~~~~g~~~~--~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~  349 (719)
T 1z68_A          275 QNVSVLSICDFREDWQTWDCPK--TQEHIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA  349 (719)
T ss_dssp             TTEEEEEEEEECSSSSSEECCG--GGEEEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred             cCeEEEEEEcccCCCCCCceEE--EEecccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence               2488899    77654322  110 001222   1333     7899999997655  3 333  688888887763


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCC--Cce-eeecCCCcccCCCcccCccceEEEEeCC
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSNVHPLVIAAHPQ 1057 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~--~~~-~~~~~~~~~~~~gh~~~v~~i~~~~~p~ 1057 (1113)
                       ..+.  .+...+..+.++ |++.|+..+.+     +.+++|.+..  +.. ...+..  .+ .+|...+.  .+.|+| 
T Consensus       350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~-~~~~~~~~--~~~~s~-  419 (719)
T 1z68_A          350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HL-RKERCQYY--TASFSD-  419 (719)
T ss_dssp             -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TT-TTTTBCBE--EEEECG-
T ss_pred             -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--cc-CCCCCceE--EEEECC-
Confidence             3333  345568888888 88887766655     8889998754  421 222220  00 12444444  378888 


Q ss_pred             CCCEEE-EEeCC--CcEEEEeccCCC
Q 001258         1058 EPNEFA-LGLSD--GGVHVFEPLESE 1080 (1113)
Q Consensus      1058 d~~~l~-s~~~D--g~v~vW~~~~~~ 1080 (1113)
                      |+++++ +++.+  ..+.+|++.+++
T Consensus       420 dg~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          420 YAKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             GGSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             CCCEEEEEcCCCCCCeEEEEECCCCC
Confidence            555554 45444  478899998876

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=5.2e-19  Score=192.73  Aligned_cols=240  Identities=15%  Similarity=0.109  Sum_probs=171.2

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCC-cceeEeeeeeeeccCCCCcccccccccCC-CcceEEEEE
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIW  428 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~  428 (1113)
                      ...+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++...                   +..+| ...|.+++|
T Consensus        34 ~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~~~~   92 (297)
T 2ojh_A           34 MRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNNDHGI   92 (297)
T ss_dssp             EEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSCCEE
T ss_pred             eeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccceEE
Confidence            4455668999999999999996 66665 88999999998 76543                   23344 468899999


Q ss_pred             cCCCCeEEEEe--CCCeEEEEEc--cCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCceee
Q 001258          429 SPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQY  503 (1113)
Q Consensus       429 spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~  503 (1113)
                      +|||++|++++  .++.+.||.+  .++. ..   .+..+ ..+.+++|+|+++. ++++++.|+.++||++. .+....
T Consensus        93 spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~  166 (297)
T 2ojh_A           93 SPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVET  166 (297)
T ss_dssp             CTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCcce
Confidence            99999999998  3345555554  4544 22   34333 35999999999995 34478889999999964 234456


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcC-CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      .+..|...+.+++|++  ++.+|+.++ .++.+++|++. .......+..+...+..++|+|+|+               
T Consensus       167 ~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---------------  229 (297)
T 2ojh_A          167 RLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGD---------------  229 (297)
T ss_dssp             ECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSS---------------
T ss_pred             EcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCC---------------
Confidence            6777888999999875  446666555 59999999987 3344444444444555555555554               


Q ss_pred             ecCCCCEEEEEecC-----------CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC
Q 001258          582 FDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  640 (1113)
Q Consensus       582 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  640 (1113)
                            +|++++.+           +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus       230 ------~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          230 ------KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             ------EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             ------EEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence                  66666654           569999999887654443222344688999999999998887654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=4.7e-18  Score=194.54  Aligned_cols=259  Identities=13%  Similarity=0.140  Sum_probs=172.6

Q ss_pred             CceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          752 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      ..+..+++++++..+++++.++ +++|+...........   .....+........       ..+...|.+++|+|+|+
T Consensus        37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg~  105 (434)
T 2oit_A           37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQGLL-------VPMKFPIHHLALSCDNL  105 (434)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCCEE-------ECCSSCEEEEEECTTSC
T ss_pred             CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcccc-------ccCCCcccEEEEcCCCC
Confidence            4578899999999999998887 8888764321100000   00000000000000       12566799999999999


Q ss_pred             EEE----EEe-CCeEEEEECCCC--------ce---eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          832 YVM----SAS-GGKISLFNMMTF--------KT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       832 ~l~----~~s-dg~i~vwd~~~~--------~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      +|+    +++ |++|+|||+.++        +.   +..+.+|...|.+++|+|+++.+|++++.||.|++||+.++..+
T Consensus       106 ~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~  185 (434)
T 2oit_A          106 TLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV  185 (434)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE
T ss_pred             EEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce
Confidence            999    555 799999998764        11   35566788999999999955899999999999999999998777


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEccCCcEEEE--EcC
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLV--VHE  972 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~spdg~~l~~--~~d  972 (1113)
                      ....+|...|++++|+|+|++|++++.|++|++||++ ++....  +..... .......+.+++|++++.++++  ..+
T Consensus       186 ~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~--~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~d  262 (434)
T 2oit_A          186 CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKV--IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAAD  262 (434)
T ss_dssp             EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEE--ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETT
T ss_pred             eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccccc--ccCCcccCCCCceeEEEEEEecCceEEEEEccCC
Confidence            7777899999999999999999999999999999998 322111  111111 0011136889999999998877  244


Q ss_pred             C------eEEEEeCCccce-----eecccc-----CCCCCCeeEEEECCCCCEEEEEeCC-CcEEEEec
Q 001258          973 T------QLAIFETTKLEC-----VKQWVP-----RESSAPITHATFSCDSQLVYACFLD-ATVCVFSA 1024 (1113)
Q Consensus       973 ~------~v~v~d~~~~~~-----~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~D-g~v~vwd~ 1024 (1113)
                      +      .+++|++.+.+.     ...+..     .+...+-..+.+-+|.+++++++.. +.|.|...
T Consensus       263 g~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          263 GTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             CCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             CccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            3      389999976521     111110     0112222233344777777666543 33555543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=2.7e-18  Score=191.92  Aligned_cols=278  Identities=13%  Similarity=0.135  Sum_probs=182.0

Q ss_pred             CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec---CCeEEEEEccccccCCCCceeeeecCe
Q 001258          722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ  798 (1113)
Q Consensus       722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~  798 (1113)
                      .++.+.+|.++....  ....+...  .+......++|+|+|+ +++++.   ++.|.+|++..+...            
T Consensus        14 ~~~~i~v~~~d~~tg--~~~~~~~~--~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------   76 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK--TLTNDGLL--AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------   76 (347)
T ss_dssp             SCCEEEEEEEETTTT--EEEEEEEE--EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------
T ss_pred             CCCCEEEEEEcCCCC--eEEEeeee--eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------
Confidence            456788888875221  22221111  1445677899999999 666554   589999987532110            


Q ss_pred             ecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCC-Cc--eeeeecC---------CCCCeeE
Q 001258          799 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK--TMATFMP---------PPPAATF  864 (1113)
Q Consensus       799 lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~-~~--~~~~~~~---------~~~~i~~  864 (1113)
                              .+.. ..  .+...+..++|+|||++|++++  ++.|.+|++.. +.  .+..+..         ....+.+
T Consensus        77 --------~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  145 (347)
T 3hfq_A           77 --------KLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY  145 (347)
T ss_dssp             --------EEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred             --------Eeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence                    0000 00  1456688999999999988887  68999999962 22  2333321         1234788


Q ss_pred             EEEecCCCcEEEEEecCCcEEEEEcc-cceee--eeeccc-ccCeEEEEEcCCCCEEEE-EeCCCcEEEEeCCC--Cccc
Q 001258          865 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVK--SKLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ  937 (1113)
Q Consensus       865 l~~s~~d~~~la~g~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~d~~~L~s-~s~D~~v~iwd~~~--~~~~  937 (1113)
                      ++|+| +++++++...++.|++|++. +++..  ..+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++..
T Consensus       146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999 77777777778899999998 45432  222222 236788999999996665 45788999999875  3221


Q ss_pred             cccccccCCCCCCCCCCCceEEEccCCcEEEE-E-cCCeEEEEeCCc-c--ceeeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~-~d~~v~v~d~~~-~--~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      .................+..++|+|||++|++ . .++.|.+|++.. +  +.+..+.  .+...+..++|+|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence            11111111111111124678999999998866 3 578999999973 2  3333333  44567899999999999988


Q ss_pred             EeCC-CcEEEE--ecCCCcee
Q 001258         1013 CFLD-ATVCVF--SAANLKLR 1030 (1113)
Q Consensus      1013 ~~~D-g~v~vw--d~~~~~~~ 1030 (1113)
                      ++.+ +.|.+|  |..++++.
T Consensus       303 ~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          303 VNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EETTTTEEEEEEECTTTCCEE
T ss_pred             EEcCCCcEEEEEEeCCCCeEE
Confidence            8765 899999  55667665

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.82  E-value=3.6e-18  Score=195.43  Aligned_cols=198  Identities=14%  Similarity=0.080  Sum_probs=142.0

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE-
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-  436 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-  436 (1113)
                      ...++.+++++++.+ +++|+.++ |+||+.........   ...+. .............|.+.|.+++|+|+|++|| 
T Consensus        36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            346899999999994 88888787 89988643211000   00000 0000001111234667899999999999999 


Q ss_pred             ---EEeCCCeEEEEEccCC--------ceeeeeeeeecccCCeeEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258          437 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       437 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~  504 (1113)
                         +|+.|+.|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.|++|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7888999999999865        223334467789999999999998 56  799999999999999999987777


Q ss_pred             eeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC-------CceEEEEEccCCC
Q 001258          505 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-------RWCTTMAYSADGT  566 (1113)
Q Consensus       505 ~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~v~~~~~s~~~~  566 (1113)
                      ..+|...|.+++|+++  |.+|++|+.||.|++||++ ......+..+.       ..+.+++|++++.
T Consensus       188 ~~~~~~~v~~v~wspd--g~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~  253 (434)
T 2oit_A          188 TLPSTVAVTSVCWSPK--GKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYV  253 (434)
T ss_dssp             EECGGGCEEEEEECTT--SSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTE
T ss_pred             ccCCCCceeEEEEcCC--CCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCce
Confidence            7889999999998764  5899999999999999998 34443333221       1455555555443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=8.2e-19  Score=217.28  Aligned_cols=234  Identities=13%  Similarity=0.117  Sum_probs=153.6

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc---ceEEEEEcCCCCeEEEEe
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~las~~  439 (1113)
                      .++|+|||+ ++++ +.|++|++||+.+++....                   +.+|..   .|.+++|||||++||+++
T Consensus        20 ~~~~s~dg~-~~~~-~~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~~   78 (719)
T 1z68_A           20 FPNWISGQE-YLHQ-SADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLES   78 (719)
T ss_dssp             CCEESSSSE-EEEE-CTTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred             ccEECCCCe-EEEE-cCCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEEe
Confidence            679999996 4555 4699999999999886542                   233322   489999999999999987


Q ss_pred             C---------CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccC
Q 001258          440 S---------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHE  509 (1113)
Q Consensus       440 ~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~  509 (1113)
                      .         ++.|++||+.+++.+... .+   ...+.+++|||||+  .|+.++ |+.|++||+.+++..... .++.
T Consensus        79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~  151 (719)
T 1z68_A           79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE  151 (719)
T ss_dssp             EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred             cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence            6         789999999998752100 12   25689999999999  466665 789999999888765432 3333


Q ss_pred             cCE-----------------EEEeeeecCCceEEEEEecCC----------------------------------cEEEE
Q 001258          510 APV-----------------YSVCPHHKENIQFIFSTALDG----------------------------------KIKAW  538 (1113)
Q Consensus       510 ~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~iw  538 (1113)
                      ..|                 .+++|+  +||++|++++.|.                                  .|++|
T Consensus       152 ~~v~~g~~~~v~~ee~~~~~~~~~wS--PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          152 NKIFNGIPDWVYEEEMLATKYALWWS--PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             TTEEESSCCHHHHHHTTCSSCCEEEC--TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             CCeEcccccceeeeecccCcccEEEC--CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence            323                 366765  5668898887652                                  56777


Q ss_pred             EcCCCCCe--ee------eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC----CcEEEEE----
Q 001258          539 LYDNLGSR--VD------YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----FSIKFWD----  602 (1113)
Q Consensus       539 d~~~~~~~--~~------~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~i~iwd----  602 (1113)
                      |+.++...  ..      +..+...+..++|+||++                     .+++....    ..|.+||    
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~---------------------~~~~~~~~~~~~~~l~~~d~~~~  288 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDER---------------------VCLQWLKRVQNVSVLSICDFRED  288 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSE---------------------EEEEEEESSTTEEEEEEEEECSS
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCe---------------------EEEEEeccccCeEEEEEEcccCC
Confidence            77654431  11      112334455555555543                     44443322    3488899    


Q ss_pred             CCCCceEEEE----ccCCCCCCcC-----eEEECCCCCEEEE--EECCCc--EEEEEcCC
Q 001258          603 MDSVQLLTSI----DADGGLPASP-----RIRFNKDGCLLAV--STNDNG--IKILATSD  649 (1113)
Q Consensus       603 ~~~~~~~~~~----~~~~~~~~v~-----~~~~s~~~~~l~~--~~~dg~--i~iwd~~~  649 (1113)
                      ..+++....+    ..+  ...+.     .+.|+|||+.++.  ...+|.  |.+|++.+
T Consensus       289 ~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~  346 (719)
T 1z68_A          289 WQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV  346 (719)
T ss_dssp             SSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred             CCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence            7777654433    222  23454     7899999996554  445554  44455443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=3.1e-18  Score=206.10  Aligned_cols=234  Identities=10%  Similarity=0.042  Sum_probs=168.5

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEec-CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC-cceEEEEEcCCCCe
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSL  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~  434 (1113)
                      +..+|++++|+|||++ ||.++. ||++.||++.+++...                    +..|. ..|..++|||| ++
T Consensus        20 ~~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~   77 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RV   77 (582)
T ss_dssp             HHSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EE
T ss_pred             hccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eE
Confidence            3567999999999997 666555 9999999997665443                    33444 68999999999 77


Q ss_pred             EEEEeC---CCeEEEEEccC--CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          435 FGVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       435 las~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      +++++.   +....||.+..  .....   .+..+ ..+...+|+||++.+++++++.++.+ +||+.+++.......+.
T Consensus        78 l~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~  152 (582)
T 3o4h_A           78 ILVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAV-KPMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG  152 (582)
T ss_dssp             EEEEECSTTSCCEEEEEEETTSTTCCE---ECTTS-CSBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS
T ss_pred             EEEeccCCCCcceEEEEEeccCCCccc---cccCC-CCceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC
Confidence            777765   45566765543  22121   22222 23456789999987566666666554 99999887665554333


Q ss_pred             cCEEEEeeeecCCceEEEEEecC----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          510 APVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                         .+++|+|  ||++|++++.+    +.|++||+.+++.. .+..+...+..++|+|||+                   
T Consensus       153 ---~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~-------------------  207 (582)
T 3o4h_A          153 ---FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMK-------------------  207 (582)
T ss_dssp             ---CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSC-------------------
T ss_pred             ---ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCC-------------------
Confidence               5666654  56899988777    78999999876544 4555666667777777766                   


Q ss_pred             CCEEEEEecCC--cEEEEECCCCceEEEEccCCCCCCcCeEE--------ECCCCCEEEEEECCCcEEEEEc
Q 001258          586 KNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       586 ~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                        +|+++..++  .|++||+.+++.. .+..+  ...+..++        |+|||.++++++.++.+++|++
T Consensus       208 --~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          208 --VTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             --EEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             --EEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence              577777788  8999999998877 55433  33566677        9999999999999999999997

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=1.1e-17  Score=206.70  Aligned_cols=233  Identities=13%  Similarity=0.102  Sum_probs=157.8

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCc-----ceEEEEEcCCCC
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS  433 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~  433 (1113)
                      ....+++|+|||++ ++++  ||+|++||+.+++...                   ++.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence            34568999999984 7775  9999999999998654                   2334432     334589999999


Q ss_pred             eEEEEeCC---------CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-
Q 001258          434 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-  503 (1113)
Q Consensus       434 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-  503 (1113)
                      +|+.++.+         +.+.+||+.+++..    .+..|.+.+..++|||||+.  ||.+ .|+.|++||+.++...+ 
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence            99999876         56679999998754    36678889999999999994  6666 47899999998887544 


Q ss_pred             EeeccCcCE-----------------EEEeeeecCCceEEEEEecCCc-EEEEEcCCCCCeeeeeCCCCceEEEEEccCC
Q 001258          504 IFEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  565 (1113)
Q Consensus       504 ~~~~h~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~  565 (1113)
                      +..++...+                 .++.|+  +||+.|+.++.|.. +.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wS--pDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEEC--CCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence            223333333                 235654  56788888876554 8888764321110   122334455555554


Q ss_pred             CeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCC---Cc--eEEEEccC----CCCCCcCeEEECCCCCEEEEE
Q 001258          566 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       566 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~  636 (1113)
                      .                     .    .....|++||+.+   ++  ....+...    ++...+..++|+|||+.++..
T Consensus       223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence            3                     1    1123689999998   73  22333321    123457899999999977665


Q ss_pred             EC----CCcEEEEEcCCC
Q 001258          637 TN----DNGIKILATSDG  650 (1113)
Q Consensus       637 ~~----dg~i~iwd~~~~  650 (1113)
                      ..    +..|++||+.++
T Consensus       278 ~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             EESSTTEEEEEEEEEETT
T ss_pred             eCCCCCEEEEEEEECCCC
Confidence            43    236899998877

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.80  E-value=2.2e-18  Score=207.39  Aligned_cols=270  Identities=10%  Similarity=0.053  Sum_probs=187.0

Q ss_pred             cCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEeeccC-cCEEEEeeeecCCceEEEEEec---CCcEEEEE
Q 001258          465 VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAWL  539 (1113)
Q Consensus       465 ~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd  539 (1113)
                      ..+|++++|+|||+  .|++++. |++++||++.+++. ..+..|. ..+..++|++  | .++++++.   +....+|.
T Consensus        21 ~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~sp--d-~~l~~~~~~~g~~~~~l~~   94 (582)
T 3o4h_A           21 AVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGV--G-RVILVRDVSKGAEQHALFK   94 (582)
T ss_dssp             HSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTC--S-EEEEEEECSTTSCCEEEEE
T ss_pred             ccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCC--C-eEEEEeccCCCCcceEEEE
Confidence            55899999999999  6777766 99999999866654 4555555 6888999874  4 67777765   55567766


Q ss_pred             cCC--CCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258          540 YDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1113)
Q Consensus       540 ~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1113)
                      +..  ......+.... .+...+|+|+|+.                    .+++.+.++.+.+||+.+++.......+. 
T Consensus        95 ~~~~~~g~~~~l~~~~-~~~~~~~s~dg~~--------------------~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           95 VNTSRPGEEQRLEAVK-PMRILSGVDTGEA--------------------VVFTGATEDRVALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EETTSTTCCEECTTSC-SBEEEEEEECSSC--------------------EEEEEECSSCEEEEEEETTEEEEEEEESS-
T ss_pred             EeccCCCccccccCCC-CceeeeeCCCCCe--------------------EEEEecCCCCceEEEccCCcEEEeecCCC-
Confidence            654  33222222221 2334456666542                    23344444555699999887666554331 


Q ss_pred             CCCcCeEEECCCCCEEEEEECC----CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccc
Q 001258          618 LPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  693 (1113)
Q Consensus       618 ~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1113)
                          .+++|+|||++|++++.+    +.|++||+.++. .. .+.                                   
T Consensus       153 ----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~-----------------------------------  191 (582)
T 3o4h_A          153 ----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD-----------------------------------  191 (582)
T ss_dssp             ----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC-----------------------------------
T ss_pred             ----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee-----------------------------------
Confidence                789999999999988776    567777765551 10 000                                   


Q ss_pred             ccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCC
Q 001258          694 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  773 (1113)
Q Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg  773 (1113)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (582)
T 3o4h_A          192 --------------------------------------------------------------------------------  191 (582)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CC--eEEEEECCCCc
Q 001258          774 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTFK  850 (1113)
Q Consensus       774 ~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~  850 (1113)
                                                                .+...+..++|||||++|+++. ++  .|++||+.+++
T Consensus       192 ------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          192 ------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             ------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             ------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence                                                      0333455677777777777555 56  78888888877


Q ss_pred             eeeeecCCCCCeeEEE--------EecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC
Q 001258          851 TMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA  922 (1113)
Q Consensus       851 ~~~~~~~~~~~i~~l~--------~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~  922 (1113)
                      .. .+..+...+..++        |+| ||.++++++.||.+++|++  ++...   .+.+.|.+++|+ |++++++++.
T Consensus       230 ~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s~  301 (582)
T 3o4h_A          230 VE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHTS  301 (582)
T ss_dssp             EE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEEE
T ss_pred             EE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEcC
Confidence            76 6666776677677        999 7799999999999999999  66554   344678999999 9999999888


Q ss_pred             CCc---EEEEeCCC
Q 001258          923 DSQ---LCVWSSDG  933 (1113)
Q Consensus       923 D~~---v~iwd~~~  933 (1113)
                      +.+   +.+||..+
T Consensus       302 ~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          302 LSTPPRIVSLPSGE  315 (582)
T ss_dssp             TTEEEEEEEETTCC
T ss_pred             CCCCCeEEEEcCCC
Confidence            754   66666654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.80  E-value=5e-18  Score=189.98  Aligned_cols=237  Identities=13%  Similarity=0.085  Sum_probs=178.2

Q ss_pred             EEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEE-EEEecCCcEEEEEcccceeeeeec
Q 001258          823 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~l-a~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .++++++++++++++ +++|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|.+||+.+++.+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            356778888888887 8999999999998888776443 2578999999 77655 555678999999999998877765


Q ss_pred             cc------ccCeEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258          900 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  961 (1113)
Q Consensus       900 ~h------~~~V~~l~~s~d~~~L~s~s~D------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  961 (1113)
                      .+      ...+.+++|+|||++|++++.+            +.|.+||+.+++....  .......    ..+.+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~--~~~~~~~----~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP--VRTFPMP----RQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC--SEEEECC----SSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccce--eeeccCC----CcccceeEC
Confidence            33      2347899999999999998865            8999999988543221  1111111    257889999


Q ss_pred             cCCcEEEEEcCCeEEEEeCCccceeeccccCC------------------------------------------------
Q 001258          962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------  993 (1113)
Q Consensus       962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~------------------------------------------------  993 (1113)
                      |||+ ++++ ++.|.+||+.+++.+..+....                                                
T Consensus       157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            9999 5554 3449999999988776554221                                                


Q ss_pred             ------------------CCCCeeEEEECC-CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258          994 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus       994 ------------------h~~~v~~l~~s~-dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
                                        +...+..++|+| ||++++++  ++.|.+||+.+++.+..+..      +  ..+.  .++|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~--~~~~--~~~~  302 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------D--HTYY--CVAF  302 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------S--SCCC--EEEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------C--CCcc--ceEE
Confidence                              011456778889 99999988  88999999999988876641      1  1233  5889


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258         1055 HPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus      1055 ~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
                      +| ||++|++++.++.|.+||+.+++.
T Consensus       303 s~-dg~~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          303 DK-KGDKLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             CS-SSSCEEEESBSSEEEEEETTTTEE
T ss_pred             CC-CCCEEEEecCCCeEEEEeccccce
Confidence            98 677777788899999999999883

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.80  E-value=3.6e-17  Score=202.26  Aligned_cols=364  Identities=11%  Similarity=0.026  Sum_probs=221.9

Q ss_pred             CeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe---eeecCCceEEEEEecC---------Cc
Q 001258          467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC---PHHKENIQFIFSTALD---------GK  534 (1113)
Q Consensus       467 ~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~---~~~~~~~~~l~s~~~d---------g~  534 (1113)
                      ...+++|+|||+  +++++  |++|++||+.++++...+.+|......++   +..++||++|+.++.+         +.
T Consensus        18 ~~~~~~w~~dg~--~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~   93 (740)
T 4a5s_A           18 KLYSLRWISDHE--YLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS   93 (740)
T ss_dssp             CCCCEEECSSSE--EEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cccccEECCCCc--EEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence            467899999998  67776  89999999999998888888765432221   1235677899888876         56


Q ss_pred             EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258          535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                      +.+||+.+++.. .+..+...+...+|||||+                     .|+.+ .++.|++|++.+++... +..
T Consensus        94 ~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~---------------------~la~~-~~~~i~~~~~~~~~~~~-lt~  149 (740)
T 4a5s_A           94 YDIYDLNKRQLI-TEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYR-ITW  149 (740)
T ss_dssp             EEEEETTTTEEC-CSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEE-CCS
T ss_pred             EEEEECCCCcEE-EcccCCCcceeeEECCCCC---------------------EEEEE-ECCeEEEEECCCCceEE-EcC
Confidence            779999886533 3444445566677777766                     56655 57899999998877543 222


Q ss_pred             CCCC-----------------CCcCeEEECCCCCEEEEEECCCc-EEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          615 DGGL-----------------PASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       615 ~~~~-----------------~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      .++.                 .....+.|||||+.|+.++.|.+ +.+|++......                       
T Consensus       150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~-----------------------  206 (740)
T 4a5s_A          150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDE-----------------------  206 (740)
T ss_dssp             CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCST-----------------------
T ss_pred             CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCC-----------------------
Confidence            2211                 11134667777776666654332 444443111000                       


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (740)
T 4a5s_A          207 --------------------------------------------------------------------------------  206 (740)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEE
Q 001258          757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  836 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~  836 (1113)
                                                                     .           .+...+..+.+.+.|...   
T Consensus       207 -----------------------------------------------~-----------~~~~~~~~~~yp~~G~~~---  225 (740)
T 4a5s_A          207 -----------------------------------------------S-----------LQYPKTVRVPYPKAGAVN---  225 (740)
T ss_dssp             -----------------------------------------------T-----------CSSCEEEEEECCBTTSCC---
T ss_pred             -----------------------------------------------C-----------CCCCcceeecCCCCcCcC---
Confidence                                                           0           011112223333332210   


Q ss_pred             eCCeEEEEECCC---Cc--eeeeec------CCCCCeeEEEEecCCCcEEEEEec----CCcEEEEEcccce----ee--
Q 001258          837 SGGKISLFNMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VK--  895 (1113)
Q Consensus       837 sdg~i~vwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~d~~~la~g~~----dg~v~iwd~~~~~----~~--  895 (1113)
                      ...+|++||+.+   ++  ....+.      ++...+..++|+| ||++++....    +..|++||+.+++    +.  
T Consensus       226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~  304 (740)
T 4a5s_A          226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVA  304 (740)
T ss_dssp             CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGG
T ss_pred             CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEE
Confidence            013678888887   63  222333      3667799999999 8887666543    3379999999887    32  


Q ss_pred             eee--cccccCeE-----EEEEcCCCCEEE-EEeC-C--CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          896 SKL--KGHSKRIT-----GLAFSHALNVLV-SSGA-D--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       896 ~~l--~~h~~~V~-----~l~~s~d~~~L~-s~s~-D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      ..+  .+|...|.     ..+|+|||+.|+ ..+. +  ..|++||+.+++.     ..+..+..    .+..+ +.+|+
T Consensus       305 ~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~~----~v~~~-~~~d~  374 (740)
T 4a5s_A          305 RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGTW----EVIGI-EALTS  374 (740)
T ss_dssp             GCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSSS----CEEEE-EEECS
T ss_pred             EEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCCE----EEEEE-EEEeC
Confidence            222  45665554     789999999887 6654 3  4688888887543     22222321    23333 23557


Q ss_pred             cEEEE-EcC-------CeEEEEeCCccceeecccc--CCCCCCeeEEEECCCCCEEEEEeCC---CcEEEEecCCCceee
Q 001258          965 IHFLV-VHE-------TQLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRC 1031 (1113)
Q Consensus       965 ~~l~~-~~d-------~~v~v~d~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~D---g~v~vwd~~~~~~~~ 1031 (1113)
                      +.++. +..       ..|...++.++.....+..  .+....+..+.||||+++++.....   ..+.+++..+++...
T Consensus       375 ~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~  454 (740)
T 4a5s_A          375 DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLR  454 (740)
T ss_dssp             SEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEE
T ss_pred             CEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEE
Confidence            77766 433       2566666665543322221  1234578899999999987755433   468888988877655


Q ss_pred             ec
Q 001258         1032 RI 1033 (1113)
Q Consensus      1032 ~~ 1033 (1113)
                      .+
T Consensus       455 ~l  456 (740)
T 4a5s_A          455 VL  456 (740)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=1.9e-16  Score=177.93  Aligned_cols=230  Identities=12%  Similarity=0.115  Sum_probs=145.0

Q ss_pred             ceEEEEEeCCCceEEEee-cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC
Q 001258          753 KISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  831 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~  831 (1113)
                      ....+++  +++.++++. .++.+.+|++............      +.....+...     ...+...+.+++|+|+|+
T Consensus       101 ~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------~~~~g~~~~~-----~~~~~~~~~~~~~spdg~  167 (361)
T 3scy_A          101 DPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDV------IEFKGSGPDK-----ERQTMPHLHCVRITPDGK  167 (361)
T ss_dssp             CEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEE------EECCCCCSCT-----TTCSSCCEEEEEECTTSS
T ss_pred             CcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCccccee------EEccCCCCCc-----cccCCCcceEEEECCCCC
Confidence            3455666  777676665 4689999998632110000000      0000000000     001334568899999999


Q ss_pred             EEEEEe--CCeEEEEECCCCce------e-------eeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccccee-
Q 001258          832 YVMSAS--GGKISLFNMMTFKT------M-------ATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV-  894 (1113)
Q Consensus       832 ~l~~~s--dg~i~vwd~~~~~~------~-------~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~-  894 (1113)
                      +++++.  ++.|++|++.....      +       .........+..++|+| +++++++++ .++.|.+|++.+++. 
T Consensus       168 ~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~  246 (361)
T 3scy_A          168 YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLD  246 (361)
T ss_dssp             EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEE
T ss_pred             EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceE
Confidence            887766  68999999875431      1       11223445678999999 888777776 689999999987754 


Q ss_pred             -eeee---cccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeCC--CCccccccccccCCCCCCCCCCCceEEEccCCcE
Q 001258          895 -KSKL---KGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       895 -~~~l---~~h~~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~  966 (1113)
                       +..+   ..+...+.+++|+|||++|++++.+  +.|.+|+++  +++........  .+     ..+..++|+|||++
T Consensus       247 ~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~g-----~~~~~~~~spdg~~  319 (361)
T 3scy_A          247 EIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--TG-----IHPRNFIITPNGKY  319 (361)
T ss_dssp             EEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--CS-----SCCCEEEECTTSCE
T ss_pred             EeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--CC-----CCCceEEECCCCCE
Confidence             2222   3344567899999999998776654  899999996  33221111111  12     25689999999999


Q ss_pred             EEEE--cCCeEEEE--eCCccceeeccccCCCCCCeeEEEEC
Q 001258          967 FLVV--HETQLAIF--ETTKLECVKQWVPRESSAPITHATFS 1004 (1113)
Q Consensus       967 l~~~--~d~~v~v~--d~~~~~~~~~~~~~~h~~~v~~l~~s 1004 (1113)
                      |+++  .++.|.+|  |..+++...... ..+...+.|+.|.
T Consensus       320 l~~~~~~~~~v~v~~~d~~~g~~~~~~~-~~~~~~p~~v~~~  360 (361)
T 3scy_A          320 LLVACRDTNVIQIFERDQATGLLTDIKK-DIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTTCCEEECSC-CEECSSEEEEEEE
T ss_pred             EEEEECCCCCEEEEEEECCCCcEeecce-eeeCCCCeEEEEc
Confidence            8885  56889995  555776654421 1234578888885

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=9.2e-17  Score=180.54  Aligned_cols=275  Identities=11%  Similarity=0.100  Sum_probs=180.3

Q ss_pred             cCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC----CeEEEEEccccccCCCCceeeeec
Q 001258          721 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN----AIHLLWKWQRTERNSSGKATASVA  796 (1113)
Q Consensus       721 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d----g~i~vw~~~~~~~~~~~~~~~~~~  796 (1113)
                      +.++.|.+|.++.....  ...+..  . +......++|+|+|+.|++++.+    +.+.+|++...             
T Consensus        24 ~~~~~i~~~~~d~~~g~--~~~~~~--~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~-------------   85 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGE--SLPLSD--A-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKE-------------   85 (361)
T ss_dssp             SSCCEEEEEEEETTTCC--EEEEEE--E-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETT-------------
T ss_pred             CCCCCEEEEEEeCCCCC--EEEeec--c-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCC-------------
Confidence            34678999988643221  111111  1 44566779999999999988875    79999987531             


Q ss_pred             CeecCCCCcccccc-ccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeee------cC--------CC
Q 001258          797 PQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF------MP--------PP  859 (1113)
Q Consensus       797 ~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~------~~--------~~  859 (1113)
                             +|.+... ...  .+...+..+++  ++++|+++.  ++.|.+|++.....+..+      .+        +.
T Consensus        86 -------~g~~~~~~~~~--~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~  154 (361)
T 3scy_A           86 -------KGTLHLLNTQK--TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTM  154 (361)
T ss_dssp             -------TTEEEEEEEEE--CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSS
T ss_pred             -------CCcEEEeeEec--cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCC
Confidence                   1211100 000  03345666777  888888876  689999999754333221      11        12


Q ss_pred             CCeeEEEEecCCCcEEEEEe-cCCcEEEEEcccce-------ee------eeecccccCeEEEEEcCCCCEEEEEe-CCC
Q 001258          860 PAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE-------VK------SKLKGHSKRITGLAFSHALNVLVSSG-ADS  924 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~-------~~------~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~  924 (1113)
                      ..+.+++|+| ++++|++++ .++.|++|++....       +.      .....+...+.+++|+|||++|++++ .++
T Consensus       155 ~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~  233 (361)
T 3scy_A          155 PHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGG  233 (361)
T ss_dssp             CCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTC
T ss_pred             CcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCC
Confidence            3458899999 887665544 58899999987533       11      11223455688999999999887777 689


Q ss_pred             cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-c--CCeEEEEeCC--ccc--eeeccccCCCCCC
Q 001258          925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSAP  997 (1113)
Q Consensus       925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~--d~~v~v~d~~--~~~--~~~~~~~~~h~~~  997 (1113)
                      .|.+|++.+++............+.   .....++|+|||++|+++ .  ++.|.+|++.  +++  .+..+.  . ...
T Consensus       234 ~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~~  307 (361)
T 3scy_A          234 TVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GIH  307 (361)
T ss_dssp             EEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SSC
T ss_pred             eEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CCC
Confidence            9999999865432222122222211   235789999999998774 3  4789999985  454  333333  2 457


Q ss_pred             eeEEEECCCCCEEEEEe-CCCcEEEEe--cCCCceee
Q 001258          998 ITHATFSCDSQLVYACF-LDATVCVFS--AANLKLRC 1031 (1113)
Q Consensus       998 v~~l~~s~dg~~l~s~~-~Dg~v~vwd--~~~~~~~~ 1031 (1113)
                      +.+++|+|||++|++++ .++.|.+|+  ..++++..
T Consensus       308 ~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          308 PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            88999999999998888 678999965  45676653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.78  E-value=2.2e-17  Score=185.54  Aligned_cols=250  Identities=11%  Similarity=0.102  Sum_probs=169.2

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECC-CCceeeeecC-CCCCeeEEEEecCCCc--EEEEEe-------------cC
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNN--IIAIGM-------------DD  881 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~la~g~-------------~d  881 (1113)
                      ..+..++++|+|++|++++.+.|.+|++. +++....... ..+...+++|+| +++  +++++.             .+
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence            46788999999999998884499999997 7765433221 112366789999 787  355553             68


Q ss_pred             CcEEEEEcc-cceeeeeec----ccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCccccccccccCCCCCCCCCC
Q 001258          882 SSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQS  954 (1113)
Q Consensus       882 g~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~  954 (1113)
                      |.+.+|++. +++....+.    .+...+.+++|+|||++|++++. ++.|++|+++ +++........... +.   ..
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~  194 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH  194 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence            999999997 466544443    25567999999999998887764 6789999998 55432111111111 01   24


Q ss_pred             CceEEEccCCcEEEEE--cCCeEEEEeCC--cccee------ecccc--CCCCC------CeeEEE-ECCCCCEEEEEeC
Q 001258          955 DTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV------KQWVP--RESSA------PITHAT-FSCDSQLVYACFL 1015 (1113)
Q Consensus       955 i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~~------~~~~~--~~h~~------~v~~l~-~s~dg~~l~s~~~ 1015 (1113)
                      +..++|+|||++++++  .++.+.+|+++  +++..      ..+..  .+|..      .+..++ |+|||++|++++.
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            6889999999998874  36789999765  56542      12211  12222      588999 9999999887764


Q ss_pred             CC------cEEEEecC-CCceeeecCCCcccCCCcccCccceEEEEeCC--CCCEEEEEeCC-CcEEEEeccCC
Q 001258         1016 DA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1079 (1113)
Q Consensus      1016 Dg------~v~vwd~~-~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1079 (1113)
                      +.      .|.+|+++ ++++.....   ..+ .+...+..  ++|+|.  ||++|++++.+ ++|.+|++...
T Consensus       275 ~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~~~~~~~--~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          275 ANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TPTSGGHS--NAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CSSCCTTC--CCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCeEEEEEECCCCCEEEeee---eee-cCCCCccc--ceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            32      89999996 566543110   000 12223333  678885  68899888765 89999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.78  E-value=3.4e-17  Score=183.18  Aligned_cols=260  Identities=12%  Similarity=0.076  Sum_probs=181.5

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE-EeC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-AYS  440 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~~~  440 (1113)
                      +.++++++++ ++++++.+++|.+||..+++.+....                  .+....+..++|+|||+++++ +..
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCV------------------MPDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEE------------------CSSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEe------------------cCCCCCCceeEECCCCCEEEEEeCC
Confidence            3457788877 68999999999999999987765311                  112225778999999997654 456


Q ss_pred             CCeEEEEEccCCceeeeeeeee-cc-----cCCeeEEEEcCCCCeeEEEEecCC------------CcEEEEeCCCCce-
Q 001258          441 RHIVQIYSYHGGDEVRQHLEID-AH-----VGGVNDIAFSHPNKQLCVITCGDD------------KTIKVWDATNGAK-  501 (1113)
Q Consensus       441 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~V~~v~~s~~~~~~~l~s~s~d------------~~i~iwd~~~~~~-  501 (1113)
                      ++.|.+||+.+++.+..   +. .+     ...+.+++|+|||+  ++++++.+            +.|.+||+.+++. 
T Consensus        64 ~~~i~~~d~~t~~~~~~---~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTFH---ANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEEEEE---EESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcEEEE---EEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            89999999999876542   32 22     23488999999999  56666644            8999999998543 


Q ss_pred             --eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------------------C---c
Q 001258          502 --QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------------------R---W  555 (1113)
Q Consensus       502 --~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~  555 (1113)
                        +..+. +...+.+++|++  +|. ++.++.  .|.+||+.+++....+....                     .   .
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECT--TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeeecc-CCCcccceeECC--CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence              33444 334577777654  556 555543  49999998877665554332                     0   2


Q ss_pred             eEEEEEccCCCeE---------Ee--------------ccccCceeEEEecC-CCCEEEEEecCCcEEEEECCCCceEEE
Q 001258          556 CTTMAYSADGTRT---------YQ--------------GFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMDSVQLLTS  611 (1113)
Q Consensus       556 v~~~~~s~~~~~~---------~~--------------~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  611 (1113)
                      ...+++++++...         +.              ......+..++++| ++++++++  ++.|.+||+.+++.+..
T Consensus       213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~  290 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKA  290 (349)
T ss_dssp             EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEE
T ss_pred             eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEE
Confidence            3345555543210         00              00122456678899 99998888  88999999999998887


Q ss_pred             EccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          612 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       612 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +....   .+.+++|+|++++|++++.++.|.+||..++ +.+..+
T Consensus       291 ~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~  332 (349)
T 1jmx_B          291 ANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNI  332 (349)
T ss_dssp             EECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEE
T ss_pred             EcCCC---CccceEECCCCCEEEEecCCCeEEEEecccc-ceeeee
Confidence            76432   3679999999998888888999999999887 444444

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=3.9e-16  Score=177.53  Aligned_cols=252  Identities=13%  Similarity=0.002  Sum_probs=161.6

Q ss_pred             eEeccCCCCcEE-----EEEcCCCCeEEEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258          352 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  424 (1113)
Q Consensus       352 ~~~~~h~~~V~~-----~~~spdg~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  424 (1113)
                      .++-.|...+..     .+|||||++|++++..+|  .|.+||+.+++...                   +..+|...+.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~   84 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF   84 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence            333336555555     889999997554444366  48888998887654                   3455666666


Q ss_pred             EEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEE--EcCCCCeeEEEE------------------
Q 001258          425 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------  484 (1113)
Q Consensus       425 ~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~~~~~~~l~s------------------  484 (1113)
                      .++|||||++|+.++.++.|.+||+.+++...   .+..+...+....  ++++++  +++.                  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence            78899999999999999999999999987554   2344555454444  489998  4542                  


Q ss_pred             ----ecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCC-
Q 001258          485 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG-  553 (1113)
Q Consensus       485 ----~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~-  553 (1113)
                          .+.+..|.+||+.+++. ..+..+...+..++|+|. +|..|+.+..+      ..|.++|.............. 
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~  237 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGES-TVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG  237 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCE-EEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred             hhhccCCcceEEEEECCCCce-EEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence                23457899999998865 445556777888887651 45777766653      367777776543332222221 


Q ss_pred             CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-c-C---CcEEEEECCCCceEEEEccCC--CC-CCcCeEE
Q 001258          554 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPRIR  625 (1113)
Q Consensus       554 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~~~  625 (1113)
                      ..+...+|+|||+                     .|+..+ . +   ..|++||+.+++.........  +. .....++
T Consensus       238 ~~~~~~~~spdg~---------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~  296 (388)
T 3pe7_A          238 ESCTHEFWVPDGS---------------------ALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSL  296 (388)
T ss_dssp             EEEEEEEECTTSS---------------------CEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSE
T ss_pred             cccccceECCCCC---------------------EEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCe
Confidence            2355566666665                     343332 2 2   239999999887543322221  00 0123458


Q ss_pred             ECCCCCEEEEE---------ECCCcEEEEEcCCC
Q 001258          626 FNKDGCLLAVS---------TNDNGIKILATSDG  650 (1113)
Q Consensus       626 ~s~~~~~l~~~---------~~dg~i~iwd~~~~  650 (1113)
                      |+|||+.|+..         ..+..|++||+.++
T Consensus       297 ~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          297 MVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             EEEEECCC------------CCCCEEEEEETTTT
T ss_pred             EccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            99999988764         34567999998776

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=4e-16  Score=177.35  Aligned_cols=207  Identities=10%  Similarity=0.023  Sum_probs=141.2

Q ss_pred             ccCCCcceEE-----EEEcCCCCeEEEEeC-CC--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC
Q 001258          416 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  487 (1113)
Q Consensus       416 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~  487 (1113)
                      +..|......     .+|||||++|+.++. ++  .|.+||+.+++...   ...+|...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5556555555     899999999999887 66  48888999887554   3445666666889999999  6888888


Q ss_pred             CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEE----------------------ecCCcEEEEEcCCCCC
Q 001258          488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS  545 (1113)
Q Consensus       488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----------------------~~dg~i~iwd~~~~~~  545 (1113)
                      ++.|++||+.+++....+..+...+....|..++++.+++..                      ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            899999999999887777766666655565556777777643                      2346789999887643


Q ss_pred             eeeeeCCCCceEEEEEcc-CCCeEEeccccCceeEEEecCCCCEEEEEec------CCcEEEEECCCCceEEEEccCCCC
Q 001258          546 RVDYEAPGRWCTTMAYSA-DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL  618 (1113)
Q Consensus       546 ~~~~~~~~~~v~~~~~s~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~  618 (1113)
                      . .+..+...+..+.|+| ||+                     .|+.+..      ...|.++|...+... .+..+...
T Consensus       181 ~-~l~~~~~~~~~~~~sp~dg~---------------------~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~  237 (388)
T 3pe7_A          181 T-VILQENQWLGHPIYRPYDDS---------------------TVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEG  237 (388)
T ss_dssp             E-EEEEESSCEEEEEEETTEEE---------------------EEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTT
T ss_pred             E-EeecCCccccccEECCCCCC---------------------EEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCC
Confidence            3 3333334455666666 555                     4555443      347888888665443 33322211


Q ss_pred             CCcCeEEECCCCCEEEEEECC-C----cEEEEEcCCC
Q 001258          619 PASPRIRFNKDGCLLAVSTND-N----GIKILATSDG  650 (1113)
Q Consensus       619 ~~v~~~~~s~~~~~l~~~~~d-g----~i~iwd~~~~  650 (1113)
                      ..+...+|+|||+.|+..+.+ +    .|++||+.++
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            246678999999977654432 2    2888887666

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=3.1e-15  Score=166.81  Aligned_cols=228  Identities=9%  Similarity=0.022  Sum_probs=139.0

Q ss_pred             CCCeEEEEEe-----cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe----
Q 001258          369 VQQTLLLVGT-----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----  439 (1113)
Q Consensus       369 dg~~ll~~gs-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----  439 (1113)
                      ++++++++..     .|+.|.+||..+++.+..                   +..+..+  .++|||||++|.+++    
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~   72 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE   72 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence            5565444432     378999999999887653                   2233334  899999999999986    


Q ss_pred             ------CCCeEEEEEccCCceeeeeeeeec---ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCceeeE-eec
Q 001258          440 ------SRHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG  507 (1113)
Q Consensus       440 ------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~-~~~  507 (1113)
                            .++.|.+||..+++.+..+.....   +......++|+|||++  ++++.  .+++|.+||+.+++.+.. +..
T Consensus        73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~  150 (361)
T 2oiz_A           73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA  150 (361)
T ss_dssp             TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence                  367899999998887664322211   2346788999999995  55444  368999999999988877 542


Q ss_pred             cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                       .+ ...+.+.+... ..+++.+.||.+.+|++........... .    ...|.+...          ...+.+.+++.
T Consensus       151 -~~-~~~v~~~p~~~-~~~~~~~~dg~~~~v~~~~~g~~~~~~~-~----~~~~~~~~~----------~~~~~~~~~g~  212 (361)
T 2oiz_A          151 -AG-CWSVIPQPNRP-RSFMTICGDGGLLTINLGEDGKVASQSR-S----KQMFSVKDD----------PIFIAPALDKD  212 (361)
T ss_dssp             -TT-EEEEEECTTSS-SEEEEEETTSSEEEEEECTTSSEEEEEE-C----CCCSCTTTS----------CBCSCCEECSS
T ss_pred             -CC-cceeEEcCCCC-eeEEEECCCCcEEEEEECCCCcEeeecc-c----cceEcCCCC----------ceEEEecccCC
Confidence             22 12233334332 5778889999999999865333221000 0    001111111          01122244455


Q ss_pred             EEEEEecCCcEEEEECCCCceE--EEEccCC------C--CCCcCeEEECCCCCEEEEEE
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLL--TSIDADG------G--LPASPRIRFNKDGCLLAVST  637 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~------~--~~~v~~~~~s~~~~~l~~~~  637 (1113)
                      .++..+.++.|.++|+..+...  ..+....      .  ......++|+|+++.++++.
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~  272 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFM  272 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEE
Confidence            6777778899999998755422  2221110      0  01122377888877666654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.70  E-value=8.7e-15  Score=163.24  Aligned_cols=304  Identities=10%  Similarity=0.097  Sum_probs=194.5

Q ss_pred             CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe----------cCCcEEEEEcCCCCCeeeeeCCCCce
Q 001258          487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWC  556 (1113)
Q Consensus       487 ~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v  556 (1113)
                      .|+.|.+||..+++.+..+..+..+  .++|+  ++|++++++.          .++.|.+||..+.+....+.......
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~s--pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~  104 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVS--NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRV  104 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEEC--TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEEC--CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccc
Confidence            4789999999999998888776555  67765  5667888776          36789999998766665544321100


Q ss_pred             EEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec--CCcEEEEECCCCceEEE-EccCCCCCCcCeEEECCCC-CE
Q 001258          557 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD--DFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDG-CL  632 (1113)
Q Consensus       557 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~-~~  632 (1113)
                                     ........++++|++++|+++..  ++.|.+||+.+++.+.. +...+    ...+.+.|++ ..
T Consensus       105 ---------------~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~  165 (361)
T 2oiz_A          105 ---------------QGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRS  165 (361)
T ss_dssp             ---------------CBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSE
T ss_pred             ---------------ccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCee
Confidence                           00012233555666667877763  68999999999988877 54321    2235677765 67


Q ss_pred             EEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccC
Q 001258          633 LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA  712 (1113)
Q Consensus       633 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (1113)
                      +++.+.||.+.+|+.....+......  .                                                   
T Consensus       166 ~~~~~~dg~~~~v~~~~~g~~~~~~~--~---------------------------------------------------  192 (361)
T 2oiz_A          166 FMTICGDGGLLTINLGEDGKVASQSR--S---------------------------------------------------  192 (361)
T ss_dssp             EEEEETTSSEEEEEECTTSSEEEEEE--C---------------------------------------------------
T ss_pred             EEEECCCCcEEEEEECCCCcEeeecc--c---------------------------------------------------
Confidence            88889999999998765212221100  0                                                   


Q ss_pred             CCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCcee
Q 001258          713 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT  792 (1113)
Q Consensus       713 ~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  792 (1113)
                                   ..+|+...                  .. ..+.+++++..++..+.++.+.++|+......     .
T Consensus       193 -------------~~~~~~~~------------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-----~  235 (361)
T 2oiz_A          193 -------------KQMFSVKD------------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-----V  235 (361)
T ss_dssp             -------------CCCSCTTT------------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-----E
T ss_pred             -------------cceEcCCC------------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce-----e
Confidence                         00011100                  00 01112344555555556677777776422110     0


Q ss_pred             eeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe------------CCeEEEEECCCCceeeeecCCCC
Q 001258          793 ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS------------GGKISLFNMMTFKTMATFMPPPP  860 (1113)
Q Consensus       793 ~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~  860 (1113)
                          +..|+...........    .......++++|+++.++++.            .++|.+||+.+++.+.++..+. 
T Consensus       236 ----~~~~~~~~~~~~~~~~----~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-  306 (361)
T 2oiz_A          236 ----DGPWSLLNDEDKAKNW----VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-  306 (361)
T ss_dssp             ----EEEEESCCHHHHHTTC----EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-
T ss_pred             ----cccccccCcccccccc----ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-
Confidence                0011111110000000    011223478999988877653            2479999999999999998776 


Q ss_pred             CeeEEEEecCCCcEEEEEecCCcEEEEEcccc--eeeeeecccccCeEEEEEcCCCC
Q 001258          861 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAFSHALN  915 (1113)
Q Consensus       861 ~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d~~  915 (1113)
                       +.+++|+| |+++|+++.. +.|.+||..++  +.+..+..+......++++|||+
T Consensus       307 -p~~ia~sp-dg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          307 -ALSMTIDQ-QRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             -CCEEEEET-TTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             -eeEEEECC-CCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence             99999999 8888888876 99999999999  99999877888889999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.69  E-value=2.3e-15  Score=169.01  Aligned_cols=258  Identities=9%  Similarity=0.021  Sum_probs=163.8

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecC-CcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe-
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVG-SRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL-  434 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~-  434 (1113)
                      +...+..++|+|||++ |++++.+ .|.+|++. +++......                 ...+ +.+.+++|+|||++ 
T Consensus        38 ~~~~~~~~a~spdg~~-l~~~~~~-~v~~~~~~~~g~~~~~~~-----------------~~~~-g~~~~~~~spdg~~l   97 (365)
T 1jof_A           38 QDEPISWMTFDHERKN-IYGAAMK-KWSSFAVKSPTEIVHEAS-----------------HPIG-GHPRANDADTNTRAI   97 (365)
T ss_dssp             TTCCCSEEEECTTSSE-EEEEEBT-EEEEEEEEETTEEEEEEE-----------------EECC-SSGGGGCTTSCCEEE
T ss_pred             CCCCCcEEEECCCCCE-EEEEccc-eEEEEEECCCCCEEEeeE-----------------eecC-CCCccEEECCCCCEE
Confidence            4457889999999996 6677766 99999997 776543110                 0111 12556899999994 


Q ss_pred             -EEEEe-------------CCCeEEEEEcc-CCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCC
Q 001258          435 -FGVAY-------------SRHIVQIYSYH-GGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDAT  497 (1113)
Q Consensus       435 -las~~-------------~d~~i~iwd~~-~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~  497 (1113)
                       +++++             .++.+.+|++. +++.......+. .+...+.+++|+|||+.  ++++ ..++.|++||+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~--l~~~~~~~~~v~~~~~~  175 (365)
T 1jof_A           98 FLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETY--LYSADLTANKLWTHRKL  175 (365)
T ss_dssp             EEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSE--EEEEETTTTEEEEEEEC
T ss_pred             EEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCE--EEEEcCCCCEEEEEEEC
Confidence             55553             68999999997 455433222221 25568999999999994  5544 346899999998


Q ss_pred             -CCcee--eEee--ccCcCEEEEeeeecCCceEEEEEec-CCcEEEEEcCC--CCCeeeeeCCCCceEEEEEccCCCeEE
Q 001258          498 -NGAKQ--YIFE--GHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       498 -~~~~~--~~~~--~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                       +|+..  ..+.  .|...+..++|++  +|+++++++. ++.|.+|+++.  +......       ..+...+.+.   
T Consensus       176 ~~g~~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~-------~~~~~~~~~~---  243 (365)
T 1jof_A          176 ASGEVELVGSVDAPDPGDHPRWVAMHP--TGNYLYALMEAGNRICEYVIDPATHMPVYTH-------HSFPLIPPGI---  243 (365)
T ss_dssp             TTSCEEEEEEEECSSTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEE-------EEEESSCTTC---
T ss_pred             CCCCEEEeeeEecCCCCCCCCEeEECC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEcc-------ceEEcCCCCc---
Confidence             77653  2333  2456788888764  5577777664 78999998764  2221100       0011011100   


Q ss_pred             ecccc-----CceeEEE-ecCCCCEEEEEecC-C-----cEEEEECC-CCceEEE---EccCCCCCCcCeEEECC---CC
Q 001258          570 QGFRK-----RSLGVVQ-FDTTKNRFLAAGDD-F-----SIKFWDMD-SVQLLTS---IDADGGLPASPRIRFNK---DG  630 (1113)
Q Consensus       570 ~~~~~-----~~i~~~~-~~~~~~~l~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~~~~s~---~~  630 (1113)
                      .++..     .....++ |+|+|++|+++..+ +     .|.+|++. +++....   ....  ...+..++|+|   ||
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCT
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCC
Confidence            00000     0234455 66666677765532 2     89999996 5665432   2222  22467899999   89


Q ss_pred             CEEEEEECC-CcEEEEEcCCC
Q 001258          631 CLLAVSTND-NGIKILATSDG  650 (1113)
Q Consensus       631 ~~l~~~~~d-g~i~iwd~~~~  650 (1113)
                      ++|++++.+ +.|.+|++...
T Consensus       322 ~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TEEEEECSSSCEEEEEEEETT
T ss_pred             CEEEEEEcCCCeEEEEEEchh
Confidence            999998864 89999998765

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=1.5e-15  Score=173.27  Aligned_cols=162  Identities=9%  Similarity=0.005  Sum_probs=108.3

Q ss_pred             ceEEEEEcCCCCeEEEEeCC---CeEEEEEccCCceeeeeeeeecccCC-eeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          422 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      .+.+++|||||++|+.+...   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence            47788999999999887543   468889998886443    3333333 34489999999  68888888899999999


Q ss_pred             CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      +++.......+..      |.  ++|..|+..+.++...+|..                 ...++|+++           
T Consensus       111 ~~~~~~~~~~~~~------~~--~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~-----------  154 (396)
T 3c5m_A          111 TLEEQVIYTVDEE------WK--GYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS-----------  154 (396)
T ss_dssp             TCCEEEEEECCTT------EE--EEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred             CCCcEEEEecccc------cC--CCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence            8876655554443      22  23356666555555555531                 123455554           


Q ss_pred             eEEEecCCCCEEEEE-----ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258          578 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  638 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  638 (1113)
                                .++..     ..+..|++||+.+++.......   ...+..+.|+| +++.|+..+.
T Consensus       155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~  208 (396)
T 3c5m_A          155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHE  208 (396)
T ss_dssp             ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEEC
T ss_pred             ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEec
Confidence                      33332     3466899999998876655532   23577899999 7887776654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=1.7e-14  Score=155.86  Aligned_cols=242  Identities=11%  Similarity=0.117  Sum_probs=175.4

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec------CCCCCeeEEEEecCCCcEEEEEec-CCcEEEEE
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN  888 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~------~~~~~i~~l~~s~~d~~~la~g~~-dg~v~iwd  888 (1113)
                      +-..+.+++++++++++++.. ++.|.+||.. ++.+..+.      ++...+..+++++.+++++++... ++.|++||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            455688999999999888776 7999999987 55555553      233568899995327777776643 88999999


Q ss_pred             cccceeeeeec-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258          889 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       889 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l  967 (1113)
                       .+++.+..+. .+...+.+++++++|+++++...++.|.+||.... ...  .... ....   ..+..++++++|..+
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-~~~--~~~~-~~~~---~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLH--KFGC-SKHL---EFPNGVVVNDKQEIF  178 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC-EEE--EEEC-TTTC---SSEEEEEECSSSEEE
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCC-EEE--EeCC-CCcc---CCcEEEEECCCCCEE
Confidence             5677666664 34567899999999998888888899999997542 111  1110 0111   246899999999977


Q ss_pred             EEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC-cEEEEecCCCceeeecCCCcccCCCccc
Q 001258          968 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1113)
Q Consensus       968 ~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-~v~vwd~~~~~~~~~~~~~~~~~~gh~~ 1045 (1113)
                      ++. .++.|.+||.. ++.+..+...++...+..++++++|+++++...++ .|.+|+. +++.+..+.       .+..
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~-------~~~~  249 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALE-------SKVK  249 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEE-------ESSC
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEc-------ccCC
Confidence            774 68899999974 55555554334446789999999999888887776 9999995 466666554       2222


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1046 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1046 ~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ...+..+++.| +|+++++ +.|++|++|++..
T Consensus       250 ~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          250 HAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             CSCEEEEEEET-TTEEEEE-ETTTEEEEEECSC
T ss_pred             CCcceeEEECC-CCcEEEE-CCCCeEEEEEccc
Confidence            22344688888 6776666 6799999999765

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2.3e-14  Score=158.02  Aligned_cols=251  Identities=12%  Similarity=0.117  Sum_probs=184.6

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecC------------------------CcEEEEecCCcceeEeeeeeeeccCCCCccccc
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA  413 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~d------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (1113)
                      -+.|.+++|+|+|+ ++++.+.+                        ++|.+||..+++.+..                 
T Consensus        23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------   84 (329)
T 3fvz_A           23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-----------------   84 (329)
T ss_dssp             CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred             cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence            36789999999998 57777766                        4799999988876542                 


Q ss_pred             ccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCc-eeeeeeee---------ecccCCeeEEEEcC-CCCeeEE
Q 001258          414 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV  482 (1113)
Q Consensus       414 ~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-~~~~~~l  482 (1113)
                       .-.++-.....++++|+|+++++...++.|++||..+.. .+.   .+         .++......|+|+| ++.  ++
T Consensus        85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly  158 (329)
T 3fvz_A           85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF  158 (329)
T ss_dssp             -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred             -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence             122445578999999999998888889999999986542 232   23         34555789999999 676  67


Q ss_pred             EEec-CCCcEEEEeCCCCceeeEeecc----------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-
Q 001258          483 ITCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-  550 (1113)
Q Consensus       483 ~s~s-~d~~i~iwd~~~~~~~~~~~~h----------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-  550 (1113)
                      ++.+ .++.|++|| .+|+.+..+...          ......+++.++ .+.++++...++.|++||..+++....+. 
T Consensus       159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~  236 (329)
T 3fvz_A          159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKH  236 (329)
T ss_dssp             EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred             EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEec
Confidence            7775 689999999 678877777432          234788887643 25788888889999999998766665553 


Q ss_pred             -CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc-CCCCCCcCeEEECC
Q 001258          551 -APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNK  628 (1113)
Q Consensus       551 -~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~  628 (1113)
                       .....+..++++| +.              .+..+++.+++...+..|++|+..+++.+..+.. ..+...+..++++|
T Consensus       237 ~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~  301 (329)
T 3fvz_A          237 ASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE  301 (329)
T ss_dssp             TTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT
T ss_pred             cccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC
Confidence             2344566777776 32              1112333344445667999999999999888742 22344678999999


Q ss_pred             CCCEEEEEECCCcEEEEEcCC
Q 001258          629 DGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       629 ~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                      +|.++++...++.|++|++..
T Consensus       302 dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          302 DGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCc
Confidence            998888888899999998754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.66  E-value=5.2e-13  Score=156.15  Aligned_cols=232  Identities=18%  Similarity=0.137  Sum_probs=158.3

Q ss_pred             eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEcc-
Q 001258          372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-  450 (1113)
Q Consensus       372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~-  450 (1113)
                      +++++...+++|.++|..+++.+...                  -.  ...+..+.|||||+++.+++.|+.|.+||+. 
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i------------------~~--g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVL------------------DT--GYAVHISRLSASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEE------------------EC--SSCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEE------------------eC--CCCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence            46788888999999999999887641                  11  2256799999999999999999999999996 


Q ss_pred             -CCceeeeeeeeecccCCeeEEEEc----CCCCeeEEEEecCCCcEEEEeCCCCceeeEeec----------cCc-CEEE
Q 001258          451 -GGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----------HEA-PVYS  514 (1113)
Q Consensus       451 -~~~~~~~~~~l~~h~~~V~~v~~s----~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----------h~~-~v~~  514 (1113)
                       +++.+.   ++... .....++|+    |||++ ++++...+++|.|+|..+.+.+.++..          |.. .+..
T Consensus       228 ~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          228 KEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             SSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence             766554   34332 246799999    69995 455556679999999999998887652          212 5666


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      +..++.. ..++++...+|.|.++|..+........ ....                     ....+.|+|++++++++.
T Consensus       303 i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~---------------------~~~d~~~~pdgr~~~va~  360 (567)
T 1qks_A          303 ILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAER---------------------FLHDGGLDGSHRYFITAA  360 (567)
T ss_dssp             EEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCS---------------------SEEEEEECTTSCEEEEEE
T ss_pred             EEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccc---------------------cccCceECCCCCEEEEEe
Confidence            6655432 3567777778999999987643221110 1111                     223345566666666654


Q ss_pred             -cCCcEEEEECCCCceEEEEcc-CCCCCCcCeEE-ECCCC-CEEEEEE-CCCcEEEEEcCCC
Q 001258          594 -DDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIR-FNKDG-CLLAVST-NDNGIKILATSDG  650 (1113)
Q Consensus       594 -~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~-~s~~~-~~l~~~~-~dg~i~iwd~~~~  650 (1113)
                       .++.|.++|..+++.+..+.. ......-.... ++|++ ..++++. .++.|.+++..++
T Consensus       361 ~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          361 NARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             GGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred             CCCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence             689999999999998877764 22111112334 47774 4444443 4578999987653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.66  E-value=1.2e-14  Score=160.46  Aligned_cols=251  Identities=14%  Similarity=0.073  Sum_probs=183.4

Q ss_pred             CCCccEEEEecCCCEEEEEe-C------------------------CeEEEEECCCCceeeeec-CCCCCeeEEEEecCC
Q 001258          818 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD  871 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d  871 (1113)
                      -..+.+++++++|+++++.. +                        ++|.+||..+++.+..+. .+......+++++ +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            45689999999999998887 4                        379999999888876664 3445789999999 8


Q ss_pred             CcEEEEEecCCcEEEEEcccce-eeeee---------cccccCeEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCccccc
Q 001258          872 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN  939 (1113)
Q Consensus       872 ~~~la~g~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~L~s~s-~D~~v~iwd~~~~~~~~~  939 (1113)
                      ++++++...++.|++||..... .+..+         .++.....+|+++| ++.++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8888888889999999976432 45555         34556789999999 888888886 689999999543 22111


Q ss_pred             cccccCCCC---CCCCCCCceEEEccC-CcEEEEE-cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEE--
Q 001258          940 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1012 (1113)
Q Consensus       940 ~~~~~~~~~---~~~~~~i~~~~~spd-g~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-- 1012 (1113)
                       ......+.   .........++++|+ |..+++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++  
T Consensus       181 -~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          181 -WGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             -ECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             -eccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence             00000000   000123688999999 5655553 67899999999999988887666778899999999 433333  


Q ss_pred             -----EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258         1013 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1013 -----~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                           ...+..|++|++.+++.+..+...    .++...+.  .++++| +|+++++...++.|++|++...
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~~~~~p~--~ia~~~-dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RKHFDMPH--DIVASE-DGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCS----SSCCSSEE--EEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CCccCCee--EEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence                 334458999999999998876421    13333333  588888 6788899999999999998753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=5.7e-15  Score=168.35  Aligned_cols=238  Identities=13%  Similarity=-0.017  Sum_probs=153.3

Q ss_pred             cEEEEEcCCCCeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          361 PMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      +.+++|||||++++++...+  ..|.+||+.+++...                   +..++......+.|||||++|+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~   98 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV   98 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence            78899999999855555443  368888998876543                   122222233347899999999999


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecccCCeeE-------------------EEEcCCCCeeEEEEe-----cCCCcEEEE
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKVW  494 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~~~~~~~l~s~-----s~d~~i~iw  494 (1113)
                      +.++.|.+||+.+++...   ....+......                   +.|+|+++.  ++..     ..+..|.+|
T Consensus        99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~  173 (396)
T 3c5m_A           99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV  173 (396)
T ss_dssp             ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred             EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence            999999999999887543   22223332222                   456788874  3333     456789999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCC-CCceEEEEEccCCCe
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGTR  567 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~-~~~v~~~~~s~~~~~  567 (1113)
                      |+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..++|+|+|+ 
T Consensus       174 d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~-  250 (396)
T 3c5m_A          174 DIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGS-  250 (396)
T ss_dssp             ETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSS-
T ss_pred             ECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCC-
Confidence            99988765444 46777888888752 34556555443      35888887654332222211 22345556666555 


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECC-CCCEEEEEEC---
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN---  638 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~---  638 (1113)
                                          +|+.++.+     +.|++||+.+++.........    .. +.|+| ||+++++++.   
T Consensus       251 --------------------~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          251 --------------------AMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             --------------------CEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC-
T ss_pred             --------------------EEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcc
Confidence                                45554432     449999998887654433221    22 89999 9998887653   


Q ss_pred             -------------CCcEEEEEcCCC
Q 001258          639 -------------DNGIKILATSDG  650 (1113)
Q Consensus       639 -------------dg~i~iwd~~~~  650 (1113)
                                   ++.|++||+.++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTT
T ss_pred             eeeccccccccCCCCcEEEEecccC
Confidence                         356888887665

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.65  E-value=6.6e-13  Score=155.30  Aligned_cols=328  Identities=14%  Similarity=0.096  Sum_probs=211.0

Q ss_pred             eEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcC--CCCCeeeeeCCCCceE
Q 001258          480 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEAPGRWCT  557 (1113)
Q Consensus       480 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~  557 (1113)
                      +++++...+++|.++|..+++.+.++... ..+..+.++  ++|+++++++.|+.|.+||+.  +.+....+.. +....
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~S--pDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-G~~P~  243 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLS--ASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-GSEAR  243 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-CSEEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEEC--CCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-CCCCc
Confidence            37888889999999999999999888743 345677754  567899999999999999995  5554444443 23345


Q ss_pred             EEEEc----cCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCC---------CCCcCe
Q 001258          558 TMAYS----ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPASPR  623 (1113)
Q Consensus       558 ~~~~s----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~  623 (1113)
                      .++++    |||+                     +++++. .++.|.++|..+.+.+..+...+.         ...+..
T Consensus       244 ~ia~s~~~~pDGk---------------------~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          244 SIETSKMEGWEDK---------------------YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             EEEECCSTTCTTT---------------------EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             eeEEccccCCCCC---------------------EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            56666    4555                     555544 579999999999998887753321         012334


Q ss_pred             EEECCCCCEEEE-EECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccC
Q 001258          624 IRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  702 (1113)
Q Consensus       624 ~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1113)
                      +..++++..++. ...+|.|.++|..+..                                                   
T Consensus       303 i~~s~~~~~~vv~~~~~g~v~~vd~~~~~---------------------------------------------------  331 (567)
T 1qks_A          303 ILASHYRPEFIVNVKETGKILLVDYTDLN---------------------------------------------------  331 (567)
T ss_dssp             EEECSSSSEEEEEETTTTEEEEEETTCSS---------------------------------------------------
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEecCCCc---------------------------------------------------
Confidence            444544332222 2223444444432210                                                   


Q ss_pred             CCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccc
Q 001258          703 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  782 (1113)
Q Consensus       703 ~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~  782 (1113)
                                                                                             .+.+..+. 
T Consensus       332 -----------------------------------------------------------------------~~~v~~i~-  339 (567)
T 1qks_A          332 -----------------------------------------------------------------------NLKTTEIS-  339 (567)
T ss_dssp             -----------------------------------------------------------------------EEEEEEEE-
T ss_pred             -----------------------------------------------------------------------cceeeeee-
Confidence                                                                                   00000000 


Q ss_pred             cccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecC---
Q 001258          783 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP---  857 (1113)
Q Consensus       783 ~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~---  857 (1113)
                                                        .......+.|+|+|++++++.  +++|.++|+.+++.+..+..   
T Consensus       340 ----------------------------------~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~  385 (567)
T 1qks_A          340 ----------------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ  385 (567)
T ss_dssp             ----------------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             ----------------------------------ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence                                              122345678999999988776  68999999999887766543   


Q ss_pred             --CCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEccc-------ceeeeeecccccCeEEEEEcCCCCEEEEEeC-----
Q 001258          858 --PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-----  922 (1113)
Q Consensus       858 --~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-----  922 (1113)
                        |.+.-..+ ++|+++.+.+++. .++.|.++|..+       .+.++++......-..+.++|++++|.+...     
T Consensus       386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~  464 (567)
T 1qks_A          386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA  464 (567)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred             CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence              32212222 5773355555553 468999999987       6777887765444455789999999988663     


Q ss_pred             --CCcEEEEeCCCCcc---ccc-cccccC--CCCCCCCCCCceEEEccCCcEEEEE------cCCeEEEEeCCccceeec
Q 001258          923 --DSQLCVWSSDGWEK---QKN-RFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQ  988 (1113)
Q Consensus       923 --D~~v~iwd~~~~~~---~~~-~~~~~~--~~~~~~~~~i~~~~~spdg~~l~~~------~d~~v~v~d~~~~~~~~~  988 (1113)
                        ..+|.++|+.+.+.   ... ..+.+.  .+.......+..+.|+|+|+++.++      .++.|.|+|.++++.+..
T Consensus       465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~  544 (567)
T 1qks_A          465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHV  544 (567)
T ss_dssp             HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEE
Confidence              35899999987511   100 111110  0000011367899999999998874      268999999999998777


Q ss_pred             cc
Q 001258          989 WV  990 (1113)
Q Consensus       989 ~~  990 (1113)
                      +.
T Consensus       545 i~  546 (567)
T 1qks_A          545 IK  546 (567)
T ss_dssp             EC
T ss_pred             eC
Confidence            65

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=1.1e-14  Score=178.23  Aligned_cols=335  Identities=9%  Similarity=-0.002  Sum_probs=197.4

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEe--cCCCcEEEEeCCCCceeeEeeccCcCEE---------EEeeeecCCceE-EE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IF  527 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~--s~d~~i~iwd~~~~~~~~~~~~h~~~v~---------~~~~~~~~~~~~-l~  527 (1113)
                      .+.+|...|..++|++++-  ++++.  +.++...||....+.....+..|...+.         ...|+.++||+. |+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la   95 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV   95 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred             HHhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence            3567899999999997654  67777  6788999999765666677777766655         555554467777 66


Q ss_pred             EEec-CCcEEEEEcC--CCCCeeeeeC-----CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC----
Q 001258          528 STAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD----  595 (1113)
Q Consensus       528 s~~~-dg~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----  595 (1113)
                      .++. +..|.+|++.  .......+..     +...+..++|+|||+                     .|++++.+    
T Consensus        96 ~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~---------------------~l~~~~~~~~~~  154 (662)
T 3azo_A           96 FTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERG---------------------EVWCMAEEFTGE  154 (662)
T ss_dssp             EEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTT---------------------EEEEEEEEECSS
T ss_pred             EEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCC---------------------EEEEEEecccCC
Confidence            5543 5566666654  1023333333     233455555555555                     67766655    


Q ss_pred             ------CcEEEEECCC------CceEEEEc-cCCCCCCcCeEEECCCCCEEEEEECCC--------cEEEEEcC-CCcc-
Q 001258          596 ------FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR-  652 (1113)
Q Consensus       596 ------g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~-  652 (1113)
                            ..|++||+.+      ++.. .+. .+  ...+..++|+|||++|+.++.++        .|++||+. ++.. 
T Consensus       155 ~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          155 GPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             STTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred             CCCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence                  5899999988      5543 333 22  23578899999999999887553        57777766 3310 


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      ....+.                                                                          
T Consensus       232 ~~~~l~--------------------------------------------------------------------------  237 (662)
T 3azo_A          232 DTRTLL--------------------------------------------------------------------------  237 (662)
T ss_dssp             EEEEEE--------------------------------------------------------------------------
T ss_pred             ccEEeC--------------------------------------------------------------------------
Confidence            000000                                                                          


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                                     ..+...+..+.|+|||+.++++..++...||.+.                    ..++.......
T Consensus       238 ---------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l~~  282 (662)
T 3azo_A          238 ---------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQLCR  282 (662)
T ss_dssp             ---------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEESSC
T ss_pred             ---------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeeccc
Confidence                           0134567889999999966666667744444332                    11221111000


Q ss_pred             C-----CCCCCCCccEEEEecCCCEEEEEeCCeEEEE--ECCCCceeeeecCCCCCeeEE-EEecCCCcEEEEEecCC--
Q 001258          813 T-----DSNPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS--  882 (1113)
Q Consensus       813 ~-----~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vw--d~~~~~~~~~~~~~~~~i~~l-~~s~~d~~~la~g~~dg--  882 (1113)
                      .     ...-...+..++|++++++++++.++.++||  |+.+++ +..+..+...+..+ +++. +.-++++++.+.  
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~  360 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAY  360 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEE
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCC
Confidence            0     0000112567899999999988876777777  555554 67777777777766 4443 223333444443  


Q ss_pred             cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          883 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      .|++||+.+++.......|...+....+++.....+.+..+..|..|-+
T Consensus       361 ~i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          361 EVVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            5666677777654444455444443344433333443333345655544

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=2.2e-13  Score=147.08  Aligned_cols=248  Identities=14%  Similarity=0.165  Sum_probs=172.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE-cCCCCeE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLF  435 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~l  435 (1113)
                      +-..+.+++++++|+ ++++.+.++.|.+||.. ++.+.....             .....+|...+.++++ .++++++
T Consensus        28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l~   92 (286)
T 1q7f_A           28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDII   92 (286)
T ss_dssp             CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred             ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeEE
Confidence            456789999999998 68888889999999987 544332100             0001245567899999 5778777


Q ss_pred             EEEeC-CCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee--ccCcC
Q 001258          436 GVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAP  511 (1113)
Q Consensus       436 as~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~  511 (1113)
                      ++... ++.|.+|| .+++.+.   .+. .+...+.+++++++|+  ++++...++.|.+||. +++.+..+.  ++...
T Consensus        93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~  165 (286)
T 1q7f_A           93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEF  165 (286)
T ss_dssp             EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCSS
T ss_pred             EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccCC
Confidence            77643 78999999 4555444   232 3456789999999998  7788788899999995 566666664  34566


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      +..+++++  +|.++++...++.|++||... .....+.....                   ......++++++++.+++
T Consensus       166 p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v~  223 (286)
T 1q7f_A          166 PNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILIA  223 (286)
T ss_dssp             EEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEEE
T ss_pred             cEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEEE
Confidence            88888654  567788888899999999743 33333322210                   012334555555556677


Q ss_pred             EecCC-cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          592 AGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       592 ~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+....
T Consensus       224 ~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          224 DNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             ECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             eCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence            66675 9999995 5677777765543334668999999987777 67899999987543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.62  E-value=5.4e-10  Score=139.11  Aligned_cols=544  Identities=10%  Similarity=0.089  Sum_probs=308.8

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      ...|.++...++|..  -.|+.+ -+..||..+++.... ...               .......|.++...++|.+.+.
T Consensus        87 ~n~I~~i~~d~~g~l--WigT~~-Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~  147 (795)
T 4a2l_A           87 NDISRIVKTDSQGRV--WIGTRD-GLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIS  147 (795)
T ss_dssp             CSCEEEEEECTTSCE--EEEESS-CEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred             ccceeEEEECCCCCE--EEEeCC-chheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEE
Confidence            467999999999983  345554 488999877653221 000               0000011888988888877665


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeee-cc-cCC-eeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-eccCcCEE
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEID-AH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVY  513 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l~-~h-~~~-V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~~v~  513 (1113)
                      . .+ .|..||..+++...    +. ++ ... |.++...+++.   +..++.++.|..||..+++..... ..+...|.
T Consensus       148 t-~~-gl~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~  218 (795)
T 4a2l_A          148 T-PE-GLIMFDIKESKFID----DSFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQ  218 (795)
T ss_dssp             E-TT-EEEEEETTTTEEEC----SSSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEE
T ss_pred             E-CC-ceEEEECCCCEEEe----ccCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeE
Confidence            4 34 48899987764322    11 11 123 88898888886   334555556889998776643321 12345687


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeC--------CCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ++...  .++. +..|+.++-|..||..+.... .+..        ....|.++...++|                    
T Consensus       219 ~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~l~~~~i~~i~~d~~g--------------------  274 (795)
T 4a2l_A          219 AILQQ--SPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPSNPKSISSNYIRSLAMDSQN--------------------  274 (795)
T ss_dssp             EEEEE--ETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTTCTTSCSCSBEEEEEECTTS--------------------
T ss_pred             EEEEc--CCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCCCccccCCCeEEEEEEcCCC--------------------
Confidence            77643  3444 555555545888887653322 1111        12234444444444                    


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                       . +..|+.+ -|.+||..+++........     -....|.++...++|.+.+ |+.++-|..|+..++.  +..+...
T Consensus       275 -~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~--~~~~~~~  348 (795)
T 4a2l_A          275 -R-LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRNR--FKNIRNI  348 (795)
T ss_dssp             -C-EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGGS--SEEECCC
T ss_pred             -C-EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCccc--ceEEcCC
Confidence             3 5556655 5889998776544332111     0124578888888887554 6666778888754431  1111000


Q ss_pred             cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258          661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  740 (1113)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  740 (1113)
                      ..                                                                              
T Consensus       349 ~~------------------------------------------------------------------------------  350 (795)
T 4a2l_A          349 PY------------------------------------------------------------------------------  350 (795)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             eecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258          741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  820 (1113)
Q Consensus       741 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~  820 (1113)
                           ........|.++...++|.. -.++.++-+..|+.....+.            .+....+..     ...-....
T Consensus       351 -----~~~l~~~~V~~i~~d~~g~l-WiGt~~~Gl~~~~~~~~~~~------------~~~~~~~~~-----~~~l~~~~  407 (795)
T 4a2l_A          351 -----KNSLSDNVVSCIVEDKDKNL-WIGTNDGGLNLYNPITQRFT------------SYTLQEDES-----ARGIGSNN  407 (795)
T ss_dssp             -----SSSCSCSSEEEEEECTTSCE-EEEESSSCEEEECTTTCCEE------------EECCC-----------CCSCSC
T ss_pred             -----CCCCCCCeeEEEEECCCCCE-EEEECCCCeEEEcCCCCcEE------------EEecCCCCc-----ccCCCCcc
Confidence                 00012356888888888884 44666656776665432211            000000000     00002456


Q ss_pred             ccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      |.+++..++|+.|-+|. ++.|.+||..+++......    .....|.++...+ ++++.+ |+. +.+.+||..+++..
T Consensus       408 v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~  484 (795)
T 4a2l_A          408 IKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFT  484 (795)
T ss_dssp             EEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEE
T ss_pred             EEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEE
Confidence            89999999998444455 6889999988766433221    1235688888887 666555 444 45889998876543


Q ss_pred             eeec------ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          896 SKLK------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       896 ~~l~------~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ....      -+...|.++...++|++.+... + -|..||..++.. .  ..............|.++...++|...+.
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~--~~~~~~~~~l~~~~i~~i~~d~~g~lWig  559 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q--KASILPVSNVTKLFTNCIYEASNGIIWVG  559 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E--ECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred             EccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E--EecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence            3221      1236799999999998777654 4 488899876442 1  11000000011135788888899987766


Q ss_pred             EcCCeEEEEeCCccceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC-c
Q 001258          970 VHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN-V 1047 (1113)
Q Consensus       970 ~~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~-v 1047 (1113)
                      +.. .+..||..+++....-...+ ....|.++...++|.+.+++  ++-|..|+..+++.. .+....    |.... .
T Consensus       560 T~~-Gl~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~d----Gl~~~~f  631 (795)
T 4a2l_A          560 TRE-GFYCFNEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESD----GLQSNQF  631 (795)
T ss_dssp             ESS-CEEEEETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGG----TCSCSCE
T ss_pred             eCC-CceeECCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcC----CCccccC
Confidence            554 78899987765543211111 14568999999999876655  345778898876543 333111    22221 1


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEeccCC
Q 001258         1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1079 (1113)
Q Consensus      1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~ 1079 (1113)
                      ..-++...+ +|++++ |+.+| +..++...-
T Consensus       632 ~~~~~~~~~-~G~l~~-g~~~G-l~~~~p~~~  660 (795)
T 4a2l_A          632 NTASYCRTS-VGQMYF-GGING-ITTFRPELL  660 (795)
T ss_dssp             EEEEEEECT-TSCEEE-EETTE-EEEECGGGC
T ss_pred             ccCceeECC-CCeEEE-ecCCc-eEEEcHHHc
Confidence            111233334 665544 55565 666776543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.61  E-value=7.1e-14  Score=171.13  Aligned_cols=243  Identities=9%  Similarity=-0.014  Sum_probs=159.7

Q ss_pred             eccCCCCcEEEEEcCCCCeEEEEE--ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE-------
Q 001258          354 TLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-------  424 (1113)
Q Consensus       354 ~~~h~~~V~~~~~spdg~~ll~~g--s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-------  424 (1113)
                      ..+|...|..++|++++-+ ++.+  +.++...||....+....                   .+..|...+.       
T Consensus        19 ~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~   78 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS   78 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred             HhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence            3458899999999988653 5555  457889999965443332                   1344444444       


Q ss_pred             --EEEEc--CCCCe-EEEEeC-CCeEEEEEcc--C-Cceeeeeeeeec-----ccCCeeEEEEcCCCCeeEEEEecCC--
Q 001258          425 --RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD--  488 (1113)
Q Consensus       425 --~l~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~~~~~~~l~s~s~d--  488 (1113)
                        ...|+  |||++ |+.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|+|||+  .|++++.|  
T Consensus        79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~  152 (662)
T 3azo_A           79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT  152 (662)
T ss_dssp             CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred             CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence              55565  99999 776654 4556666665  3 43 32   3444     677899999999999  57766665  


Q ss_pred             --------CcEEEEeCCC------CceeeEee-ccCcCEEEEeeeecCCceEEEEEecCC--------cEEEEEcC-CCC
Q 001258          489 --------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDG--------KIKAWLYD-NLG  544 (1113)
Q Consensus       489 --------~~i~iwd~~~------~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~-~~~  544 (1113)
                              ..|++||+.+      ++ ...+. .+...+..++|+  +||++|+.++.++        .|++||+. ++.
T Consensus       153 ~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~S--pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~  229 (662)
T 3azo_A          153 GEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLS--PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGR  229 (662)
T ss_dssp             SSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEEC--TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSC
T ss_pred             CCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceEC--CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCc
Confidence                    5899999987      44 45555 556667667765  5668888777553        79999998 341


Q ss_pred             --Ceee-eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC--cEEEEECCCCceEEEEccCCCC-
Q 001258          545 --SRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL-  618 (1113)
Q Consensus       545 --~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-  618 (1113)
                        .... ...+...+..+.|+|||                     +.++++..++  .|++||..+++.......+... 
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~spdg---------------------~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  288 (662)
T 3azo_A          230 FADTRTLLGGPEEAIAQAEWAPDG---------------------SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA  288 (662)
T ss_dssp             EEEEEEEEEETTBCEEEEEECTTS---------------------CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred             ccccEEeCCCCCceEcceEECCCC---------------------eEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence              2222 22223445555555555                     4566677777  6777777677654433322111 


Q ss_pred             -----CCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          619 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       619 -----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                           ..+.+++|+|+++++++++. +.++||.+
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence                 01567899999999999998 99999944

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.59  E-value=1.1e-09  Score=136.24  Aligned_cols=546  Identities=10%  Similarity=0.067  Sum_probs=314.5

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      ...|+++.-.++|.  |=.|+.+| +..||-.   ..     +.+......    .  ..-....|.++...++|.+.+.
T Consensus        42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~---~f-----~~~~~~~~~----~--~~l~~n~I~~i~~d~~g~lWig  104 (795)
T 4a2l_A           42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGY---AF-----TVYQHNEDD----P--NSIANDISRIVKTDSQGRVWIG  104 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEETTE-EEEECSS---CE-----EEECCCTTC----T--TSCSCSCEEEEEECTTSCEEEE
T ss_pred             cceeEEEEEcCCCC--EEEeecCc-CcccCCC---ce-----EEEeCCCCC----C--CcccccceeEEEECCCCCEEEE
Confidence            46799999999997  33556665 5666632   21     122110000    0  0012357999999999877654


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeeccc----CCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc-CcC-
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP-  511 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h-~~~-  511 (1113)
                       +.+| +..||..+++...    +....    ..|.++...++|.  +.+. +. +.|.+||..+++......++ ... 
T Consensus       105 -T~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi~-t~-~gl~~~~~~~~~~~~~~~~~~~~~~  174 (795)
T 4a2l_A          105 -TRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLIS-TP-EGLIMFDIKESKFIDDSFSTAMHKT  174 (795)
T ss_dssp             -ESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEEE-ET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred             -eCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEEE-EC-CceEEEECCCCEEEeccCCCCCCcc
Confidence             4455 8999988765322    22111    1288999988887  3443 33 45889997766533211111 123 


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeee-eCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      |.++...  .++. +..++.++-|..|+..+....... ......|.++...+++                     . +.
T Consensus       175 i~~i~~d--~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g---------------------~-lw  229 (795)
T 4a2l_A          175 IASTLYR--QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT---------------------R-IW  229 (795)
T ss_dssp             CEEEEEE--ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT---------------------E-EE
T ss_pred             eEEEEEC--CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC---------------------C-EE
Confidence            7777643  3444 555666555888887654322111 0112234444433333                     3 55


Q ss_pred             EEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1113)
                      .++.++-|.+||..+++........     -....|.++...++|.+.+. +.+ -|.+|+..++ .. ..+......  
T Consensus       230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~-~~-~~~~~~~~~--  303 (795)
T 4a2l_A          230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIG-TFN-DLNIYHEGTD-SF-ASYSSNPVE--  303 (795)
T ss_dssp             EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEE-ESS-CEEEEETTTT-EE-EEECCCTTS--
T ss_pred             EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEE-eCC-hhheEcCCCC-eE-EEEecCCCC--
Confidence            5665556899998776544332111     01245788888888886664 444 5888887655 11 111000000  


Q ss_pred             ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258          666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  745 (1113)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  745 (1113)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (795)
T 4a2l_A          304 --------------------------------------------------------------------------------  303 (795)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258          746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  825 (1113)
Q Consensus       746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~  825 (1113)
                      +.......|.++...++|... .++.++-+..|+.....+.            .+.....       ...-....|.+++
T Consensus       304 ~~~l~~~~i~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~------------~~~~~~~-------~~~l~~~~V~~i~  363 (795)
T 4a2l_A          304 NGSLSQRSVRSIFMDSQGGMW-LGTYFGGLNYYHPIRNRFK------------NIRNIPY-------KNSLSDNVVSCIV  363 (795)
T ss_dssp             TTSCSSSCEEEEEECTTSCEE-EEESSSCEEEECGGGGSSE------------EECCCTT-------SSSCSCSSEEEEE
T ss_pred             CCCCCCCcEEEEEEeCCcCEE-EEECCCCeEEeCCCcccce------------EEcCCCC-------CCCCCCCeeEEEE
Confidence            000134568899999999844 4555556666665432221            1110000       0000345689999


Q ss_pred             EecCCCEEEEEeCCeEEEEECCCCceeeeecC--------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      .+++|.+.+...++.|..|+..+++.......        ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus       364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            99999877655577899999887654332211        235688998887 777566688878899999887764332


Q ss_pred             ec----ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258          898 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  973 (1113)
Q Consensus       898 l~----~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~  973 (1113)
                      ..    .+...|.++...++|++.+... +| |.+||..+++.......  ..........|.++...++|...+.+. +
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~i~~d~~g~lWigt~-~  517 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTIEKE--KDGTPVVSKQITTLFRDSHKRLWIGGE-E  517 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEECCBC--TTCCBCCCCCEEEEEECTTCCEEEEES-S
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEcccc--ccccccCCceEEEEEECCCCCEEEEeC-C
Confidence            21    2346799999998888776554 44 88999877543211100  000011114678888999998777766 7


Q ss_pred             eEEEEeCCccceeecccc-----CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc
Q 001258          974 QLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~-----~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~ 1048 (1113)
                      .+..|+..+++. . +..     ......|.++..+++|.+.++.. . -+..||..+++.. .+.....++   ...|.
T Consensus       518 Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~-~~~~~~gl~---~~~i~  589 (795)
T 4a2l_A          518 GLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIK-RYNTTNGLP---NNVVY  589 (795)
T ss_dssp             CEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEE-EECGGGTCS---CSCEE
T ss_pred             ceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEE-EeCCCCCCc---hhheE
Confidence            799999877665 2 210     01245789999999998665443 4 5788998776543 332111121   12343


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                        ++...+ +|++.+++  ++.|..|+..+++
T Consensus       590 --~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          590 --GILEDS-FGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             --EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred             --EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence              244444 56665554  4567888877654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.57  E-value=3.9e-13  Score=149.90  Aligned_cols=220  Identities=10%  Similarity=0.068  Sum_probs=152.0

Q ss_pred             CccEEEEecCCCEEEEEe-C---Ce--EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC------------
Q 001258          820 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------  881 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s-d---g~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d------------  881 (1113)
                      .+..++|||||++|+..+ +   +.  |.+|++.+++.......+ . +..++|+| |++.|+.++.+            
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            467899999999999876 2   33  888898887765544433 3 89999999 88888877642            


Q ss_pred             ---------------CcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccc
Q 001258          882 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN  939 (1113)
Q Consensus       882 ---------------g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-------~v~iwd~~~~~~~~~  939 (1113)
                                     ..|++||+.+++.+..+.. . .+..++|+||| ++++++.+.       ...||.+++++..  
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE--  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence                           5799999998887455554 3 78999999999 887776542       4455555433221  


Q ss_pred             cccccCCCCCCCCCCCceEEEccCCcEEEE-EcC--------CeEEEEeCCccceeeccccCCCCCCeeE-EEECCCCCE
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL 1009 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~ 1009 (1113)
                       .+  ..+     ..+.  .++|||++|+. +.+        ..|.+||  +++......  +|...+.. +.|+ |+ +
T Consensus       212 -~l--~~~-----~~~~--~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          212 -KM--FEK-----VSFY--AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             -EE--EEE-----ESEE--EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred             -Ee--ccC-----ccee--eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence             11  111     1223  33999998887 433        3688888  555443332  55678886 9999 88 8


Q ss_pred             EEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcE-EEEecc
Q 001258         1010 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1077 (1113)
Q Consensus      1010 l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v-~vW~~~ 1077 (1113)
                      +++++.++.++|| +.+++....+        .+.+.|.  .++|+|   .++++++.++.. .+|.+.
T Consensus       276 ~~~~~~~~~~~l~-~~~g~~~~~~--------~~~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWDGEIKPIA--------KGRHWIM--GFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEETTEEEEE-EESSSEEEEE--------CSSSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             EEEEecCCcEEEE-EcCCceEEEe--------cCCCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence            8999999999999 8866553322        2234454  367777   577887777765 788776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=9.1e-13  Score=143.04  Aligned_cols=243  Identities=10%  Similarity=0.079  Sum_probs=166.6

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ....+.....+++|+|+|+.+++++..++.|..||..++  ..                   .+..+...+.+++++|+|
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~-------------------~~~~~~~~~~~l~~~~dg   80 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS-------------------PEMHPSHHQNGHCLNKQG   80 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE-------------------EEESSCSSEEEEEECTTC
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE-------------------EEECCCCCcceeeECCCC
Confidence            334467778999999999977889999999999999876  22                   133456689999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEE----ec-------------CCCcEEEE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVW  494 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s----~s-------------~d~~i~iw  494 (1113)
                      +++++...++.|.+||..+++.........+ ....+.+++++|+|+  ++++    |+             ..+.|..+
T Consensus        81 ~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~  158 (296)
T 3e5z_A           81 HLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRL  158 (296)
T ss_dssp             CEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEE
T ss_pred             cEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEE
Confidence            9888877778999999988764332111111 123578899999998  6676    33             12455555


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCe----eeeeCCCCceEEEEEccCCCeEEe
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      +.. ++ +..+..+......++|++  ++..+++.+.++.|.+|++......    ..+....                 
T Consensus       159 ~~~-g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~-----------------  217 (296)
T 3e5z_A          159 APD-GT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEP-----------------  217 (296)
T ss_dssp             CTT-SC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSS-----------------
T ss_pred             CCC-CC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCC-----------------
Confidence            544 44 445555667788888754  5567788888899999998732222    1111111                 


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSD  649 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~  649 (1113)
                          .....++++++|+.+++.  ++.|.+||.. ++.+..+..+..   +.+++| +|+++.|++++.++ +.-++..+
T Consensus       218 ----~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~  286 (296)
T 3e5z_A          218 ----GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNV  286 (296)
T ss_dssp             ----SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred             ----CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence                123345666666645544  8899999986 777777765532   789999 68999999988763 44445544


Q ss_pred             C
Q 001258          650 G  650 (1113)
Q Consensus       650 ~  650 (1113)
                      .
T Consensus       287 ~  287 (296)
T 3e5z_A          287 R  287 (296)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.55  E-value=8.1e-13  Score=147.30  Aligned_cols=222  Identities=11%  Similarity=0.112  Sum_probs=143.7

Q ss_pred             CCcEEEEEcCCCCeEEEEEe--------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC
Q 001258          359 SSPMSMDFHPVQQTLLLVGT--------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  430 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs--------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  430 (1113)
                      ..+...+|  ||++++.+..        .++.|.+||+.+++...                    +    ..+..++|||
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45677788  9997555432        25679999998876432                    2    3688999999


Q ss_pred             CCCeEEEEeCC---C--eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------------------
Q 001258          431 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------  487 (1113)
Q Consensus       431 dg~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------------------  487 (1113)
                      ||++||.++.+   +  .|.+|++.+++...    +..+.. +..++|+|||+.  |+.++.                  
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence            99999988654   3  47888888876543    223334 999999999995  554442                  


Q ss_pred             ---------CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCC-------cEEEEEcCCCCCeeeeeC
Q 001258          488 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA  551 (1113)
Q Consensus       488 ---------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~  551 (1113)
                               ...|.+||+.+++.+..+.. . .+..++|+  ++| +++++..++       ...+|.+++ .....+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence                     25799999998887555554 3 67777776  566 777776542       445555442 22222221


Q ss_pred             CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC--------CcEEEEECCCCceEEEEccCCCCCCcCe
Q 001258          552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR  623 (1113)
Q Consensus       552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~  623 (1113)
                      + ..+.                       .++|+|++|+.++.+        ..|++||  +++.......+  ...+..
T Consensus       216 ~-~~~~-----------------------~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~  267 (347)
T 2gop_A          216 K-VSFY-----------------------AVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ  267 (347)
T ss_dssp             E-ESEE-----------------------EEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred             C-ccee-----------------------eECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence            1 1111                       125555567666533        4688888  55543333222  235665


Q ss_pred             -EEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          624 -IRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       624 -~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                       +.|+ |+ ++++++.++.+++| +.++
T Consensus       268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence             8999 88 88899999999999 7643

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.54  E-value=1.2e-12  Score=160.88  Aligned_cols=247  Identities=10%  Similarity=-0.012  Sum_probs=163.7

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      |...+..++|||||++|+++.+.+|    +|++||+.+++.+..                  .+..  ..+..++|||||
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg  182 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG  182 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence            4446889999999997444444344    899999999987642                  0111  136779999999


Q ss_pred             CeEEEEeCCCe----------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecC-----CCc
Q 001258          433 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT  490 (1113)
Q Consensus       433 ~~las~~~d~~----------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~  490 (1113)
                      +.|+.++.++.                |++|++.+++.. ........|...+..+.|+|||+.  |+.++.     +..
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR  260 (710)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred             CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence            99999988765                999999887632 111122235666889999999995  444332     678


Q ss_pred             EEEEeCCC------Cc-eeeEeeccCcCEEEEeeeecCCceEEEEEec-C---CcEEEEEcCCCCC--eeeeeCCCC--c
Q 001258          491 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-D---GKIKAWLYDNLGS--RVDYEAPGR--W  555 (1113)
Q Consensus       491 i~iwd~~~------~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-d---g~i~iwd~~~~~~--~~~~~~~~~--~  555 (1113)
                      |++||+.+      +. ....+..+...+... |+++  |..|+..+. +   +.|.+||+.+...  ...+..+..  .
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~d--g~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~  337 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTNE--GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV  337 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEEE--TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEEE-Eecc--CCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence            99999987      53 466777776666553 4443  345544443 2   3699999876542  122322222  3


Q ss_pred             eEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc--EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE
Q 001258          556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  633 (1113)
Q Consensus       556 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  633 (1113)
                      +..++++                     +++..+++...++.  |++|++.+++.+..+..+  ...+..++++|++..+
T Consensus       338 ~~~~~~~---------------------~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l  394 (710)
T 2xdw_A          338 LEWVACV---------------------RSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEI  394 (710)
T ss_dssp             EEEEEEE---------------------TTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEE
T ss_pred             EEEEEEE---------------------cCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEE
Confidence            4444444                     33345677777774  667787778877777655  3467788999998766


Q ss_pred             EEEE----CCCcEEEEEcCCCc
Q 001258          634 AVST----NDNGIKILATSDGI  651 (1113)
Q Consensus       634 ~~~~----~dg~i~iwd~~~~~  651 (1113)
                      +...    ..++|..||+.++.
T Consensus       395 ~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          395 FYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEeCCCCCCEEEEEECCCCc
Confidence            6442    24689999998873

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.53  E-value=1.2e-12  Score=139.25  Aligned_cols=253  Identities=11%  Similarity=0.045  Sum_probs=182.8

Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCe
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI  905 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V  905 (1113)
                      .++.|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++++  +.++.|+.||. +++.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456778877 8999999999999999988766 4789999999 888888  45788999998 899998887653 478


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCcc
Q 001258          906 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL  983 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~  983 (1113)
                      .++.+.+||+++++.+. ++.|..+|.+ ++........  .+..........+++.++|.++++. .++.|.+||.+ |
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            89999999999999887 7777777763 3322211111  1100001234567889999999985 68999999998 9


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      +.+..+..   ...+.++.+.++|.++++++.+++|..+|..+|+.+.++..... + +. .-..+..+...+ +|++++
T Consensus       156 ~~~w~~~~---~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~-~~-~l~~~~~~~~~~-~G~i~v  228 (276)
T 3no2_A          156 QLLNSVKL---SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-E-GV-QLFFVAQLFPLQ-NGGLYI  228 (276)
T ss_dssp             CEEEEEEC---SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-B-SC-CCSEEEEEEECT-TSCEEE
T ss_pred             CEEEEEEC---CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-C-Cc-cccccccceEcC-CCCEEE
Confidence            98888764   24567788899999999998888999999999999988752111 1 10 011222355556 788887


Q ss_pred             EEeCC--------CcEEEEec-cCCCccccCCCCCCCCCCCC
Q 001258         1064 LGLSD--------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1096 (1113)
Q Consensus      1064 s~~~D--------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1096 (1113)
                      +....        +..++.++ ++|+..|......+-|.+++
T Consensus       229 ~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~  270 (276)
T 3no2_A          229 CNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST  270 (276)
T ss_dssp             EEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred             EeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence            76421        24467777 57777888776666665554

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.52  E-value=3.5e-11  Score=130.66  Aligned_cols=281  Identities=11%  Similarity=0.096  Sum_probs=189.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....+.+++++++|+.+++...++.+.+|+.. .                      .........  ....+.+++++++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~----------------------~~~~~~~~~--~~~~~~~i~~~~~   67 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-G----------------------KITEYPLPT--PDAKVMCLTISSD   67 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-C----------------------CEEEEECSS--TTCCEEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-C----------------------CeEEecCCc--ccCceeeEEECCC
Confidence            44678999999999977766667888888653 1                      111111111  3456889999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-ecccccCeE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT  906 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~  906 (1113)
                      |+++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus        68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~  144 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS  144 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence            99888776 7889999986 3321 22223455789999999 7888887777889999998 5544322 233456789


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  985 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~  985 (1113)
                      ++++.++|+++++...++.|..||. +++...   ......    ...+..++++++|..+++. .++.|.+||. +++.
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            9999999998888777888999998 543321   111111    1246789999999977665 4788999999 6664


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      .. +....+...+.+++++++|++.++...++.|.+||. +++.. .+.    .+ ++...+.  .+++ + +|++.++.
T Consensus       216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~-~~~~~~~--~i~~-~-~g~l~v~~  283 (299)
T 2z2n_A          216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQ-IKSAEPH--GICF-D-GETIWFAM  283 (299)
T ss_dssp             EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CS-SSSCCEE--EEEE-C-SSCEEEEE
T ss_pred             EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CC-CCCCccc--eEEe-c-CCCEEEEe
Confidence            33 322334567999999999997766657889999998 45432 322    11 2223344  4566 5 67776665


Q ss_pred             eCCCcEEEEeccCCC
Q 001258         1066 LSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1066 ~~Dg~v~vW~~~~~~ 1080 (1113)
                      . .+.|..+++.+++
T Consensus       284 ~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          284 E-CDKIGKLTLIKDN  297 (299)
T ss_dssp             T-TTEEEEEEEC---
T ss_pred             c-CCcEEEEEcCccc
Confidence            4 6778888877653

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=9.8e-12  Score=135.53  Aligned_cols=205  Identities=11%  Similarity=0.081  Sum_probs=142.8

Q ss_pred             CccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceee
Q 001258          820 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK  895 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~  895 (1113)
                      ....++++|||++++++.   ++.|.++|+.+++.+.++....  + ...+.. +.+.+++.+.||.+.+.++.+ ++..
T Consensus       138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~  213 (386)
T 3sjl_D          138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE  213 (386)
T ss_dssp             CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred             CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence            456789999999888775   4789999999999988885322  1 233433 667777888899999999876 5543


Q ss_pred             eeecccc----cCeE-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEEccC
Q 001258          896 SKLKGHS----KRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       896 ~~l~~h~----~~V~-~l~~s-~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~spd  963 (1113)
                      .....+.    .++. ...|. ++|++++ .+.+++|.+.|+.+............      .+-.+  .....++++++
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~  290 (386)
T 3sjl_D          214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRA  290 (386)
T ss_dssp             EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETT
T ss_pred             EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCC
Confidence            2221121    2222 24554 6775555 66689999999976542111111100      11111  24456888999


Q ss_pred             CcEEEEEc-----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCcee
Q 001258          964 QIHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLR 1030 (1113)
Q Consensus       964 g~~l~~~~-----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~ 1030 (1113)
                      ++.+++..           ...|.++|+.+++.+..+..   ...+.+++|++|++ +|++.. .++.|.|+|..+++.+
T Consensus       291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence            99988842           14699999999999999876   34788999999997 677655 4899999999999999


Q ss_pred             eecC
Q 001258         1031 CRIN 1034 (1113)
Q Consensus      1031 ~~~~ 1034 (1113)
                      .++.
T Consensus       368 ~~i~  371 (386)
T 3sjl_D          368 RSVN  371 (386)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8886

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.52  E-value=7.8e-13  Score=162.62  Aligned_cols=244  Identities=14%  Similarity=0.069  Sum_probs=167.6

Q ss_pred             CCCCccEEEEecCCCEEEEEe--CC----eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCc-------
Q 001258          817 PEEAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS-------  883 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~-------  883 (1113)
                      +...+..++|||||++|+.+.  +|    +|++||+.+++.......+ ..+..++|+| ||+.|+.++.++.       
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wsp-Dg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTH-DGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECT-TSSEEEEEECCCCSSCCSSS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEe-CCCEEEEEEECCcccccccc
Confidence            334578899999999999876  23    8999999998876533222 2367899999 8999998887765       


Q ss_pred             ---------EEEEEcccce----eeeeecccccCeEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC------Cccccc
Q 001258          884 ---------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGA-----DSQLCVWSSDG------WEKQKN  939 (1113)
Q Consensus       884 ---------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-----D~~v~iwd~~~------~~~~~~  939 (1113)
                               |++|++.+++    ++.....|...+.++.|||||++|+.++.     +..|++||+.+      +... .
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~  279 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILK-W  279 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC-C
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccc-e
Confidence                     9999998865    22233335666889999999999988765     56899999976      3211 1


Q ss_pred             cccccCCCCCCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEE
Q 001258          940 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       940 ~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                      ..+.   .+.   ..+ ...|+|+|..|+. +.    ...|.+||+.++..  ...+..+.....+..++|++++.++++
T Consensus       280 ~~l~---~~~---~~~-~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~  352 (710)
T 2xdw_A          280 VKLI---DNF---EGE-YDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLC  352 (710)
T ss_dssp             EEEE---CSS---SSC-EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEE
T ss_pred             EEee---CCC---CcE-EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEE
Confidence            1111   111   122 2358999998887 33    23699999988742  233332111236888999988888899


Q ss_pred             EeCCCc--EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE-EEeC---CCcEEEEeccCCC
Q 001258         1013 CFLDAT--VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA-LGLS---DGGVHVFEPLESE 1080 (1113)
Q Consensus      1013 ~~~Dg~--v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~-s~~~---Dg~v~vW~~~~~~ 1080 (1113)
                      ...|+.  |++|++.+++....+.       .+.+.+.  .+.++| ++..++ +.+.   .++|+.||+.+++
T Consensus       353 ~~~~g~~~l~~~~~~~g~~~~~l~-------~~~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          353 YLHDVKNTLQLHDLATGALLKIFP-------LEVGSVV--GYSGQK-KDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTEEEEEEEETTTCCEEEEEC-------CCSSEEE--EEECCT-TCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCEEEEEEEECCCCCEEEecC-------CCCceEE--EEecCC-CCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            988985  5667776787766665       3334444  367777 555554 3332   4789999998877

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.51  E-value=3e-12  Score=141.71  Aligned_cols=194  Identities=14%  Similarity=0.085  Sum_probs=133.2

Q ss_pred             cceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCc
Q 001258          421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  500 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~  500 (1113)
                      ..|.+++|++++..++..+.++.++.|   .++.+.   .+..+...+.+++|+++|+  +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            357888999999888888888999999   233333   5667777889999999998  77788889999999998887


Q ss_pred             eeeEeeccCcCEEEEeeeecCCceEEEEEecC----CcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEecccc
Q 001258          501 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       501 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      .......+...+.+++++  ++|.++++...+    +.|.+||..+......+.  .....+..++++++|         
T Consensus        78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g---------  146 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---------  146 (333)
T ss_dssp             EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---------
T ss_pred             EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC---------
Confidence            665554567789999875  455677776666    689999987655432222  122334445555444         


Q ss_pred             CceeEEEecCCCCEEEEEec------CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEEc
Q 001258          575 RSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILAT  647 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~  647 (1113)
                                  +.+++...      .+.|..||..+++.......   ...+..++|+|+++.++++ +.++.|.+|+.
T Consensus       147 ------------~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          147 ------------GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             ------------CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             ------------CEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence                        44544432      35677777665554433221   1246789999999866544 45678888887


Q ss_pred             C
Q 001258          648 S  648 (1113)
Q Consensus       648 ~  648 (1113)
                      .
T Consensus       212 ~  212 (333)
T 2dg1_A          212 E  212 (333)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=4e-08  Score=122.00  Aligned_cols=607  Identities=11%  Similarity=0.087  Sum_probs=318.9

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      ...|+++.-..+|.  |=.|+.+| +..||-.+   .     +.+.... .. ..  ...-....|.++...++|..|-.
T Consensus        18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f-----~~~~~~~-~~-~~--~~~l~~n~I~~i~~d~~g~~lWi   82 (781)
T 3v9f_A           18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---F-----ITYYKEE-QS-SS--VQSITGNELNEVYTDPVQPVIWI   82 (781)
T ss_dssp             CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---E-----EEECCCS-SC-SS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred             cCEeEEEEECCCCC--EEEccCCc-CccccCCc---e-----EEEEcCC-CC-Cc--cccccccccceEEEcCCCCEEEE
Confidence            46799999999997  44455665 66677432   1     1221100 00 00  00011346999999988883445


Q ss_pred             EeCCCeEEEEEccCCceeeeeee-eec---ccCCeeEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCceeeEeec----
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG----  507 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~----  507 (1113)
                      |+.++-+..||..+++....... ...   ....|.++....  ++.   +..++.++.|..+|..+++... +..    
T Consensus        83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~  158 (781)
T 3v9f_A           83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVP  158 (781)
T ss_dssp             EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCT
T ss_pred             EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCccc
Confidence            66674599999987653221000 000   123688888887  665   4445545568889977665432 221    


Q ss_pred             --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                        ....|.++..  +.++ .|..++.++-|..||..+.... .+.....          ..   .......+..+..+++
T Consensus       159 ~l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~~---~~l~~~~i~~i~~d~~  221 (781)
T 3v9f_A          159 ALPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHDPQ----------NP---NSLPGNDVRCIYKDTN  221 (781)
T ss_dssp             TCSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTT
T ss_pred             CCCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecCCC----------Cc---ccCCCCceeEEEEcCC
Confidence              1245777764  3344 4555666656888887653221 1110000          00   0000112334444444


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                      +. |..++.+ -+.+||..+++........     -....|.++...++|.+.+ |+..+-|.+++..++. .. .+...
T Consensus       222 g~-lwigt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~-~~-~~~~~  296 (781)
T 3v9f_A          222 GN-IWIGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQ-FL-LPEQI  296 (781)
T ss_dssp             CC-EEEEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------
T ss_pred             CC-EEEEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCe-ee-eeecc
Confidence            44 5555555 6889998776543221111     1124588888888887554 5665678888876652 11 11100


Q ss_pred             cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258          661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  740 (1113)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  740 (1113)
                      ............ .+                          ..-.-..........+-.|..++-+..++.....    +
T Consensus       297 ~f~~~~~~~~~~-~l--------------------------~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~----~  345 (781)
T 3v9f_A          297 RFEFIREGDNNY-SL--------------------------SNASARYIFQDSFNNIWIGTWGGGINFISNAPPT----F  345 (781)
T ss_dssp             -CEEECBCSSTT-SB--------------------------SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCS----C
T ss_pred             ccccccCCCCCC-CC--------------------------CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCc----c
Confidence            000000000000 00                          0000000001112334455555666666654321    1


Q ss_pred             eeccc------CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          741 RSLRL------PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       741 ~~~~~------~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                      ..+..      ........|.++...++|... .++.++-+..|+.....+..            +.  .        ..
T Consensus       346 ~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~------------~~--~--------~~  402 (781)
T 3v9f_A          346 HTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKRVAIY------------NK--E--------NR  402 (781)
T ss_dssp             EEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEEEEEC------------C--------------
T ss_pred             eeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCCeEEE------------cc--C--------CC
Confidence            11110      111234679999999888844 55555556667654321110            00  0        00


Q ss_pred             CCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      ......|.+++..++|.+.+...++.|..++..+++......  .....|.++...+ ++.+.+ |+. +.|..||..++
T Consensus       403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK  479 (781)
T ss_dssp             -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred             CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence            013467889999888887765446789999987765432221  1345688888877 665444 555 56889998876


Q ss_pred             eeeeeeccc-----ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258          893 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       893 ~~~~~l~~h-----~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l  967 (1113)
                      +........     ...|.++...++|++.+....+| |..||..+++...   .....+  .....|.++...++|...
T Consensus       480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~--l~~~~i~~i~~d~~g~lW  553 (781)
T 3v9f_A          480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEG--FCSNTINQIYRSSKGQMW  553 (781)
T ss_dssp             SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTT--CSCSCEEEEEECTTSCEE
T ss_pred             eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCC--CCCCeeEEEEECCCCCEE
Confidence            543322222     46799999999988776544355 7888877643221   111111  122467888888999877


Q ss_pred             EEEcCCeEEEEeCCccceeeccccCC-CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258          968 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus       968 ~~~~d~~v~v~d~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
                      +.+.+|-+..||..+++...--...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+....    |....
T Consensus       554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~d----Gl~~~  626 (781)
T 3v9f_A          554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSN----NIPQG  626 (781)
T ss_dssp             EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGG----TCCSS
T ss_pred             EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccC----Ccccc
Confidence            77664444889987765432211111 1356889999998876655 4455 777888766543 333111    22222


Q ss_pred             cc-ceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1047 VH-PLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1047 v~-~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .. .-++...+ +|.+ ..|+.+| +..++...
T Consensus       627 ~f~~~~~~~~~-~G~l-~~g~~~G-l~~f~p~~  656 (781)
T 3v9f_A          627 SFISGCVTKDH-NGLI-YFGSING-LCFFNPDI  656 (781)
T ss_dssp             CEEEEEEEECT-TSCE-EEEETTE-EEEECSCC
T ss_pred             ccccCceEECC-CCEE-EEECCCc-eEEEChhh
Confidence            11 11233333 6654 4455666 66777654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.51  E-value=4.7e-13  Score=164.04  Aligned_cols=241  Identities=12%  Similarity=0.041  Sum_probs=161.7

Q ss_pred             CCCCccEEEEecCCCEEEEEe------CCeEEEEECCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEecCCc------
Q 001258          817 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSS------  883 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s------dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~------  883 (1113)
                      |...+.+++|||||++||.+.      +.+|++||+.+++.+ .... .......++|+| ||+.|+.++.|..      
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~~  196 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTP-DSKGFYYEWLPTDPSIKVD  196 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECT-TSSEEEEEECCCCTTSCGG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEec-CCCEEEEEEecCCCCCccc
Confidence            455688999999999999653      257999999998865 2111 111126899999 8899998888765      


Q ss_pred             -------EEEEEcccce----eeeeecccccCeEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccccccCCCC
Q 001258          884 -------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGR  948 (1113)
Q Consensus       884 -------v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~----~v~iwd~~~~~~~~~~~~~~~~~~  948 (1113)
                             |++|++.+++    ++.....|...+.++.|||||++|+.++.++    .|++|+..+++.   ..+....  
T Consensus       197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~--  271 (695)
T 2bkl_A          197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV--  271 (695)
T ss_dssp             GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS--
T ss_pred             cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC--
Confidence                   9999998765    3444445667889999999999999887666    677776544322   1111111  


Q ss_pred             CCCCCCCceEEEccCCcEEEE-Ec----CCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEE
Q 001258          949 TPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1021 (1113)
Q Consensus       949 ~~~~~~i~~~~~spdg~~l~~-~~----d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~v 1021 (1113)
                          ..+....+ ++|. ++. +.    ++.|.+||+.+++.  ...+....+...+..++|+ ++.++++...|+..+|
T Consensus       272 ----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l  344 (695)
T 2bkl_A          272 ----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEV  344 (695)
T ss_dssp             ----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEE
T ss_pred             ----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEE
Confidence                13445555 6777 555 43    47899999988753  2233322225568889998 7788899999999888


Q ss_pred             EecC-CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE-EEe---CCCcEEEEeccCCC
Q 001258         1022 FSAA-NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1080 (1113)
Q Consensus      1022 wd~~-~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~-s~~---~Dg~v~vW~~~~~~ 1080 (1113)
                      |.++ +++....+..      ...+.+..  ++++| |+..++ +.+   ..++|++||+.+++
T Consensus       345 ~~~~~~g~~~~~l~~------~~~~~v~~--~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          345 RVATLKGKPVRTVQL------PGVGAASN--LMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEETTCCEEEECCC------SSSSEECC--CBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEeCCCCeeEEecC------CCCeEEEE--eecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            8665 4555544431      11333443  56677 566655 332   34789999999887

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=4.1e-12  Score=139.65  Aligned_cols=273  Identities=10%  Similarity=0.011  Sum_probs=183.6

Q ss_pred             CCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecC
Q 001258          722 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  801 (1113)
Q Consensus       722 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~  801 (1113)
                      .+++|.++|..+.+......... ...........+++. +++.+++...++.|.+||..                    
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~--------------------   72 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDIN--------------------   72 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETT--------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECc--------------------
Confidence            47889999987644322211000 001122345677774 34445555567889888765                    


Q ss_pred             CCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCC-----CCeeEEEEecCCCcEE
Q 001258          802 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII  875 (1113)
Q Consensus       802 ~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l  875 (1113)
                        +++.+... .   ....+..++++++++..++.. ++.|.+||..+++....+....     .....+++ . +++++
T Consensus        73 --t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           73 --TFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             --TCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             --ccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence              33332211 1   235678899999996555553 8999999999988877665333     14566777 3 66666


Q ss_pred             EEEe-cCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCcccccccccc
Q 001258          876 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI  944 (1113)
Q Consensus       876 a~g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D----------~~v~iwd~~~~~~~~~~~~~~  944 (1113)
                      ++.. .++.|.+||+.+++.+..+... .....++++++|++++++..+          +.|.+||..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            6554 4889999999999888777643 345789999999988777655          789999998865432  1222


Q ss_pred             CCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEE----eCCCcE
Q 001258          945 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYAC----FLDATV 1019 (1113)
Q Consensus       945 ~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~----~~Dg~v 1019 (1113)
                      ..+     .....++|+||+++++++.. .|.+||..+++.........+......++++|++.. .++.    ..++.|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     24689999999999988755 999999998886532222122467899999995554 4454    468899


Q ss_pred             EEEecCCCceeeecC
Q 001258         1020 CVFSAANLKLRCRIN 1034 (1113)
Q Consensus      1020 ~vwd~~~~~~~~~~~ 1034 (1113)
                      .+||.+ ++.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 88887775

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.51  E-value=2.2e-12  Score=141.87  Aligned_cols=238  Identities=11%  Similarity=0.114  Sum_probs=168.6

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      .....+++. +++..++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            345667774 334444444 7999999999999988885 345688999998 676555554789999999999988776


Q ss_pred             ecccc-----cCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-
Q 001258          898 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  970 (1113)
Q Consensus       898 l~~h~-----~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-  970 (1113)
                      +....     .....+++ .+++.+++.. .+++|.+||+.+++....  +.  .+     .....++++|+|++++++ 
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~--~g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LT--IG-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EE--CS-----SCBCCCEECTTSEEEEEBC
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EE--cC-----CCccceEEcCCCCEEEEEC
Confidence            65433     14567777 3444444433 488999999998654322  11  11     134678999999977774 


Q ss_pred             cC----------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccC
Q 001258          971 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1040 (1113)
Q Consensus       971 ~d----------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~ 1040 (1113)
                      .+          +.|.++|..+++....+.... ...+..++|+||+++|+++..  .|.+||..+++.....    ..+
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----eec
Confidence            22          689999999998876665321 346899999999999988754  8999999988764211    111


Q ss_pred             CCcccCccceEEEEeCCCCCEEEEE----eCCCcEEEEeccCCC
Q 001258         1041 AGVSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1041 ~gh~~~v~~i~~~~~p~d~~~l~s~----~~Dg~v~vW~~~~~~ 1080 (1113)
                       ....  .+-.++++|.+++++++.    ..+++|.+|+.. ++
T Consensus       264 -~~~~--~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~  303 (328)
T 3dsm_A          264 -FRDT--KYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GK  303 (328)
T ss_dssp             -CCSS--CEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CC
T ss_pred             -CCCC--ceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CC
Confidence             1112  233588888777788887    678999999998 66

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.50  E-value=2.7e-12  Score=139.22  Aligned_cols=235  Identities=8%  Similarity=-0.043  Sum_probs=162.2

Q ss_pred             CCCCccEEEEecCCC-EEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258          817 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~-~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  894 (1113)
                      +.....+++|+|+|+ +++++. ++.|..|+..++  ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence            345578999999999 555665 799999999887  566666777899999999 888888777778999999988775


Q ss_pred             eeeeccc----ccCeEEEEEcCCCCEEEEEeC-----------------CCcEEEEeCCCCccccccccccCCCCCCCCC
Q 001258          895 KSKLKGH----SKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  953 (1113)
Q Consensus       895 ~~~l~~h----~~~V~~l~~s~d~~~L~s~s~-----------------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~  953 (1113)
                      .......    ...+.+++++|+|+++++.+.                 .+.|..++.. ++.     .... ...   .
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~-~~~---~  172 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPI-RDR---V  172 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEE-CCC---S
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-----EEee-cCC---C
Confidence            4333221    235678999999999987431                 2334444443 221     1111 111   2


Q ss_pred             CCceEEEccCCcEEEEE-cCCeEEEEeCC-ccce---eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258          954 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus       954 ~i~~~~~spdg~~l~~~-~d~~v~v~d~~-~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
                      ....++|+|||+.+++. .++.|.+|++. +++.   ...+  ..+...+..++++++|+++++.  ++.|.+|+.. ++
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            45789999999998554 56899999986 5554   2333  2346677899999999876665  8899999987 77


Q ss_pred             eeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1029 LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1029 ~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .+..+.       .+.. +.  .++|...+++.|.+++.+ .+.-++..+.+
T Consensus       248 ~~~~~~-------~~~~-~~--~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~  288 (296)
T 3e5z_A          248 ELGRVL-------TPQT-TS--NLCFGGPEGRTLYMTVST-EFWSIETNVRG  288 (296)
T ss_dssp             EEEEEE-------CSSC-CC--EEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred             EEEEEE-------CCCC-ce--eEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence            776665       3333 44  477753377888887765 34444554433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.50  E-value=4.3e-11  Score=133.13  Aligned_cols=204  Identities=9%  Similarity=0.010  Sum_probs=140.3

Q ss_pred             ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ...++++|||++|+++.   ++.|.++| .+++.+.. +...    .++.+.|.+.+.+++.+.||.+.++|. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~----~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP----TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC----ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            34688999999988875   36799999 99888777 5432    135566645567777888999999999 877663


Q ss_pred             eec-----ccccC-eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCCceEEEccCCcE
Q 001258          897 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       897 ~l~-----~h~~~-V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~spdg~~  966 (1113)
                      ...     ....+ .....+.+++..++..+.++.+.+.|+.+..............    ..........++++||++.
T Consensus       201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            321     11122 1234567776665555578889999987643211111111100    0000122345889999998


Q ss_pred             EEEE-c----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258          967 FLVV-H----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       967 l~~~-~----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      ++++ .          .+.|.++|..+++.+..+..   .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            8874 2          24799999999999888864   33689999999999 777777 4899999999999999773

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.50  E-value=3.1e-11  Score=133.52  Aligned_cols=247  Identities=13%  Similarity=0.071  Sum_probs=162.6

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ....+...+.+++|+|+|+ +++++..++.|.+||..+++....                   ...+...+.+++|+|+|
T Consensus        39 ~~~~~~~~~~~~~~~~~g~-l~~~~~~~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~i~~~~dg   98 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDG   98 (333)
T ss_dssp             EEESSCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTS
T ss_pred             EEeccCccccCcEECCCCC-EEEEECCCCEEEEEeCCCCcEEEE-------------------eeCCCCCcceEEECCCC
Confidence            3344777889999999999 688888899999999988765431                   22345689999999999


Q ss_pred             CeEEEEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCcee
Q 001258          433 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQ  502 (1113)
Q Consensus       433 ~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~  502 (1113)
                      +++++...+    +.|.+||..++...... .-..+...+.+++++|+|+  ++++...      .+.|..||..+++..
T Consensus        99 ~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~l~~~~~~~~~~~  175 (333)
T 2dg1_A           99 RLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVT  175 (333)
T ss_dssp             CEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             cEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCCC--EEEEeccccccCCCceEEEEeCCCCEEE
Confidence            988887766    68999999887643211 1113456799999999998  5555543      355666665555543


Q ss_pred             eEeeccCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCC-CCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          503 YIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       503 ~~~~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                       .+..+...+..++|++  ++..+ ++.+.++.|.+||+.+. .....+..      .+.....+        ......+
T Consensus       176 -~~~~~~~~~~~i~~~~--dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~------~~~~~~~~--------~~~~~~i  238 (333)
T 2dg1_A          176 -PIIQNISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGA------TIPYYFTG--------HEGPDSC  238 (333)
T ss_dssp             -EEEEEESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEE------EEEEECCS--------SSEEEEE
T ss_pred             -EeecCCCcccceEECC--CCCEEEEEeCCCCeEEEEEecCCCcCcccccc------eEEEecCC--------CCCCCce
Confidence             3333444577788654  45544 55566889999998642 22211100      00000000        0133446


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECCC
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTNDN  640 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg  640 (1113)
                      +++++++.+++...++.|.+||. +++.+..+....    +...+.+++|+||++.|++++.++
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred             EECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence            77777776777777899999998 566666665432    112578999999987777666553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.48  E-value=6.2e-12  Score=134.36  Aligned_cols=239  Identities=10%  Similarity=0.041  Sum_probs=165.2

Q ss_pred             CccEEEEecCCCEEE-EEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          820 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||.........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678999999999666 434 68999999866543322223335688999999 777666555 88999999876543222


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  976 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~  976 (1113)
                      .......+.+++++++|+++++...++.|.+|+..+.....     .....   ...+..++++++|+.+++. .++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~---~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG---LNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS---CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc---CCCceeEEEeCCCCEEEEECCCCEEE
Confidence            22333678999999999988887788899999765432211     11111   1256889999999976665 568999


Q ss_pred             EEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeC
Q 001258          977 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHP 1056 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p 1056 (1113)
                      +||..+........  .+...+.+++++++|.++++...++.|.+|+..+..... +.      ..+...  +..+++.|
T Consensus       175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~~~~~~--p~~i~~~~  243 (270)
T 1rwi_B          175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------FTGLNT--PLAVAVDS  243 (270)
T ss_dssp             EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------CCSCSC--EEEEEECT
T ss_pred             EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------cCCCCC--ceeEEECC
Confidence            99988766544322  223678999999999777777778899999987654432 11      111122  33578888


Q ss_pred             CCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1057 QEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1057 ~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                       +|+++++...++.|+++++...+
T Consensus       244 -~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          244 -DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             -CCCEEEEECCCCEEEEEcCCCcc
Confidence             67888999999999999988765

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.48  E-value=8.9e-13  Score=161.55  Aligned_cols=246  Identities=10%  Similarity=-0.043  Sum_probs=159.5

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEec----CCcEEEEecCCccee-EeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~----dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      |...+.+++|||||++|+++.+.    +.+|++||+.+|+.+ ..                  .+.+.  ....++||||
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD  178 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD  178 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence            55578999999999975444433    458999999998754 10                  01111  1267999999


Q ss_pred             CCeEEEEeCCCe-------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC----cEEE
Q 001258          432 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV  493 (1113)
Q Consensus       432 g~~las~~~d~~-------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~----~i~i  493 (1113)
                      |+.|+.++.|..             |++|++.++... ..+.....|...+..+.|+|||+.  |+.++.++    .|.+
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW  256 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence            999999988776             999999987632 122233456678999999999995  44444444    6777


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe---cCCcEEEEEcCCCCC--eeeeeCC--CCceEEEEEccCCC
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAP--GRWCTTMAYSADGT  566 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~--~~~v~~~~~s~~~~  566 (1113)
                      ||..++. ...+..+...+....+ +  +|.+++...   .++.|.+||+.+...  ...+..+  ...+..++++    
T Consensus       257 ~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~----  328 (695)
T 2bkl_A          257 KRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV----  328 (695)
T ss_dssp             ECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE----
T ss_pred             EcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE----
Confidence            7765554 4555556655555554 2  345444443   257899999876542  1222222  2234444443    


Q ss_pred             eEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC----CCc
Q 001258          567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNG  641 (1113)
Q Consensus       567 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~  641 (1113)
                                        ++..+++...++..++|.+. +++....+..+. ...+..++++|+++.++....    .++
T Consensus       329 ------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          329 ------------------GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             ------------------TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             ------------------CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence                              23357778888888888654 455555554432 235778889999987774433    467


Q ss_pred             EEEEEcCCCc
Q 001258          642 IKILATSDGI  651 (1113)
Q Consensus       642 i~iwd~~~~~  651 (1113)
                      |++||+.++.
T Consensus       390 v~~~d~~~g~  399 (695)
T 2bkl_A          390 IYKTSVSTGK  399 (695)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCc
Confidence            9999998873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.48  E-value=2e-10  Score=124.57  Aligned_cols=239  Identities=10%  Similarity=0.003  Sum_probs=162.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +...+.+++++++|+ ++++...++.|.+||.. ++....                  .+..+...+.+++++++|.+++
T Consensus        13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   72 (299)
T 2z2n_A           13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF   72 (299)
T ss_dssp             SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence            457899999999998 46665557899999988 543221                  1122346799999999999888


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE-eeccCcCEEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSV  515 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~-~~~h~~~v~~~  515 (1113)
                      +...++.|..||.. ++ +... .+......+.++++.++|.  ++++...++.|.+||. +++.... ...+...+..+
T Consensus        73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i  146 (299)
T 2z2n_A           73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFI  146 (299)
T ss_dssp             EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceE
Confidence            87778889999986 33 2211 2223456799999999998  6777777889999998 6554332 23344567888


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeee-eeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      ++.  ++|.+.++...++.|..||. ++..... .......+.                     .+++++++..+++...
T Consensus       147 ~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~---------------------~i~~~~~g~l~v~~~~  202 (299)
T 2z2n_A          147 TLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPV---------------------GITKGNDDALWFVEII  202 (299)
T ss_dssp             EEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE---------------------EEEECTTSSEEEEETT
T ss_pred             EEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcce---------------------eEEECCCCCEEEEccC
Confidence            864  45567777767788999987 4332211 111122233                     4455555555555556


Q ss_pred             CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          595 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                      ++.|.+||. +++... +........+.+++++++|+++++...++.|..|+.
T Consensus       203 ~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          203 GNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             TTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             CceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            789999999 666433 332323346789999999997777667788999987

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.47  E-value=6.6e-12  Score=134.14  Aligned_cols=239  Identities=8%  Similarity=0.026  Sum_probs=160.0

Q ss_pred             CcEEEEEcCCCCeEEE-EEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          360 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~-~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      ...+++++++|+ +++ +.+.++.|.+||..++....                   ....+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence            789999999998 566 54678999999976554321                   112233467889999999976666


Q ss_pred             eCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEee
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  517 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~  517 (1113)
                      . ++.|.+||..+.....    +. .....+.+++++++|+  ++++...++.|.+|+..+.............+..+++
T Consensus        85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 8899999987754321    22 2335789999999998  6777777889999986555433322223345667776


Q ss_pred             eecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCc
Q 001258          518 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  597 (1113)
Q Consensus       518 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  597 (1113)
                      .  ++|.++++...++.|.+||................+.                     .+++++++..+++...++.
T Consensus       158 ~--~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~---------------------~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          158 D--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPW---------------------GIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             C--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEE---------------------EEEECTTCCEEEEETTTSC
T ss_pred             e--CCCCEEEEECCCCEEEEEecCCCceEeecccCCCCce---------------------EEEECCCCCEEEEECCCCc
Confidence            5  4556777777788999999875432221111112333                     4555555545666667889


Q ss_pred             EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       598 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      |.+|+........ ... .+...+.+++++++|+++++...++.|++++....
T Consensus       215 v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEEcCCCCccee-ecc-CCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            9999987654432 221 22245789999999998888888999999987654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=3.2e-08  Score=122.84  Aligned_cols=510  Identities=11%  Similarity=0.061  Sum_probs=282.9

Q ss_pred             CCcEEEEEcC--CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          359 SSPMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       359 ~~V~~~~~sp--dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ..|+++....  +|.  |-.|+.++.|..||..+++....      ....        ...-....|.++...++|.+.+
T Consensus       115 ~~i~~i~~d~~~~g~--lwi~t~~~gl~~~~~~~~~~~~~------~~~~--------~~~l~~~~i~~i~~d~~g~lwi  178 (781)
T 3v9f_A          115 NDVTHITSSVQAGKG--LWVCTYYRGIEYLDIATGKFTHY------NKST--------VPALPSEQTWTATEAEDGKLYI  178 (781)
T ss_dssp             SCEEEEEECSSTTSE--EEEEESSSCEEEEETTTTEEEEE------STTT--------CTTCSCCCEEEEEEEETTEEEE
T ss_pred             CcceEEEecCccCCC--EEEEECCCCeeEEECCCCeEEee------ccCc--------ccCCCccceEEEEECCCCCEEE
Confidence            4689998888  776  34455456688999877653221      0000        0001234688998888887665


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeee----ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec-----
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----  507 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----  507 (1113)
                       |..++-|..||..+++........    .-....|.++...++|.  +.+ |..+ -+.+||..+++.......     
T Consensus       179 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~--lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~  253 (781)
T 3v9f_A          179 -GHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGN--IWI-GTSK-GLALFNANTETFTNFHNNPGNIH  253 (781)
T ss_dssp             -EETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEC---------
T ss_pred             -EecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCC--EEE-EeCC-cHheECCCCCcEEEEEcCCCccc
Confidence             555545888998876532210000    00135699999988887  333 4444 688999777654332111     


Q ss_pred             --cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       508 --h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                        ....|.++.  .+.+| .|..|+..+-|.++|..+.........   ....+. .+...   .+.....+..+..+++
T Consensus       254 ~l~~~~i~~i~--~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~---~f~~~~-~~~~~---~~l~~~~v~~i~~D~~  323 (781)
T 3v9f_A          254 GALSSYIFSIK--QLKDN-KLWIATELNGIMILDLQQNQFLLPEQI---RFEFIR-EGDNN---YSLSNASARYIFQDSF  323 (781)
T ss_dssp             --CCCCEEEEE--ECTTS-EEEEEESSSCEEEEETTCC------------CEEEC-BCSST---TSBSSSCEEEEEECSS
T ss_pred             cccCceEEEEE--ECCCC-CEEEEeCCCCeEEECCCCCeeeeeecc---cccccc-CCCCC---CCCCCCeEEEEEEeCC
Confidence              235688776  34554 466666655678888765432211100   000000 00000   0111223444555555


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEc------cC-CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSID------AD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      +. |-.|+.++-|..|+..++.......      .. -....|.++...++|.+. +|+.++-|..|+..++ . ...+.
T Consensus       324 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~~~~-~-~~~~~  399 (781)
T 3v9f_A          324 NN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFENGKR-V-AIYNK  399 (781)
T ss_dssp             CC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEETTEE-E-EECC-
T ss_pred             CC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEECCCC-e-EEEcc
Confidence            54 6667777888899887654332211      00 012357788888887755 4565566888876543 1 11100


Q ss_pred             cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCC
Q 001258          659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  738 (1113)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~  738 (1113)
                      .  .                                                                            
T Consensus       400 ~--~----------------------------------------------------------------------------  401 (781)
T 3v9f_A          400 E--N----------------------------------------------------------------------------  401 (781)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             C--C----------------------------------------------------------------------------
Confidence            0  0                                                                            


Q ss_pred             cceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCC
Q 001258          739 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  818 (1113)
Q Consensus       739 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~  818 (1113)
                              .......|.++...++|...+ ++.++-+..++...                      +........ ....
T Consensus       402 --------~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~----------------------~~~~~~~~~-~~~~  449 (781)
T 3v9f_A          402 --------RELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRL----------------------KKFQIIELE-KNEL  449 (781)
T ss_dssp             ----------CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSS----------------------CEEEECCST-TTCC
T ss_pred             --------CCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCC----------------------CcEEEeccC-CCCC
Confidence                    000235678888888887444 55555566665432                      211111000 0134


Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      ..|.++...++|.+.+... +.|..||..+++........     ...|.++...+ +|++.+ |+.++-+..||..+++
T Consensus       450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGRFWI-GTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCCEEE-EESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCCEEE-EEcCCCEEEEeCCCCe
Confidence            6788999888887665544 67999998876554332222     35688898887 676554 5554558888877655


Q ss_pred             eeeeecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          894 VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       894 ~~~~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ...-...   ....|.++...++|.+.++.. +|.|..||..+++...   .....+-.  ...+.++...++|...+++
T Consensus       527 ~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          527 VRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQV---FQRKEGLP--NTHIRAISEDKNGNIWAST  600 (781)
T ss_dssp             EEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEE---ECGGGTCS--CCCCCEEEECSSSCEEEEC
T ss_pred             EEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEE---ccccCCCC--CceEEEEEECCCCCEEEEc
Confidence            3322111   245789999999988776554 6754888887654321   11112211  1357888889999876665


Q ss_pred             cCCeEEEEeCCccceeeccccCCC-CC--CeeEEEECCCCCEEEEEeCCCcEEEEecC
Q 001258          971 HETQLAIFETTKLECVKQWVPRES-SA--PITHATFSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~h-~~--~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                       .+.|..|+..+.+...--..++- ..  ...++...++|++++ |+.+| +..++..
T Consensus       601 -~~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p~  655 (781)
T 3v9f_A          601 -NTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNPD  655 (781)
T ss_dssp             -SSCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECSC
T ss_pred             -CCceEEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCc-eEEEChh
Confidence             44577888876654322111111 11  235677788887655 55677 4455654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=1.2e-11  Score=131.43  Aligned_cols=233  Identities=12%  Similarity=0.097  Sum_probs=165.1

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC-cceEEEEEcCCCCeEEEEeCCCeEEEEEccC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  451 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~i~iwd~~~  451 (1113)
                      +|++++.++.|.+||.++|+.+.+                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            699999999999999999998754                   22233 4688999999999999  34778999999 7


Q ss_pred             Cceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCceeeEeec------cCcCEEEEeeeecCCc
Q 001258          452 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI  523 (1113)
Q Consensus       452 ~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~------h~~~v~~~~~~~~~~~  523 (1113)
                      |+.+.   .+..+ ...+.++.+.++|+  ++++.+. ++.|..+|. +|+.+..+..      +......++  +..+|
T Consensus        65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G  136 (276)
T 3no2_A           65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG  136 (276)
T ss_dssp             SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred             CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence            77666   34433 34788999999999  6777766 778888884 7888776652      112233333  45677


Q ss_pred             eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258          524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  603 (1113)
Q Consensus       524 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  603 (1113)
                      +++++...++.|.+||.+ ++.+..+.... ...++.                     ..++++.++++..++.|..+|.
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~---------------------~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSA---------------------FLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEE---------------------ECTTSCEEEECBTTSEEEEECT
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-Ccccee---------------------EcCCCCEEEEeCCCCeEEEEeC
Confidence            899999999999999987 77776665532 222333                     3445556777777889999999


Q ss_pred             CCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEECC--------CcEEEEEcCCCccceeccc
Q 001258          604 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       604 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~  658 (1113)
                      .+|+.+..+....    ....+..+...++|+++++....        +..+++.+....+.+-.+.
T Consensus       194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~  260 (276)
T 3no2_A          194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN  260 (276)
T ss_dssp             TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred             cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence            9999998886331    12336678889999998887522        2335666633325544443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=2.3e-11  Score=132.64  Aligned_cols=277  Identities=9%  Similarity=0.055  Sum_probs=184.4

Q ss_pred             EEeCCCceEEEeec-----CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          758 IFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       758 ~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      ...|+++.+++...     ++.+.+.|..                      +++++.....+   ..+  .++++|||++
T Consensus        39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~----------------------t~~v~~~I~vG---~~P--~va~spDG~~   91 (386)
T 3sjl_D           39 APAPDARRVYVNDPAHFAAVTQQFVIDGE----------------------AGRVIGMIDGG---FLP--NPVVADDGSF   91 (386)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETT----------------------TTEEEEEEEEC---SSC--EEEECTTSSC
T ss_pred             ccCCCCCEEEEEcCcccCCCCEEEEEECC----------------------CCeEEEEEECC---CCC--cEEECCCCCE
Confidence            34678887777665     4677776654                      34433322222   222  4999999998


Q ss_pred             EEEEe-----------CCeEEEEECCCCceeeeecCCC-------CCeeEEEEecCCCcEEEEEec--CCcEEEEEcccc
Q 001258          833 VMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVD  892 (1113)
Q Consensus       833 l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~-------~~i~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~  892 (1113)
                      ++++.           ++.|.+||..+++.+.++....       .....++|+| ||++|.++..  ++.|.++|+.++
T Consensus        92 lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~  170 (386)
T 3sjl_D           92 IAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGK  170 (386)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTT
T ss_pred             EEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCC
Confidence            87764           4679999999999888774321       2466799999 8888887764  689999999999


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccccccCCCCCCCCCCC-ceEEE-ccCCcEEEE
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQF-HQDQIHFLV  969 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~-spdg~~l~~  969 (1113)
                      +.+.++.-..  . ...+....+.+++.+.||++.+.++.+ ++..... .....   .....+ ....| .++|+++++
T Consensus       171 ~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~v  243 (386)
T 3sjl_D          171 AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVWP  243 (386)
T ss_dssp             EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEEE
T ss_pred             cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEEE
Confidence            9988885321  1 233434456777888889888888876 3331111 01110   000122 22455 478988888


Q ss_pred             EcCCeEEEEeCCccc--eeeccc--------cCCCCCCeeEEEECCCCCEEEEEeC----------CCcEEEEecCCCce
Q 001258          970 VHETQLAIFETTKLE--CVKQWV--------PRESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLKL 1029 (1113)
Q Consensus       970 ~~d~~v~v~d~~~~~--~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~----------Dg~v~vwd~~~~~~ 1029 (1113)
                      +.++.+.+.|..+..  .+..+.        .+-....+..++++++++.++....          .+.|.+.|+.+++.
T Consensus       244 s~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv  323 (386)
T 3sjl_D          244 TYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  323 (386)
T ss_dssp             BTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             eCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE
Confidence            888999999997654  333322        0001234456888999999888753          25799999999999


Q ss_pred             eeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEE-eCCCcEEEEeccCCC
Q 001258         1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALG-LSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~-~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.++..      +  ..++  .+.+++ |++ +|+++ ..+++|.++|..+++
T Consensus       324 ~~~i~v------g--~~~~--~lavs~-D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          324 LAKFEM------G--HEID--SINVSQ-DEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             EEEEEE------E--EEEC--EEEECS-SSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEC------C--CCcc--eEEECC-CCCeEEEEEcCCCCeEEEEECCCCc
Confidence            988762      2  1233  488888 555 66554 558999999999988

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=5.1e-11  Score=132.58  Aligned_cols=204  Identities=12%  Similarity=0.098  Sum_probs=143.7

Q ss_pred             ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...++++|||++++++.   ++.|.++|+.+++.+.++....    +....|.+.+.+++.+.||.+.+.+..+++....
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence            45678999999988875   4789999999999888876422    1334453446667777888888888866655422


Q ss_pred             ----ecccccCe-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEEccCCcE
Q 001258          898 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIH  966 (1113)
Q Consensus       898 ----l~~h~~~V-~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~spdg~~  966 (1113)
                          +.....++ ..+.|++++..++..+..+.|.+.|+..............      .+..+  .....++++||+++
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p--~g~~~va~s~dg~r  332 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRP--GGWQQTAYHRQSDR  332 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEE--CSSSCEEEEGGGTE
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccccc--CCceeeEEcCCCCE
Confidence                21111221 2356799998888888889999999866432111111110      00000  12345799999998


Q ss_pred             EEEEc-----------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC-EEEEEe-CCCcEEEEecCCCceeeec
Q 001258          967 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       967 l~~~~-----------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +++..           .+.|.++|..+.+.+..+..   ......++|+|||+ +++++. .++.|.|+|+.+++.+.++
T Consensus       333 lyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v---g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          333 IYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL---GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEEEecccccccccCCCCEEEEEECCCCeEEEEEEC---CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            87742           24799999999999998875   23689999999999 888888 5899999999999999886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.39  E-value=3.8e-10  Score=125.48  Aligned_cols=268  Identities=11%  Similarity=0.018  Sum_probs=167.0

Q ss_pred             ceeEeccCCCCcEEEEEcCCCCeEEEEEe---------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCC
Q 001258          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGT---------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG  420 (1113)
Q Consensus       350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  420 (1113)
                      ++...+.-...- .++|||||+++.++..         .++.|.+||..+.+.+....+.     .     .....  +.
T Consensus        58 ~~~~~i~~g~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~-----~-----~~~~~--~g  124 (373)
T 2mad_H           58 SILGHVNGGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELP-----D-----APRFD--VG  124 (373)
T ss_pred             eEEEEecCCCCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECC-----C-----ccccc--cC
Confidence            344455533334 9999999998555542         3678999999988776532110     0     00000  11


Q ss_pred             cceEEEEEcCCCCeEEEEeC--CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          421 VSVNRVIWSPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       421 ~~V~~l~~spdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      ..-..++|||||++|+++..  ++.|.++| .+++.+...  +. ..   .++.+.|+++. .+++.+.|+.+.+||. +
T Consensus       125 ~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~--i~-~~---~~~~~~~~~~~-~~~~~~~dg~~~~vd~-~  195 (373)
T 2mad_H          125 PYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQL--LS-SP---TCYHIHPGAPS-TFYLLCAQGGLAKTDH-A  195 (373)
T ss_pred             CCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEE--cC-CC---ceEEEEeCCCc-eEEEEcCCCCEEEEEC-C
Confidence            23458999999999999874  57899999 998765420  21 11   13566677765 5677778999999999 8


Q ss_pred             CceeeEee-----ccCcCE-EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCee--eeeCCCCceEEEEEccCCCeEEe
Q 001258          499 GAKQYIFE-----GHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       499 ~~~~~~~~-----~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      ++.+....     ....++ ....+.... +.+++. +..+.+.+.|+.......  .+...........|.|.+     
T Consensus       196 g~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g-----  268 (373)
T 2mad_H          196 GGAAGAGLVGAMLTAAQNLLTQPAQANKS-GRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGG-----  268 (373)
T ss_pred             CcEEEEEeccccccCCcceeecceeEecC-CEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCc-----
Confidence            87763322     111121 112222322 233333 367889999987543221  111111111122333333     


Q ss_pred             ccccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC-EEEEEE-C
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST-N  638 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~  638 (1113)
                            ...+.++|+++.+++...          .+.|.++|..+++.+..+....   ...+++|+|||+ +++++. .
T Consensus       269 ------~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~  339 (373)
T 2mad_H          269 ------WQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH---DVDAISVAQDGGPDLYALSAG  339 (373)
T ss_pred             ------eEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC---CcCeEEECCCCCeEEEEEcCC
Confidence                  233567777777777543          3689999999999999886543   368999999999 777776 5


Q ss_pred             CCcEEEEEcCCCccceec
Q 001258          639 DNGIKILATSDGIRLLRT  656 (1113)
Q Consensus       639 dg~i~iwd~~~~~~~~~~  656 (1113)
                      ++.|.++|..++ +.+..
T Consensus       340 ~~~V~ViD~~t~-~vv~~  356 (373)
T 2mad_H          340 TEVLHIYDAGAG-DQDQS  356 (373)
T ss_pred             CCeEEEEECCCC-CEEee
Confidence            899999999988 44443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.35  E-value=2.2e-11  Score=150.26  Aligned_cols=245  Identities=9%  Similarity=-0.016  Sum_probs=153.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      |...+..++|||||++|+++.+.+|    +|++||+.+|+.+.. .                   .+...+..++|||| 
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~-------------------~~~~~~~~~~wspD-  219 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-E-------------------LKWVKFSGLAWLGN-  219 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-E-------------------EEEEESCCCEESTT-
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-c-------------------CCCceeccEEEECC-
Confidence            3346889999999997544444334    599999999987542 0                   01112357899999 


Q ss_pred             CeEEEEeCCCe--------------EEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecC-----CCcEE
Q 001258          433 SLFGVAYSRHI--------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKTIK  492 (1113)
Q Consensus       433 ~~las~~~d~~--------------i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~-----d~~i~  492 (1113)
                      +.|+.++.++.              |.+|++.++... ..+.....|...+..+.|||||+.  |+..+.     ...|+
T Consensus       220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~  297 (741)
T 1yr2_A          220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH  297 (741)
T ss_dssp             SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred             CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence            99998876654              889999877532 111122234446899999999995  444443     34899


Q ss_pred             EEeCCCC--ceeeEeeccCcCEEEEeeeecCCceEEEEEec----CCcEEEEEcCCCC-Ceee-eeCCCCceEEEEEccC
Q 001258          493 VWDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL----DGKIKAWLYDNLG-SRVD-YEAPGRWCTTMAYSAD  564 (1113)
Q Consensus       493 iwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~-~~~~~~~v~~~~~s~~  564 (1113)
                      +||+.++  ++...+..+...+.... .+  +|..|+..+.    ++.|.+||+.+.. .... +..+...+..++++  
T Consensus       298 ~~d~~~~~~~~~~~l~~~~~~~~~~~-~~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~--  372 (741)
T 1yr2_A          298 VARVTNGKIGPVTALIPDLKAQWDFV-DG--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA--  372 (741)
T ss_dssp             EEEEETTEECCCEEEECSSSSCEEEE-EE--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE--
T ss_pred             EEECCCCCCcccEEecCCCCceEEEE-ec--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE--
Confidence            9999887  42556665655555443 23  4456666654    3459999987642 2222 22222223333332  


Q ss_pred             CCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECC-CCceEEEEccCCCCCCcCeEEECCCCCEEEEEE----CC
Q 001258          565 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST----ND  639 (1113)
Q Consensus       565 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~d  639 (1113)
                                          ++..+++...++..++|.+. +++....+..+. ...+..++++|+++.++...    ..
T Consensus       373 --------------------~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P  431 (741)
T 1yr2_A          373 --------------------GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQP  431 (741)
T ss_dssp             --------------------BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEE
T ss_pred             --------------------CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCC
Confidence                                22356777788887777554 455666665432 23577889999987665332    24


Q ss_pred             CcEEEEEcCCC
Q 001258          640 NGIKILATSDG  650 (1113)
Q Consensus       640 g~i~iwd~~~~  650 (1113)
                      ++|++||+.++
T Consensus       432 ~~i~~~d~~tg  442 (741)
T 1yr2_A          432 ATVLALDPATA  442 (741)
T ss_dssp             EEEEEEETTTT
T ss_pred             CEEEEEECCCC
Confidence            68999999877

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.34  E-value=2.8e-09  Score=115.55  Aligned_cols=278  Identities=9%  Similarity=0.050  Sum_probs=185.8

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ....+.+++++++|+.+++...++.|.+|+.. ...                      .......  ....+.+++++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~----------------------~~~~~~~--~~~~~~~i~~~~~   72 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI----------------------KEFEVPT--PDAKVMCLIVSSL   72 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE----------------------EEEECSS--TTCCEEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce----------------------EEEECCC--CCCcceeEEECCC
Confidence            34578899999999977776677888888654 111                      1110111  3356889999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceee-eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee-eecccccCeE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT  906 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~  906 (1113)
                      |++.++.. ++.|..||.. ++... ........+..+++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            99777766 6889999987 55432 2232346689999998 78888777668899999987 55442 2333456789


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  985 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~  985 (1113)
                      ++++.++++++++...++.|..|+. +++...   .... ..   ...+..++++++|..+++. ..+.|.+|+. +++.
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence            9999999997777777788999998 433221   1111 11   1256889999999877775 4568999998 5554


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEE
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      ..... ..+...+.+++++++|++.++...++.|..|+. +++.. .+.    .+ .....+..  ++..+ +|++.++.
T Consensus       221 ~~~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~-~~~~~~~~--i~~~~-~g~l~v~~  289 (300)
T 2qc5_A          221 SEYDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQ-TENAEPHG--ITFGK-DGSVWFAL  289 (300)
T ss_dssp             EEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CC-STTCCCCC--EEECT-TSCEEEEC
T ss_pred             EEEEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CC-ccCCccce--eEeCC-CCCEEEEc
Confidence            33222 234567899999999997776666789999998 45443 222    11 12233443  66667 67766655


Q ss_pred             eCCCcEEEEecc
Q 001258         1066 LSDGGVHVFEPL 1077 (1113)
Q Consensus      1066 ~~Dg~v~vW~~~ 1077 (1113)
                      . . .|..+++.
T Consensus       290 ~-~-~i~~~~p~  299 (300)
T 2qc5_A          290 K-C-KIGKLNLN  299 (300)
T ss_dssp             S-S-EEEEEEEC
T ss_pred             c-C-ceEEeCCC
Confidence            4 4 67777653

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=3.9e-10  Score=123.35  Aligned_cols=235  Identities=13%  Similarity=0.124  Sum_probs=160.0

Q ss_pred             CCccEEEEecCCCEEEE-------E-eCCeEEEEECCCCceeeeec----CCCCCeeEEEEecCC-CcEEEEEecCCcEE
Q 001258          819 EAVPCFALSKNDSYVMS-------A-SGGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQD-NNIIAIGMDDSSIQ  885 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~-------~-sdg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d-~~~la~g~~dg~v~  885 (1113)
                      ....+++|+++|+++++       + .++.|.+||..+++......    ++...+..+++++ + ++++++.. .+.|.
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~   95 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL   95 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence            45678999999988877       3 37899999988776543222    2445689999999 6 76555443 45799


Q ss_pred             EEEcccceeeee-ecc----cccCeEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCccccccccccC
Q 001258          886 IYNVRVDEVKSK-LKG----HSKRITGLAFSHALNVLVSSGAD---------------SQLCVWSSDGWEKQKNRFLQIP  945 (1113)
Q Consensus       886 iwd~~~~~~~~~-l~~----h~~~V~~l~~s~d~~~L~s~s~D---------------~~v~iwd~~~~~~~~~~~~~~~  945 (1113)
                      +||.. ++.... ...    +...+.+++++++|+++++...+               +.|..|+.+ ++...  .....
T Consensus        96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~--~~~~~  171 (314)
T 1pjx_A           96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ--VDTAF  171 (314)
T ss_dssp             EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE--EEEEE
T ss_pred             EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE--eccCC
Confidence            99988 665433 221    22458899999999988887665               456666654 32211  11100


Q ss_pred             CCCCCCCCCCceEEEc----cCCcEEEEE--cCCeEEEEeCC-ccce-----eeccccCCCC-CCeeEEEECCCCCEEEE
Q 001258          946 TGRTPTAQSDTRVQFH----QDQIHFLVV--HETQLAIFETT-KLEC-----VKQWVPRESS-APITHATFSCDSQLVYA 1012 (1113)
Q Consensus       946 ~~~~~~~~~i~~~~~s----pdg~~l~~~--~d~~v~v~d~~-~~~~-----~~~~~~~~h~-~~v~~l~~s~dg~~l~s 1012 (1113)
                             .....++++    |+|+.++++  .++.|.+|+.. +++.     ...+  ..+. ..+..++++++|.++++
T Consensus       172 -------~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~~~~p~~i~~d~~G~l~v~  242 (314)
T 1pjx_A          172 -------QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI--PGTHEGGADGMDFDEDNNLLVA  242 (314)
T ss_dssp             -------SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC--CCCSSCEEEEEEEBTTCCEEEE
T ss_pred             -------CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC--CCCCCCCCCceEECCCCCEEEE
Confidence                   134688999    999776653  56899999976 3432     2222  1333 56889999999998888


Q ss_pred             EeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEeCCCcEEEEeccC
Q 001258         1013 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1013 ~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ...++.|.+||..+++....+.       .+...+.  .++|+| +++ ++++...++.|..|++..
T Consensus       243 ~~~~~~i~~~d~~~g~~~~~~~-------~~~~~~~--~i~~~~-dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          243 NWGSSHIEVFGPDGGQPKMRIR-------CPFEKPS--NLHFKP-QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EETTTEEEEECTTCBSCSEEEE-------CSSSCEE--EEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred             EcCCCEEEEEcCCCCcEeEEEe-------CCCCCce--eEEECC-CCCEEEEEeCCCCeEEEEeCCC
Confidence            8788999999998777665554       2223333  577777 677 455555678999999875

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.33  E-value=3.7e-09  Score=114.59  Aligned_cols=238  Identities=11%  Similarity=0.009  Sum_probs=160.0

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ....+.++++.++|+ +.++...++.|.+||.. ++....                  .+..+...+.+++++++|++++
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence            456889999999998 56666678999999987 543321                  1122345789999999999888


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee-EeeccCcCEEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV  515 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~h~~~v~~~  515 (1113)
                      +...++.|..||.. ++...  ..+......+.++++.++|.  ++++...++.|..||.. ++... .+......+..+
T Consensus        78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            77778889999988 54321  12333446799999999998  67777768899999977 65442 223344567778


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee--CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  593 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  593 (1113)
                      ++.  +++.+.++...++.|..||. ++.. ..+.  .....+.                     .++++++++.+++..
T Consensus       152 ~~d--~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~~~~~~~---------------------~i~~d~~g~l~v~~~  206 (300)
T 2qc5_A          152 TLG--SDNALWFTENQNNSIGRITN-TGKL-EEYPLPTNAAAPV---------------------GITSGNDGALWFVEI  206 (300)
T ss_dssp             EEC--TTSSEEEEETTTTEEEEECT-TCCE-EEEECSSTTCCEE---------------------EEEECTTSSEEEEET
T ss_pred             EEC--CCCCEEEEecCCCeEEEECC-CCcE-EEeeCCCCCCCcc---------------------eEEECCCCCEEEEcc
Confidence            754  45566666666788999987 3222 2221  1122233                     445555554555555


Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                      ..+.|.+|+. +++.... ........+.++++.++|+++++...++.|..|+.
T Consensus       207 ~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            6678999998 5554432 22222345788999999997777666788988886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.33  E-value=4.2e-10  Score=123.10  Aligned_cols=256  Identities=13%  Similarity=0.097  Sum_probs=159.8

Q ss_pred             cCCCCcEEEEEcCCCCeEEEE-------EecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          356 NQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~-------gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      ..-....+++|+++|+ ++++       ++.++.|.+||..+++..... .              ....++...+.++++
T Consensus        15 ~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--------------~~~~~~~~~~~~i~~   78 (314)
T 1pjx_A           15 EDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K--------------PEVNGYGGIPAGCQC   78 (314)
T ss_dssp             CCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C--------------CEETTEECCEEEEEE
T ss_pred             ccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e--------------cccCCCCCCCceEEE
Confidence            3455678999999998 5666       567899999998887653210 0              001234457999999


Q ss_pred             cCC-CCeEEEEeCCCeEEEEEccCCceeee-eeeee-cccCCeeEEEEcCCCCeeEEEEecCC---------------Cc
Q 001258          429 SPD-GSLFGVAYSRHIVQIYSYHGGDEVRQ-HLEID-AHVGGVNDIAFSHPNKQLCVITCGDD---------------KT  490 (1113)
Q Consensus       429 spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d---------------~~  490 (1113)
                      +++ |+++++.. .+.|.+||.. ++.... ..... .+...+.+++++++|+  ++++...+               +.
T Consensus        79 ~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~  154 (314)
T 1pjx_A           79 DRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGS  154 (314)
T ss_dssp             CSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred             ecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCe
Confidence            999 76555554 4469999988 654321 10001 1224589999999998  55665544               56


Q ss_pred             EEEEeCCCCceeeEeeccCcCEEEEeee--ecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCe
Q 001258          491 IKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  567 (1113)
Q Consensus       491 i~iwd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  567 (1113)
                      |..||.. ++... +..+......++++  .++++..+ ++...++.|.+||+.........       ..+.-.+.   
T Consensus       155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~~~~---  222 (314)
T 1pjx_A          155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGHIPG---  222 (314)
T ss_dssp             EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEECCC---
T ss_pred             EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEECCC---
Confidence            7777765 55433 33344456777765  11455555 44456889999997621111000       00000000   


Q ss_pred             EEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEE-ECCCcEEEEE
Q 001258          568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILA  646 (1113)
Q Consensus       568 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd  646 (1113)
                          +.......++++++++.+++...++.|.+||..+++.+..+..+.  ..+.+++|+++++.|+++ ..++.|..|+
T Consensus       223 ----~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          223 ----THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             ----CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ----CCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence                000123446666777667777778999999998787777665442  457899999999955544 4567899998


Q ss_pred             cCC
Q 001258          647 TSD  649 (1113)
Q Consensus       647 ~~~  649 (1113)
                      +..
T Consensus       297 ~~~  299 (314)
T 1pjx_A          297 WQR  299 (314)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            764

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.32  E-value=9.1e-11  Score=144.74  Aligned_cols=281  Identities=11%  Similarity=0.056  Sum_probs=170.6

Q ss_pred             CCCcceeeccCCC---ceeeEeccCCC-CCCcceec-cc--CcccccCceEEEEEeCCCceEEEeecC-----CeEEEEE
Q 001258          712 ADVKPRITEESND---KSKVWKLTELS-EPNQCRSL-RL--PENLRATKISRLIFTNSGNAILALASN-----AIHLLWK  779 (1113)
Q Consensus       712 ~~~~~l~~~~~d~---~i~iw~~~~~~-~~~~~~~~-~~--~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~i~vw~  779 (1113)
                      +++..++....++   ...+|...... .......+ ..  ...++...+..++|||||+.|+.+..+     ..|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            6677766554443   35667665320 00111111 11  011233468899999999998877654     3577776


Q ss_pred             ccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CC--------------eEEEE
Q 001258          780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISLF  844 (1113)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg--------------~i~vw  844 (1113)
                      +.                      +|..+....    +...+..++|+|| +.|+.++ ++              .|++|
T Consensus       196 l~----------------------tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~  248 (741)
T 1yr2_A          196 VA----------------------DGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLH  248 (741)
T ss_dssp             TT----------------------TCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEE
T ss_pred             CC----------------------CCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEE
Confidence            65                      333322111    1112357899999 9888876 43              38999


Q ss_pred             ECCCCce--eeeec--CCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccc--eeeeeecccccCeEEEEEcCC
Q 001258          845 NMMTFKT--MATFM--PPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSHA  913 (1113)
Q Consensus       845 d~~~~~~--~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~d  913 (1113)
                      ++.++..  ...+.  .+...+..+.||| ||++|+..+.++     .|++||+.++  +....+..+...+.... +|+
T Consensus       249 ~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~d  326 (741)
T 1yr2_A          249 RLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGV  326 (741)
T ss_dssp             ETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEE
T ss_pred             ECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ecc
Confidence            9977652  22333  2333588999999 898888877554     8999999876  32556666666666554 489


Q ss_pred             CCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCC-ccceee
Q 001258          914 LNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECVK  987 (1113)
Q Consensus       914 ~~~L~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~-~~~~~~  987 (1113)
                      |+.|+..+.+    +.|.+||+.++. ..  .......+.   ..+..+.++ ++..+++ ..++..+||.+. +++...
T Consensus       327 g~~l~~~s~~~~~~~~l~~~d~~~~~-~~--~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          327 GDQLWFVSGDGAPLKKIVRVDLSGST-PR--FDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             TTEEEEEECTTCTTCEEEEEECSSSS-CE--EEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             CCEEEEEECCCCCCCEEEEEeCCCCc-cc--cEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence            9988887764    449999988742 11  111122221   234566666 4444455 477776666443 355555


Q ss_pred             ccccCCCCCCeeEEEECCCCCEEEEEe----CCCcEEEEecCCCce
Q 001258          988 QWVPRESSAPITHATFSCDSQLVYACF----LDATVCVFSAANLKL 1029 (1113)
Q Consensus       988 ~~~~~~h~~~v~~l~~s~dg~~l~s~~----~Dg~v~vwd~~~~~~ 1029 (1113)
                      .+.. .+...+..+.++||++.|+...    ..++|++||+.+++.
T Consensus       400 ~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          400 AVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             ECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            4442 2356789999999998666332    347899999998874

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.27  E-value=8.7e-10  Score=122.71  Aligned_cols=257  Identities=12%  Similarity=0.116  Sum_probs=166.5

Q ss_pred             CCCCeEEEEEecC----CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe----
Q 001258          368 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----  439 (1113)
Q Consensus       368 pdg~~ll~~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----  439 (1113)
                      |++++++++...+    +.|.+.|..+++.+.+..                  .+. .+  .+++||||++|.++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG~-~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GGF-LP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------ECS-SC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CCC-CC--ceEECCCCCEEEEEecccc
Confidence            5677666665544    799999999999886522                  122 24  799999999998876    


Q ss_pred             ------CCCeEEEEEccCCceeeeeeeee--c---ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCceeeEee
Q 001258          440 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       440 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd~~~~~~~~~~~  506 (1113)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||++  ++.+.  .+++|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  46789999999998766432 21  0   1234568999999995  44443  36899999999999988876


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee----eeCCCCc-eEEEEEccCCCeEEecc---------
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD----YEAPGRW-CTTMAYSADGTRTYQGF---------  572 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-v~~~~~s~~~~~~~~~~---------  572 (1113)
                      --..    ....+... ..+++.+.||.+.+.+..+.+....    +.....+ ...+.+.+++..++...         
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            3221    11223222 3555666777777777743332211    1111111 01122333333211100         


Q ss_pred             ------------------------ccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCCC
Q 001258          573 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL  618 (1113)
Q Consensus       573 ------------------------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~  618 (1113)
                                              .......++++++++++++...          ++.|.++|..+++.+..+....  
T Consensus       293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--  370 (426)
T 3c75_H          293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--  370 (426)
T ss_dssp             ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred             ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence                                    0011122688899888777642          3579999999999999886543  


Q ss_pred             CCcCeEEECCCCC-EEEEEE-CCCcEEEEEcCCCccceecc
Q 001258          619 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       619 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~  657 (1113)
                       ....+.|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus       371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI  409 (426)
T 3c75_H          371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV  409 (426)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred             -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence             368999999999 888887 5899999999998 455443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.26  E-value=2.1e-09  Score=121.32  Aligned_cols=256  Identities=11%  Similarity=0.035  Sum_probs=164.2

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      ...+.|+|+++|+ |+++...++.|++||..+++....                   ... ..... ++|+|++++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4689999999998 688877789999999988765431                   111 12233 9999999999988


Q ss_pred             eCCC--eEEEEEccCCceeeeeeeeec-ccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE----eeccCcC
Q 001258          439 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP  511 (1113)
Q Consensus       439 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~----~~~h~~~  511 (1113)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8765  799999887654332212222 5567899999996553  33466688999999887764322    2222222


Q ss_pred             E--EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          512 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       512 v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      -  ..++|++. ++.++++...++.|+.|+....  ...+...... ..   ..+|  ......-.....++++++++.+
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~-~g---~~dg--~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQ-KT---VQDG--LREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTC-CS---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCC-CC---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence            2  27787653 3467777777889999987642  2222211100 00   0000  0000001234567788888877


Q ss_pred             EEEe-cCCcEEEEECCCCceEEEEccCC------------CCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          590 LAAG-DDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       590 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                      ++-. .++.|+.|++.++..........            .......+++++++.++++-..++.|+.+++
T Consensus       338 vad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7777 78999999987776443332100            1234678999999888888888888887764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.26  E-value=1.1e-09  Score=118.86  Aligned_cols=239  Identities=12%  Similarity=0.061  Sum_probs=154.8

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      .+..+.......+|+|+|++|++++..++.|..|+. +++...                    +..+...+..++++++|
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG   97 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQ   97 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTS
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCC
Confidence            444466677899999999988899888999999998 444221                    22345578999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEE----ecC-------------CCcEEEE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW  494 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s----~s~-------------d~~i~iw  494 (1113)
                      +++++...++.|.+|+.. ++.........+. ...++++++.++|+  +.++    |..             .+.|..|
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence            977766666889999986 5422211111111 23578899999998  5665    332             2567888


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecC------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeE
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      |..+++.....  .......++|++  ++..|+.+...      +.|.+|++.... ....                 ..
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~  232 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH  232 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred             cCCCCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence            87677654433  445567788754  55666666554      689999887533 1100                 00


Q ss_pred             EeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  643 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  643 (1113)
                      +..........++++++|+ |.++..+ .|.+|+. +++.+..+....   .+.+++|+++++.|.+++.++..+
T Consensus       233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            0000011223356667776 4444444 5999998 577777776543   378999999999888888764333

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.25  E-value=1.8e-05  Score=93.75  Aligned_cols=525  Identities=11%  Similarity=0.039  Sum_probs=276.6

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE-eCCCeEEEEEccC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG  451 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~i~iwd~~~  451 (1113)
                      ||++  ..+.|+.-++.+.+....                  +....-..+..|+|++++..|..+ ..++.|..+++..
T Consensus         9 Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g   68 (628)
T 4a0p_A            9 LLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG   68 (628)
T ss_dssp             EEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence            4443  467888888876543221                  111123468899999976666554 4578899999876


Q ss_pred             CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEE-e
Q 001258          452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-A  530 (1113)
Q Consensus       452 ~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-~  530 (1113)
                      .....   .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.+. +|.+.++- +
T Consensus        69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g  143 (628)
T 4a0p_A           69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG  143 (628)
T ss_dssp             CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred             CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence            54222   12222345778999887775 4556666788999997644332222233455678887653 33444443 2


Q ss_pred             cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCceE
Q 001258          531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLL  609 (1113)
Q Consensus       531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~  609 (1113)
                      ..+.|...+++........ ........+++.+                     ++..|+.+ ...+.|..+|++.... 
T Consensus       144 ~~~~I~r~~~dG~~~~~l~-~~~~~P~GlalD~---------------------~~~~LY~aD~~~~~I~~~d~dG~~~-  200 (628)
T 4a0p_A          144 GKPKIDRAAMDGSERTTLV-PNVGRANGLTIDY---------------------AKRRLYWTDLDTNLIESSNMLGLNR-  200 (628)
T ss_dssp             SSCEEEEEETTSCSCEEEE-CSCSSEEEEEEET---------------------TTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CCCEEEEEeCCCCceEEEE-CCCCCcceEEEcc---------------------ccCEEEEEECCCCEEEEEcCCCCce-
Confidence            2456666666543322221 2223344444444                     43345554 3567888888865443 


Q ss_pred             EEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccc
Q 001258          610 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  689 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1113)
                      ..+...  ......+++.. +.+.++-...+.|...|..++.. ...+.......                         
T Consensus       201 ~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~~~~p-------------------------  251 (628)
T 4a0p_A          201 EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGHLDYV-------------------------  251 (628)
T ss_dssp             EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECSCCSC-------------------------
T ss_pred             EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecCCCCc-------------------------
Confidence            233221  22345677764 44444544577888888776632 22221110000                         


Q ss_pred             ccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEe-CCCceEEE
Q 001258          690 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILA  768 (1113)
Q Consensus       690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~~l~~  768 (1113)
                                                        ..|.++.-........|..       .......+++. |.+. ..+
T Consensus       252 ----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~-~~C  289 (628)
T 4a0p_A          252 ----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGG-FVC  289 (628)
T ss_dssp             ----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTE-EEE
T ss_pred             ----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCC-eeE
Confidence                                              0111111110000001100       00011112221 2122 122


Q ss_pred             eecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCC
Q 001258          769 LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMT  848 (1113)
Q Consensus       769 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~  848 (1113)
                      .+..|...                                        .....+|..   ...+|+.+....|+-..+..
T Consensus       290 ~C~~g~~l----------------------------------------~~d~~~C~~---~~~~Ll~s~~~~i~~i~l~~  326 (628)
T 4a0p_A          290 GCPAHYSL----------------------------------------NADNRTCSA---PTTFLLFSQKSAINRMVIDE  326 (628)
T ss_dssp             ECSTTCEE----------------------------------------CTTSSCEEC---CSSEEEEEETTEEEEECCCT
T ss_pred             EcCCCcEe----------------------------------------cccCCcCcc---ccceeeeeccceEEEEeccc
Confidence            22222110                                        111223322   34577777777787777654


Q ss_pred             Ccee-eeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc------cccCeEEEEEcCCCCEE-EE
Q 001258          849 FKTM-ATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-VS  919 (1113)
Q Consensus       849 ~~~~-~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~L-~s  919 (1113)
                      .... ..+. .....+..++|.+.++.++.+=...+.|+.++.........+..      ....+.+|++...++.| ++
T Consensus       327 ~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~t  406 (628)
T 4a0p_A          327 QQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWT  406 (628)
T ss_dssp             TCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEE
T ss_pred             ccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEE
Confidence            3211 1222 12345889999985555555444567888888764332223322      23468899999876655 45


Q ss_pred             EeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc-CCcEEEE-EcCC--eEEEEeCCccceeeccccCCCC
Q 001258          920 SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRESS  995 (1113)
Q Consensus       920 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~-~~d~--~v~v~d~~~~~~~~~~~~~~h~  995 (1113)
                      -+..+.|.+.+++.... . ....   ...   .....+++.| .|.++.+ ....  .|...+++.... ..+.. ..-
T Consensus       407 d~~~~~I~v~~~~G~~~-~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~l  476 (628)
T 4a0p_A          407 CEATNVINVTRLDGRSV-G-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SGL  476 (628)
T ss_dssp             ETTTTEEEEEETTSCEE-E-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SSC
T ss_pred             cCCCCEEEEEECCCCeE-E-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-ccC
Confidence            56678899999875321 1 1111   111   2468999999 5555555 2333  677777754332 22221 124


Q ss_pred             CCeeEEEECCCCCEEEEEeC-CCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258          996 APITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus       996 ~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
                      .....|++++++..|+.+.. .+.|...+++... ...+..      +.-..  +..++..  ++.++.+-...+.|...
T Consensus       477 ~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~-r~~~~~------~~~~~--P~glav~--~~~ly~tD~~~~~i~~~  545 (628)
T 4a0p_A          477 SKPIALALDSRLGKLFWADSDLRRIESSDLSGAN-RIVLED------SNILQ--PVGLTVF--ENWLYWIDKQQQMIEKI  545 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC------SSCSC--EEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             CCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCc-eEEEEc------CCCCC--cEEEEEE--CCEEEEEECCCCeEEEE
Confidence            46789999998877776654 5789999986543 333320      11122  3335544  34555665566788888


Q ss_pred             eccCCC
Q 001258         1075 EPLESE 1080 (1113)
Q Consensus      1075 ~~~~~~ 1080 (1113)
                      +..+|+
T Consensus       546 ~k~~G~  551 (628)
T 4a0p_A          546 DMTGRE  551 (628)
T ss_dssp             ETTSSS
T ss_pred             ECcCCC
Confidence            888777

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.24  E-value=1.8e-09  Score=121.83  Aligned_cols=249  Identities=9%  Similarity=-0.006  Sum_probs=161.3

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC--cEEEEEcccceee
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  895 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~  895 (1113)
                      ..+..++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++  .|.+|+..++...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            3578899999999666665 68999999988776555443 22334 99999 788888887766  7999988765543


Q ss_pred             eee----cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCc-eEEEccCCcEEE-E
Q 001258          896 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQDQIHFL-V  969 (1113)
Q Consensus       896 ~~l----~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~spdg~~l~-~  969 (1113)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++......... ..+...  .... .++|+|++..|+ +
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence            333    225567889999995555555777889999999875421110000 111111  1113 899999644444 4


Q ss_pred             -EcCCeEEEEeCCccceeeccccCC-------------CCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecC
Q 001258          970 -VHETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       970 -~~d~~v~v~d~~~~~~~~~~~~~~-------------h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                       ..++.|+.|+....  +..+....             .-.....++++++|+++++-. .++.|+.|++.++.......
T Consensus       285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred             eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence             35678999987643  22221100             023578999999999777777 78999999988887543322


Q ss_pred             CCcc--cCCCc---ccCccceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258         1035 PSAY--LPAGV---SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1035 ~~~~--~~~gh---~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
                      ....  ...|.   ..--.|-.+++.| +|+++++-..++.|+.+++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence            1000  00010   0012355688888 5788888888888888775

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.23  E-value=2.9e-09  Score=115.11  Aligned_cols=234  Identities=11%  Similarity=0.073  Sum_probs=150.5

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      .-..+..|+|++..|+++...++.|..||..+++....                     .+...+.+++++++|+++++.
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~~   71 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVATI   71 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEEE
Confidence            34568999998777888888899999999988764221                     123579999999999965553


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeec--ccCCeeEEEEcCCCCeeEEEEe-cC--------CCcEEEEeCCCCceeeEeec
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITC-GD--------DKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~~~~~~~l~s~-s~--------d~~i~iwd~~~~~~~~~~~~  507 (1113)
                        ++.|.+||..+++.. .+.....  ....+++++++|+|+  ++++. +.        .....||.+.....+..+..
T Consensus        72 --~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~  146 (297)
T 3g4e_A           72 --GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD  146 (297)
T ss_dssp             --TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE
T ss_pred             --CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEEEee
Confidence              567999999887643 2212111  123588999999998  44443 22        13345555543222333333


Q ss_pred             cCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcC--CCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          508 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      +....+.++|++  +++.+ ++.+.++.|..|++.  ++. ....        .+....       .........+++++
T Consensus       147 ~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~-~~~~--------~~~~~~-------~~~~~~p~g~~~d~  208 (297)
T 3g4e_A          147 QVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQ-ISNR--------RSVYKL-------EKEEQIPDGMCIDA  208 (297)
T ss_dssp             EESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCC-EEEE--------EEEEEC-------CGGGCEEEEEEEBT
T ss_pred             ccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCc-ccCc--------EEEEEC-------CCCCCCCCeeEECC
Confidence            445567888765  44544 566678899999874  222 1100        000000       00012334566677


Q ss_pred             CCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEEC
Q 001258          585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN  638 (1113)
Q Consensus       585 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  638 (1113)
                      +|+..++....+.|.+||..+++.+..+..+.  ..+++++|. |+++.|++++.
T Consensus       209 ~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          209 EGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEB
T ss_pred             CCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcC
Confidence            77667777778889999999899988887653  368899998 88887776654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.23  E-value=4.4e-10  Score=123.15  Aligned_cols=197  Identities=9%  Similarity=-0.012  Sum_probs=129.8

Q ss_pred             ccEEEEecCCCEEEEEe---CCeEEE--EECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----
Q 001258          821 VPCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----  891 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----  891 (1113)
                      ...++++|||++++++.   ++.+.+  +|+.+   +..+....  .  ..+.|++.+.+++.+.||.+.+.|+.+    
T Consensus       126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~  198 (368)
T 1mda_H          126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAA  198 (368)
T ss_dssp             TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred             cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence            45688999999888875   356888  88877   34443211  1  223453455666777899998899887    


Q ss_pred             -ceeeee----ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccC------CCCCCCCCCCceEEE
Q 001258          892 -DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQF  960 (1113)
Q Consensus       892 -~~~~~~----l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~------~~~~~~~~~i~~~~~  960 (1113)
                       ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+...      .+..+  .....+++
T Consensus       199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~  271 (368)
T 1mda_H          199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAK  271 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEE
T ss_pred             CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEE
Confidence             544321    11122333   3 566676666666 8999999875321111111110      00000  12234789


Q ss_pred             ccCCcEEEEE-c-C--------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE-EEEEe-CCCcEEEEecCCCc
Q 001258          961 HQDQIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLK 1028 (1113)
Q Consensus       961 spdg~~l~~~-~-d--------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l~s~~-~Dg~v~vwd~~~~~ 1028 (1113)
                      +||+++++++ . .        +.+.++|+.+++.+..+..+   .....++|+|||++ +++.. .++.|.|+|+.+++
T Consensus       272 s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k  348 (368)
T 1mda_H          272 LKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             ETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             cCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence            9999988874 3 2        36779999999999988753   36899999999985 45555 48999999999999


Q ss_pred             eeeecC
Q 001258         1029 LRCRIN 1034 (1113)
Q Consensus      1029 ~~~~~~ 1034 (1113)
                      .+.++.
T Consensus       349 vv~~I~  354 (368)
T 1mda_H          349 DQSSVE  354 (368)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            998886

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=2.2e-10  Score=125.59  Aligned_cols=174  Identities=11%  Similarity=0.115  Sum_probs=135.1

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCCc-----------eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  887 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iw  887 (1113)
                      ..+..+++++...++++|+...+.+|+++...           ..... .+.. |+.++|   |+++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999997788889976433           11222 2455 999999   56788888 88999999


Q ss_pred             EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258          888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l  967 (1113)
                      |+.+.........|...+.++.+.+..  +++++.||.|.+||+..+....     ..       ..|++++|||+| ..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eE
Confidence            998866556677788889988887553  8889999999999999755321     11       368999999999 44


Q ss_pred             EEEcCCeEEEEeCCccce--eecccc----C---CCCCCeeEEEECCCCCEEEEE
Q 001258          968 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       968 ~~~~d~~v~v~d~~~~~~--~~~~~~----~---~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                      +...|+.+++|+..++++  ...+..    .   +|...|.+++|.+++.++++=
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            446999999999887775  444411    1   468899999999999998863

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.21  E-value=2.6e-10  Score=125.01  Aligned_cols=177  Identities=11%  Similarity=0.039  Sum_probs=130.4

Q ss_pred             ceEEEEEcCCCCeEEEEeCCCeEEEEEccCCce--------eeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      .++.+++++...++++|+.++ +++|+++....        .... ....+.. |++|+|  |+.  +|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence            689999999999999999986 66699875431        1111 1224666 999999  888  67777 8899999


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccc
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  573 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  573 (1113)
                      ||+.+.........|...+.++.+.+  .  .+++++.||.|.+||+.+.....    ...                   
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~--p--~~av~~~dG~L~v~dl~~~~~~~----~~~-------------------  163 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVN--N--TLVILNSVNDLSALDLRTKSTKQ----LAQ-------------------  163 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECS--S--EEEEEETTSEEEEEETTTCCEEE----EEE-------------------
T ss_pred             EEchhhhccCccceeecceeeEEecC--C--CEEEEECCCCEEEEEccCCcccc----ccC-------------------
Confidence            99998776667777888888876543  2  28888999999999998654321    112                   


Q ss_pred             cCceeEEEecCCCCEEEEEecCCcEEEEECCCCce--EEEEcc----C---CCCCCcCeEEECCCCCEEEEEE
Q 001258          574 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA----D---GGLPASPRIRFNKDGCLLAVST  637 (1113)
Q Consensus       574 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~----~---~~~~~v~~~~~s~~~~~l~~~~  637 (1113)
                        .+.+++|+|+|  ++.|..||.+++|+...++.  ...+..    +   .+...|.++.|.+++.++++-.
T Consensus       164 --~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          164 --NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             --SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             --CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence              34455566665  67789999999999887775  555621    1   2345799999999998888643

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.20  E-value=4e-09  Score=113.96  Aligned_cols=225  Identities=9%  Similarity=0.050  Sum_probs=148.7

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      .-..+..|++++..|+...  ++.|..||..+++. ..+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~   87 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV   87 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence            3456889999766666554  68999999987665 3333 346789999999 7875554 4 5689999998876533


Q ss_pred             eecc----cccCeEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          897 KLKG----HSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       897 ~l~~----h~~~V~~l~~s~d~~~L~s~s~D---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      ....    ....++.++++|+|+++++...+         ..-.+|.++....... .....       .....++|+||
T Consensus        88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~-------~~pngi~~spd  159 (297)
T 3g4e_A           88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQV-------DISNGLDWSLD  159 (297)
T ss_dssp             EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEE-------SBEEEEEECTT
T ss_pred             EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eeecc-------ccccceEEcCC
Confidence            2221    23458899999999987765332         3345666554221111 11100       13468999999


Q ss_pred             CcEEEEE--cCCeEEEEeC--Ccccee--eccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCC
Q 001258          964 QIHFLVV--HETQLAIFET--TKLECV--KQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1036 (1113)
Q Consensus       964 g~~l~~~--~d~~v~v~d~--~~~~~~--~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~ 1036 (1113)
                      ++.|+++  .++.|.+|++  .++...  +.+. ...+...+..++++++|.+.++...++.|.+||.++++.+..+.  
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~--  237 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK--  237 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE--
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE--
Confidence            9987664  5688999987  455432  1111 11224567899999999888887778899999999999888776  


Q ss_pred             cccCCCcccCccceEEEEe-CCCCCEEEEEe
Q 001258         1037 AYLPAGVSSNVHPLVIAAH-PQEPNEFALGL 1066 (1113)
Q Consensus      1037 ~~~~~gh~~~v~~i~~~~~-p~d~~~l~s~~ 1066 (1113)
                           .+...++  +++|. | |++.|..++
T Consensus       238 -----~p~~~~t--~~~f~g~-d~~~L~vt~  260 (297)
T 3g4e_A          238 -----LPVDKTT--SCCFGGK-NYSEMYVTC  260 (297)
T ss_dssp             -----CSSSBEE--EEEEESG-GGCEEEEEE
T ss_pred             -----CCCCCce--EEEEeCC-CCCEEEEEc
Confidence                 2223344  58888 5 556554443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.20  E-value=4.2e-10  Score=124.48  Aligned_cols=273  Identities=8%  Similarity=-0.016  Sum_probs=172.6

Q ss_pred             CceEEEEEeCCCceEEEeec--CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          752 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      .....++++++|+.+++...  ++.++||.+..      +.....   .-|.          .....+-..+..++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~---p~~~----------~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPF---PPQS----------GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEES---CCCC----------SSCCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecC---CCcc----------cCcccceeEeeEEEEcCC
Confidence            46789999999998777532  34356666541      111100   0000          001125567899999999


Q ss_pred             CCEEEEEe------CCeEEEEECCCCceeeeecCC------CCCeeEEEEecCCCcEEEEEe---cCCcEEEEEccccee
Q 001258          830 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV  894 (1113)
Q Consensus       830 ~~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~---~dg~v~iwd~~~~~~  894 (1113)
                      ++++++-.      ++.|.+||+.+++.+..+...      ...+..++++++++..+++..   .++.|.+||+.+++.
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            98666543      378999999988876665432      235689999984455556555   678999999998887


Q ss_pred             eeeecccccCeE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC
Q 001258          895 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  972 (1113)
Q Consensus       895 ~~~l~~h~~~V~-~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d  972 (1113)
                      ...+.+|..... ...+..+|..+.+.+.|++++.|..                      .+..++|+|||+.|+++ ..
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence            777766533211 1345567877878888888766642                      23679999999988875 33


Q ss_pred             C-eEEEEeCCc---c-----ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          973 T-QLAIFETTK---L-----ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       973 ~-~v~v~d~~~---~-----~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      + .+..++...   +     +....+...++......++++++|.++++...++.|.+||..+++......       . 
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-------~-  287 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-------D-  287 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------C-
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------C-
Confidence            3 455554321   1     111111111223456789999999999998889999999986666432221       1 


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEE
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW 1074 (1113)
                      .....+-.+++.+ +++++++.+..+.+.+|
T Consensus       288 ~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          288 EKLSWTDSFNFGS-DGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             GGGSCEEEEEECT-TSCEEEEECCGGGSGGG
T ss_pred             CceecCCeeEECC-CCcEEEEeCcccccccc
Confidence            1122344588887 67887777655544333

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.20  E-value=1.7e-09  Score=132.04  Aligned_cols=246  Identities=13%  Similarity=0.101  Sum_probs=154.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecC----CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      |...+..++|||||++++.+.+..    .+|++||+.+|+.+.. .                 +.  ......++|+ ||
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~-----------------~~--~~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-P-----------------LK--DVKFSGISWL-GN  185 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-E-----------------EE--EEESCCCEEE-TT
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-c-----------------cC--CceeccEEEe-CC
Confidence            455788999999999755544333    4799999999986542 0                 11  0113568999 99


Q ss_pred             CeEEEEeCCC-------------eEEEEEccCCcee-eeeeeeec-ccCCeeEEEEcCCCCeeEEEEec--CCCcEEEEe
Q 001258          433 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWD  495 (1113)
Q Consensus       433 ~~las~~~d~-------------~i~iwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~~~~~~~l~s~s--~d~~i~iwd  495 (1113)
                      +.|+.++.+.             .|++|++.++..- ..+..... |...+..+.|+|||+.+++.+..  .+..|++||
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d  265 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD  265 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence            9999988774             3999999876531 12222333 55568899999999963333222  235899999


Q ss_pred             CCCCc-eeeEeeccCcCEEEEeeeecCCceEEEEEecC---CcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeEE
Q 001258          496 ATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       496 ~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~  569 (1113)
                      +.++. ....+..+....... +++.. +.+++....+   +.|..||+.+...  ...+..+...+.  .         
T Consensus       266 ~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~---------  332 (693)
T 3iuj_A          266 LSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T---------  332 (693)
T ss_dssp             TTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E---------
T ss_pred             CCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E---------
Confidence            98764 456666666665554 33333 3455555443   5788898887543  122333322222  3         


Q ss_pred             eccccCceeEEEecCCCCEEEEEec-CC--cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC----CcE
Q 001258          570 QGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NGI  642 (1113)
Q Consensus       570 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i  642 (1113)
                                  |++++++|+.... ++  .|++|++..+ ....+.... ...+..+.+++++..++....+    +.+
T Consensus       333 ------------~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l  398 (693)
T 3iuj_A          333 ------------VHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTL  398 (693)
T ss_dssp             ------------EEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEE
T ss_pred             ------------EEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEE
Confidence                        4444445665554 43  6889998744 445554332 2345667778888777666544    789


Q ss_pred             EEEEcCCC
Q 001258          643 KILATSDG  650 (1113)
Q Consensus       643 ~iwd~~~~  650 (1113)
                      ..||+.++
T Consensus       399 ~~~d~~~g  406 (693)
T 3iuj_A          399 YRFEPKSG  406 (693)
T ss_dssp             EEECTTTC
T ss_pred             EEEECCCC
Confidence            99998776

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.18  E-value=1.4e-09  Score=120.39  Aligned_cols=250  Identities=12%  Similarity=0.049  Sum_probs=149.5

Q ss_pred             CCcEEEEEcCCCCeEEEEEe--cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ..+..++++|+|+ ++++..  .++.+.||.+.+++..   .|.-|.          ....+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            6889999999998 577653  2343667766555432   121111          01235667899999999998777


Q ss_pred             EEeC-----CCeEEEEEccCCceeeeeeeee----cccCCeeEEEEcCCCCeeEEEEec---CCCcEEEEeCCCCceeeE
Q 001258          437 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       437 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~~~~~~~l~s~s---~d~~i~iwd~~~~~~~~~  504 (1113)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6543     578999999998755422 221    22345789999987654 455555   678999999998887776


Q ss_pred             eeccCcCEE-EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecc-----------
Q 001258          505 FEGHEAPVY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----------  572 (1113)
Q Consensus       505 ~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----------  572 (1113)
                      +.+|..... ...+.  .+|..+.+.+.+|.++.|..              .+..++++|+|+.++...           
T Consensus       161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             ecCCCccccccccee--ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            655421100 01111  12233333344444433311              123344444443222110           


Q ss_pred             ---------------------ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258          573 ---------------------RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  631 (1113)
Q Consensus       573 ---------------------~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  631 (1113)
                                           .......++++++|+.+++...++.|.+||..+++........ ......+++|.++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence                                 0012334778888888888888999999998566644333221 233567899999988


Q ss_pred             EEEEEECCCc
Q 001258          632 LLAVSTNDNG  641 (1113)
Q Consensus       632 ~l~~~~~dg~  641 (1113)
                      ++++....+.
T Consensus       304 l~v~~~~~~~  313 (343)
T 2qe8_A          304 LYFDCNQLHH  313 (343)
T ss_dssp             EEEEECCGGG
T ss_pred             EEEEeCcccc
Confidence            7777665433

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.17  E-value=1.8e-05  Score=93.60  Aligned_cols=502  Identities=10%  Similarity=0.049  Sum_probs=255.2

Q ss_pred             CcceEEEEEcCCCCeEEEEe-CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  498 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~  498 (1113)
                      -.....|+|++.+..|..+. ..+.|..+++.+......  .+..-......+++.+.+.. ++++-...+.|.+.++..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence            34678999999777766654 467898999876532111  23333357889999997765 556666788999999764


Q ss_pred             CceeeEee-ccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          499 GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       499 ~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                      .. ...+. ..-.....+++.+.. |.++++-- ..+.|...+++.................+++.              
T Consensus       116 ~~-~~~l~~~~l~~P~~Iavdp~~-g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald--------------  179 (619)
T 3s94_A          116 SL-RKVLFWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLD--------------  179 (619)
T ss_dssp             CS-CEEEECSSCSCCCCEEEETTT-TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEE--------------
T ss_pred             CC-EEEEEeCCCCCCceEEEecCC-CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEE--------------
Confidence            43 33332 333445566765432 34444432 23455555554322222222222334444444              


Q ss_pred             eeEEEecCCCCEEEEE-ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258          577 LGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                             +++..|+.+ ...+.|...|++...........  ......+++..+ .+.++-...+.|...|..++.. ..
T Consensus       180 -------~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~  248 (619)
T 3s94_A          180 -------YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LR  248 (619)
T ss_dssp             -------TTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CE
T ss_pred             -------ccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cE
Confidence                   443344444 35677888888654333222211  223457888765 4444545667888888877733 22


Q ss_pred             ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258          656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  735 (1113)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~  735 (1113)
                      .+.....             .+.                                              .|.++......
T Consensus       249 ~i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp  269 (619)
T 3s94_A          249 EIHSDIF-------------SPM----------------------------------------------DIHAFSQQRQP  269 (619)
T ss_dssp             ECCSCCC-------------CCS----------------------------------------------EEEECCGGGSC
T ss_pred             EEecCCC-------------CCc----------------------------------------------EEEEEccccCC
Confidence            2211100             000                                              11111100000


Q ss_pred             -CCCcceecccCcccccCceEEEEE-eCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          736 -EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       736 -~~~~~~~~~~~~~~~~~~i~~~~~-s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                       ....+..       .......+++ +|.....-+.+.+|.                                .+.    
T Consensus       270 ~~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~--------------------------------~l~----  306 (619)
T 3s94_A          270 NATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGV--------------------------------KLL----  306 (619)
T ss_dssp             CCCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTC--------------------------------CBC----
T ss_pred             CccccccC-------CCCcccceEECCCCCCCceEeCCchh--------------------------------eec----
Confidence             0000000       0001111111 121111112222211                                000    


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceee-eec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~-~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                          ....+|..  ....+|+.+..+.|+..++....... .+. ..-..+..++|.+.++.++.+-...+.|+.+++..
T Consensus       307 ----~d~~~C~~--~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g  380 (619)
T 3s94_A          307 ----ENGKTCKD--GATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDG  380 (619)
T ss_dssp             ----TTSSCBCS--SCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             ----ccCcccCC--CCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCC
Confidence                11111111  12346777777888888887654321 121 12345789999985555555555678899999875


Q ss_pred             ceeeeeecccccCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ......+........+|++...+. +.++-+..+.|.+.+++.....  ...   ...   ......+++.|...+|..+
T Consensus       381 ~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~--~l~---~~~---l~~P~~iavdp~~G~ly~t  452 (619)
T 3s94_A          381 SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRK--ILI---SED---LEEPRAIVLDPMVGYMYWT  452 (619)
T ss_dssp             CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE---CTT---CCSEEEEEEETTTTEEEEE
T ss_pred             CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEE--EEE---ECC---CCCeeeEEEEcCCCcEEEe
Confidence            433333333345678899986544 4555556788999998764221  111   111   1246899999974444443


Q ss_pred             ---cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC-CCcEEEEecCCCceeeecCCCcccCCCcccC
Q 001258          971 ---HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSN 1046 (1113)
Q Consensus       971 ---~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1046 (1113)
                         ....|...+++.... ..+.. ..-.....|++++++..|+.+.. .+.|..++++.......+.       +.-..
T Consensus       453 D~g~~~~I~r~~~dG~~~-~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~-------~~l~~  523 (619)
T 3s94_A          453 DWGEIPKIERAALDGSDR-VVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVE-------DKIPH  523 (619)
T ss_dssp             ECSSSCEEEEEETTSCSC-EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEE-------CCCCS
T ss_pred             cCCCCCEEEEEccCCCcc-EEEEe-CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEec-------cCCCC
Confidence               235777777654332 22221 22457789999998777776654 4679999986543321111       11112


Q ss_pred             ccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1047 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1047 v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ...  ++..  ++.+.++-...+.|..-+..+++
T Consensus       524 P~g--lav~--~~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          524 IFG--FTLL--GDYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             SCC--EEEE--TTEEEEECTTSSCEEEEESSSCC
T ss_pred             cEE--EEEE--CCEEEEeecCCCeEEEEEcCCCc
Confidence            233  4433  23444554455678888877775

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.15  E-value=1e-08  Score=123.61  Aligned_cols=80  Identities=11%  Similarity=0.054  Sum_probs=58.9

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEE
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL  917 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L  917 (1113)
                      |.|..||+.+++.+..+.. ...+....++. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            6799999999998877653 33344555666 66788889999999999999999998886433 233446667788755


Q ss_pred             EEE
Q 001258          918 VSS  920 (1113)
Q Consensus       918 ~s~  920 (1113)
                      +..
T Consensus       535 v~~  537 (677)
T 1kb0_A          535 VSV  537 (677)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.15  E-value=1.1e-08  Score=111.94  Aligned_cols=228  Identities=12%  Similarity=0.022  Sum_probs=144.5

Q ss_pred             CcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  439 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  439 (1113)
                      -..+.+|+|++..+++++..++.|..||..+++...                    +. +...|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence            346889999977788888889999999998875432                    11 13479999999999987765 


Q ss_pred             CCCeEEEEEccCCceeeeeeeeec-c-cCCeeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCceeeEeeccCcC
Q 001258          440 SRHIVQIYSYHGGDEVRQHLEIDA-H-VGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP  511 (1113)
Q Consensus       440 ~d~~i~iwd~~~~~~~~~~~~l~~-h-~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~~h~~~  511 (1113)
                      .++ |.+||..+++... +..... + ...+.+++++|+|+  ++++...      .+.|..++  +++. ..+..+...
T Consensus       108 ~~g-l~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~  180 (326)
T 2ghs_A          108 DDG-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISI  180 (326)
T ss_dssp             TTE-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESS
T ss_pred             CCC-EEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcc
Confidence            444 9999998876432 211111 1 23689999999998  4444332      23455555  4543 333334445


Q ss_pred             EEEEeeeecCCceEE-EEEecCCcEEEEEcC--CC-CCe--eeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          512 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NL-GSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~-~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ...++|++  +++.+ ++.+.++.|.+||+.  ++ ...  ..+.         .+..         .......++++++
T Consensus       181 ~~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~---------~~~~---------~~~~p~gi~~d~~  240 (326)
T 2ghs_A          181 PNSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI---------DSTG---------IKGGMDGSVCDAE  240 (326)
T ss_dssp             EEEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE---------ECTT---------SSSEEEEEEECTT
T ss_pred             cCCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEE---------ECCC---------CCCCCCeeEECCC
Confidence            67788764  45555 455567899999986  32 110  0110         0000         0112334566666


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECC
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND  639 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  639 (1113)
                      |+..++...++.|.+||. +++.+..+....  ..+.+++|+ ++++.|++++..
T Consensus       241 G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          241 GHIWNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             SCEEEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCEEEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecC
Confidence            666666666789999998 677777776543  358899998 888777665543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.12  E-value=4.5e-08  Score=109.92  Aligned_cols=158  Identities=8%  Similarity=0.042  Sum_probs=99.0

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecc-------cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  503 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~  503 (1113)
                      ++..+.+++.++.|..+|..+|+.+... .+...       ...+.+.-... +.  .++.++.++.|..+|..+|+.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVS-GG--HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEE-TT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceEe-CC--EEEEEcCCCEEEEEECCCCCEEE
Confidence            4677888888999999999999876432 12111       22333222222 34  46777889999999999999887


Q ss_pred             EeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEec
Q 001258          504 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       504 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      ..............  . + ..++.++.++.|..+|..+++............ .  ......             ....
T Consensus       128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~~~-------------~~~~  187 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGESA-------------PTTA  187 (376)
T ss_dssp             EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCCCC-------------CEEE
T ss_pred             EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCCCC-------------cEEE
Confidence            66543322111111  1 2 378888899999999999888777655432211 0  000000             0001


Q ss_pred             CCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258          584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       584 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                        +..+++++.++.|..+|..+++.+.....
T Consensus       188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence              23577788899999999999988877653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.12  E-value=1.4e-08  Score=122.66  Aligned_cols=79  Identities=13%  Similarity=0.059  Sum_probs=58.8

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-eEEEEEcCCCCEE
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL  917 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L  917 (1113)
                      |.|..||+.+++.+..+..+.. ...-.++. .+.++++|+.||.|+.||..+|+.+.+++...+. ..-+.|..||+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            6799999999998877764432 33335555 6678999999999999999999999888754332 2446777888754


Q ss_pred             EE
Q 001258          918 VS  919 (1113)
Q Consensus       918 ~s  919 (1113)
                      +.
T Consensus       533 v~  534 (689)
T 1yiq_A          533 VT  534 (689)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=2.5e-08  Score=120.21  Aligned_cols=203  Identities=12%  Similarity=0.138  Sum_probs=135.3

Q ss_pred             eEEEEecCCCcEEEEEecCC-------------------cEEEEEcccceeeeeecc--cc-------cCeEEEEEcCCC
Q 001258          863 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  914 (1113)
Q Consensus       863 ~~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  914 (1113)
                      ..++++| ++.+|.++..++                   .|..+|..+|+.+..++.  |.       ....-+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            3578898 677777777664                   499999999998876653  31       122223334477


Q ss_pred             ---CEEEEEeCCCcEEEEeCCCCccccccccccC--------CCC------------C----C---CCCCCceEEEccCC
Q 001258          915 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ  964 (1113)
Q Consensus       915 ---~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~i~~~~~spdg  964 (1113)
                         ..|+.++.+|.|+++|..+++..........        .+.            .    +   ....-..++|+|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               6899999999999999999876432211000        000            0    0   00011367899998


Q ss_pred             cEEEEE-cC-------------------------------------------CeEEEEeCCccceeeccccCCCCCCeeE
Q 001258          965 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH 1000 (1113)
Q Consensus       965 ~~l~~~-~d-------------------------------------------~~v~v~d~~~~~~~~~~~~~~h~~~v~~ 1000 (1113)
                      .++++. .+                                           +.|..||+.+++.+..+..   ..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence            888773 21                                           6799999999998877653   334555


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE-EEEEeC------------
Q 001258         1001 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE-FALGLS------------ 1067 (1113)
Q Consensus      1001 l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~-l~s~~~------------ 1067 (1113)
                      ..++.++.+++.++.||.+++||..+++.+.++....    +  ....+  +.|.+ +|++ +++.+.            
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~----~--~~~~p--~~y~~-~G~~~v~~~~G~~~~~~~~~~~~  552 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGT----G--VVAAP--STYMV-DGRQYVSVAVGWGGVYGLAARAT  552 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS----C--CCSCC--EEEEE-TTEEEEEEEECCCHHHHHHCCSC
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCC----C--cccCC--EEEEe-CCEEEEEEeccCCcccccccccc
Confidence            6677788899999999999999999999999886321    2  22234  55555 5654 444332            


Q ss_pred             ----CCcEEEEeccC
Q 001258         1068 ----DGGVHVFEPLE 1078 (1113)
Q Consensus      1068 ----Dg~v~vW~~~~ 1078 (1113)
                          .+.+.+|.+..
T Consensus       553 ~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          553 ERQGPGTVYTFVVGG  567 (677)
T ss_dssp             SCCCCCEEEEEEETC
T ss_pred             ccCCCCeEEEEeccc
Confidence                36888888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.10  E-value=2.6e-08  Score=109.00  Aligned_cols=225  Identities=12%  Similarity=-0.022  Sum_probs=144.7

Q ss_pred             eEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          754 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       754 i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      ..+.+|+|++..+ ++...++.|..|+...                      +......     ....+.+++++++|++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~v~~i~~~~dg~l  103 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLAS----------------------GRKTVHA-----LPFMGSALAKISDSKQ  103 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTT----------------------TEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEE-----CCCcceEEEEeCCCeE
Confidence            4678899975544 4444568888887642                      2111110     2346889999999988


Q ss_pred             EEEEeCCeEEEEECCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEec------CCcEEEEEcccceeeeeecccc
Q 001258          833 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS  902 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~la~g~~------dg~v~iwd~~~~~~~~~l~~h~  902 (1113)
                      +++. ++.|.+||..+++.......    ....+..++++| +|+++++...      .+.|+.++  +++.. .+..+.
T Consensus       104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            7765 55699999988765432221    123578999999 7877665442      24566666  45533 333344


Q ss_pred             cCeEEEEEcCCCCEEEEE-eCCCcEEEEeCC--CC-ccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEE
Q 001258          903 KRITGLAFSHALNVLVSS-GADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI  977 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~-s~D~~v~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v  977 (1113)
                      .....++|+||++.|+.+ +.++.|.+|+++  ++ ..............   ...+..++++++|.++++. .++.|.+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            567899999999877554 557889999986  44 22111111111111   1245789999999877774 5688999


Q ss_pred             EeCCccceeeccccCCCCCCeeEEEEC-CCCCEEEEEeCC
Q 001258          978 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1016 (1113)
Q Consensus       978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~D 1016 (1113)
                      |+. +++.+..+.  .+...+++++|+ +|++.|++++..
T Consensus       256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence            998 566666654  235579999998 898877665543

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.09  E-value=8.7e-09  Score=112.83  Aligned_cols=250  Identities=11%  Similarity=-0.025  Sum_probs=153.8

Q ss_pred             CeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe-------
Q 001258          371 QTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-------  439 (1113)
Q Consensus       371 ~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------  439 (1113)
                      .+++++...++    +|.+.|..+++.+.+.                  -.+.. +  .+++||||+++.++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~~-P--~i~~spDg~~lyVan~~~~r~~   90 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAFL-S--LAVAGHSGSDFALASTSFARSA   90 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECTT-C--EEEECTTSSCEEEEEEEETTTT
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCCC-C--ceEECCCCCEEEEEcccccccc
Confidence            44566666555    8889999999988752                  22332 4  799999999999886       


Q ss_pred             ---CCCeEEEEEccCCceeeeeeeeecc-------cCCeeEEEEcCCCCeeEEEEec--CCCcEEE--EeCCCCceeeEe
Q 001258          440 ---SRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCG--DDKTIKV--WDATNGAKQYIF  505 (1113)
Q Consensus       440 ---~d~~i~iwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~~~~~~~l~s~s--~d~~i~i--wd~~~~~~~~~~  505 (1113)
                         .++.|.+||+.+++.+..   +.-.       ......++|+|||++  ++.+.  .+..|.+  +|+.+   +..+
T Consensus        91 ~G~~~~~VsviD~~T~~vv~~---I~v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i  162 (368)
T 1mda_H           91 KGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLT  162 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEE
T ss_pred             cCCCCCEEEEEECCCCCEEEE---EECCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEE
Confidence               368899999999987764   3222       134678999999996  44443  3567888  99877   4444


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC-----CCCee----eeeCCCCc----------------eEEEE
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRV----DYEAPGRW----------------CTTMA  560 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~----------------v~~~~  560 (1113)
                      .-- +.   ..+.+... ..+++.+.||.+.+.|+.+     ++...    .+.....+                +..+.
T Consensus       163 ~v~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD  237 (368)
T 1mda_H          163 KSA-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD  237 (368)
T ss_dssp             ECS-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEE
T ss_pred             ECC-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEE
Confidence            311 11   11223333 2345556677777777765     11110    00000111                11111


Q ss_pred             EccCCCeEEe------------ccccCceeEEEecCCCCEEEEEec---------CCcEEEEECCCCceEEEEccCCCCC
Q 001258          561 YSADGTRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLP  619 (1113)
Q Consensus       561 ~s~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~  619 (1113)
                      .......+..            +........++++|++++++.+..         ++.+.++|+.+++.+..+....   
T Consensus       238 ~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---  314 (368)
T 1mda_H          238 IPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---  314 (368)
T ss_dssp             CCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---
T ss_pred             CCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---
Confidence            1100000000            000111122678999988887543         2356699999999888876543   


Q ss_pred             CcCeEEECCCCC-EEEEEE-CCCcEEEEEcCCCccceeccc
Q 001258          620 ASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       620 ~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      ....++|+|||+ ++++.. .++.|.++|+.++ +.++.+.
T Consensus       315 ~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~  354 (368)
T 1mda_H          315 DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence            368999999997 566666 5899999999998 5555554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.08  E-value=1.7e-08  Score=109.58  Aligned_cols=229  Identities=11%  Similarity=0.033  Sum_probs=150.1

Q ss_pred             cCceEEEEEeCCCceE-EEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          751 ATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      ........|+++++.| ++...++.+..|+...                       ....  +..  +...+..++++++
T Consensus        44 ~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------------------~~~~--~~~--~~~~~~gl~~d~d   96 (305)
T 3dr2_A           44 ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------------------TVDV--LLD--ATAFTNGNAVDAQ   96 (305)
T ss_dssp             CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------------------CEEE--EEE--SCSCEEEEEECTT
T ss_pred             CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------------------CEEE--EeC--CCCccceeeECCC
Confidence            3456788999999854 5555568888886421                       1100  000  3456789999999


Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeee---cCC-CCCeeEEEEecCCCcEEEE----Eec-------------CCcEEEE
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATF---MPP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIY  887 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~---~~~-~~~i~~l~~s~~d~~~la~----g~~-------------dg~v~iw  887 (1113)
                      |+++++.. ++.|.+|+.+ ++.....   .+. ...+..+++++ +|+++++    |..             .+.|+.|
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            99776655 5789999986 4432221   111 13467899999 8888876    332             2567778


Q ss_pred             EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEc
Q 001258          888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  961 (1113)
Q Consensus       888 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  961 (1113)
                      |..+++.....  .....+.++|+||++.|+.+...      +.|.+|++..+............     ......++++
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d  247 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVD  247 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEEC
T ss_pred             cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEEC
Confidence            87666654433  44567899999999988777665      68999998764311111111111     1245689999


Q ss_pred             cCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEE
Q 001258          962 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1020 (1113)
Q Consensus       962 pdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~ 1020 (1113)
                      ++|.+.++. .+.|.+|+. +++.+..+...   ..+.+++|+++++.|+.++.++..+
T Consensus       248 ~~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          248 RGGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             TTSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence            999955544 456999998 46666665532   2589999999999988888664433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.07  E-value=1.2e-07  Score=106.47  Aligned_cols=214  Identities=10%  Similarity=0.035  Sum_probs=128.5

Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCe-----eEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeeccccc---
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAA-----TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK---  903 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~---  903 (1113)
                      +++++ ++.|..+|..+++.+..+.......     ......  + ..+++++.+|.|..+|..+++.+........   
T Consensus       146 v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          146 VLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            33343 6667777777776665544322111     222222  3 3577788899999999999988766543211   


Q ss_pred             ----CeEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEE
Q 001258          904 ----RITGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  977 (1113)
Q Consensus       904 ----~V~~l~~s~--d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v  977 (1113)
                          .+..+..+|  .+..+..++.++.+..+|..+++......    ..      ....+.. .++..++...++.+..
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~----~~------~~~~~~~-~~~~l~~~~~~g~l~~  291 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE----LG------SVNDFIV-DGNRIYLVDQNDRVMA  291 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC----CC------CEEEEEE-ETTEEEEEETTCCEEE
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc----CC------CCCCceE-ECCEEEEEcCCCeEEE
Confidence                000000111  24677778889999999999876542211    11      1223332 2444444468889999


Q ss_pred             EeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc-ceEEEEeC
Q 001258          978 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH-PLVIAAHP 1056 (1113)
Q Consensus       978 ~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~-~i~~~~~p 1056 (1113)
                      +|..+++.+....... ...+..+..  .+..|+.++.+|.|.++|..+++.+.+....       ...+. ...+    
T Consensus       292 ~d~~tG~~~w~~~~~~-~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~-------~~~~~~~~~~----  357 (376)
T 3q7m_A          292 LTIDGGVTLWTQSDLL-HRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVD-------SSGFQTEPVA----  357 (376)
T ss_dssp             EETTTCCEEEEECTTT-TSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECC-------TTCBCSCCEE----
T ss_pred             EECCCCcEEEeecccC-CCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecC-------CCcceeCCEE----
Confidence            9999998865543111 222333333  3567888899999999999999998776521       11121 1112    


Q ss_pred             CCCCEEEEEeCCCcEEEEe
Q 001258         1057 QEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1057 ~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
                       .+..|+.++.||.|+.|+
T Consensus       358 -~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          358 -ADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             -ETTEEEEEBTTSCEEEEE
T ss_pred             -ECCEEEEEeCCCEEEEEe
Confidence             245888889999999987

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.07  E-value=2.3e-08  Score=120.79  Aligned_cols=167  Identities=17%  Similarity=0.177  Sum_probs=115.0

Q ss_pred             EEEEecCCCcEEEEEecCCc-------------------EEEEEcccceeeeeecc--cc-------cCeEEEEEcCCCC
Q 001258          864 FLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN  915 (1113)
Q Consensus       864 ~l~~s~~d~~~la~g~~dg~-------------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  915 (1113)
                      .++++| +..++++++.++.                   |..||..+|+.+..++.  |.       ..+.......+|+
T Consensus       239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~  317 (689)
T 1yiq_A          239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK  317 (689)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence            578898 6778888887764                   99999999998877654  22       1222222223565


Q ss_pred             ---EEEEEeCCCcEEEEeCCCCcccccccccc------------------------CCCC----CC---CCCCCceEEEc
Q 001258          916 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGR----TP---TAQSDTRVQFH  961 (1113)
Q Consensus       916 ---~L~s~s~D~~v~iwd~~~~~~~~~~~~~~------------------------~~~~----~~---~~~~i~~~~~s  961 (1113)
                         .|+.++.+|.++++|..+++.........                        ..+.    .+   ....-..++|+
T Consensus       318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d  397 (689)
T 1yiq_A          318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN  397 (689)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE
T ss_pred             EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC
Confidence               78899999999999999987642111000                        0000    00   00011347899


Q ss_pred             cCCcEEEEE-c---------------------------------------------CCeEEEEeCCccceeeccccCCCC
Q 001258          962 QDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRESS  995 (1113)
Q Consensus       962 pdg~~l~~~-~---------------------------------------------d~~v~v~d~~~~~~~~~~~~~~h~  995 (1113)
                      |+...+++. .                                             ++.|..||+.+++.+.....   .
T Consensus       398 p~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~  474 (689)
T 1yiq_A          398 PDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY---V  474 (689)
T ss_dssp             TTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE---S
T ss_pred             CCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC---C
Confidence            988877763 1                                             26799999999998877653   2


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          996 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       996 ~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .++..-.++..+.++++|+.||.|+.||.++|+.+.++.
T Consensus       475 ~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          475 TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP  513 (689)
T ss_dssp             SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee
Confidence            233444666788899999999999999999999998876

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.06  E-value=7.2e-09  Score=126.37  Aligned_cols=242  Identities=12%  Similarity=0.097  Sum_probs=156.2

Q ss_pred             ccCceEEEEEeCCCceEEEeec-----CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEE
Q 001258          750 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  824 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l  824 (1113)
                      +...+..++|||||++++.+..     ...|++||+.                      +|..+...+    .......+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~----------------------tg~~~~~~~----~~~k~~~~  180 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVE----------------------SKQPLETPL----KDVKFSGI  180 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETT----------------------TCSEEEEEE----EEEESCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECC----------------------CCCCCcccc----CCceeccE
Confidence            4457888999999998875433     2456666655                      444322211    11113567


Q ss_pred             EEecCCCEEEEEe-CC-------------eEEEEECCCCce--eeee--cC-CCCCeeEEEEecCCCcEEEEEec----C
Q 001258          825 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT--MATF--MP-PPPAATFLAFHPQDNNIIAIGMD----D  881 (1113)
Q Consensus       825 ~~s~~~~~l~~~s-dg-------------~i~vwd~~~~~~--~~~~--~~-~~~~i~~l~~s~~d~~~la~g~~----d  881 (1113)
                      +|+ ||+.|+.++ +.             .|++|++.+...  ...+  .. +......+.||| ||++|+....    +
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG  258 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence            899 999998887 43             399999987643  2223  32 344578899999 7887765443    2


Q ss_pred             CcEEEEEcccce-eeeeecccccCeEEEEEcCCCCEEEEE-eCC---CcEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258          882 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSS-GAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  956 (1113)
Q Consensus       882 g~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~L~s~-s~D---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  956 (1113)
                      ..|+++|+.++. ....+..+.+..... |+++|..|+.. ..|   +.|..|++.++.......+.  . +..   .+.
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~--~-~~~---~~~  331 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI--P-ERQ---QVL  331 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE--C-CCS---SCE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe--c-CCC---CEE
Confidence            489999998763 455666677666665 66666655544 443   57899999886542222111  1 111   222


Q ss_pred             eEEEccCCcEEEEE--cCC--eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC----CcEEEEecCCCc
Q 001258          957 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1028 (1113)
Q Consensus       957 ~~~~spdg~~l~~~--~d~--~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D----g~v~vwd~~~~~ 1028 (1113)
                        .|++++++|+..  .++  .|.+|++.++.. ..+.. .+...+..+.++++++.|+....+    ++|+.||+.+++
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              899999988873  444  689999885543 33332 234567788889998877766555    889999998876


Q ss_pred             ee
Q 001258         1029 LR 1030 (1113)
Q Consensus      1029 ~~ 1030 (1113)
                      ..
T Consensus       408 ~~  409 (693)
T 3iuj_A          408 IS  409 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.04  E-value=1.1e-08  Score=112.69  Aligned_cols=177  Identities=14%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  505 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~  505 (1113)
                      ..+..+|. |..++.++.|..|| .+++.+.   ....+...+.++...+++.   +..++.+  |..+|. +++.+..+
T Consensus        25 ~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           25 PILAKNGT-IYLGSSNKNLYAIN-TDGSVKW---FFKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECTTSC-EECSSTTTTTEEEC-TTSCEEE---SSCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred             ceEccCCe-EEEEcCCCEEEEEC-CCCcEEE---EEecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence            34444554 55566778899999 7777544   2333444567888887776   4555544  888885 67665544


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ...........+.   + ..++.++.++.|..+|.. +............+.++...+++.                   
T Consensus        94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-------------------  149 (330)
T 3hxj_A           94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-------------------  149 (330)
T ss_dssp             CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-------------------
T ss_pred             ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-------------------
Confidence            3332222222222   2 367788889999999887 555555444433334444444443                   


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  646 (1113)
                         ++.++.++.|..||.. ++.+..+....  ..+.++.+.+++.+++..   +.|..+|
T Consensus       150 ---l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d  201 (330)
T 3hxj_A          150 ---IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN  201 (330)
T ss_dssp             ---EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC
T ss_pred             ---EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC
Confidence               7778888999999998 77776665442  346677777777755443   6777776

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.03  E-value=7.2e-08  Score=105.37  Aligned_cols=233  Identities=11%  Similarity=0.120  Sum_probs=148.0

Q ss_pred             EEe--cCCCEEEEEe--CCeEEEEECCCC----ceeeeec-------CCCCCeeEEEEecCCCcEEEEEecC------Cc
Q 001258          825 ALS--KNDSYVMSAS--GGKISLFNMMTF----KTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDD------SS  883 (1113)
Q Consensus       825 ~~s--~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~d------g~  883 (1113)
                      .++  +++++|++.+  ++.|.|+|+.+.    +..++++       ........+.++| +| +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  8899999887  689999999754    4445552       1112356678889 77 66666655      78


Q ss_pred             EEEEEcccceeeeeecccc---cCeEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCccccccc
Q 001258          884 IQIYNVRVDEVKSKLKGHS---KRITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRF  941 (1113)
Q Consensus       884 v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~d~~~L~s~s-------------------~D~~v~iwd~~~~~~~~~~~  941 (1113)
                      |.++|..+++.+.++..-.   .--..+.|+|+++.+++..                   .+.+|.+||+.+++....  
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t--  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS--  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--
Confidence            9999999999998886322   2234588899999999885                   368899999998543221  


Q ss_pred             cccCCCCCCCCCCCceEEE--ccCCcEEEEE-------cCCeEEEEeCCcccee--ecc--ccC---C-----------C
Q 001258          942 LQIPTGRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECV--KQW--VPR---E-----------S  994 (1113)
Q Consensus       942 ~~~~~~~~~~~~~i~~~~~--spdg~~l~~~-------~d~~v~v~d~~~~~~~--~~~--~~~---~-----------h  994 (1113)
                      +......    .....+.|  +|+|+++.++       .+++|.+|..+.++..  ..+  ...   +           -
T Consensus       244 I~vg~~g----~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEEN----RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTE----EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCC----CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            2221000    12344545  9999988873       3457776655433211  100  000   0           0


Q ss_pred             CCCeeEEEECCCCCEEEEEeC-CCcEEEEecC---CCceeeecCCCccc-----CCCcccCccceEEEEeCCCCCEEEEE
Q 001258          995 SAPITHATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus       995 ~~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~---~~~~~~~~~~~~~~-----~~gh~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      ...+..|.+|+||++|+++.. .+.|.+||+.   +.+++.++......     +.|......|-.+.++| ||++|+++
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVa  398 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVT  398 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEE
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEE
Confidence            245788999999999988775 5889999985   33555555422100     01111112344588888 78888887


Q ss_pred             e
Q 001258         1066 L 1066 (1113)
Q Consensus      1066 ~ 1066 (1113)
                      .
T Consensus       399 N  399 (462)
T 2ece_A          399 N  399 (462)
T ss_dssp             C
T ss_pred             c
Confidence            7

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.01  E-value=1.4e-07  Score=103.03  Aligned_cols=238  Identities=10%  Similarity=0.082  Sum_probs=149.5

Q ss_pred             CCCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-C
Q 001258          761 NSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G  838 (1113)
Q Consensus       761 ~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-d  838 (1113)
                      ++++++++.+. ++.|.|+|+......+.-.  ...     +  ...+...  .   .......+.++|+| +++++. +
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~--k~i-----e--~~~~~~~--~---g~s~Ph~~~~~pdG-i~Vs~~g~  157 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKII--KVI-----E--PEEVKKV--S---GYSRLHTVHCGPDA-IYISALGN  157 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEE--EEE-----C--HHHHHHH--H---CEEEEEEEEECSSC-EEEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceee--eee-----c--hhhcccc--c---CCCcccceeECCCe-EEEEcCCC
Confidence            77787776555 5889999975322111100  000     0  0000000  0   11134567888999 555543 4


Q ss_pred             ------CeEEEEECCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEe-------------------cCCcEEEEEcc
Q 001258          839 ------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM-------------------DDSSIQIYNVR  890 (1113)
Q Consensus       839 ------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~la~g~-------------------~dg~v~iwd~~  890 (1113)
                            |.|.++|..+++.+.++.....   --..+-|+| +++.+++..                   .+.+|.+||+.
T Consensus       158 ~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~  236 (462)
T 2ece_A          158 EEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR  236 (462)
T ss_dssp             TTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT
T ss_pred             cCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC
Confidence                  6899999999999988863322   234578899 788777774                   36799999999


Q ss_pred             cceeeeeeccc--ccCeEEEEE--cCCCCEEEEEeC------CCcEEEEeCCCCccccccccccCCC----CCC------
Q 001258          891 VDEVKSKLKGH--SKRITGLAF--SHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTG----RTP------  950 (1113)
Q Consensus       891 ~~~~~~~l~~h--~~~V~~l~~--s~d~~~L~s~s~------D~~v~iwd~~~~~~~~~~~~~~~~~----~~~------  950 (1113)
                      +++.++++..-  ......+.|  +|+++++..++.      +++|.+|..+.++......+.+...    ..+      
T Consensus       237 ~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f  316 (462)
T 2ece_A          237 KRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPF  316 (462)
T ss_dssp             TTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGG
T ss_pred             CCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccc
Confidence            98888877642  123455655  999999887774      5688877665432211111111110    000      


Q ss_pred             --CCCCCceEEEccCCcEEEEE--cCCeEEEEeCCc---cceeeccccCCC------------CCCeeEEEECCCCCEEE
Q 001258          951 --TAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK---LECVKQWVPRES------------SAPITHATFSCDSQLVY 1011 (1113)
Q Consensus       951 --~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~---~~~~~~~~~~~h------------~~~v~~l~~s~dg~~l~ 1011 (1113)
                        .......+.+|+||++|.++  ..+.|.+||+..   .+.+.....++.            ......++++|||++|+
T Consensus       317 ~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~Ly  396 (462)
T 2ece_A          317 KAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVY  396 (462)
T ss_dssp             TEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEE
T ss_pred             ccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEE
Confidence              01346889999999999996  567999999853   355555544321            11368899999999999


Q ss_pred             EEe
Q 001258         1012 ACF 1014 (1113)
Q Consensus      1012 s~~ 1014 (1113)
                      ++.
T Consensus       397 VaN  399 (462)
T 2ece_A          397 VTN  399 (462)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            988

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.00  E-value=0.00018  Score=84.97  Aligned_cols=497  Identities=9%  Similarity=-0.022  Sum_probs=249.7

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      ......+.+++|++.+.+++.+-...+.|..+++........                  ++...-.....+++.+.++.
T Consensus        36 ~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~------------------v~~~~~~~P~GlAvD~~~~~   97 (619)
T 3s94_A           36 VGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEK   97 (619)
T ss_dssp             CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE------------------EECSSCSCEEEEEEETTTTE
T ss_pred             EcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE------------------EEeCCCCCcCeEEEEecCCE
Confidence            335567889999998887666655678888888875421110                  12222246889999996665


Q ss_pred             EEEE-eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEe-eccCcC
Q 001258          435 FGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAP  511 (1113)
Q Consensus       435 las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~~h~~~  511 (1113)
                      |..+ ...+.|.+.++.+.....   .+.........|++.|.+.. ++++- +..+.|...++. |.....+ ...-..
T Consensus        98 ly~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~~~~  172 (619)
T 3s94_A           98 LYWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYW  172 (619)
T ss_dssp             EEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECC-CCceEEEEeCCCCC
Confidence            5554 557899999998654221   12234456789999998664 33333 334667666754 4333333 223445


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      ...+++.+.. +.+.++-...+.|...|++.................                     +++..+ ..+++
T Consensus       173 P~Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~g---------------------i~~~~~-~ly~t  229 (619)
T 3s94_A          173 PNGLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFA---------------------LTLFED-ILYWT  229 (619)
T ss_dssp             EEEEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCC---------------------EEESSS-EEEEE
T ss_pred             CcEEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceE---------------------EEEeCC-EEEEe
Confidence            6777876533 345555556677888777542221111101111112                     233222 22333


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEECC--------CcEEEEEcCCCccceeccccccc
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND--------NGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                      -...+.|...|..+++....+....  .....+.+. |..+-.  +.+.        ..+.+......            
T Consensus       230 d~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~~~~~~------------  293 (619)
T 3s94_A          230 DWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLMSPVKP------------  293 (619)
T ss_dssp             CTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEECSSTT------------
T ss_pred             cCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEccccCCC--ccccccCCCCcccceEECCCCCC------------
Confidence            3456778888887776655543221  112233322 100000  0000        00111000000            


Q ss_pred             cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCC-ccccCCCcceeeccCCCceeeEeccCCCCCCcce
Q 001258          663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD-VRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  741 (1113)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~  741 (1113)
                                 .               ..|......    .+..+ ..+......++..+..+.|+..++........  
T Consensus       294 -----------~---------------~~C~C~~g~----~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~--  341 (619)
T 3s94_A          294 -----------F---------------YQCACPTGV----KLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDI--  341 (619)
T ss_dssp             -----------S---------------EEEECCTTC----CBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCE--
T ss_pred             -----------C---------------ceEeCCchh----eecccCcccCCCCceEEEEEcccceEEEecCCCcccee--
Confidence                       0               000000000    00000 01111112222223345677667654322111  


Q ss_pred             ecccCcccccCceEEEEEeCCCceEEEee-cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258          742 SLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  820 (1113)
Q Consensus       742 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~  820 (1113)
                      .+.+.   .-..+.+++|.+.+..|+.+. ..+.|+.+++.....                      ... ...  .-..
T Consensus       342 ~~~~~---~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~----------------------~~v-~~~--~~~~  393 (619)
T 3s94_A          342 VLQLE---DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS----------------------QFV-VTA--QIAH  393 (619)
T ss_dssp             ECCCS---CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC----------------------EEE-ECS--SCSC
T ss_pred             EEecc---ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc----------------------EEE-EEC--CCCC
Confidence            11111   234577899998665555544 457777766542100                      000 000  2245


Q ss_pred             ccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-cCCcEEEEEcccceeeee
Q 001258          821 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~v~iwd~~~~~~~~~  897 (1113)
                      +..++++..+..|..+.  .+.|.+.+++.......+...-.....+++.|..|.+..+-. ..+.|...++........
T Consensus       394 p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l  473 (619)
T 3s94_A          394 PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVL  473 (619)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             cCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEE
Confidence            67899998777777665  588999998765433333334456899999994455544432 235677666653222222


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCe
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ  974 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~  974 (1113)
                      ....-...++|++.+++..|..+. ..+.|...+++......  ...   +..   .....+++..+  +|+.+  ..+.
T Consensus       474 ~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~---~~l---~~P~glav~~~--~ly~tD~~~~~  543 (619)
T 3s94_A          474 VNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVE---DKI---PHIFGFTLLGD--YVYWTDWQRRS  543 (619)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEE---CCC---CSSCCEEEETT--EEEEECTTSSC
T ss_pred             EeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--Eec---cCC---CCcEEEEEECC--EEEEeecCCCe
Confidence            233345678999998777776665 45678888887643211  111   111   12345665444  44443  4556


Q ss_pred             EEEEeCCcc
Q 001258          975 LAIFETTKL  983 (1113)
Q Consensus       975 v~v~d~~~~  983 (1113)
                      |...+..++
T Consensus       544 I~~~~k~~g  552 (619)
T 3s94_A          544 IERVHKRSA  552 (619)
T ss_dssp             EEEEESSSC
T ss_pred             EEEEEcCCC
Confidence            666666655

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.99  E-value=0.0002  Score=84.73  Aligned_cols=504  Identities=8%  Similarity=-0.060  Sum_probs=261.4

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      -..+.+++|++.+..+..+-..++.|..+++.......                   +..........+++.+.+..|..
T Consensus        36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~   96 (628)
T 4a0p_A           36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW   96 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred             CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence            35688999999888777777778899999887543221                   11111235678899876665554


Q ss_pred             E-eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          438 A-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       438 ~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      + ...+.|.+.++.+.....   .+...-.....|++.|.... ++++- +..+.|...++.... ...+...-.....+
T Consensus        97 tD~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~Gl  171 (628)
T 4a0p_A           97 ADTGTNRIEVSKLDGQHRQV---LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANGL  171 (628)
T ss_dssp             EETTTTEEEEEETTSTTCEE---EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEEE
T ss_pred             EECCCCEEEEEecCCCcEEE---EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcceE
Confidence            4 456889999987654221   12234456789999997664 33333 345678888865433 33333344566778


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      ++.+.. +.+.++-...+.|...|++.... ..+.........+++                     .. +..+++-...
T Consensus       172 alD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav---------------------~~-~~ly~tD~~~  227 (628)
T 4a0p_A          172 TIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQ---------------------YQ-DYIYWTDWSR  227 (628)
T ss_dssp             EEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEE---------------------ET-TEEEEEETTT
T ss_pred             EEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEE---------------------EC-CEEEEecCCC
Confidence            876533 34555556677888888865333 222211122223332                     22 2223344457


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEE-CCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  674 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1113)
                      +.|...|..+++....+....  .....+.. ++..+.               ... ++.. -.+... ..        +
T Consensus       228 ~~I~~~dk~tg~~~~~l~~~~--~~p~~i~v~~~~~q~---------------~~n-~C~~-~ng~C~-~~--------C  279 (628)
T 4a0p_A          228 RSIERANKTSGQNRTIIQGHL--DYVMDILVFHSSRQS---------------GWN-ECAS-SNGHCS-HL--------C  279 (628)
T ss_dssp             TEEEEEETTTCCSCEEEECSC--CSCCEEEEECGGGSC---------------CCC-TTTT-TGGGCS-SE--------E
T ss_pred             CEEEEEECCCCCceEEEecCC--CCcceeeeeeecccc---------------cce-Eecc-CCCCcc-hh--------h
Confidence            788888877776655554221  11222222 111100               000 0000 000000 00        0


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                      +..                                  +.+.+.. .+..|.    .+..                  ...
T Consensus       280 ~~~----------------------------------~~~~~~C-~C~~g~----~l~~------------------d~~  302 (628)
T 4a0p_A          280 LAV----------------------------------PVGGFVC-GCPAHY----SLNA------------------DNR  302 (628)
T ss_dssp             EEE----------------------------------TTTEEEE-ECSTTC----EECT------------------TSS
T ss_pred             hcC----------------------------------CCCCeeE-EcCCCc----Eecc------------------cCC
Confidence            000                                  0000000 000010    0000                  000


Q ss_pred             EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEE
Q 001258          755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  834 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  834 (1113)
                      +|.  .+ ..+++.+. ...|+-..+.....                  ....+.  +.   .-..+.+++|++.+..|.
T Consensus       303 ~C~--~~-~~~Ll~s~-~~~i~~i~l~~~~~------------------~~~~l~--~~---~~~~~~~ld~d~~~~~iy  355 (628)
T 4a0p_A          303 TCS--AP-TTFLLFSQ-KSAINRMVIDEQQS------------------PDIILP--IH---SLRNVRAIDYDPLDKQLY  355 (628)
T ss_dssp             CEE--CC-SSEEEEEE-TTEEEEECCCTTCC------------------CCEECC--CT---TCSCEEEEEEETTTTEEE
T ss_pred             cCc--cc-cceeeeec-cceEEEEecccccC------------------ceEEEE--eh---hcCCceEEEEecCCCeEE
Confidence            011  01 22233322 23333222211000                  000000  10   234577899999888888


Q ss_pred             EEe--CCeEEEEECCCCceeeeecC------CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee-cccccCe
Q 001258          835 SAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRI  905 (1113)
Q Consensus       835 ~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l-~~h~~~V  905 (1113)
                      .+.  .+.|..+++........+..      ....+..+++....+++..+-+..+.|.+.++. |+....+ .......
T Consensus       356 ~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~P  434 (628)
T 4a0p_A          356 WIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDRP  434 (628)
T ss_dssp             EEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCCE
T ss_pred             EEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCce
Confidence            776  57899998875443333332      234678999998445566666677899999986 4444333 3345678


Q ss_pred             EEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeC
Q 001258          906 TGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET  980 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~-D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~  980 (1113)
                      .+|++.|...+|..+.. ..  .|...+++......  ..   ....   .....+++++++..|+.+  ..+.|..+++
T Consensus       435 r~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~~  506 (628)
T 4a0p_A          435 RAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LF---FSGL---SKPIALALDSRLGKLFWADSDLRRIESSDL  506 (628)
T ss_dssp             EEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EE---eccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEeC
Confidence            99999994444443332 22  46666666532211  11   1111   245889999988777765  4578999998


Q ss_pred             CccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          981 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       981 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +.. ....+.. ........+++.. +.+..+=...+.|...|..+|+....+
T Consensus       507 dG~-~r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          507 SGA-NRIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TSC-SCEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CCC-ceEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            543 3333331 2234567777754 444444445577888888777654433

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.95  E-value=3.5e-08  Score=108.60  Aligned_cols=218  Identities=14%  Similarity=0.106  Sum_probs=134.1

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  442 (1113)
                      +..+..+|.  +..|+.++.|..|| .+++.+..                   ...+...+.++...++|.+++ ++.+ 
T Consensus        24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~-   79 (330)
T 3hxj_A           24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK-   79 (330)
T ss_dssp             CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred             CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence            344556676  56677888999999 88876532                   111233567777777776544 4333 


Q ss_pred             eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCC
Q 001258          443 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN  522 (1113)
Q Consensus       443 ~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~  522 (1113)
                       |..+|. +++.+.   .+...........+. ++   .+..++.++.|..+|.. ++.......+...+.++..  ..+
T Consensus        80 -l~~~d~-~g~~~~---~~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~  147 (330)
T 3hxj_A           80 -VYAINP-DGTEKW---RFDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED  147 (330)
T ss_dssp             -EEEECC-CGGGGG---GSCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred             -EEEECC-CCcEEE---EEECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence             888886 555433   122222223333443 44   36777888999999988 8777666655444444443  334


Q ss_pred             ceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEE
Q 001258          523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  602 (1113)
Q Consensus       523 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  602 (1113)
                      + .++.++.++.|..+|.. +.....+......+.++...+++.                      +..++  +.|..||
T Consensus       148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~----------------------l~v~t--~~l~~~d  201 (330)
T 3hxj_A          148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT----------------------IYFGS--DKVYAIN  201 (330)
T ss_dssp             S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC----------------------EEEES--SSEEEEC
T ss_pred             C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE----------------------EEEEe--CEEEEEC
Confidence            4 46778888999999987 555555554444444444444443                      55555  8899999


Q ss_pred             CCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEE
Q 001258          603 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  646 (1113)
Q Consensus       603 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  646 (1113)
                       .+++.........  ..+.++...++|.+. +++.++.+..++
T Consensus       202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~l~-v~t~~~gl~~~~  241 (330)
T 3hxj_A          202 -PDGTEKWNFYAGY--WTVTRPAISEDGTIY-VTSLDGHLYAIN  241 (330)
T ss_dssp             -TTSCEEEEECCSS--CCCSCCEECTTSCEE-EEETTTEEEEEC
T ss_pred             -CCCcEEEEEccCC--cceeceEECCCCeEE-EEcCCCeEEEEC
Confidence             6777776665432  357788888887544 455667777665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=5.6e-08  Score=110.22  Aligned_cols=240  Identities=12%  Similarity=0.079  Sum_probs=162.1

Q ss_pred             cCCCEEEEEe--CCeEEEEECCCCceeeeecCC-CCCeeEEEE-e-cCCCcEEEEEe------------------cCCcE
Q 001258          828 KNDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM------------------DDSSI  884 (1113)
Q Consensus       828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~la~g~------------------~dg~v  884 (1113)
                      +||+++.+..  ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++                  .++.+
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceE
Confidence            4999999887  578999999999988754322 345788888 4 8 777887774                  34589


Q ss_pred             EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC--------------------------------------cE
Q 001258          885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--------------------------------------QL  926 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--------------------------------------~v  926 (1113)
                      .+.|..+.+.+.++.--. ....++++|||+++++++.+.                                      .|
T Consensus       178 tvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          178 TAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            999999988887775322 456788999999999988653                                      35


Q ss_pred             EEEeCCCCcccccc-ccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccc------------eeecccc
Q 001258          927 CVWSSDGWEKQKNR-FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE------------CVKQWVP  991 (1113)
Q Consensus       927 ~iwd~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~------------~~~~~~~  991 (1113)
                      .+.|..+.+.  .. ...+..+     ....++.++|||++++++  .+.+|.++|+.+.+            .+.....
T Consensus       257 ~VID~~~~~~--~~~~~~Ipvg-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          257 KVVDGRKEAS--SLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEEECSGGGC--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             EEEeCcccCC--ceeEEEEecC-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence            5555554110  01 0111112     245789999999999985  66789999999764            2333332


Q ss_pred             CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC----------CceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258          992 RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus       992 ~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~----------~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
                         ......++|++||...++...|+.|.+||+++          .+.+.++..+ +.| ||...-.  ....+| ||++
T Consensus       330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~~~~~--g~t~~~-DGk~  401 (595)
T 1fwx_A          330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLKTVM--GETLDA-TNDW  401 (595)
T ss_dssp             ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEEETT--TTSTTC-CSSE
T ss_pred             ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccceecc--ceEeCC-CCCE
Confidence               45789999999994445566899999999987          4566665532 122 3322111  133456 8899


Q ss_pred             EEEEeCCC--cE-----------EEEeccCCCcccc
Q 001258         1062 FALGLSDG--GV-----------HVFEPLESEGKWG 1084 (1113)
Q Consensus      1062 l~s~~~Dg--~v-----------~vW~~~~~~~~~~ 1084 (1113)
                      |++...-.  .+           .++|++.+++++.
T Consensus       402 l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv  437 (595)
T 1fwx_A          402 LVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV  437 (595)
T ss_dssp             EEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred             EEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence            88765422  23           7899977774443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=4.4e-10  Score=125.32  Aligned_cols=189  Identities=13%  Similarity=0.116  Sum_probs=107.3

Q ss_pred             CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCC
Q 001258          871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  950 (1113)
Q Consensus       871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~  950 (1113)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.|+.|+.||..+++.............  
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~--   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV--   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHH--
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc--
Confidence            456888999999999999999999988876  5666666667888888888999999999988765321111100000  


Q ss_pred             CCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          951 TAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       951 ~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                          .....+..++ .+++ +.++.+..||..+|+.+..+..  +.    ...++|++..|++++.|+.|+.||..+|+.
T Consensus        84 ----~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           84 ----QASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             ----TTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             ----ccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCCE
Confidence                0011112344 4444 6789999999999998776653  11    245677889999999999999999999988


Q ss_pred             eeecCCCcccCCCcccCccceEEEEeCCCC---CEEEEEeCCCcEEEEeccCCCccccCC
Q 001258         1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEP---NEFALGLSDGGVHVFEPLESEGKWGVP 1086 (1113)
Q Consensus      1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~---~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1086 (1113)
                      +.++....+         .+  .++.+ +.   ..+++++.||.|+.||..+|+..|...
T Consensus       153 ~W~~~~~~~---------~~--~~~~~-~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          153 RWNATYFDY---------AA--SLPED-DVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCEEEEEEE---------CC--BCCCC-CTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEeEecccc---------cC--ccccC-CccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            766541111         11  11111 11   467778899999999999999777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.84  E-value=1.2e-09  Score=121.84  Aligned_cols=184  Identities=8%  Similarity=-0.021  Sum_probs=109.3

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCc
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ++..+++++.|+.|..||..+|+.+..   +..  +.+.+..+..++.  ++++++.|+.|+.||..+|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            688999999999999999999987763   333  4566666677777  577888999999999999998777654321


Q ss_pred             CEEEEeeeecC-CceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          511 PVYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       511 ~v~~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ...  ..++.- ++..+++++.|+.|+.||..+++.+..+..+..    ..                     ++|++..+
T Consensus        81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~---------------------~~p~~~~v  133 (369)
T 2hz6_A           81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DS---------------------LSPSTSLL  133 (369)
T ss_dssp             HHH--TTCSCC-----CCCCEEEEEEEEECCC-----------------------------------------------E
T ss_pred             ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----cc---------------------ccccCCEE
Confidence            110  001111 235788888999999999998877765543321    11                     22345568


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCC---CEEEEEECCCcEEEEEcCCCcc
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG---CLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                      ++++.++.|+.||..+|+.+..+....    .....+..+.   ..+++++.+|.+..||..+++.
T Consensus       134 ~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          134 YLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             EEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred             EEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence            889999999999999998776654321    1233344432   4577788999999999998843

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.80  E-value=5.6e-08  Score=110.22  Aligned_cols=328  Identities=11%  Similarity=0.098  Sum_probs=186.3

Q ss_pred             EEEEEecCCcEEEEEcCCCCCeeeeeCCCCc-e-------EEEEE-------------ccCCCeEEeccccCceeEEEec
Q 001258          525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-C-------TTMAY-------------SADGTRTYQGFRKRSLGVVQFD  583 (1113)
Q Consensus       525 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-v-------~~~~~-------------s~~~~~~~~~~~~~~i~~~~~~  583 (1113)
                      .+.||+..|.++++-+.+++.+..+..-... -       .+...             ..+|...+   ..+.......|
T Consensus        17 ~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~---~~gd~hh~~~s   93 (595)
T 1fwx_A           17 GFWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIH---DNGDLHHVHMS   93 (595)
T ss_dssp             EEECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSC---CCCCBCCEEEE
T ss_pred             EEeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceec---ccCCCCccccC
Confidence            3678889999999999888776654321110 0       00000             01111000   01111223343


Q ss_pred             C-----CCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEE-C-CCCCEEEEEECCCcEEEEEcCCCcccee
Q 001258          584 T-----TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-N-KDGCLLAVSTNDNGIKILATSDGIRLLR  655 (1113)
Q Consensus       584 ~-----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~  655 (1113)
                      .     ||++++... .++.|.+.|+.+.++...+..... .....+++ + |+++++++++.... =+  ..++ ..+.
T Consensus        94 ~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g-~~phg~~~~~~p~~~~v~~~~~~~~-p~--~~dg-~~l~  168 (595)
T 1fwx_A           94 FTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA-KGIHGLRPQKWPRSNYVFCNGEDET-PL--VNDG-TNME  168 (595)
T ss_dssp             EETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC-CSEEEEEECCSSBCSEEEEEECSCE-ES--SCSS-SSTT
T ss_pred             CCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCC-CCCcceeeeecCCCcEEEEeccccc-cc--CCCC-cccc
Confidence            3     777777765 466799999999998886654332 24567887 5 99999988864311 00  0011 0000


Q ss_pred             ccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCC
Q 001258          656 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  735 (1113)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~  735 (1113)
                      .                                                              ....++.+.+.|..+.+
T Consensus       169 ~--------------------------------------------------------------~~~~~~~vtvID~~t~~  186 (595)
T 1fwx_A          169 D--------------------------------------------------------------VANYVNVFTAVDADKWE  186 (595)
T ss_dssp             C--------------------------------------------------------------GGGEEEEEEEEETTTTE
T ss_pred             c--------------------------------------------------------------ccccCceEEEEECCCCe
Confidence            0                                                              00011223333333211


Q ss_pred             CCCcceecccCcccccCceEEEEEeCCCceEEEeecC---------------CeEEEEEccccc-cCCCCceeeeecCee
Q 001258          736 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---------------AIHLLWKWQRTE-RNSSGKATASVAPQL  799 (1113)
Q Consensus       736 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d---------------g~i~vw~~~~~~-~~~~~~~~~~~~~~l  799 (1113)
                      .   ...+..     ...-..++++|+|+++++++.+               ..+.+.++.+.. ..++|+...-..+.+
T Consensus       187 v---~~qI~V-----gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          187 V---AWQVLV-----SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             E---EEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             E---EEEEEe-----CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            0   001100     0122456677888877777754               236666655431 222333332345667


Q ss_pred             cCCCC--ccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCc------------eeeeecCCCCCee
Q 001258          800 WQPPS--GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK------------TMATFMPPPPAAT  863 (1113)
Q Consensus       800 w~~~~--g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~  863 (1113)
                      .|..+  +......+.   -.....++.++|||++++++.  +++|.++|+.+.+            ....+. -.....
T Consensus       259 ID~~~~~~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~  334 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL  334 (595)
T ss_dssp             EECSGGGCCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred             EeCcccCCceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence            77776  433111111   234567899999999999987  6899999998653            222332 234578


Q ss_pred             EEEEecCCCcEEEEEecCCcEEEEEccc----------ceeeeeecccccCe-----EEEEEcCCCCEEEEEeC---CCc
Q 001258          864 FLAFHPQDNNIIAIGMDDSSIQIYNVRV----------DEVKSKLKGHSKRI-----TGLAFSHALNVLVSSGA---DSQ  925 (1113)
Q Consensus       864 ~l~~s~~d~~~la~g~~dg~v~iwd~~~----------~~~~~~l~~h~~~V-----~~l~~s~d~~~L~s~s~---D~~  925 (1113)
                      .++|+| +|....+...|++|.+||+.+          .+.+.++..|..+-     .++.++|||++|+++..   |+-
T Consensus       335 h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~  413 (595)
T 1fwx_A          335 HTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRF  413 (595)
T ss_dssp             EEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSS
T ss_pred             eEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccc
Confidence            899999 776666677899999999987          55677776664432     22345799999999864   442


Q ss_pred             ----------EEEEeCCCCc
Q 001258          926 ----------LCVWSSDGWE  935 (1113)
Q Consensus       926 ----------v~iwd~~~~~  935 (1113)
                                -.++|+.+++
T Consensus       414 ~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          414 LNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             CCCCSSCCEEEEEEECSSSS
T ss_pred             ccCCCCCCCcceEEEcCCCc
Confidence                      1788886544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.72  E-value=0.0021  Score=79.11  Aligned_cols=535  Identities=12%  Similarity=0.073  Sum_probs=270.3

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      ...|.++....+|.  |-.|+.+| +..||..+++-..              +     .......|.++.. .+| .|-.
T Consensus        62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~--------------~-----~~~~~~~i~~i~~-~~g-~lWi  117 (758)
T 3ott_A           62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ--------------P-----ETDFPTDVRTMAL-QGD-TLWL  117 (758)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC--------------C-----SCCCCSCEEEEEE-ETT-EEEE
T ss_pred             CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC--------------c-----ccCCCceEEEEEe-cCC-cEEE
Confidence            45688988888886  44555554 7889987653211              0     0111235777765 355 4555


Q ss_pred             EeCCCeEEEEEccCCceeeeeeee-e-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEe-ecc----Cc
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA  510 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h----~~  510 (1113)
                      ++.+ -+..+|..+++... .... . -....|.++....+|.  +.+ |... -+..+|..+++..... ...    ..
T Consensus       118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  191 (758)
T 3ott_A          118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL  191 (758)
T ss_dssp             EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred             EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence            5555 47888987755321 1000 0 1134688888888887  333 4433 4778887666532211 111    12


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      .|.++..  +.++..|..|+. +-+..+|..+............                     .+..+....++. |.
T Consensus       192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~---------------------~i~~i~~d~~g~-lW  246 (758)
T 3ott_A          192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNN---------------------SIKSLALDGNGD-LL  246 (758)
T ss_dssp             CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEE---------------------EEEEEEECTTCC-EE
T ss_pred             eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCC---------------------eEEEEEEcCCCC-EE
Confidence            3777763  333344444553 3477777654321111000111                     233344444444 45


Q ss_pred             EEecCCcEEEEECCCCceEEEEccCC-----CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1113)
                      .|+. +-+.+++..+++.........     ....|.++....+|.+.+ |+..| +.++.. +.  ....+        
T Consensus       247 igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~-~~--~~~~~--------  312 (758)
T 3ott_A          247 AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRY-NS--ALQFI--------  312 (758)
T ss_dssp             EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECC-CC---CEEE--------
T ss_pred             EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-cccccc-CC--ceeEE--------
Confidence            5554 457888887665432221100     112466777777776555 34445 443321 11  01000        


Q ss_pred             ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258          666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  745 (1113)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  745 (1113)
                                                                                      ....           .
T Consensus       313 ----------------------------------------------------------------~~~~-----------~  317 (758)
T 3ott_A          313 ----------------------------------------------------------------PISQ-----------I  317 (758)
T ss_dssp             ----------------------------------------------------------------EHHH-----------H
T ss_pred             ----------------------------------------------------------------eccc-----------C
Confidence                                                                            0000           0


Q ss_pred             CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258          746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  825 (1113)
Q Consensus       746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~  825 (1113)
                      ........|.++....+|...+. +.+| +..++.......         .+..+.....       ...-....|.++.
T Consensus       318 ~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~  379 (758)
T 3ott_A          318 TGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY  379 (758)
T ss_dssp             SCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred             CCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence            00002245777888888885554 4455 333432211000         0000100000       0000234688888


Q ss_pred             EecCCCEEEEEeCCeEEEEECCCCceeeee--cC----CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc------e
Q 001258          826 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E  893 (1113)
Q Consensus       826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~------~  893 (1113)
                      -..+|++.+.. ++.|..||..+++...-.  ..    ....|.++.... +++ |-+|+..+-|.++|..+.      .
T Consensus       380 ~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~  456 (758)
T 3ott_A          380 EDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ  456 (758)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred             ECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence            88888766544 678999998876543221  11    123477777765 554 555777777888886531      1


Q ss_pred             ee--eeec---c-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEE
Q 001258          894 VK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  967 (1113)
Q Consensus       894 ~~--~~l~---~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l  967 (1113)
                      ..  ..+.   + ....|.++...++|++.+.++..+-|..+|..+++...     ...........+.++....+|...
T Consensus       457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW  531 (758)
T 3ott_A          457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW  531 (758)
T ss_dssp             EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred             eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence            11  1111   1 12358999999999877644444458889987644321     111101101245677778888877


Q ss_pred             EEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCc
Q 001258          968 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNV 1047 (1113)
Q Consensus       968 ~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v 1047 (1113)
                      +.+. +.+..|+..+++....-...-....|.++... +|. |..++.+| +..+|..+.+... +.    .+.   ...
T Consensus       532 igt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~---~~~  599 (758)
T 3ott_A          532 VGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTN---KRF  599 (758)
T ss_dssp             EEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CC---CCC
T ss_pred             EEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCC---Cce
Confidence            6654 56888998766543211000113568888763 554 55555566 7778888765432 21    111   122


Q ss_pred             cceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1048 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1048 ~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .  ...+...+| .|..|+.+| +..++...
T Consensus       600 ~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~  626 (758)
T 3ott_A          600 T--SLLFDPKED-CVYLGGADG-FGISHSNL  626 (758)
T ss_dssp             S--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred             e--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence            2  233333355 666667676 55666654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.71  E-value=0.0016  Score=82.26  Aligned_cols=175  Identities=7%  Similarity=-0.003  Sum_probs=96.6

Q ss_pred             cEEEEEcccceeeeeecc-cccCeEEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCccccccccccCCC
Q 001258          883 SIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTG  947 (1113)
Q Consensus       883 ~v~iwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~L~s~s----------~D~~v~iwd~~~~~~~~~~~~~~~~~  947 (1113)
                      .|++.|-.+++.+..+.- ....+.+++   |..+ ..+|+.|.          ..|.|.++++..++. +........ 
T Consensus       808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL-~lv~~~~v~-  885 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL-QTVAEKEVK-  885 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEE-EEEEEEEES-
T ss_pred             EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEE-EEEEEEEcC-
Confidence            366677666666544432 122344444   4333 46788775          347899999874321 111111111 


Q ss_pred             CCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec--C
Q 001258          948 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--A 1025 (1113)
Q Consensus       948 ~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~--~ 1025 (1113)
                           +.+++++-- +| +|+++-..++++|++...+.++ .....+. .|..+.....+.+++.|..-..|.++.+  .
T Consensus       886 -----g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~  956 (1158)
T 3ei3_A          886 -----GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPM  956 (1158)
T ss_dssp             -----SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETT
T ss_pred             -----CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcC
Confidence                 345555432 34 6777777899999998665433 1111111 2333344345778888887777777554  3


Q ss_pred             CCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1026 NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1026 ~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .+++...-.  .    -+...++  ++.|..  ...++.+..+|+|++.....
T Consensus       957 ~~~L~~~a~--D----~~~~~vt--a~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          957 EGNFEEIAR--D----FNPNWMS--AVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTEEEEEEE--C----CSCBCEE--EEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             CCeEEEEEe--e----cccccEE--EEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence            333332111  1    1223344  455553  35888899999999998765

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=5.1e-06  Score=99.92  Aligned_cols=168  Identities=14%  Similarity=0.144  Sum_probs=112.3

Q ss_pred             EEEEecCCCcEEEEEecCC-------------------cEEEEEcccceeeeeecc--cc-------cCeEEEEEcCCCC
Q 001258          864 FLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHALN  915 (1113)
Q Consensus       864 ~l~~s~~d~~~la~g~~dg-------------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~~  915 (1113)
                      .++++| +..++++++.++                   .|.-+|..+|+.+..++.  |.       .++....+..+|+
T Consensus       234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            578888 667888887766                   399999999998877653  32       2233233334665


Q ss_pred             ---EEEEEeCCCcEEEEeCCCCccccccccc-------c--CCCC--------CC-----------CCCCCceEEEccCC
Q 001258          916 ---VLVSSGADSQLCVWSSDGWEKQKNRFLQ-------I--PTGR--------TP-----------TAQSDTRVQFHQDQ  964 (1113)
Q Consensus       916 ---~L~s~s~D~~v~iwd~~~~~~~~~~~~~-------~--~~~~--------~~-----------~~~~i~~~~~spdg  964 (1113)
                         .++.++.+|.++++|..+++........       .  ..+.        ..           ....-..++++|+.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~  392 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT  392 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTT
T ss_pred             EEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCC
Confidence               6889999999999999998764211000       0  0000        00           00001237888887


Q ss_pred             cEEEEE-------------------------------------cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCC
Q 001258          965 IHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus       965 ~~l~~~-------------------------------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
                      ..+++.                                     .++.|..||+.+++.+.....   ..++....+...+
T Consensus       393 g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~g  469 (668)
T 1kv9_A          393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTAG  469 (668)
T ss_dssp             TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEETT
T ss_pred             CEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeCC
Confidence            766641                                     126799999999998766543   2233444455678


Q ss_pred             CEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258         1008 QLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus      1008 ~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      .++++++.||.+++||..+++.+.++..
T Consensus       470 g~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          470 NLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CEEEEECCcccchhhhhhcChhheEecC
Confidence            8999999999999999999999988873

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.70  E-value=1.1e-05  Score=85.18  Aligned_cols=202  Identities=10%  Similarity=-0.021  Sum_probs=132.7

Q ss_pred             CccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      .+..+++++++..|..+.  ++.|.++++.+......+.........++++++++.++++-...+.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467899999888777776  689999999866544334333356889999984455555555678999999874332222


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  972 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d  972 (1113)
                      ..........++++|++..|..+..   .+.|..++++.....   .+.. ..    ......+++++++..|+++  ..
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~---~~~~-~~----~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILAQ-DN----LGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEEC-TT----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE---EEEE-CC----CCCCcEEEEcCCCCEEEEEECCC
Confidence            2222246789999997666655554   367888888653211   1110 11    1245789999988777664  56


Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecC
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +.|.+++..+........  . ......+++.  +..|+.+. ..+.|.++|..+++.+..+.
T Consensus       189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            789999998654433322  1 2334566654  45555554 56899999999999988875

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.70  E-value=1.6e-05  Score=93.17  Aligned_cols=166  Identities=13%  Similarity=0.128  Sum_probs=104.8

Q ss_pred             EEEEecCCCcEEEEEecC----------------CcEEEEEcccceeeeeecc--cc--------cCeEEEEEc-CCC--
Q 001258          864 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HS--------KRITGLAFS-HAL--  914 (1113)
Q Consensus       864 ~l~~s~~d~~~la~g~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~d~--  914 (1113)
                      ..++.+ ...++..+..+                +.|.-+|..+|+.+-.++.  |.        .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            456677 55566666655                3799999999998866653  21        1222 2222 467  


Q ss_pred             -CEEEEEeCCCcEEEEeCCCCcccccccccc----------CCCCC---------------------CCCCCCceEEEcc
Q 001258          915 -NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQ  962 (1113)
Q Consensus       915 -~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~i~~~~~sp  962 (1113)
                       ..++.++.+|.++++|..+++.........          ..+..                     .....-..++++|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567788999999999999987643221110          00000                     0000113567777


Q ss_pred             CCcEEEEE----------------------------------------cCCeEEEEeCCccceeeccccCCCCCCeeEEE
Q 001258          963 DQIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHAT 1002 (1113)
Q Consensus       963 dg~~l~~~----------------------------------------~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~ 1002 (1113)
                      +..++++.                                        ..+.|..||+.+++.+-.....   .++..-.
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~  479 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGT  479 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBC
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcc
Confidence            76665541                                        2357888999999887665421   1222112


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258         1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus      1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +...+.+++.++.||.++.||.++|+.+.++.
T Consensus       480 ~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          480 MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            23367788889999999999999999998886

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.68  E-value=3.4e-06  Score=101.55  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCC-E
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  916 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  916 (1113)
                      |.|..||+.+++.+....... ......+.. .+.++++|+.||.|+.||..+++.+..+....+.. .-+.+..+|+ +
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y  515 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence            789999999999877665332 233334444 56788889999999999999999998886543221 2234445666 4


Q ss_pred             EEEEe
Q 001258          917 LVSSG  921 (1113)
Q Consensus       917 L~s~s  921 (1113)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.66  E-value=1.6e-06  Score=89.31  Aligned_cols=216  Identities=11%  Similarity=0.019  Sum_probs=144.3

Q ss_pred             ceeeeecCCCC--CeeEEEEecCCCcEEEEEec--CCcEEEEEcccceeeeeecccc-cCeEEEEEcCCCCEE-EEEeCC
Q 001258          850 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL-VSSGAD  923 (1113)
Q Consensus       850 ~~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~L-~s~s~D  923 (1113)
                      +.+.++. |..  ....++|++ ++.+.++.+.  ++.|+++|+.+++.+..+.-.. .....+++.  +..| ++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            3445554 333  357999998 6665555443  5799999999999988765221 222355554  4444 445568


Q ss_pred             CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---Cee
Q 001258          924 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT  999 (1113)
Q Consensus       924 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~  999 (1113)
                      +.+.++|..+.+.....    ..+ .+     ....+++||+.++++ .++.|.++|.++.+.+..+....+..   .+.
T Consensus        86 ~~v~viD~~t~~v~~~i----~~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNF----THQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEEE----ECC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcEEEEE----ECC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            89999999986554321    111 11     234577788887775 56789999999999888876543222   356


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccC----CCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258         1000 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1000 ~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~----~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
                      .+.|. +|+..+....++.|.+.|..+++.+.++......+    .++.....+..++|.|+...+++++...+.|++-+
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~  234 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIK  234 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEE
Confidence            78888 77555555567899999999999999887532110    11222233456999995555678888889999999


Q ss_pred             ccCCC
Q 001258         1076 PLESE 1080 (1113)
Q Consensus      1076 ~~~~~ 1080 (1113)
                      +...+
T Consensus       235 l~~~~  239 (266)
T 2iwa_A          235 LHLVR  239 (266)
T ss_dssp             EEECC
T ss_pred             Eeccc
Confidence            87654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.64  E-value=2.3e-05  Score=92.18  Aligned_cols=197  Identities=9%  Similarity=-0.093  Sum_probs=119.6

Q ss_pred             EEEEecCCCEEEEEe-C----------------CeEEEEECCCCceeeeecCC--C-------CCeeEEEEecCCC---c
Q 001258          823 CFALSKNDSYVMSAS-G----------------GKISLFNMMTFKTMATFMPP--P-------PAATFLAFHPQDN---N  873 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~s-d----------------g~i~vwd~~~~~~~~~~~~~--~-------~~i~~l~~s~~d~---~  873 (1113)
                      .++++++...+..+. +                +.|..+|..+++.+..++..  .       ....-+.... +|   +
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~-~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPV-NGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEE-TTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEeccc-CCcEEE
Confidence            456777666666654 2                25999999999988776432  1       1111222334 56   4


Q ss_pred             EEEEEecCCcEEEEEcccceeeeeecccc-------------cCe--------------------------EEEEEcCCC
Q 001258          874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHS-------------KRI--------------------------TGLAFSHAL  914 (1113)
Q Consensus       874 ~la~g~~dg~v~iwd~~~~~~~~~l~~h~-------------~~V--------------------------~~l~~s~d~  914 (1113)
                      +++.++.+|.++++|..+|+.+....-..             .++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            67889999999999999998876553211             011                          235778888


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCC
Q 001258          915 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES  994 (1113)
Q Consensus       915 ~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h  994 (1113)
                      .+++..+.+....++.....-         ..+. ...+....+..+|.+.  ....++.|..||..+++.+..+...  
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~---------~~g~-~~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~--  463 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPY---------RAGQ-FFVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEK--  463 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCC---------CTTS-CCCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEES--
T ss_pred             CEEEEEchhcccccccccccc---------ccCC-ccccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCC--
Confidence            888888777666655543210         0010 0000001122233221  0013467889999999887665432  


Q ss_pred             CCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          995 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       995 ~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                       ..+....+...+..++.++.||.|++||..+|+.+.++..
T Consensus       464 -~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          464 -FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             -SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             -CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence             2233333344566788899999999999999999988863

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.63  E-value=6.4e-06  Score=84.78  Aligned_cols=220  Identities=8%  Similarity=-0.048  Sum_probs=132.7

Q ss_pred             CcceeEeccCCCC--cEEEEEcCCCCeEEEEEec--CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcce
Q 001258          348 PKTVTRTLNQGSS--PMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSV  423 (1113)
Q Consensus       348 ~~~~~~~~~h~~~--V~~~~~spdg~~ll~~gs~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  423 (1113)
                      ..++..++.|...  ...++|+|||. |.++.+.  ++.|.+.|..+++.+....+                 ..+ ...
T Consensus         8 ~~~vv~~~p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------------~~~-~fg   68 (266)
T 2iwa_A            8 IVEVLNEFPHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENIHKM-----------------DDS-YFG   68 (266)
T ss_dssp             EEEEEEEEECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEEEEC-----------------CTT-CCE
T ss_pred             CceEEEEEECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEEEec-----------------CCC-cce
Confidence            3456777788754  57999999975 5555443  57999999999998874221                 111 122


Q ss_pred             EEEEEcCCCCeEE-EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee
Q 001258          424 NRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  502 (1113)
Q Consensus       424 ~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~  502 (1113)
                      ..+++.  |+.|. +.-.++.+.++|..+.+.+..   +..-...  ...+++||+. ++++ ..++.|.++|..+.+.+
T Consensus        69 eGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~---i~~g~~~--g~glt~Dg~~-l~vs-~gs~~l~viD~~t~~v~  139 (266)
T 2iwa_A           69 EGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN---FTHQMKD--GWGLATDGKI-LYGS-DGTSILYEIDPHTFKLI  139 (266)
T ss_dssp             EEEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE---EECCSSS--CCEEEECSSS-EEEE-CSSSEEEEECTTTCCEE
T ss_pred             EEEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE---EECCCCC--eEEEEECCCE-EEEE-CCCCeEEEEECCCCcEE
Confidence            345554  44554 445678999999999887764   3211111  2345568885 3344 45889999999999888


Q ss_pred             eEeeccC-----cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          503 YIFEGHE-----APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       503 ~~~~~h~-----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      ..+.-..     ...+.+.|.   ++...+....++.|.+.|..+++....+...+..-..+   ..+.     ......
T Consensus       140 ~~I~Vg~~~~p~~~~nele~~---dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~---~~~~-----~~~~v~  208 (266)
T 2iwa_A          140 KKHNVKYNGHRVIRLNELEYI---NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLI---DEGF-----RDIDVL  208 (266)
T ss_dssp             EEEECEETTEECCCEEEEEEE---TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHH---HTTC-----TTCCCE
T ss_pred             EEEEECCCCcccccceeEEEE---CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccc---cccc-----cccCce
Confidence            8775321     235667754   45555666568899999999877766554321000000   0000     000122


Q ss_pred             eEEEecCCCCE-EEEEecCCcEEEEECCCC
Q 001258          578 GVVQFDTTKNR-FLAAGDDFSIKFWDMDSV  606 (1113)
Q Consensus       578 ~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~  606 (1113)
                      ..++++|+++. ++++...+.|.+.++...
T Consensus       209 nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          209 NGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            33444444433 455557788888877543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.54  E-value=3.5e-06  Score=85.34  Aligned_cols=198  Identities=10%  Similarity=0.110  Sum_probs=129.9

Q ss_pred             eeeeecCCCCC--eeEEEEecCCCcEEEEEecCC--cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEe-CCCc
Q 001258          851 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQ  925 (1113)
Q Consensus       851 ~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~  925 (1113)
                      .++++. |...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.-.. ........+++..|.... .++.
T Consensus        33 vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           33 IVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred             EEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence            345553 5444  4788998  467777777776  99999999999988876432 333332333455555444 5889


Q ss_pred             EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCCC---eeEE
Q 001258          926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHA 1001 (1113)
Q Consensus       926 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~~---v~~l 1001 (1113)
                      +.+||.++.+.......    +       -....+++|++.|+.+ ..+.|.++|..+.+.+..+.......+   +..+
T Consensus       109 v~v~D~~t~~~~~ti~~----~-------~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNEL  177 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNY----D-------GEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNEL  177 (262)
T ss_dssp             EEEEETTTCCEEEEEEC----S-------SCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEE
T ss_pred             EEEEECccCcEEEEEEC----C-------CCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCcccccccee
Confidence            99999998665432221    1       1234455788887775 467899999999998888765333333   4457


Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC---c-ccCccceEEEEeCCCCCEEEEE
Q 001258         1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG---V-SSNVHPLVIAAHPQEPNEFALG 1065 (1113)
Q Consensus      1002 ~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g---h-~~~v~~i~~~~~p~d~~~l~s~ 1065 (1113)
                      .|. +|+..+..-.+..|.+.|..+++.+..+......+..   + ...+ +.-++|+|....++++|
T Consensus       178 e~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~v-lNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          178 EWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDV-LNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             EEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCC-EEEEEEETTTTEEEEEE
T ss_pred             EEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCc-eEEEEEcCCCCEEEEEC
Confidence            776 7765555556889999999999999998865333211   1 1222 23699999554455555

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.53  E-value=4.6e-05  Score=89.55  Aligned_cols=82  Identities=10%  Similarity=0.057  Sum_probs=52.5

Q ss_pred             CCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEE
Q 001258          881 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  960 (1113)
Q Consensus       881 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  960 (1113)
                      +|.|..||+.+++.+.++... ..+.+..+...+..++.++.|+.|+.||..+++......  ...+.     ....+.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~--~~~~~-----~~~p~~~  514 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK--MPSGG-----IGSPMTY  514 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE--CSSCC-----CSCCEEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe--CCCCc-----EeeeEEE
Confidence            578999999999988776532 223333333346678889999999999999987653221  11111     1133456


Q ss_pred             ccCCcEEEEE
Q 001258          961 HQDQIHFLVV  970 (1113)
Q Consensus       961 spdg~~l~~~  970 (1113)
                      ..+|+.++..
T Consensus       515 ~~~G~~yv~~  524 (571)
T 2ad6_A          515 SFKGKQYIGS  524 (571)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            6788866653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.52  E-value=4.8e-06  Score=84.36  Aligned_cols=186  Identities=11%  Similarity=0.074  Sum_probs=124.0

Q ss_pred             ccEEEEecCCCEEEEEe-CC--eEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          821 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...+.|+ ++.+..+++ +|  .|+++|+++++.+..+.... ........++++++.+..-.++.+.+||..+.+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t  122 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS  122 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE
Confidence            4778898 665555555 55  89999999999988876433 3333333332445555556789999999999999988


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  976 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~  976 (1113)
                      +..-. .=..++  +|++.|+.+..+++|.++|..+.+......... .+...  ..+..+.|. +|+..+.. .+..|.
T Consensus       123 i~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I~  195 (262)
T 3nol_A          123 FNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKIV  195 (262)
T ss_dssp             EECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred             EECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeEE
Confidence            87532 223344  577777776667889999998866543322211 11110  123346665 77655555 678999


Q ss_pred             EEeCCccceeeccccCC--------C--CCCeeEEEECCCCCEEEEEeC
Q 001258          977 IFETTKLECVKQWVPRE--------S--SAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~~--------h--~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                      +.|.++++.+..+...+        +  ..-.+.|||+|+++.|+..+.
T Consensus       196 vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          196 RIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999987776421        0  235688999999888877763

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.52  E-value=0.0088  Score=75.68  Aligned_cols=215  Identities=11%  Similarity=0.110  Sum_probs=118.5

Q ss_pred             ecCeecCCCCcccccc-ccCCCCCCCCccEEEEe---c-CCCEEEEEe-----------CCeEEEEECCCCceeeee-cC
Q 001258          795 VAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALS---K-NDSYVMSAS-----------GGKISLFNMMTFKTMATF-MP  857 (1113)
Q Consensus       795 ~~~~lw~~~~g~~~~~-~~~~~~~~~~v~~l~~s---~-~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~-~~  857 (1113)
                      ..+++.|+.+...+.. .+.   ..+.+.+++.-   . ...++++|.           .|.|.+|++..++..... ..
T Consensus       807 s~i~lidp~t~~~i~~~~l~---~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~  883 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFL---QNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKE  883 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECC---TTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEeCCCCeEEEEEeCC---CCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEE
Confidence            3456777766654322 122   34455555532   2 246888774           156999998754322111 12


Q ss_pred             CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 001258          858 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  937 (1113)
Q Consensus       858 ~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~  937 (1113)
                      ..+.+++++--  +|++|| |- ...|++|++...+.+..-..+-..|..+.....+++++.|+.-..|.+...+..+. 
T Consensus       884 v~g~v~al~~~--~g~Lla-~i-g~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~-  958 (1158)
T 3ei3_A          884 VKGAVYSMVEF--NGKLLA-SI-NSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEG-  958 (1158)
T ss_dssp             ESSCEEEEEEE--TTEEEE-EE-TTEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTT-
T ss_pred             cCCcCEEEeee--CCEEEE-Ec-CCEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCC-
Confidence            35678887754  455544 33 47899999986654431111222233333333578899998877787766543221 


Q ss_pred             cccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcc-------c---eeeccccCCCCCCeeEEE---EC
Q 001258          938 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-------E---CVKQWVPRESSAPITHAT---FS 1004 (1113)
Q Consensus       938 ~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~-------~---~~~~~~~~~h~~~v~~l~---~s 1004 (1113)
                        ..........+  ..++++.|-.++.++++-.++.+.++.....       +   ....|..   ...|+++.   +.
T Consensus       959 --~L~~~a~D~~~--~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhl---G~~vt~~~~~sl~ 1031 (1158)
T 3ei3_A          959 --NFEEIARDFNP--NWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHL---GEFVNVFCHGSLV 1031 (1158)
T ss_dssp             --EEEEEEECCSC--BCEEEEEEEETTEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEEC---SSCEEEEEECCSC
T ss_pred             --eEEEEEeeccc--ccEEEEEEEccCcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeC---CCcEeeEEeeeee
Confidence              11112122211  4677888877776655557888888865431       1   1122221   45677765   33


Q ss_pred             CC---------CCEEEEEeCCCcEEEEec
Q 001258         1005 CD---------SQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus      1005 ~d---------g~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      +.         ...++.++.+|.|.+.--
T Consensus      1032 ~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A         1032 MQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp             CC-------CEEEEEEEEETTSCEEEEEE
T ss_pred             cCCCccccccccceEEEEecCCEEEEEEE
Confidence            32         234777888999887743

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.50  E-value=7e-05  Score=87.78  Aligned_cols=78  Identities=18%  Similarity=0.125  Sum_probs=50.4

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCCEE
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVL  917 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~L  917 (1113)
                      |.|..||+.+++.+....... +...-.+.- .+.++++++.||.++.||..+|+.+.+++.....+ .-+.+..+|+..
T Consensus       453 G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          453 GQIKAYNAITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEECCCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence            678889999988876654221 111111222 45677779999999999999999998876443222 224555677643


Q ss_pred             E
Q 001258          918 V  918 (1113)
Q Consensus       918 ~  918 (1113)
                      +
T Consensus       531 v  531 (599)
T 1w6s_A          531 V  531 (599)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=5.1e-06  Score=84.03  Aligned_cols=182  Identities=9%  Similarity=0.076  Sum_probs=122.8

Q ss_pred             ccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...+.|+. +.+..+.+ +|.|+++|+++++.++.+ . ......  +++.  ++++.+..-.++.+.+||..+.+.+.+
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t  131 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT  131 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence            46788863 33334444 689999999999998887 2 233333  4443  456666666789999999999999998


Q ss_pred             ecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEE
Q 001258          898 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  976 (1113)
Q Consensus       898 l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~  976 (1113)
                      +..- ..-..++  +|++.|+.+..+++|.++|..+.+.......... +..  ...+..+.|. +|+..+.. ....|.
T Consensus       132 i~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~--v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          132 TRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQP--VELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-Ccc--cccccccEEe-CCEEEEEECCCCeEE
Confidence            8753 2224454  5788888877789999999988765433222111 100  0123456666 77655555 677999


Q ss_pred             EEeCCccceeeccccC---------C--CCCCeeEEEECCCCCEEEEEe
Q 001258          977 IFETTKLECVKQWVPR---------E--SSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       977 v~d~~~~~~~~~~~~~---------~--h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      +.|.++++.+..+...         .  -..-.+.|||+|+++.|+..+
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999988776542         1  123568899999877766655

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.49  E-value=2.9e-06  Score=85.82  Aligned_cols=197  Identities=14%  Similarity=0.075  Sum_probs=131.8

Q ss_pred             eeeeecCCCCC--eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE--EEEEcCCCCEEEEEeCCCcE
Q 001258          851 TMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT--GLAFSHALNVLVSSGADSQL  926 (1113)
Q Consensus       851 ~~~~~~~~~~~--i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~--~l~~s~d~~~L~s~s~D~~v  926 (1113)
                      .+.++. |...  ...+.|+  ++.+..+.+.+|.|+++|+.+++.+..+ - .....  .+++.. ++..+..-.++.+
T Consensus        45 Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v  118 (268)
T 3nok_A           45 IIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEE
T ss_pred             EEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEE
Confidence            344553 4433  4788887  4678888888999999999999988877 2 22333  355543 3444455578899


Q ss_pred             EEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---CeeEEE
Q 001258          927 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT 1002 (1113)
Q Consensus       927 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~~l~ 1002 (1113)
                      .+||.++.+.......    ..       ....+++|++.|+++ ..+.|.++|..+.+.+..+....+..   .++.+.
T Consensus       119 ~V~D~~Tl~~~~ti~~----~~-------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY----SG-------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEEETTTTEEEEEEEC----SS-------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECCcCcEEEEEeC----CC-------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            9999998665432221    10       123444778888886 47899999999999988877544333   345677


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCC----Cc-ccCccceEEEEeCCCCCEEEEEe
Q 001258         1003 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA----GV-SSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus      1003 ~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~----gh-~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      |. +|+..+....+..|.+.|..+++.+..+......+.    .+ ...| ...+++.|...+++++|-
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~v-lNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAV-LNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCC-EEEEEECTTTCCEEEEET
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCc-eEEEEEcCCCCEEEEeCC
Confidence            76 776555554688999999999999998886422110    11 1223 236999996666777763

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.47  E-value=2.7e-05  Score=91.51  Aligned_cols=80  Identities=10%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCCE
Q 001258          838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNV  916 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~  916 (1113)
                      +|.|..||+.+++.+........ +..-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.+..+|+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            47899999999988766543222 22212222 35578889999999999999999998887544322 22566667764


Q ss_pred             EEE
Q 001258          917 LVS  919 (1113)
Q Consensus       917 L~s  919 (1113)
                      .++
T Consensus       543 Yv~  545 (582)
T 1flg_A          543 YLG  545 (582)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.44  E-value=0.00015  Score=76.32  Aligned_cols=223  Identities=12%  Similarity=0.047  Sum_probs=136.2

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      ..+.+++|++++.+|+++-...+.|..++..++....                   +..........+++++++..|..+
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-------------------~~~~~~~~p~~ia~d~~~~~lyv~   96 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT-------------------IIRQDLGSPEGIALDHLGRTIFWT   96 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE-------------------EECTTCCCEEEEEEETTTTEEEEE
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE-------------------EEECCCCCccEEEEEecCCeEEEE
Confidence            4578999999888777777778899999987654321                   111122467899999976666555


Q ss_pred             -eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCceeeEee-ccCcCEEE
Q 001258          439 -YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFE-GHEAPVYS  514 (1113)
Q Consensus       439 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~-~h~~~v~~  514 (1113)
                       ...+.|.++++..... ..  ...........++++|++..+ +++...  .+.|..+++. +.....+. ........
T Consensus        97 d~~~~~I~~~~~~g~~~-~~--~~~~~~~~P~~i~vd~~~g~l-yv~~~~~~~~~I~~~~~d-g~~~~~~~~~~~~~P~g  171 (267)
T 1npe_A           97 DSQLDRIEVAKMDGTQR-RV--LFDTGLVNPRGIVTDPVRGNL-YWTDWNRDNPKIETSHMD-GTNRRILAQDNLGLPNG  171 (267)
T ss_dssp             ETTTTEEEEEETTSCSC-EE--EECSSCSSEEEEEEETTTTEE-EEEECCSSSCEEEEEETT-SCCCEEEECTTCSCEEE
T ss_pred             ECCCCEEEEEEcCCCCE-EE--EEECCCCCccEEEEeeCCCEE-EEEECCCCCcEEEEEecC-CCCcEEEEECCCCCCcE
Confidence             4567899999875432 21  112222467899999977753 333332  4688888865 33333332 23345677


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-e
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-G  593 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~  593 (1113)
                      +++++.. +.+.++....+.|..+|........... ....                     ...++..  +..++.+ .
T Consensus       172 ia~d~~~-~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~---------------------P~gi~~d--~~~lyva~~  226 (267)
T 1npe_A          172 LTFDAFS-SQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQY---------------------PFAVTSY--GKNLYYTDW  226 (267)
T ss_dssp             EEEETTT-TEEEEEETTTTEEEEEETTEEEEEEEEE-CCCS---------------------EEEEEEE--TTEEEEEET
T ss_pred             EEEcCCC-CEEEEEECCCCEEEEEecCCCceEEEec-CCCC---------------------ceEEEEe--CCEEEEEEC
Confidence            8876532 2455666667889999886422111111 0111                     1122332  2344444 4


Q ss_pred             cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258          594 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  631 (1113)
Q Consensus       594 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  631 (1113)
                      ..+.|.++|..+++.+..+.... ......+++.|++.
T Consensus       227 ~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~~~  263 (267)
T 1npe_A          227 KTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALSQC  263 (267)
T ss_dssp             TTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECSCC
T ss_pred             CCCeEEEEeCCCCCceEEEcccc-ccccceeeecCccC
Confidence            66899999999999888886432 12357788888764

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.43  E-value=5.4e-05  Score=82.39  Aligned_cols=237  Identities=12%  Similarity=0.082  Sum_probs=145.5

Q ss_pred             CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec--C------------------CCCCeeEEEEecCCCcEEEEE
Q 001258          820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM--P------------------PPPAATFLAFHPQDNNIIAIG  878 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~--~------------------~~~~i~~l~~s~~d~~~la~g  878 (1113)
                      ...+++++++++++.++. ++.|..|+..+++.. .+.  .                  ....+..+++.+++++ |.++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            456789999998677776 789999998765432 221  0                  0134788999963454 4445


Q ss_pred             ecCCcEEEEEcccceeeeeec----c-cccCeEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCc
Q 001258          879 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE  935 (1113)
Q Consensus       879 ~~dg~v~iwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~L~s~s~-----------------D~~v~iwd~~~~~  935 (1113)
                      ...+.|..+|..+++. ..+.    + .......+++.+ +|++.++-..                 ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5555688888776542 2221    1 123578899999 9988776543                 3668888876644


Q ss_pred             cccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccce--eeccccCCCCCCeeEEEECCCCCEEE
Q 001258          936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVY 1011 (1113)
Q Consensus       936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~ 1011 (1113)
                      ...  .....       .....++++|+|+.|+++  ..+.|.+|++.+...  ...+..  ..+ ...++++++|.+.+
T Consensus       177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSCEEE
T ss_pred             EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCCCCEEE
Confidence            211  11111       134679999999877664  567899999875321  111111  123 78899999998766


Q ss_pred             EEeC----------CCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1012 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1012 s~~~----------Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +...          .+.|.++|.. ++.+..+..    +.+. ...+..  +++.  +++++++....+.|..+++....
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~----~~g~~~~~~~~--~~~~--~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL----PPPFAGEHFEQ--IQEH--DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC----CTTTTTSCCCE--EEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred             EecCcccccccCCCccEEEEECCC-CCEEEEEEC----CCCCccccceE--EEEe--CCEEEEeecCCCceEEEeccccc
Confidence            6544          4678888864 777766652    2121 122333  4442  56666666678899999876443

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.38  E-value=3.2e-05  Score=77.74  Aligned_cols=199  Identities=11%  Similarity=0.115  Sum_probs=129.0

Q ss_pred             eeeeecCCCC--CeeEEEEecCCCcEEEEEecCC--cEEEEEcccceeeeeecccccC-eEEEEEcCCCCEEEEEeCCCc
Q 001258          851 TMATFMPPPP--AATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ  925 (1113)
Q Consensus       851 ~~~~~~~~~~--~i~~l~~s~~d~~~la~g~~dg--~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~L~s~s~D~~  925 (1113)
                      .+.++ .|..  -...+.|++  +.++.+.+.+|  .|+++|+.+++.+..+.-.... --.+++. +++..+..-.++.
T Consensus        11 v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X           11 VVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             EEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            44555 3544  366899985  56667666654  8999999999998877543221 1234443 2334444557899


Q ss_pred             EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccceeeccccCCCCC---CeeEE
Q 001258          926 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHA 1001 (1113)
Q Consensus       926 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~~~~~~~~~h~~---~v~~l 1001 (1113)
                      +.+||.++.+.......    +.       ....+.+|+..|+++ .++.|.++|..+.+.+..+....+..   .++.+
T Consensus        87 v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeL  155 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNEL  155 (243)
T ss_dssp             EEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred             EEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceee
Confidence            99999998665432221    11       234455778877775 56789999999999888877543333   34556


Q ss_pred             EECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC----c-ccCccceEEEEeCCCCCEEEEEe
Q 001258         1002 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG----V-SSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus      1002 ~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g----h-~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      .+. +|+..+....+..|.+.|..+++.+..+......+..    + ...| ...+++.|..++++++|-
T Consensus       156 e~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~v-lNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          156 EWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDV-LNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSC-EEEEEEETTTTEEEEEET
T ss_pred             EEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCc-eEEEEEcCCCCEEEEECC
Confidence            655 6765555546789999999999999998865443322    1 1223 236999996555566653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.37  E-value=0.00026  Score=76.19  Aligned_cols=244  Identities=13%  Similarity=0.060  Sum_probs=142.1

Q ss_pred             CCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       347 ~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      .+.++...+........++|+++|+ |+++-..++.|..||...+. ..     .+.               -......+
T Consensus        20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~-----~~~---------------~~~~p~gi   77 (306)
T 2p4o_A           20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QI-----HAT---------------VEGKVSGL   77 (306)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EE-----EEE---------------CSSEEEEE
T ss_pred             CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EE-----EEe---------------CCCCceeE
Confidence            3455566665557889999999998 67776678999999987532 21     111               12368899


Q ss_pred             EEcCCCCeEEEEeCC-C-eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce-ee
Q 001258          427 IWSPDGSLFGVAYSR-H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY  503 (1113)
Q Consensus       427 ~~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~  503 (1113)
                      +++++|+++++.... + .|..+|..+++.. .+..+ ........++..+++.  .+++...++.|.++|..+++. +.
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence            999999976665433 2 4666777777643 22222 1222334555555554  456666688899999765431 21


Q ss_pred             Eee---------ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          504 IFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       504 ~~~---------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ...         +.-.....+  +++. +.+.++-...+.|..+++.......     ...+.. .+             
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~-------------  211 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ-------------  211 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred             EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence            111         111223444  3332 2355555667889999887421110     000000 00             


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC---CCCCEEEEEECC
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTND  639 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~d  639 (1113)
                      .....++++++|+.+++....+.|.+++.. ++...............+++|.   |+++.|++++..
T Consensus       212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence            122336677777766666678899999975 6553322222223457899998   888877777654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.36  E-value=4.2e-05  Score=76.81  Aligned_cols=186  Identities=9%  Similarity=0.089  Sum_probs=123.0

Q ss_pred             CCccEEEEecCCCEEEEEe-C--CeEEEEECCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258          819 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  894 (1113)
                      .....+.|+. +.+..+.+ +  +.|+++|+.+++.++.+...... -..+++.  ++++....-.++.+.+||..+.+.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            3456888986 44444444 3  48999999999998887643321 1334443  456666667889999999999999


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  973 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~  973 (1113)
                      +.++..-. .=.+|+  +|+..|+.+..++.|.++|..+.+......... .+..  ...+..+.+. +|+..+.. ...
T Consensus        98 ~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           98 RARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTTT
T ss_pred             EEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCCC
Confidence            99887533 224554  567777766778899999998866543222211 1100  0123344544 66655555 677


Q ss_pred             eEEEEeCCccceeeccccCC-----------CCCCeeEEEECCCCCEEEEEe
Q 001258          974 QLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1014 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~-----------h~~~v~~l~~s~dg~~l~s~~ 1014 (1113)
                      .|.+.|.++++.+..+...+           -..-.+.|+++|+++.|+..+
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            99999999999887765321           123568899999888777666

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.35  E-value=0.0002  Score=84.16  Aligned_cols=248  Identities=10%  Similarity=0.006  Sum_probs=146.7

Q ss_pred             CCEEEEEe-CCeEEEEECCCCceeeeecCCCC----Cee-EEEEecC--CCc-EEEEEec------CCcEEEEEccccee
Q 001258          830 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPP----AAT-FLAFHPQ--DNN-IIAIGMD------DSSIQIYNVRVDEV  894 (1113)
Q Consensus       830 ~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~----~i~-~l~~s~~--d~~-~la~g~~------dg~v~iwd~~~~~~  894 (1113)
                      +..+++++ ++.|.-+|..+++.+........    .+. ...+..+  +++ .+++++.      +|.|+-+|..+|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            34555565 89999999999998866543321    111 1122221  233 5666553      78999999999987


Q ss_pred             eeeecccccC-----------------------------------------eEEEEEcCCCCEEEEEeC-----------
Q 001258          895 KSKLKGHSKR-----------------------------------------ITGLAFSHALNVLVSSGA-----------  922 (1113)
Q Consensus       895 ~~~l~~h~~~-----------------------------------------V~~l~~s~d~~~L~s~s~-----------  922 (1113)
                      +-........                                         -..+++.++..++..+..           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            7654321000                                         013456666667766553           


Q ss_pred             ---------C----CcEEEEeCCCCccccccccccCCC-CCCCCCCCceEEEc-cCCc---EEEE-EcCCeEEEEeCCcc
Q 001258          923 ---------D----SQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFH-QDQI---HFLV-VHETQLAIFETTKL  983 (1113)
Q Consensus       923 ---------D----~~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~s-pdg~---~l~~-~~d~~v~v~d~~~~  983 (1113)
                               |    +.|..+|..+++..-......... .........-+... .+|+   .++. +.++.+.++|..+|
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG  356 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNG  356 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTC
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCC
Confidence                     2    579999999987653211111100 00000011112222 4674   4555 48899999999999


Q ss_pred             ceeeccccCCC-----------CC--------------------------------CeeEEEECCCCCEEEEEe------
Q 001258          984 ECVKQWVPRES-----------SA--------------------------------PITHATFSCDSQLVYACF------ 1014 (1113)
Q Consensus       984 ~~~~~~~~~~h-----------~~--------------------------------~v~~l~~s~dg~~l~s~~------ 1014 (1113)
                      +.+..+.....           ..                                ....++++|+..++++..      
T Consensus       357 ~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~  436 (582)
T 1flg_A          357 KLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKED  436 (582)
T ss_dssp             CEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEE
T ss_pred             CEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhccee
Confidence            98765443210           00                                012457787766665543      


Q ss_pred             ---------------------------CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258         1015 ---------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus      1015 ---------------------------~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                                                 .+|.|..||+.+++.+-+......   ...+   +  +..   .+.+++.++.
T Consensus       437 ~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g---~--~~t---agglvf~g~~  505 (582)
T 1flg_A          437 YWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAG---V--LAT---AGNLVFTGTG  505 (582)
T ss_dssp             EEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSC---C--EEE---TTTEEEEECT
T ss_pred             eecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---Cccc---c--eEe---CCCEEEEECC
Confidence                                       258899999999999877642111   1111   1  221   3568888999


Q ss_pred             CCcEEEEeccCCCccccCCCC
Q 001258         1068 DGGVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus      1068 Dg~v~vW~~~~~~~~~~~~~~ 1088 (1113)
                      ||.|+.||.++|+..|+..-+
T Consensus       506 dg~l~A~D~~tG~~lW~~~~~  526 (582)
T 1flg_A          506 DGYFKAFDAKSGKELWKFQTG  526 (582)
T ss_dssp             TSEEEEEETTTCCEEEEEECS
T ss_pred             CCcEEEEECCCCCEEEEecCC
Confidence            999999999999988776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.32  E-value=0.00014  Score=79.07  Aligned_cols=254  Identities=10%  Similarity=0.055  Sum_probs=140.3

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcc---ccc---ccccCCCcceEEEEEcC-C
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP---LQA---ALVKDPGVSVNRVIWSP-D  431 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~h~~~V~~l~~sp-d  431 (1113)
                      ....+++|+++|+ ++.++..++.|..||..+++...      +........   ...   .........+..+++.+ +
T Consensus        19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCC
Confidence            4567889999998 47778889999999987654321      100000000   000   00000113578999998 5


Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeee-eec-ccCCeeEEEEcC-CCCeeEEEEecC-----------------CCcE
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI  491 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-~~~~~~l~s~s~-----------------d~~i  491 (1113)
                      |+ |.++...+.|..+|..++.. ..+.. ..+ .......+++.+ +|.  +.++...                 ++.|
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence            65 44454445588888776532 21111 111 123578899999 887  4444322                 3678


Q ss_pred             EEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCcEEEEEcCCCCC--eeeeeCCCCceEEEEEccCCCeE
Q 001258          492 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  568 (1113)
Q Consensus       492 ~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  568 (1113)
                      ..||..+++......+ ......++++  +++..|+ +-+..+.|..|++.....  ...+..... ..           
T Consensus       168 ~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~-----------  232 (322)
T 2fp8_A          168 IKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PG-----------  232 (322)
T ss_dssp             EEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EE-----------
T ss_pred             EEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CC-----------
Confidence            8899777764332222 2233456654  4555454 446678899998874211  111110011 23           


Q ss_pred             EeccccCceeEEEecCCCCEEEEEec----------CCcEEEEECCCCceEEEEccCCC--CCCcCeEEECCCCCEEEEE
Q 001258          569 YQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVS  636 (1113)
Q Consensus       569 ~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~  636 (1113)
                                .++++++|+..++...          .+.|..+|. .++.+..+....+  ...+.++++ .+++++++.
T Consensus       233 ----------gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~  300 (322)
T 2fp8_A          233 ----------NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGT  300 (322)
T ss_dssp             ----------EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEEC
T ss_pred             ----------CeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEee
Confidence                      3455555555555433          466888886 4677766654432  234666766 466666666


Q ss_pred             ECCCcEEEEEcCCC
Q 001258          637 TNDNGIKILATSDG  650 (1113)
Q Consensus       637 ~~dg~i~iwd~~~~  650 (1113)
                      ...+.|..+++...
T Consensus       301 ~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          301 LFHGSVGILVYDKK  314 (322)
T ss_dssp             SSCSEEEEEEC---
T ss_pred             cCCCceEEEecccc
Confidence            67788888887543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.32  E-value=0.0002  Score=77.10  Aligned_cols=229  Identities=10%  Similarity=0.048  Sum_probs=135.3

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC-C-cEEEEEcccceee
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-S-SIQIYNVRVDEVK  895 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-~v~iwd~~~~~~~  895 (1113)
                      .....++++++++++++.. ++.|..||.... ....+. .......+++++ +++++++.... + .|..+|..+++..
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~  108 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  108 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence            4577899999998666654 789999998753 333332 234688999999 77766654432 2 4777777777653


Q ss_pred             eeec-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc---cccc--cCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          896 SKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN---RFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       896 ~~l~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~---~~~~--~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      .... ........++..+++..+++-..++.|.++|..++.....   ....  ...+..   .....+  ++|+++|++
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv  183 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV  183 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred             EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence            2221 1222345566666665566555688888888765321100   0000  000110   122334  899987777


Q ss_pred             E--cCCeEEEEeCCc-cce--eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceee--ecCCCcccCCC
Q 001258          970 V--HETQLAIFETTK-LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RINPSAYLPAG 1042 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~-~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~--~~~~~~~~~~g 1042 (1113)
                      +  ..+.|..|++.. ++.  ...+..   ......++++++|++.++....+.|.+++.. ++...  .+.       .
T Consensus       184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~---~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~-------~  252 (306)
T 2p4o_A          184 SNTEKMLLLRIPVDSTDKPGEPEIFVE---QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE-------Q  252 (306)
T ss_dssp             EETTTTEEEEEEBCTTSCBCCCEEEEE---SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG-------G
T ss_pred             EeCCCCEEEEEEeCCCCCCCccEEEec---cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc-------c
Confidence            4  567899999875 322  111111   1346779999999887776667899999975 55532  222       0


Q ss_pred             cccCccceEEEEe---CCCCCEEEEEeCCC
Q 001258         1043 VSSNVHPLVIAAH---PQEPNEFALGLSDG 1069 (1113)
Q Consensus      1043 h~~~v~~i~~~~~---p~d~~~l~s~~~Dg 1069 (1113)
                        .--.+.+++|.   | |++.|..++..+
T Consensus       253 --~~~~p~~~a~~g~~~-d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 --GVIGSTAVAFGQTEG-DCTAIYVVTNGG  279 (306)
T ss_dssp             --TCTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred             --ccCCceEEEEecccC-CCCEEEEECCCC
Confidence              11234468887   5 556665555433

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.30  E-value=7.9e-05  Score=91.18  Aligned_cols=159  Identities=12%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             CcEEEEEc-CCCCeEEEEEecCC----cEEEEecCCc-ceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCC
Q 001258          360 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  433 (1113)
Q Consensus       360 ~V~~~~~s-pdg~~ll~~gs~dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  433 (1113)
                      .+...+|| |||++++++-+.+|    +|+++|+.+| +.+..                  .+.   .....++|||||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~~---~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KVS---GTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CEE---EECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------ccc---CceeeEEEecCCC
Confidence            67889999 99997555554444    4999999988 63211                  011   1234689999999


Q ss_pred             eEEEEeCC-----CeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCc-ee--e
Q 001258          434 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y  503 (1113)
Q Consensus       434 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s-~d~~i~iwd~~~~~-~~--~  503 (1113)
                      .|+....|     ..|.++++.++..... ..+. .+......+.|+|||+++++.+.+ ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            98887765     3688888887642211 1222 223456788999999964333322 24468888988763 22  3


Q ss_pred             Ee-eccCcCEEEEeeeecCCceEEEEEecC--C--cEEEEEcCC
Q 001258          504 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN  542 (1113)
Q Consensus       504 ~~-~~h~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~  542 (1113)
                      .+ .+......++.|+  .++.+++....+  +  .|..+++.+
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            33 3334444554432  222444444443  3  455566553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=8.5e-05  Score=90.92  Aligned_cols=195  Identities=12%  Similarity=0.061  Sum_probs=111.5

Q ss_pred             CccEEEEe-cCCCEEEEEe--CC----eEEEEECCCC-ceeee-ecCCCCCeeEEEEecCCCcEEEEEecC-----CcEE
Q 001258          820 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ  885 (1113)
Q Consensus       820 ~v~~l~~s-~~~~~l~~~s--dg----~i~vwd~~~~-~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~  885 (1113)
                      .+...+|| |||++||.+.  +|    +|+++|+.++ +.+.. +.   .....++|+| |++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence            56789999 9999999775  22    4999999988 63211 11   1135689999 77777766654     3688


Q ss_pred             EEEcccceee--eeec-ccccCeEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE
Q 001258          886 IYNVRVDEVK--SKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  959 (1113)
Q Consensus       886 iwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~L~s~s~---D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  959 (1113)
                      ++++.++...  ..+. .+.....++.|||||++|+..+.   ...|+++|+.++.... ....+..+..   .....+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence            8888775421  2222 22344678899999999887653   3468888887752111 0011111111   1233444


Q ss_pred             EccCCcEEEE-EcC-----CeEEEEeCCccceeec-cccCCCCCCeeEEEECCCCCEEEEEeCCCc--EEEEec
Q 001258          960 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDAT--VCVFSA 1024 (1113)
Q Consensus       960 ~spdg~~l~~-~~d-----~~v~v~d~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~--v~vwd~ 1024 (1113)
                      |+. |..|+. +..     ..|..+++.++..... +........+..+.+. .+.++++...|+.  |.++++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            433 555544 432     2677777765322222 2211112245566665 3445666777776  455564

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.24  E-value=0.00057  Score=69.83  Aligned_cols=202  Identities=9%  Similarity=0.064  Sum_probs=126.0

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      -.+.+..++|+|++..|+++...++.|...|.. ++.+....                 +.+. .....|++.+++.+++
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g~-~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDFV-KDLETIEYIGDNQFVI   85 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSSC-SSEEEEEECSTTEEEE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCCC-CChHHeEEeCCCEEEE
Confidence            346899999999988778778888999999988 77665422                 2222 4578889999998777


Q ss_pred             EEeCCCeEEEEEccCCceee--eeeee----ecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCceeeEee-
Q 001258          437 VAYSRHIVQIYSYHGGDEVR--QHLEI----DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE-  506 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~--~~~~l----~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~---~~~~~~~~~-  506 (1113)
                      +.-.++.+.++++.....+.  ....+    .........|+|+|+++.+  .++.......||.+.   .+..+..+. 
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L--~va~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTF--WFFKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEE--EEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEE--EEEECcCCceEEEEcccccCCceeeecc
Confidence            76667889999887654322  11111    1234567899999999853  333333333444433   112222221 


Q ss_pred             ------ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCC---------CceEEEEEccCCCeEEec
Q 001258          507 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG---------RWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       507 ------~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~v~~~~~s~~~~~~~~~  571 (1113)
                            .+...+.++++++.. +.+++....++.+..+|... .....+....         .....+            
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~t-g~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGi------------  229 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQK-NTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGV------------  229 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETTT-TEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEE------------
T ss_pred             hhhccccccCCceeEEEcCCC-CeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCee------------
Confidence                  123456788888754 57777777888898888763 3333332221         133444            


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEEC
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  603 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  603 (1113)
                               +++++|+ |+..++.+.++++..
T Consensus       230 ---------a~d~~G~-lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          230 ---------AMDASGN-IYIVSEPNRFYRFTP  251 (255)
T ss_dssp             ---------EECTTCC-EEEEETTTEEEEEEC
T ss_pred             ---------EECCCCC-EEEEcCCceEEEEEe
Confidence                     4455544 666687777777754

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.23  E-value=0.00041  Score=70.89  Aligned_cols=217  Identities=10%  Similarity=0.095  Sum_probs=131.9

Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc-cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001258          854 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       854 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                      .+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+.- -....-+|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4455556799999999666777778889999999988 887777632 12457889999998877776677889999887


Q ss_pred             CCcccc-ccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCc---cceeecc-----ccCCCCCCeeEEE
Q 001258          933 GWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQW-----VPRESSAPITHAT 1002 (1113)
Q Consensus       933 ~~~~~~-~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~---~~~~~~~-----~~~~h~~~v~~l~ 1002 (1113)
                      ...... ...................++|+|++..|.++ ......+|.+..   ...+...     ....+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            644211 11111111112223457899999999777774 333344544431   1111111     1112345678999


Q ss_pred             ECCCCCE-EEEEeCCCcEEEEecCCCceeeecCCCcccCCCc-ccCccceEEEEeCCCCCEEEEEeCCCcEEEEe
Q 001258         1003 FSCDSQL-VYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1075 (1113)
Q Consensus      1003 ~s~dg~~-l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh-~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~ 1075 (1113)
                      +.|.... ++.......+.++|.. ++.+..+.+..... +- ..-..+--++|.+ +|++.++ ++-+-++++.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence            9996655 4445556778889966 55666665332110 10 0112333588888 6775555 6666555554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.21  E-value=0.0013  Score=70.96  Aligned_cols=206  Identities=6%  Similarity=-0.032  Sum_probs=129.7

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ...+.+++|++.+..|..+.  ++.|..+++.+    ......+.........+++++.++++.++-...+.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578899999887777776  68999999876    2222223323345688999874566666666788999999875


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ......+........++++.|.+..|..+...  +.|...+++......  ... ...     .....+++++++..|+.
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~-~~~-----~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT-ENI-----QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EEC-SSC-----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEE-CCC-----CCceEEEEeccCCEEEE
Confidence            43332333334567899999877766655543  678888876532111  111 111     24578999998877776


Q ss_pred             E--cCCeEEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeec
Q 001258          970 V--HETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +  ..+.|..+|+.... ...+.. .........+++. .+.++++-...+.|..++..+++.+..+
T Consensus       181 ~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            4  55789999987433 233221 1123456788884 3555555556788999998777665554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.21  E-value=0.00096  Score=72.99  Aligned_cols=238  Identities=11%  Similarity=0.025  Sum_probs=147.3

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      ..+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+.
T Consensus        35 ~~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  112 (349)
T 3v64_C           35 RRSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  112 (349)
T ss_dssp             SSCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred             CCccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe
Confidence            345666555 456666666778888887655544443 344588999998456666665677899999988655433333


Q ss_pred             ccccCeEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC-CeE
Q 001258          900 GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQL  975 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L-~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d-~~v  975 (1113)
                      .......++++.+.+..| ++-...+.|.+.+++.....  ...  ..+ .   .....++++|.+..|+.+  .. +.|
T Consensus       113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~--~l~--~~~-l---~~P~~iavdp~~g~ly~td~~~~~~I  184 (349)
T 3v64_C          113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLL--WQS-L---EKPRAIALHPMEGTIYWTDWGNTPRI  184 (349)
T ss_dssp             SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEE--CTT-C---SCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred             CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE--EEE--eCC-C---CCcceEEEecCcCeEEEeccCCCCEE
Confidence            333456789998755544 55556788999998764321  111  111 1   245789999976666654  33 678


Q ss_pred             EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEE
Q 001258          976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAA 1054 (1113)
Q Consensus       976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~ 1054 (1113)
                      ..++.+..... .+.. ..-.....|+|+|++..|+.+. ..+.|..++++.......+.       ..-....  .+++
T Consensus       185 ~r~~~dG~~~~-~~~~-~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~-------~~~~~P~--giav  253 (349)
T 3v64_C          185 EASSMDGSGRR-IIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS-------QGLPHPF--AITV  253 (349)
T ss_dssp             EEEETTSCSCE-ESCC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SSCSSEE--EEEE
T ss_pred             EEEeCCCCCcE-EEEE-CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe-------CCCCCce--EEEE
Confidence            88887654332 2221 1244678999998777766655 45779999987543322222       1112223  3444


Q ss_pred             eCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1055 HPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1055 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .  ++.++++-...+.|...+..+|+
T Consensus       254 ~--~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          254 F--EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             E--CCEEEEecCCCCeEEEEEccCCC
Confidence            3  45566666677888888866666

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.17  E-value=0.0019  Score=70.55  Aligned_cols=205  Identities=11%  Similarity=0.005  Sum_probs=132.4

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ..+..++|++.+..|....  .+.|..+++........+.........+++.+.++++.++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3478899998877777776  68899999987654444433334567899997556666666667899999987543333


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEe-CC-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  972 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s-~D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d  972 (1113)
                      .+...-....++++.|.+..|..+. .. +.|...+++......  ..  ..+.    .....++++|++..|..+  ..
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~----~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHL----FWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SC--CSSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCC----CCcceEEEeCCCCEEEEEECCC
Confidence            3334445678999998666655554 34 678888877632211  11  1111    235789999987777764  56


Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +.|..+++..... ..+.. ........+++ .++.+.++-...+.|..++..+|+....+.
T Consensus       225 ~~I~~~~~dG~~~-~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          225 HVIERANLDGSHR-KAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TEEEEEETTSCSC-EEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEeCCCCce-EEEEe-CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            7899999875432 22221 22446678888 345555555567888888866666555443

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.17  E-value=0.0035  Score=67.82  Aligned_cols=279  Identities=11%  Similarity=0.063  Sum_probs=151.3

Q ss_pred             cCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCC
Q 001258          751 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  830 (1113)
Q Consensus       751 ~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~  830 (1113)
                      ...+.++.|.+++..++ ++..|.+... .+.+              +-|....       .........+.++.+++ +
T Consensus        35 ~~~~~~v~~~~~~~~~~-~G~~g~i~~s-~DgG--------------~tW~~~~-------~~~~~~~~~~~~i~~~~-~   90 (327)
T 2xbg_A           35 TATILDMSFIDRHHGWL-VGVNATLMET-RDGG--------------QTWEPRT-------LVLDHSDYRFNSVSFQG-N   90 (327)
T ss_dssp             SSCEEEEEESSSSCEEE-EETTTEEEEE-SSTT--------------SSCEECC-------CCCSCCCCEEEEEEEET-T
T ss_pred             CCcEEEEEECCCCcEEE-EcCCCeEEEe-CCCC--------------CCCeECC-------CCCCCCCccEEEEEecC-C
Confidence            34688899987777666 5566654321 1100              0121110       00001244678889876 5


Q ss_pred             CEEEEEeCCeEEEEECCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee-ecccccCeE
Q 001258          831 SYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT  906 (1113)
Q Consensus       831 ~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~-l~~h~~~V~  906 (1113)
                      ..++++..+.|.. ..+.++.-....   .+...+..+.+.+ ++.+++++ .+|.|+. ....|+.-.. ..++...+.
T Consensus        91 ~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~  166 (327)
T 2xbg_A           91 EGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMR  166 (327)
T ss_dssp             EEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEE
T ss_pred             eEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceE
Confidence            5566666775544 333343322222   2234577888876 66666655 4565432 1222322222 234556789


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCcccee
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV  986 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~  986 (1113)
                      ++++.+++.+++.+...+..+-+|-. +.  .........     ...+..+++++++..++++.++.+.+.+.+.++.-
T Consensus       167 ~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--tW~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW  238 (327)
T 2xbg_A          167 NLNRSPSGEYVAVSSRGSFYSTWEPG-QT--AWEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW  238 (327)
T ss_dssp             EEEECTTSCEEEEETTSSEEEEECTT-CS--SCEEEECCS-----SSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE
T ss_pred             EEEEcCCCcEEEEECCCcEEEEeCCC-CC--ceeECCCCC-----CCccceeEECCCCCEEEEeCCceEEEecCCCCCee
Confidence            99999998888766544433333321 11  111111111     13567888999999888888888877653434433


Q ss_pred             eccccC--CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          987 KQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       987 ~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                      ......  .+...+.++.+.+++.+++++. +|.| .+..+.|+.-..+..    +..+...+..  +.|.+  +..++.
T Consensus       239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~----~~~~~~~~~~--v~~~~--~~~~~~  308 (327)
T 2xbg_A          239 GELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVD----VKKVPSNFYK--ILFFS--PDQGFI  308 (327)
T ss_dssp             CCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGG----GTTSSSCCCE--EEEEE--TTEEEE
T ss_pred             EeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCc----cCCCCCCeEE--EEEEC--CCceEE
Confidence            322211  1234688999998887766654 7777 445555654433321    0012234443  55554  346777


Q ss_pred             EeCCCcEEEEe
Q 001258         1065 GLSDGGVHVFE 1075 (1113)
Q Consensus      1065 ~~~Dg~v~vW~ 1075 (1113)
                      ++.+|.|.-++
T Consensus       309 ~G~~G~i~~~~  319 (327)
T 2xbg_A          309 LGQKGILLRYV  319 (327)
T ss_dssp             ECSTTEEEEEC
T ss_pred             EcCCceEEEEc
Confidence            78899876665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.14  E-value=0.0012  Score=73.52  Aligned_cols=205  Identities=10%  Similarity=-0.010  Sum_probs=133.3

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ..+..++|++.+..|....  .+.|..+++........+.........+++.+.++++.++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4578899998777777765  68899999987654444443334567889997556666666667789888876543333


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  972 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d  972 (1113)
                      .+........+|++.|.+..|..+.. . +.|...+++......  ..  ..+.    .....++++|++..|+.+  ..
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~--~~~~----~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IA--DTHL----FWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE--CSSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EE--ECCC----CCeeeEEEeCCCCEEEEEECCC
Confidence            33334466799999987776665543 3 678888876532211  11  1111    235789999887777764  56


Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +.|..+++...... .+.. ........+++ ..+.++++-...+.|..++..+|+....+.
T Consensus       268 ~~I~~~d~dG~~~~-~~~~-~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          268 HVIERANLDGSHRK-AVIS-QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TEEEEECTTSCSCE-EEEC-SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEeCCCCeeE-EEEE-CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            78999998754332 2221 22446678888 445555565667889999877777666554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.14  E-value=0.0013  Score=70.92  Aligned_cols=229  Identities=10%  Similarity=0.044  Sum_probs=139.7

Q ss_pred             EEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---ceeee-eecccccCeEE
Q 001258          832 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKS-KLKGHSKRITG  907 (1113)
Q Consensus       832 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---~~~~~-~l~~h~~~V~~  907 (1113)
                      +|+.+....|+..|+.+.+....+. .......++|++.++.++.+-..++.|+.+++..   +.... .+........+
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            5666667789999998876555444 3456889999984555666666678999999875   12222 23323345688


Q ss_pred             EEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cC-CeEEEEeCCcc
Q 001258          908 LAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLAIFETTKL  983 (1113)
Q Consensus       908 l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d-~~v~v~d~~~~  983 (1113)
                      +++.+.+. +.++-...+.|.+.+++.....  .... ...     .....++++|.+..|+.+  .. +.|..++.+..
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~--~~~~-~~~-----~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~  153 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK--TLFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  153 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEE--EEEE-CTT-----CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceE--EEEE-CCC-----CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC
Confidence            99986554 4455566788999998763221  1111 111     245789999976666553  22 67888887543


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
                       ....+.. ..-.....+++++++..|+.+. ..+.|.++|++.... ..+..      .....-.+..++..  ++.++
T Consensus       154 -~~~~~~~-~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~------~~~~~~~P~giav~--~~~ly  222 (316)
T 1ijq_A          154 -DIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILE------DEKRLAHPFSLAVF--EDKVF  222 (316)
T ss_dssp             -CEEEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE------CTTTTSSEEEEEEE--TTEEE
T ss_pred             -CeEEEEE-CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEee------cCCccCCcEEEEEE--CCEEE
Confidence             3332221 1245678999999877776655 457899999975332 22210      00011123335543  35566


Q ss_pred             EEEeCCCcEEEEeccCCC
Q 001258         1063 ALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1063 ~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ++-...+.|..++..+++
T Consensus       223 ~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          223 WTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEETTTTEEEEEETTTCC
T ss_pred             EEECCCCeEEEEeCCCCc
Confidence            666677889999887776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.12  E-value=0.00021  Score=86.16  Aligned_cols=238  Identities=11%  Similarity=0.009  Sum_probs=128.3

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEe-cC-----CcEEEEEc
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNV  889 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~-~d-----g~v~iwd~  889 (1113)
                      ....++++..+++++++|+  ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+     ..+.+||.
T Consensus       243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~  321 (656)
T 1k3i_A          243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSP  321 (656)
T ss_dssp             CSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEET
T ss_pred             CccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCC
Confidence            3344678889999999997  46899999887543322111111 224556666 788999998 44     47999999


Q ss_pred             ccceeeee--e--cccccCeEEEEEcCCCCEEEEEeCCC---------cEEEEeCCCCccccccccccCCC-C--CCCCC
Q 001258          890 RVDEVKSK--L--KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTG-R--TPTAQ  953 (1113)
Q Consensus       890 ~~~~~~~~--l--~~h~~~V~~l~~s~d~~~L~s~s~D~---------~v~iwd~~~~~~~~~~~~~~~~~-~--~~~~~  953 (1113)
                      .+.+-...  .  ......-....+..++..++.++.|+         .+..||..+..-..  ....... +  .....
T Consensus       322 ~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~  399 (656)
T 1k3i_A          322 SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAM  399 (656)
T ss_dssp             TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCB
T ss_pred             CCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCC
Confidence            87542211  0  00000000012234555556665554         46778877643211  1111100 0  00001


Q ss_pred             CCceEEEc-cCCcEEEEE-cCC-----------eEEEEeCCccceeeccccC-CCCCCeeEEEECCCCCEEEEEeCC---
Q 001258          954 SDTRVQFH-QDQIHFLVV-HET-----------QLAIFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLD--- 1016 (1113)
Q Consensus       954 ~i~~~~~s-pdg~~l~~~-~d~-----------~v~v~d~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~D--- 1016 (1113)
                      .-..+.|. .+++.++++ .++           .+.+||..+.+........ .....-.+++..|+|++++.|+.+   
T Consensus       400 ~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~  479 (656)
T 1k3i_A          400 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  479 (656)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             CCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCc
Confidence            12344444 367777774 321           6788888877654432001 112233456778899999999865   


Q ss_pred             --------CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258         1017 --------ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus      1017 --------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                              ..+.+||..+.+... +.........|+      +....| ||++++.|+.
T Consensus       480 ~~~~~~~~~~v~~ydp~t~~W~~-~~~~~~~R~~hs------~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          480 PFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYHS------ISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             TTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTTE------EEEECT-TSCEEEEECC
T ss_pred             CcCCCCcccceEEEcCCCCceee-cCCCCCcccccc------HhhcCC-CcEEEecCCC
Confidence                    468999998866442 211110011221      133345 7899999885

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.08  E-value=0.00082  Score=75.78  Aligned_cols=248  Identities=8%  Similarity=0.018  Sum_probs=143.7

Q ss_pred             CccEEEEecC--CCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC---C-cEEEEEcccc
Q 001258          820 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD  892 (1113)
Q Consensus       820 ~v~~l~~s~~--~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~v~iwd~~~~  892 (1113)
                      ....++++|+  +..|.++. .+.|+.+|..++..... .........+++++ +++++++-...   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4678999984  45555554 58899999987665443 33455689999999 77754443311   1 2333332221


Q ss_pred             ee-eeeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          893 EV-KSKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       893 ~~-~~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      .. ...+. .......+++++ +|.++++-..++.|+.++..++..... ......  .   .....++|+|+|.+|+++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence            11 01121 234457789999 677666666778899999876543111 111111  1   123469999999966664


Q ss_pred             --cCCeEEEEeCC--cccee--ecccc----CC---------CCCCeeEEEE---------CCCCCEEEEEeCCCcEEEE
Q 001258          971 --HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1022 (1113)
Q Consensus       971 --~d~~v~v~d~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------s~dg~~l~s~~~Dg~v~vw 1022 (1113)
                        ..+.|..++..  ++...  ..+..    .+         .-.....+++         .++|.+.++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              56789987765  33211  11110    01         1234677999         7777777776677889999


Q ss_pred             ecCCCceeeecCCCc----ccCCC-c--c-cCccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1023 SAANLKLRCRINPSA----YLPAG-V--S-SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1023 d~~~~~~~~~~~~~~----~~~~g-h--~-~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      +. +|..........    -...| .  . .--.|..+++.|.+|+++++-...+.|+.++++
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            85 564443322110    00001 0  0 012355688886577777776667788887764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.08  E-value=0.0026  Score=70.91  Aligned_cols=208  Identities=6%  Similarity=-0.044  Sum_probs=133.3

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ...+.+++|++.+..|..+.  .+.|+.+++...    .....+.........+++.+.++++.++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999999888887776  688999998752    222333334456788999974566666666778999999876


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~--D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ......+........+|++.|.+.+|..+..  .+.|...+++......  ..  ..+.    .....+++++++..|+.
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~--~~~l----~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TENI----QWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EE--CSSC----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EE--ECCC----CceEEEEEEeCCCEEEE
Confidence            5443334434456889999997666665553  3678888887633211  11  1110    24578999998887777


Q ss_pred             E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +  ..+.|..+|++...................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            5  5678999998754432222211223456677773 34445555566889999987777665554

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.07  E-value=0.011  Score=63.97  Aligned_cols=194  Identities=12%  Similarity=0.057  Sum_probs=113.1

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecCCcEEE-EEc--cccee
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV  894 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~i-wd~--~~~~~  894 (1113)
                      ..+..+++.++++.++++.++.|.. ..+.++.-.. .......+..+++.+ ++.+++++. +|.++. +|-  .+.+.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence            3466788877887777776665432 2222332222 233455788999999 788887665 454444 332  23333


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCe
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  974 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~  974 (1113)
                      +.  ......+..+++.++++.++ ++.+|.+++++.+.++.  .......  .......+..+++.+++..++++.++.
T Consensus       199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~  271 (327)
T 2xbg_A          199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA  271 (327)
T ss_dssp             EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred             CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence            32  23456788999999987665 45678777764332221  1111111  000012467888999998888888887


Q ss_pred             EEEEeCCccceeecccc-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          975 LAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      + .+..+.|+.-..... ..+...+.++.|.++++ +++++.+|.|.-++-
T Consensus       272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT  320 (327)
T ss_dssp             E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred             E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence            7 445555543332221 12245678899986655 556667898776653

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=0.00083  Score=75.77  Aligned_cols=246  Identities=9%  Similarity=0.041  Sum_probs=141.1

Q ss_pred             CccEEEEec-CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CC----cEEEEEcccc
Q 001258          820 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD  892 (1113)
Q Consensus       820 ~v~~l~~s~-~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg----~v~iwd~~~~  892 (1113)
                      ....++++| ++..|.++. .+.|+.+|+.++...... ........++|++ ++++|.++.. ++    .+.+++. .+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-ES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-GG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-CC
Confidence            467899998 456666665 588999999876544333 3455688999999 7775555543 22    3444443 33


Q ss_pred             eee--eeecccccCeEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          893 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       893 ~~~--~~l~~h~~~V~~l~~s~-d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ...  ..+. ......+++++| ++.++++-..++.|..++.+++...  ........     .....++|+|+|++|++
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            222  2222 123467889999 6777777667888999998864321  11111111     23578999999996666


Q ss_pred             E--cCCeEEEEeCCc--cce--eecccc----CCC---------CCCee-EEEEC--------CCCCEEEEEeCCCcEEE
Q 001258          970 V--HETQLAIFETTK--LEC--VKQWVP----RES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~--~~~--~~~~~~----~~h---------~~~v~-~l~~s--------~dg~~l~s~~~Dg~v~v 1021 (1113)
                      +  ..+.|..++...  +..  +..+..    .+.         -.... .++..        ++|.+.++=...+.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  567888887653  221  111110    000         11223 45553        34555555556678999


Q ss_pred             EecCCCceeeecCCCcccCCCc-cc-------CccceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1022 FSAANLKLRCRINPSAYLPAGV-SS-------NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1022 wd~~~~~~~~~~~~~~~~~~gh-~~-------~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      ++ .+|..............|. .+       --.|..+++.|.++.++++-...+.|+..+++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            88 4565443322100000010 00       12455688888556666666666788877754

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.06  E-value=0.0021  Score=71.65  Aligned_cols=230  Identities=10%  Similarity=0.062  Sum_probs=143.5

Q ss_pred             CEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc----eeeeeecccccCeE
Q 001258          831 SYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----EVKSKLKGHSKRIT  906 (1113)
Q Consensus       831 ~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~----~~~~~l~~h~~~V~  906 (1113)
                      .+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++...    .....+........
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            46666778899999998765544443 45678999999855555555556788999988752    22233333445678


Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc---CCeEEEEeCCc
Q 001258          907 GLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTK  982 (1113)
Q Consensus       907 ~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~---d~~v~v~d~~~  982 (1113)
                      +|++.+. +++.++-...+.|.+.+++......  ... ...     .....+++.|.+.+|+.+.   .+.|...+++.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~--l~~-~~~-----~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG  234 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR-ENG-----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  234 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEE--EEE-CSS-----CCEEEEEEETTTTEEEEEECSSSCCEEEEETTS
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEE--EEe-CCC-----CCcceEEEecccCeEEEEeCCCCCEEEEEeCCC
Confidence            9999874 4455555567889999987643211  111 111     2357899999766666542   46788888865


Q ss_pred             cceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCE
Q 001258          983 LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNE 1061 (1113)
Q Consensus       983 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~ 1061 (1113)
                      ........  ..-.....|++++++..|+.+. ..+.|..+|++.......+.       +....-.+..++..  .+.+
T Consensus       235 ~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~l~~P~gl~v~--~~~l  303 (400)
T 3p5b_L          235 VDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-------DEKRLAHPFSLAVF--EDKV  303 (400)
T ss_dssp             CSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEE-------CSSTTSSEEEEEEE--TTEE
T ss_pred             CccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEe-------CCCCCCCCEEEEEe--CCEE
Confidence            43322221  2235688999999888777665 45789999987644332221       11111223345543  3456


Q ss_pred             EEEEeCCCcEEEEeccCCC
Q 001258         1062 FALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1062 l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +++-...+.|..++..+|+
T Consensus       304 ywtd~~~~~V~~~~~~~G~  322 (400)
T 3p5b_L          304 FWTDIINEAIFSANRLTGS  322 (400)
T ss_dssp             EEEESSSCSEEEEESSSCC
T ss_pred             EEecCCCCeEEEEEcCCCC
Confidence            6676677889999977776

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00034  Score=84.36  Aligned_cols=244  Identities=11%  Similarity=0.022  Sum_probs=137.7

Q ss_pred             cEEEEec-CCCEEEEEe-CC-----------eEEEEECCCCcee--eeec-CCCCCeeEEEEecCCCcEEEEEec-CCcE
Q 001258          822 PCFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFM-PPPPAATFLAFHPQDNNIIAIGMD-DSSI  884 (1113)
Q Consensus       822 ~~l~~s~-~~~~l~~~s-dg-----------~i~vwd~~~~~~~--~~~~-~~~~~i~~l~~s~~d~~~la~g~~-dg~v  884 (1113)
                      .++++.+ +++.++.|+ ++           .+.+||..+.+..  ..+. .+.....++++.. +++++++|+. +..+
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v  267 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKT  267 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCce
Confidence            3567777 888888876 21           5889998876532  2222 2333345677777 8899999984 4589


Q ss_pred             EEEEcccceeeeeecccccCe-EEEEEcCCCCEEEEEe-CC-----CcEEEEeCCCCccccccc---cccCCCCCCCCCC
Q 001258          885 QIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQS  954 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~L~s~s-~D-----~~v~iwd~~~~~~~~~~~---~~~~~~~~~~~~~  954 (1113)
                      .+||..+.+-...-..+..+. .+++..+++++++.|+ .+     ..+.+||..+.+-.....   .......      
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~------  341 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD------  341 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC------
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc------
Confidence            999988754322211122222 2455667999999998 44     568999998743211000   0011110      


Q ss_pred             CceEEEccCCcEEEE----------EcCCeEEEEeCCccceeeccccCC-------CCCCeeEEEEC-CCCCEEEEEeCC
Q 001258          955 DTRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLD 1016 (1113)
Q Consensus       955 i~~~~~spdg~~l~~----------~~d~~v~v~d~~~~~~~~~~~~~~-------h~~~v~~l~~s-~dg~~l~s~~~D 1016 (1113)
                       ....+..+++.++.          +....+..||..+...........       ....-.++.|. .++++++.|+.+
T Consensus       342 -~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~  420 (656)
T 1k3i_A          342 -KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  420 (656)
T ss_dssp             -TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             -ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence             00112233333333          234567889988776433221110       01122444453 478888888854


Q ss_pred             C-----------cEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-----------CcEEEE
Q 001258         1017 A-----------TVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1074 (1113)
Q Consensus      1017 g-----------~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----------g~v~vW 1074 (1113)
                      +           .|.+||..+........  ...+   ...... ..+..| ++++++.|+.+           ..+.+|
T Consensus       421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~mp---~~R~~~-~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          421 DYQDSDATTNAHIITLGEPGTSPNTVFAS--NGLY---FARTFH-TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECT--TCCS---SCCBSC-EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             CCCCCCcCCcceEEEcCCCCCCCeeEEcc--CCCC---CCcccC-CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence            3           67888887765543220  0111   122221 234455 78899998865           568999


Q ss_pred             eccCCC
Q 001258         1075 EPLESE 1080 (1113)
Q Consensus      1075 ~~~~~~ 1080 (1113)
                      |+.+.+
T Consensus       494 dp~t~~  499 (656)
T 1k3i_A          494 VPEQDT  499 (656)
T ss_dssp             EGGGTE
T ss_pred             cCCCCc
Confidence            998765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.97  E-value=0.0032  Score=69.86  Aligned_cols=215  Identities=10%  Similarity=-0.036  Sum_probs=127.8

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      ..+.....+..++|.+.+..|+.+-...+.|..++...+....                   ++.........+++.+.+
T Consensus       110 ~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~-------------------~~~~~~~~p~glavd~~~  170 (386)
T 3v65_B          110 LLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE-------------------VVSTGLESPGGLAVDWVH  170 (386)
T ss_dssp             EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE-------------------EECSSCSCCCCEEEETTT
T ss_pred             EEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE-------------------EEeCCCCCccEEEEEeCC
Confidence            3444456789999998877777776677899999988654322                   111112245678898865


Q ss_pred             CeE-EEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCceeeEeeccCc
Q 001258          433 SLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEA  510 (1113)
Q Consensus       433 ~~l-as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~h~~  510 (1113)
                      ..| ++-...+.|.+.++.......   .+.........|++.|.+.. ++++-... +.|...++............-.
T Consensus       171 g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~  246 (386)
T 3v65_B          171 DKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHLF  246 (386)
T ss_dssp             TEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCS
T ss_pred             CeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCCC
Confidence            555 444556788888887543221   22333456789999998775 34444444 7888888654333222233344


Q ss_pred             CEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEE
Q 001258          511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  590 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  590 (1113)
                      ....+++++.. +.+.++-+..+.|..+|++.......+.........+++.                      .+..++
T Consensus       247 ~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~----------------------~~~ly~  303 (386)
T 3v65_B          247 WPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF----------------------EDSLYW  303 (386)
T ss_dssp             CEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE----------------------TTEEEE
T ss_pred             CeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE----------------------CCEEEE
Confidence            56788887543 3455666667889888876433322222222233334331                      122344


Q ss_pred             EEecCCcEEEEECCCCceEEEEc
Q 001258          591 AAGDDFSIKFWDMDSVQLLTSID  613 (1113)
Q Consensus       591 ~~~~dg~i~iwd~~~~~~~~~~~  613 (1113)
                      +-...+.|..++..+++.+..+.
T Consensus       304 td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          304 TDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEE
T ss_pred             eeCCCCeEEEEECCCCcceEEEc
Confidence            44566778888866666655554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.95  E-value=0.09  Score=64.41  Aligned_cols=494  Identities=12%  Similarity=0.049  Sum_probs=245.0

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  438 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  438 (1113)
                      ..|.++.. .+|.  |-.|+.+ -+..+|..+++....      .      . ..  ..-....|.++....+|.+.+. 
T Consensus       103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~------~------~-~~--~~l~~~~i~~i~~d~~g~lWig-  162 (758)
T 3ott_A          103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSF------D------T-RR--NGLPNNTIYSIIRTKDNQIYVG-  162 (758)
T ss_dssp             SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEE------C------H-HH--HCCSCSCEEEEEECTTCCEEEE-
T ss_pred             ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEe------c------c-CC--CCcCCCeEEEEEEcCCCCEEEE-
Confidence            35777755 4665  3445555 678888876543221      0      0 00  0112346889988888877664 


Q ss_pred             eCCCeEEEEEccCCceeeeeeeeecc----cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          439 YSRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       439 ~~d~~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      ..+| |..++..+++... . .....    ...|.++...+++..+++.+  . +-+..+|..+++......-....|.+
T Consensus       163 t~~G-l~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~i~~d~~~~~lWigt--~-~Gl~~~~~~~~~~~~~~~l~~~~i~~  236 (758)
T 3ott_A          163 TYNG-LCRYIPSNGKFEG-I-PLPVHSSQSNLFVNSLLEDTTRQCVWIGT--E-GYLFQYFPSTGQIKQTEAFHNNSIKS  236 (758)
T ss_dssp             ETTE-EEEEETTTTEEEE-E-CCCCCTTCSSCCEEEEEEETTTTEEEEEE--E-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred             eCCC-HhhCccCCCceEE-e-cCCCccccccceeEEEEEECCCCEEEEEE--C-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence            4444 7788877664321 1 11111    22488888887776433433  3 45888897766543221112345776


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      +.  .+.+|. |..|+.+ -+.+++..+..... +......         .    .+.....+.++..+.++. |-.|+.
T Consensus       237 i~--~d~~g~-lWigT~~-Gl~~~~~~~~~~~~-~~~~~~~---------~----~~l~~~~i~~i~~D~~g~-lWiGT~  297 (758)
T 3ott_A          237 LA--LDGNGD-LLAGTDN-GLYVYHNDTTPLQH-IIHDSRN---------I----QSLTNNIIWNIFADQEHN-IWLGTD  297 (758)
T ss_dssp             EE--ECTTCC-EEEEETT-EEEEECCTTSCCEE-ECCCTTC---------T----TSCSCSCEEEEEECTTCC-EEEEES
T ss_pred             EE--EcCCCC-EEEEeCC-ceeEEecCCCcEEE-EEcCCCC---------c----CcCCcCeEEEEEEcCCCC-EEEEeC
Confidence            66  344544 4445544 47777765533221 1110000         0    000111233344444443 445555


Q ss_pred             CCcEEEEECCCCceEEEEc-----cCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc-ceeccccccccccccC
Q 001258          595 DFSIKFWDMDSVQLLTSID-----ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTS  668 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  668 (1113)
                      .| +.++... .. ...+.     .......|.++.-..+|.+.+. +.+| +..++..++.. ....+           
T Consensus       298 ~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~-----------  361 (758)
T 3ott_A          298 YG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWY-----------  361 (758)
T ss_dssp             SS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEE-----------
T ss_pred             Cc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEe-----------
Confidence            56 5444322 11 11111     0111235677777777776654 4444 55555433210 00000           


Q ss_pred             CCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcc
Q 001258          669 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  748 (1113)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~  748 (1113)
                                                                                   ....     ...      .
T Consensus       362 -------------------------------------------------------------~~~~-----~~~------~  369 (758)
T 3ott_A          362 -------------------------------------------------------------RMGD-----KTY------P  369 (758)
T ss_dssp             -------------------------------------------------------------CTTC-----SSS------C
T ss_pred             -------------------------------------------------------------ccCC-----cCC------C
Confidence                                                                         0000     000      0


Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      .....|.++....+|+..+. +. +-+..|+.....+..            +....       .........|.++...+
T Consensus       370 l~~~~v~~i~~d~~g~lWig-t~-~GL~~~~~~~~~~~~------------~~~~~-------~~~~~~~~~v~~i~~d~  428 (758)
T 3ott_A          370 LSHNRIRHIYEDKEQQLWIA-TD-GSINRYDYATRQFIH------------YNIVD-------NTGTYNTNWTYYIFEDT  428 (758)
T ss_dssp             CSCSCEEEEEECTTSCEEEE-ET-TEEEEEETTTTEEEE------------EEEEC-------CC--CBSSSEEEEEECT
T ss_pred             CCCCceEEEEECCCCCEEEE-eC-CcHhhcCcCCCcEEE------------eecCC-------CcCCCCCceEEEEEEcC
Confidence            02345778888888875554 43 456667654322210            00000       00000234578888888


Q ss_pred             CCCEEEEEeCCeEEEEECCCC-----cee---eeec---C-CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          829 NDSYVMSASGGKISLFNMMTF-----KTM---ATFM---P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       829 ~~~~l~~~sdg~i~vwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      +|++.+...++.|.++|..+.     ...   ..+.   + ....|.++...+ +|++.+.++..+-|..+|..+++...
T Consensus       429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~  507 (758)
T 3ott_A          429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK  507 (758)
T ss_dssp             TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred             CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE
Confidence            887666444667888886531     111   1111   1 123488888887 67766533334568888988766443


Q ss_pred             eecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCC
Q 001258          897 KLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  973 (1113)
Q Consensus       897 ~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~  973 (1113)
                      ....   ....+.++....+|.+.+.. ..| +..++..+......   . ..+..  ...|.++... +|.. ..+.+.
T Consensus       508 ~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~~~-~g~l-Wi~t~~  577 (758)
T 3ott_A          508 LFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMTCV-KNSI-WVSTTN  577 (758)
T ss_dssp             ECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEE-EEEESS
T ss_pred             ecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEEEC-CCCE-EEECCC
Confidence            2211   13467888888888777654 455 88888766432211   1 11111  1346666653 6654 444456


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEEC-CCCCEEEEEeCCCcEEE
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCV 1021 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~v 1021 (1113)
                      .+..||..+.+...- ..  ....+....+. ++|. |+.|+.+|.+++
T Consensus       578 Gl~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl~~f  622 (758)
T 3ott_A          578 GLWIIDRKTMDARQQ-NM--TNKRFTSLLFDPKEDC-VYLGGADGFGIS  622 (758)
T ss_dssp             CEEEEETTTCCEEEC-----CCCCCSEEEEETTTTE-EEEECBSEEEEE
T ss_pred             CeEEEcCCCceeEEe-cC--CCCceeeeEEECCCCc-EEEecCCceEEE
Confidence            688899887765432 11  12233444444 4554 555677885544

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.91  E-value=0.0073  Score=63.91  Aligned_cols=197  Identities=8%  Similarity=0.152  Sum_probs=124.1

Q ss_pred             CCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecC---CCc---EEEEEec---CCcEEEEEcc--cceeee
Q 001258          829 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---DNN---IIAIGMD---DSSIQIYNVR--VDEVKS  896 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~la~g~~---dg~v~iwd~~--~~~~~~  896 (1113)
                      ...+++... .+.+.+||+ +++.++.+..  +.++.+..-|.   +++   ++++...   +++|.+|++.  +++ +.
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~  114 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ  114 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence            444544444 688999999 7888888864  56777776661   122   2333333   5799999874  333 44


Q ss_pred             eecc------cc-cCeEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCCCcc--ccccccccCCCCCCCCCCCceEEEccC
Q 001258          897 KLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       897 ~l~~------h~-~~V~~l~~--s~d-~~-~L~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      .+..      .. ..+..+|+  ++. ++ +++....+|.+..|++.....  ...+....+.-    .+.+..++..+.
T Consensus       115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~  190 (355)
T 3amr_A          115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDE  190 (355)
T ss_dssp             ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred             eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCC
Confidence            4311      11 56777888  764 44 678888899999999843211  11111111111    135788999998


Q ss_pred             CcEEEEE-cCCeEEEEeCC-----ccceeeccccCCC-CCCeeEEEE--CCCCC-EEEEEe-CCCcEEEEecC-CCceee
Q 001258          964 QIHFLVV-HETQLAIFETT-----KLECVKQWVPRES-SAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLRC 1031 (1113)
Q Consensus       964 g~~l~~~-~d~~v~v~d~~-----~~~~~~~~~~~~h-~~~v~~l~~--s~dg~-~l~s~~-~Dg~v~vwd~~-~~~~~~ 1031 (1113)
                      ..+|+++ .+..|..|+.+     +++.+..+.. +| ...+..|++  .++++ ||++.+ .+.+..|||.. +.+.+.
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg  269 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVA  269 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecC-CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEE
Confidence            8888886 55567777754     3445544432 22 347888888  56666 666666 56799999996 778887


Q ss_pred             ecC
Q 001258         1032 RIN 1034 (1113)
Q Consensus      1032 ~~~ 1034 (1113)
                      .|.
T Consensus       270 ~f~  272 (355)
T 3amr_A          270 DFR  272 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.87  E-value=0.00018  Score=86.53  Aligned_cols=207  Identities=6%  Similarity=-0.040  Sum_probs=127.0

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      ..+..++|++.+..|+.+.  .+.|+.+++.+    ......+.........+++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            4567899999888888775  57899999875    22222222222345678888645666666566789999998754


Q ss_pred             eeeeeecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          893 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      .....+.........|++.|++.+|+.+.. . +.|..++++.....  ....  .. .   .....++|+|++..|+.+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~--~l~~--~~-l---~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC--EESC--SS-C---SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee--EEEe--CC-C---CCccEEEEeccCCEEEEE
Confidence            433333333345688999987665555443 2 67877777653211  1110  11 0   245789999987766664


Q ss_pred             --cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          971 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       971 --~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                        ..+.|.++++....................|++..+ .++++....+.|..++..+++.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              567899999875433222211112234556666544 344455566889999998888887765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.85  E-value=0.0022  Score=68.84  Aligned_cols=228  Identities=10%  Similarity=0.017  Sum_probs=138.4

Q ss_pred             EEEEEeCCeEEEEECCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee-eeecccccCeEEEE
Q 001258          832 YVMSASGGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKLKGHSKRITGLA  909 (1113)
Q Consensus       832 ~l~~~sdg~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~  909 (1113)
                      +|+.+....|+.+++..... ...+.........++|++.++.++.+-...+.|+.+++..+... ..+........+++
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            55566667899999986531 11111122356789999855666666667789999998765322 22222234567899


Q ss_pred             EcCCC-CEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc---CCeEEEEeCCccce
Q 001258          910 FSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH---ETQLAIFETTKLEC  985 (1113)
Q Consensus       910 ~s~d~-~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~---d~~v~v~d~~~~~~  985 (1113)
                      +.+.+ .++++-...+.|.+++++......  ..  ..+.    .....+++.|.+.+|+.+.   .+.|..++.+....
T Consensus        86 vd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~--~~~~----~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           86 CDWLGEKLYWTDSETNRIEVSNLDGSLRKV--LF--WQEL----DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSCSCEE--EE--CSSC----SSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             EEcCCCeEEEEECCCCEEEEEECCCCcEEE--EE--eCCC----CCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            98754 445555567889999987632211  11  0111    2457899999766666643   46788888764332


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                       ..+.. ..-.....|+|++++..|+.+. ..+.|..+|++.......+.       +.-..  |..++..  .+.++.+
T Consensus       158 -~~~~~-~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~-------~~~~~--P~glav~--~~~lywt  224 (318)
T 3sov_A          158 -FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK-------GSLPH--PFALTLF--EDILYWT  224 (318)
T ss_dssp             -EEEEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-------SCCSC--EEEEEEE--TTEEEEE
T ss_pred             -EEEEE-CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec-------CCCCC--ceEEEEe--CCEEEEE
Confidence             22221 1134678999999777776655 45789999987543322111       11122  2234544  3456666


Q ss_pred             EeCCCcEEEEeccCCC
Q 001258         1065 GLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1065 ~~~Dg~v~vW~~~~~~ 1080 (1113)
                      -...+.|..++..+|+
T Consensus       225 d~~~~~V~~~~~~~G~  240 (318)
T 3sov_A          225 DWSTHSILACNKYTGE  240 (318)
T ss_dssp             ETTTTEEEEEETTTCC
T ss_pred             ecCCCeEEEEECCCCC
Confidence            6667899999998877

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.82  E-value=0.0047  Score=69.58  Aligned_cols=252  Identities=13%  Similarity=0.106  Sum_probs=135.3

Q ss_pred             CCcEEEEEcCC--CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          359 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       359 ~~V~~~~~spd--g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      .....++|+|+  +..|+++ ...+.|+.+|..+++...                    +.+.......++|+++|++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            45689999995  3334444 333899999998776543                    122334688999999999555


Q ss_pred             EEeCC---Ce-EEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeec--cC
Q 001258          437 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG--HE  509 (1113)
Q Consensus       437 s~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~--h~  509 (1113)
                      +....   .. +...+...+....  ..+. .......+++.| ++.  ++++-..++.|+.+|..++.....+..  ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~--~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTER--LSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCE--EEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeecc--cccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            44321   22 3333333222111  1121 234567899999 565  555666778899999887766333321  11


Q ss_pred             cCEEEEeeeecCCce-EEEEEecCCcEEEEEcCCCCCe----eeeeCC-CCceEEEEEccCCCeEEeccccCceeEEEe-
Q 001258          510 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSR----VDYEAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQF-  582 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~----~~~~~~-~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~-  582 (1113)
                      ..-..++|++  ++. +.++-...+.|..+++......    ..+... ...-     ..+|.  .....-.....+++ 
T Consensus       273 ~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g-----~~dg~--~~~a~~~~P~giav~  343 (433)
T 4hw6_A          273 GSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPG-----WVDGM--GTGARLWGPNQGIFV  343 (433)
T ss_dssp             SSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCC-----CBCEE--GGGSBCSSEEEEEEE
T ss_pred             CCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCc-----cCCCc--ccceEEcCCccEEEE
Confidence            2233577654  445 4555556788999887632111    111111 0000     00000  00000112334666 


Q ss_pred             --------cCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC----------------CCCcCeEEEC-CCCCEEEEEE
Q 001258          583 --------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVST  637 (1113)
Q Consensus       583 --------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~  637 (1113)
                              .++++.+++-...+.|+.++. +|... .+.+.+.                ......+++. +++.++++=.
T Consensus       344 ~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~  421 (433)
T 4hw6_A          344 KNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDC  421 (433)
T ss_dssp             ECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEG
T ss_pred             ccccccccCCCCcEEEEECCCCEEEEECC-CCCEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeC
Confidence                    555666666666788888885 55433 3322110                1224578888 5666655555


Q ss_pred             CCCcEEEEEc
Q 001258          638 NDNGIKILAT  647 (1113)
Q Consensus       638 ~dg~i~iwd~  647 (1113)
                      ..+.|+.+++
T Consensus       422 ~n~rIr~i~~  431 (433)
T 4hw6_A          422 DNHRVRKIAP  431 (433)
T ss_dssp             GGTEEEEEEE
T ss_pred             CCCEEEEEec
Confidence            5667777664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0051  Score=69.28  Aligned_cols=156  Identities=13%  Similarity=0.073  Sum_probs=95.3

Q ss_pred             CCcEEEEEcC-CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          359 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       359 ~~V~~~~~sp-dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      .....|+|+| ++..|.++- ..+.|+.+|..+++...                    +.........++|+++|++|.+
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d-~~~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVG-EQHPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII  195 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEE-BTEEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEe-CCCcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence            4668999998 455445543 33889999988765432                    1123346889999999996666


Q ss_pred             EeCC----C-eEEEEEccCCceeeeeeeeecccCCeeEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCceeeEeec-cCc
Q 001258          438 AYSR----H-IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-HEA  510 (1113)
Q Consensus       438 ~~~d----~-~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h~~  510 (1113)
                      +...    . .+.+.+. .+.... ...+. .......++++| ++.  ++++-..++.|..++...+........ ...
T Consensus       196 ad~~~~~~~~~v~~~~~-~g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTR-ESGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EECCSCTTSEEEEEEEG-GGTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EeCCCCcccceEEEEeC-CCceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            6541    2 3433443 333221 01222 234567889999 555  566666778999999876654222221 123


Q ss_pred             CEEEEeeeecCCce-EEEEEecCCcEEEEEcCC
Q 001258          511 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       511 ~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~  542 (1113)
                      ....++|++  +|+ +.++-...+.|..++.+.
T Consensus       271 ~P~gia~~p--dG~~lyv~d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          271 WEFHIQFHP--SGNYAYIVVVNQHYILRSDYDW  301 (430)
T ss_dssp             CCEEEEECT--TSSEEEEEETTTTEEEEEEEET
T ss_pred             cceeEEEcC--CCCEEEEEECCCCEEEEEeCCc
Confidence            456778655  446 455556678899988764

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.0064  Score=68.41  Aligned_cols=253  Identities=8%  Similarity=0.011  Sum_probs=140.1

Q ss_pred             ceEEEEEeC-CCceEEEeec-CCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE----
Q 001258          753 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL----  826 (1113)
Q Consensus       753 ~i~~~~~s~-~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~----  826 (1113)
                      ....++|+| ++..|+++.. .+.|++.|+.                      ++.+....-.+...-.....++|    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~----------------------~~~v~~l~~~~~~~~~~p~~ia~~~~~  197 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLK----------------------NRMLSSPLNINTIPTNRIRSIAFNKKI  197 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETT----------------------TTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECC----------------------CCEEEEEEccCccccCCCcEEEEeecc
Confidence            467889998 3554555544 3556655543                      22222211111112335788999    


Q ss_pred             ---ecCCCEEEEEeC-C-------eEEEEECCC-Ccee-----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          827 ---SKNDSYVMSASG-G-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       827 ---s~~~~~l~~~sd-g-------~i~vwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                         +++|++|+++.+ +       .|.+++... +...     ..+. .-.....++++|+++.++++-..++.|+.+|+
T Consensus       198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence               999997777763 2       266665443 2221     1222 11245678899966777777778889999999


Q ss_pred             c-------ccee-----------eeee--cccccCeEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcccc--cccc-cc-
Q 001258          890 R-------VDEV-----------KSKL--KGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQK--NRFL-QI-  944 (1113)
Q Consensus       890 ~-------~~~~-----------~~~l--~~h~~~V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~~~~~--~~~~-~~-  944 (1113)
                      .       ++..           ...+  .+.....+.|+|+|+|++|. +-+..+.|+.++.+......  .... -. 
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~  356 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY  356 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence            7       4543           1122  12234467999999999644 44567788886654321100  0000 00 


Q ss_pred             -CCCCCC------CCCCCc-eEEEc-------cCCcEEEE-EcCCeEEEEeCCccceeeccccC------------C---
Q 001258          945 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E---  993 (1113)
Q Consensus       945 -~~~~~~------~~~~i~-~~~~s-------pdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~------------~---  993 (1113)
                       ..+...      .-.... .++..       ++|.++++ ..+..|+.++. +|.. .++...            +   
T Consensus       357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~v-~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGIV-STYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred             CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC-CCCE-EEEecccccccccCccccccCC
Confidence             011100      001223 44554       45666555 47788999984 4532 222211            1   


Q ss_pred             -------CCCCeeEEEECCC-CCEEEEEeCCCcEEEEecCCCcee
Q 001258          994 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLR 1030 (1113)
Q Consensus       994 -------h~~~v~~l~~s~d-g~~l~s~~~Dg~v~vwd~~~~~~~ 1030 (1113)
                             .-.....|+++++ |.+.++=..+..|+.++++.....
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                   1234678999997 666666556778999988765554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.74  E-value=0.0076  Score=67.81  Aligned_cols=252  Identities=9%  Similarity=0.009  Sum_probs=143.1

Q ss_pred             CccEEEEec-CCCEEEEEe--CCeEEEEECCCCceeeeecCC---CCCeeEEEE-------ecCCCcEEEEEecCC----
Q 001258          820 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS----  882 (1113)
Q Consensus       820 ~v~~l~~s~-~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~d~~~la~g~~dg----  882 (1113)
                      ....|+|+| +...|.++.  .+.|+++|+.++.........   ......++|       ++ +++.|.++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467899998 455565555  367999999886665444322   235789999       99 777565555443    


Q ss_pred             ---cEEEEEccc-ceee-----eeecccccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCC-------CCcc------c--
Q 001258          883 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q--  937 (1113)
Q Consensus       883 ---~v~iwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~-------~~~~------~--  937 (1113)
                         .|.+++... +...     ..+... .....++++|+ +.++++-..++.|..+|++       ++..      .  
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               266665443 2221     122211 23467889994 5555666678889999997       4432      0  


Q ss_pred             --cccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCC--cccee--eccc----cCCC---------CC
Q 001258          938 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA  996 (1113)
Q Consensus       938 --~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~--~~~~~--~~~~----~~~h---------~~  996 (1113)
                        ..........     .....++|+|+|.+|+++  ....|+.++..  ++...  ..+.    ..++         -.
T Consensus       298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence              0011111111     235789999999966554  66788886543  33210  1111    0111         12


Q ss_pred             Cee-EEEEC-------CCCCEEEEEeCCCcEEEEecCCCceeeecCCC-c----------ccCCC---cc-cCccceEEE
Q 001258          997 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPS-A----------YLPAG---VS-SNVHPLVIA 1053 (1113)
Q Consensus       997 ~v~-~l~~s-------~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~-~----------~~~~g---h~-~~v~~i~~~ 1053 (1113)
                      ... .++..       ++|.+.++=....+|+.++ .+|... ++.-. .          -...|   .. .--.|..++
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            344 45554       4566666666778899999 556433 33211 0          00011   00 012355678


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1054 AHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1054 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.+.+|.++++=.....|+.+++....
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            887446666766667889998887655

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.69  E-value=0.012  Score=71.27  Aligned_cols=206  Identities=6%  Similarity=-0.057  Sum_probs=128.6

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ...+.++++++.+..|+.+.  .+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            44577899998777777665  588999998753    223333334456788999984556666666788999999875


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ......+........+|++.|.+.+|..+.. + +.|...+++......  ..  ..+ .   .....+++++.+..|+.
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv--~~~-l---~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LV--TEN-I---QWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EE--CSS-C---SCEEEEEEETTTTEEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EE--eCC-C---CCceEEEEecCCCeEEE
Confidence            4433333344456899999998666666553 2 678888887633211  11  111 1   24578999987777776


Q ss_pred             E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeec
Q 001258          970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +  ....|..+++....................|++.  +.+|+.+. ..+.|...+..+|+.+..+
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            4  5668999998655443333211223345567763  33555444 5577888887777554444

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.67  E-value=0.015  Score=62.39  Aligned_cols=209  Identities=11%  Similarity=0.011  Sum_probs=122.5

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE-EE
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GV  437 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as  437 (1113)
                      ..+.+++|.+.+..|..+-...+.|..++...+.....                  ++...-.....+++.+.+..| .+
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~~   96 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYWT   96 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEEE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEEE
Confidence            45779999997776777766778899999876532110                  011112346678998755544 44


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCceeeEe-eccCcCEEEE
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYSV  515 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~-s~d~~i~iwd~~~~~~~~~~-~~h~~~v~~~  515 (1113)
                      -...+.|.++++.......   .+.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-...+.+
T Consensus        97 d~~~~~I~~~~~dG~~~~~---l~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A           97 DSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEE
T ss_pred             ECCCCEEEEEECCCCcEEE---EEeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccEE
Confidence            4566889999987643221   12234456789999997764 33333 345788888865 3333333 2223456788


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      ++++.. +.+.++-+..+.|..+|++.................+++..                      +..+.+-...
T Consensus       172 avd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~----------------------~~lywtd~~~  228 (318)
T 3sov_A          172 TLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE----------------------DILYWTDWST  228 (318)
T ss_dssp             EEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET----------------------TEEEEEETTT
T ss_pred             EEeccC-CEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC----------------------CEEEEEecCC
Confidence            876543 35556666678899998864332222221222233333321                      1234444456


Q ss_pred             CcEEEEECCCCceEEEEc
Q 001258          596 FSIKFWDMDSVQLLTSID  613 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~  613 (1113)
                      +.|..++..+++....+.
T Consensus       229 ~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          229 HSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTTCCSCEEEE
T ss_pred             CeEEEEECCCCCceEEEe
Confidence            778888887776655543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.61  E-value=0.0059  Score=64.63  Aligned_cols=191  Identities=10%  Similarity=0.135  Sum_probs=118.7

Q ss_pred             CcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCC----CC---EEEEEe-C--CCcEEEEeCCCCccccccc
Q 001258          872 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLVSSG-A--DSQLCVWSSDGWEKQKNRF  941 (1113)
Q Consensus       872 ~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~L~s~s-~--D~~v~iwd~~~~~~~~~~~  941 (1113)
                      ..+++.....+.+.+||+ +|+.++.+..  +.++.+..-|+    |+   +++... .  +++|.+|+++.....   .
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~---l  113 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT---L  113 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC---E
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc---e
Confidence            345665667789999999 7888888864  56777776653    22   223333 3  578999988532211   1


Q ss_pred             cccCCC--C-CCCCCCCceEEE--ccC-Cc-EEEE-EcCCeEEEEeC-------CccceeeccccCCCCCCeeEEEECCC
Q 001258          942 LQIPTG--R-TPTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSCD 1006 (1113)
Q Consensus       942 ~~~~~~--~-~~~~~~i~~~~~--spd-g~-~l~~-~~d~~v~v~d~-------~~~~~~~~~~~~~h~~~v~~l~~s~d 1006 (1113)
                      ......  . ......+..+++  +|. ++ ++++ ..++.+..|++       .+.+.++.+..   .+.+..+...+.
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~  190 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDE  190 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETT
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCC
Confidence            111000  0 000135677888  774 54 4444 47789999888       34566777765   457889999999


Q ss_pred             CCEEEEEeCCCcEEEEecC-----CCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEe-CCCcEEEEecc
Q 001258         1007 SQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1077 (1113)
Q Consensus      1007 g~~l~s~~~Dg~v~vwd~~-----~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~-~Dg~v~vW~~~ 1077 (1113)
                      ..+|+.+-+|.-|..++.+     +++.+..+..     .+-...+..+.+-..+ +++ +|++++ .++++.+||..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~-----g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-----RHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS-----SSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecC-----CccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence            9999999998666666644     3455554421     0122356666554444 444 555444 67899999996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.50  E-value=0.026  Score=59.12  Aligned_cols=205  Identities=11%  Similarity=0.078  Sum_probs=125.2

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeee-ecC----CC--CCeeEEEE---ecCCCcEEEEEec-----
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PP--PAATFLAF---HPQDNNIIAIGMD-----  880 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~la~g~~-----  880 (1113)
                      .--..+++|++....+..++  .++|..|+...+..... +..    ..  ..+..+.|   .| +++++++...     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccc
Confidence            44456899988666666666  89999999976543332 322    11  13578999   68 6888876442     


Q ss_pred             --------CCcEEEEEcc---cceeeeeec--ccc-----------cCeEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCc
Q 001258          881 --------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWE  935 (1113)
Q Consensus       881 --------dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~L~s~s~D-~~v~iwd~~~~~  935 (1113)
                              +..|..||+.   +++.+....  ...           .....++..++|+..++++.- +.|...+.+...
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~  170 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT  170 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE
Confidence                    6789999999   777664443  211           247899999999999998887 776666655431


Q ss_pred             cccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCCeEEEEeCCccce--eeccccCC--CCCCeeEE-EECCCCCE
Q 001258          936 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL 1009 (1113)
Q Consensus       936 ~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~~v~v~d~~~~~~--~~~~~~~~--h~~~v~~l-~~s~dg~~ 1009 (1113)
                      . ...........  .......++++|||..|++. ..+.+..+|+.+...  +..-..+.  .......| ..-.+|+.
T Consensus       171 ~-~~~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~v  247 (334)
T 2p9w_A          171 V-STFAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNES  247 (334)
T ss_dssp             E-EEEEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEE
T ss_pred             E-eeeeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEE
Confidence            1 11111111111  11246799999999988884 588899999884332  11110011  11123333 33457777


Q ss_pred             -EEEEeCCCcEEEEecCC
Q 001258         1010 -VYACFLDATVCVFSAAN 1026 (1113)
Q Consensus      1010 -l~s~~~Dg~v~vwd~~~ 1026 (1113)
                       |++.+..+.+.+.+.+.
T Consensus       248 llV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          248 VLVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEEETTEEEEEECSST
T ss_pred             EEEEcCCCCEEEEECCCC
Confidence             55555566666655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.46  E-value=0.065  Score=64.77  Aligned_cols=207  Identities=11%  Similarity=0.014  Sum_probs=115.2

Q ss_pred             CcceEEEEEcCCCCeEE-EEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001258          420 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  497 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~  497 (1113)
                      ...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence            44678999999655554 4455678999988753210 011123334456788999988875 55666678899999977


Q ss_pred             CCceeeEeeccCcCEEEEeeeecCCceEEEEEecC-CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          498 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       498 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                      .......+.........|++.+.. +.+.++-... +.|...+++.......+.........|++.              
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD--------------  566 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLD--------------  566 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEE--------------
T ss_pred             CCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEe--------------
Confidence            544333333344567788876543 3444444333 667777765432222222222334444444              


Q ss_pred             eeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          577 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                             +.+..|+.+. ..+.|...++........+...........|++.. ++++++-...+.|...+..++
T Consensus       567 -------~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          567 -------LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             -------TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred             -------cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCC
Confidence                   4333455543 45678888886554444443322222334566532 234444445577888887776

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.45  E-value=0.00073  Score=81.31  Aligned_cols=228  Identities=8%  Similarity=0.017  Sum_probs=130.2

Q ss_pred             EEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc----ceeeeeecccccCeEEE
Q 001258          833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGL  908 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~----~~~~~~l~~h~~~V~~l  908 (1113)
                      |+.+..+.|++.++.+......+. ....+..++|++.++.++++-...+.|+.+++..    ......+........+|
T Consensus       380 ll~~~~~~I~~id~~~~~~~~~~~-~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl  458 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  458 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEECCSC-CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred             EEecCccceEEEeCCCCcceeeec-cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence            344445678888887765544433 2345778999984444444445667999999875    22222222222345678


Q ss_pred             EEcCC-CCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--c-CCeEEEEeCCccc
Q 001258          909 AFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H-ETQLAIFETTKLE  984 (1113)
Q Consensus       909 ~~s~d-~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~-d~~v~v~d~~~~~  984 (1113)
                      ++.+. ++++++-...+.|.+++++......  ...  .+.    .....++++|++.+|+.+  . .+.|.++++....
T Consensus       459 avD~~~g~LY~tD~~~~~I~v~d~dg~~~~~--l~~--~~~----~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          459 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--LFR--EQG----SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             ECCCSSSBCEECCTTTSCEEEEBSSSCCEEE--ECC--CSS----CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             EEEeeCCcEEEEeccCCeEEEEecCCCceEE--EEe--CCC----CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            88854 4445554567889999987643211  111  110    235789999976666653  2 2678887775432


Q ss_pred             eeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEE
Q 001258          985 CVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFA 1063 (1113)
Q Consensus       985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~ 1063 (1113)
                      . ..+.. ..-.....|+|+|++..|+.+. ..+.|.+++++.......+...     +.-.....  +++..  +.+++
T Consensus       531 ~-~~l~~-~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~-----~~~~~P~g--lavd~--~~lyw  599 (699)
T 1n7d_A          531 I-YSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE-----KRLAHPFS--LAVFE--DKVFW  599 (699)
T ss_dssp             C-CEESC-SSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCS-----SSCSSCCC--CEEET--TEEEE
T ss_pred             e-eEEEe-CCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecC-----CcCCCceE--eEEEC--CEEEE
Confidence            2 22211 1134567899999876665554 5578999999754333222110     11112222  44443  34566


Q ss_pred             EEeCCCcEEEEeccCCC
Q 001258         1064 LGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1064 s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +....+.|..++..+++
T Consensus       600 td~~~~~V~~~d~~~G~  616 (699)
T 1n7d_A          600 TDIINEAIFSANRLTGS  616 (699)
T ss_dssp             ECSTTTCEEEEETTTEE
T ss_pred             EeCCCCeEEEEEccCCC
Confidence            66667899999987777

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.29  E-value=0.29  Score=52.83  Aligned_cols=96  Identities=10%  Similarity=0.090  Sum_probs=69.6

Q ss_pred             CeEEEEECCCC---ce-----eee--ec--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE
Q 001258          839 GKISLFNMMTF---KT-----MAT--FM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  906 (1113)
Q Consensus       839 g~i~vwd~~~~---~~-----~~~--~~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~  906 (1113)
                      ++++|.++...   ..     ...  +.  ....-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|.
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF  304 (494)
T 1bpo_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIF  304 (494)
T ss_dssp             CEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE
T ss_pred             cEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceE
Confidence            78999998542   11     011  11  1233457788888 666888889999999999999999987777777887


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWE  935 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~  935 (1113)
                      .-+...+..-++.....|.|.--.++...
T Consensus       305 ~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          305 VTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred             EecccCCCCcEEEEccCceEEEEEEcccc
Confidence            77776666677777788888877776643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.20  E-value=0.19  Score=54.57  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  433 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  433 (1113)
                      .-...+.++|.|||+ ++++ ..+|.|.+++  .++.....     ++.         +..........|+|+||   +.
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~-----~~~---------v~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYA-----ELS---------VYHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEE-----ECC---------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEee-----cce---------EeecCCCCceeEEECCCCCCCC
Confidence            445679999999998 4554 5669999998  44321110     100         11222346789999998   55


Q ss_pred             eEEEEeC-C-----CeEEEEEccCCcee--eeee-eee---cccCCeeEEEEcCCCCeeEEEEe
Q 001258          434 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC  485 (1113)
Q Consensus       434 ~las~~~-d-----~~i~iwd~~~~~~~--~~~~-~l~---~h~~~V~~v~~s~~~~~~~l~s~  485 (1113)
                      +|.++.. +     +.|..|+...+..-  +.+. .+.   +.......++|.|||.  +.++.
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            5554433 2     67888888754211  1111 122   1112346899999996  44443

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.18  E-value=0.37  Score=51.99  Aligned_cols=235  Identities=14%  Similarity=0.129  Sum_probs=151.1

Q ss_pred             ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeec
Q 001258          821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK  899 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~  899 (1113)
                      ..+.-++|..+.+|.-...++.|||+++.+.+..+.-.. .|.-=.|-.  .+.|+..+ +..|+-|++.. ..+.+.+.
T Consensus        68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e-~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFd  143 (494)
T 1bpo_A           68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD-DVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD  143 (494)
T ss_dssp             CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSS-CCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred             cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCC-CceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhee
Confidence            456778899998888888999999999988888776433 566666654  35666665 56899999964 34555555


Q ss_pred             ccc----cCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC----
Q 001258          900 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ----  964 (1113)
Q Consensus       900 ~h~----~~V~~l~~s~d~~~L~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg----  964 (1113)
                      -|.    ..|..-..+++.+|++..|-       .|.+.+|+.+.+.      -+..+||..     ....+-.+|    
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~  212 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE  212 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCC
Confidence            443    46777888999999885543       3678899988743      233444421     222222222    


Q ss_pred             -cEEEEEc----CCeEEEEeCCcc---c------eeecc-ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCce
Q 001258          965 -IHFLVVH----ETQLAIFETTKL---E------CVKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       965 -~~l~~~~----d~~v~v~d~~~~---~------~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                       ..++.+.    .++++|.++...   .      .+..+ .++.-..-..++..|+.-..++..+.-|.|.+||++++..
T Consensus       213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             ceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence             2233332    268999988543   1      11112 2223356677889999888999999999999999999999


Q ss_pred             eeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1030 RCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1030 ~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.+-+.       ....|.  ..+... ...=++.....|.|.--.+.+..
T Consensus       293 i~~nrI-------s~~~iF--~t~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          293 IYMNRI-------SGETIF--VTAPHE-ATAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEEC-------CSSCEE--EEEEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred             eeeecc-------cCCceE--EecccC-CCCcEEEEccCceEEEEEEcccc
Confidence            876541       112232  122233 22334445578877776666544

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=97.17  E-value=0.00032  Score=56.23  Aligned_cols=36  Identities=31%  Similarity=0.420  Sum_probs=33.1

Q ss_pred             CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCc
Q 001258            1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFF   36 (1113)
Q Consensus         1 ~~~~~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~   36 (1113)
                      |+..+.||+.||..||.|.||..||-+|++||+|.-
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~   36 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ   36 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence            788899999999999999999999999999999864

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.10  E-value=0.098  Score=56.90  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCce--eeeec---CCCCCeeEEEEecC---CCcEEEEEecC-----CcEEE
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQ---DNNIIAIGMDD-----SSIQI  886 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~d-----g~v~i  886 (1113)
                      ....++|.|+|+++++-.+|.|++++  +++.  +..+.   ........++|+|+   ++.+.++-..+     +.|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            46789999999976665589999998  3332  11121   12346889999993   24444444432     67888


Q ss_pred             EEcccc-----ee-eeeec---ccccCeEEEEEcCCCCEEEEEe
Q 001258          887 YNVRVD-----EV-KSKLK---GHSKRITGLAFSHALNVLVSSG  921 (1113)
Q Consensus       887 wd~~~~-----~~-~~~l~---~h~~~V~~l~~s~d~~~L~s~s  921 (1113)
                      |+...+     +. +..+.   +.......|+|.|||.+.++.+
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            887643     11 22233   1111236899999998777754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.08  E-value=0.13  Score=55.99  Aligned_cols=231  Identities=13%  Similarity=0.118  Sum_probs=123.1

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCCc-eeeeec---CCCCCeeEEEEecC---CCcEEEEEec---C----CcE
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI  884 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~---d----g~v  884 (1113)
                      .....++|.|+|+++++-.+|.|++++. +++ .+..+.   ........++++|+   ++.+.++-+.   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3467899999998777666899999974 443 222221   12345889999993   3555444432   3    567


Q ss_pred             EEEEcccc-------eee-eeecc-cccCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcccccc--
Q 001258          885 QIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQKNR--  940 (1113)
Q Consensus       885 ~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~L~s~s~D-------------~~v~iwd~~~~~~~~~~--  940 (1113)
                      ..|+....       +.+ ..+.. .......|+|.|||.++++.+..             +.|.-++.+.. .....  
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCC
Confidence            77776543       111 11221 11124679999999888775432             34444444321 00000  


Q ss_pred             --ccccCCCCCCCCCCCceEEEcc-CCcEEEEE--cCC--eEEEEeCCccce------------------eeccccCCCC
Q 001258          941 --FLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLEC------------------VKQWVPRESS  995 (1113)
Q Consensus       941 --~~~~~~~~~~~~~~i~~~~~sp-dg~~l~~~--~d~--~v~v~d~~~~~~------------------~~~~~~~~h~  995 (1113)
                        ......++    .....++|+| +|.++++-  .+.  .|.+..  .+.-                  +..+. .. .
T Consensus       187 ~~~~i~a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~-~  258 (354)
T 3a9g_A          187 PNSPIWSYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTG-SE-T  258 (354)
T ss_dssp             TTCCEEEECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECT-TC-C
T ss_pred             CCCcEEEEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecC-CC-C
Confidence              00011111    1357899999 67766652  222  233332  2220                  11110 11 3


Q ss_pred             CCeeEEEEC-------CCCCEEEEEeCCCcEEEEecCCC-ceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEe
Q 001258          996 APITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGL 1066 (1113)
Q Consensus       996 ~~v~~l~~s-------~dg~~l~s~~~Dg~v~vwd~~~~-~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~ 1066 (1113)
                      .....++|.       .+|.++++....+.|...+++.. +....-   ..+. +...  .+..+++.| ||.+.++..
T Consensus       259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~---~~~~-~~~~--rp~~v~~~p-DG~lyv~~~  330 (354)
T 3a9g_A          259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIS---TFFK-NVFG--RLRDVVIDD-DGGILISTS  330 (354)
T ss_dssp             CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEE---EECT-TTSC--CEEEEEECT-TSCEEEEEC
T ss_pred             cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCccccee---eecc-CCCC--CeeEEEECC-CCcEEEEEe
Confidence            457788883       57777777666778888888753 322110   0111 1112  344578888 677666654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.00  E-value=0.56  Score=50.82  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=62.4

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  433 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  433 (1113)
                      .-...+.|+|.|||+ |+++ ..+|.|.+++ .+++ .....+.              +..........|+|+|+   +.
T Consensus        27 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g   88 (354)
T 3a9g_A           27 DLEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKS   88 (354)
T ss_dssp             SCSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCC
Confidence            456789999999998 4554 5569999997 3444 1100000              11122346889999998   55


Q ss_pred             eEEEEeC----C----CeEEEEEccCC--ce--eeee-eeee-cccCCeeEEEEcCCCCeeEEEEe
Q 001258          434 LFGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC  485 (1113)
Q Consensus       434 ~las~~~----d----~~i~iwd~~~~--~~--~~~~-~~l~-~h~~~V~~v~~s~~~~~~~l~s~  485 (1113)
                      +|.++..    +    ..|..|+...+  ..  .+.+ ..+. +.......|+|.|||.  +.++.
T Consensus        89 ~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~  152 (354)
T 3a9g_A           89 WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT  152 (354)
T ss_dssp             EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence            5544432    3    56777887654  11  1111 1122 1111347899999997  44443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.97  E-value=0.098  Score=55.71  Aligned_cols=225  Identities=11%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             CEEEEEe---CCeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC----CcEEEEEcccce--eeeeec
Q 001258          831 SYVMSAS---GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE--VKSKLK  899 (1113)
Q Consensus       831 ~~l~~~s---dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~--~~~~l~  899 (1113)
                      .+++.|+   ...+.+||..+.+-..  .+....... +++. - ++.+++.|+.+    ..+.+||..+.+  .+..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDA-ACVF-W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSC-EEEE-E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCccccee-EEEE-E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3445554   2579999988754322  222212222 2222 2 67788888765    578899988754  222222


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-c-
Q 001258          900 GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-  971 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~-  971 (1113)
                      .....-..+.+  ++++++.|+.+      ..+.+||..+.+=..  ....+..+     .-..+ ..-+++.++.+ . 
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r-----~~~~~-~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT--KPSMLTQR-----CSHGM-VEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE--ECCCSSCC-----BSCEE-EEETTEEEEECCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe--CCCCcCCc-----ceeEE-EEECCEEEEECCCC
Confidence            21111222222  67777888765      458889987743211  11111111     11222 23366666653 2 


Q ss_pred             --------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcc
Q 001258          972 --------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAY 1038 (1113)
Q Consensus       972 --------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~ 1038 (1113)
                              -..+.+||..+.+....-.... ...-.+++. -++++++.|+.+     ..+.+||..+.+-... .   .
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~  233 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVF-VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---P  233 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---C
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEE-ECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---C
Confidence                    3458899998876443321111 111112222 267777777654     3588999988754422 1   1


Q ss_pred             cCCCcccCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258         1039 LPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus      1039 ~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
                      .+.....  .  .++..  ++.+++.|+.+     ..+.++|+.+.+
T Consensus       234 ~p~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          234 MPWKGVT--V--KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             CSCCBSC--C--EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCCccc--e--eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            2211111  1  12222  56788888855     468888888865

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.90  E-value=0.061  Score=58.02  Aligned_cols=109  Identities=11%  Similarity=0.072  Sum_probs=80.8

Q ss_pred             EEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee----
Q 001258          823 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV----  894 (1113)
Q Consensus       823 ~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~----  894 (1113)
                      -.....+|..++.+.++.||.-++.....-+.+...    ...|..+..+| +|++||..+ +..|.|-.+..+..    
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345567889999999999999998754444444332    23688999999 999999886 55899988873210    


Q ss_pred             ------e--eeecc------cccCeEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001258          895 ------K--SKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       895 ------~--~~l~~------h~~~V~~l~~s~d---~~~L~s~s~D~~v~iwd~~~  933 (1113)
                            +  ..+.-      ...+|..+.|+|-   +..|++-..|++|++||+..
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                  1  11211      3567999999985   56899999999999999987

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.90  E-value=0.17  Score=52.95  Aligned_cols=164  Identities=10%  Similarity=0.085  Sum_probs=103.1

Q ss_pred             cEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE---cCCCCeEEE
Q 001258          361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW---SPDGSLFGV  437 (1113)
Q Consensus       361 V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~---spdg~~las  437 (1113)
                      ..+.+|.+....++++.-..++|..||...+..... .+.  ++...         ......+..|.|   .|+++++++
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~~s~~---------g~~~~~~sGl~~~~~D~~grL~vv   82 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--GASSN---------GDGEQQMSGLSLLTHDNSKRLFAV   82 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--TTCCS---------SCCSEEEEEEEESSSSSCCEEEEE
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--Ccccc---------CCCcceeeEEEEeccCCCCcEEEE
Confidence            357899887665566655789999999976543321 100  00000         011124589999   688888876


Q ss_pred             EeC-------------CCeEEEEEcc---CCceeeeeeeeeccc-----------CCeeEEEEcCCCCeeEEEEecCC-C
Q 001258          438 AYS-------------RHIVQIYSYH---GGDEVRQHLEIDAHV-----------GGVNDIAFSHPNKQLCVITCGDD-K  489 (1113)
Q Consensus       438 ~~~-------------d~~i~iwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~~~~~~~l~s~s~d-~  489 (1113)
                      ...             +..|..+|+.   +++.+... .|....           .....++..++|.  ..++++.- +
T Consensus        83 ~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~~  159 (334)
T 2p9w_A           83 MKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGMP  159 (334)
T ss_dssp             EEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESSC
T ss_pred             EcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCCC
Confidence            442             6779999999   77655322 232221           2488999999999  67777777 7


Q ss_pred             cEEEEeCCCCceeeEeecc------CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCC
Q 001258          490 TIKVWDATNGAKQYIFEGH------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  542 (1113)
Q Consensus       490 ~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  542 (1113)
                      .|...+.. |+.+..+...      ....+.|++++  +|.+|+.....|.|..+|+..
T Consensus       160 ~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          160 AIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSS
T ss_pred             eEEEEeCC-CCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCC
Confidence            77777744 4433333211      12245677654  456777776699999999884

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.89  E-value=0.14  Score=55.65  Aligned_cols=242  Identities=11%  Similarity=0.078  Sum_probs=124.2

Q ss_pred             CccEEEEecCCC-EEEEEeCCeEEEEECCCCcee---eee----cCCCCCeeEEEEecC---CCcEEEEEec-------C
Q 001258          820 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D  881 (1113)
Q Consensus       820 ~v~~l~~s~~~~-~l~~~sdg~i~vwd~~~~~~~---~~~----~~~~~~i~~l~~s~~---d~~~la~g~~-------d  881 (1113)
                      ....++|.|+|+ ++++-..|.|++++... ...   ..+    .........++|+|+   ++.+.++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999999 66655589999998543 221   111    112345689999993   3544444332       2


Q ss_pred             CcEEEEEcccc-------eee-eeec-----ccccCeEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001258          882 SSIQIYNVRVD-------EVK-SKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE  935 (1113)
Q Consensus       882 g~v~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~s~d~~~L~s~s~D-------------~~v~iwd~~~~~  935 (1113)
                      ..|..|++..+       +.+ ..+.     .|.  -..|+|.|||.++++.+..             +.|.-++.+.. 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~-  174 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE-  174 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC-
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC-
Confidence            35666666432       111 1111     132  3579999999777765442             34555555432 


Q ss_pred             cccccc---------cccCCCCCCCCCCCceEEEcc-CCcEEEE--EcCCeEEEEeCCcccee-----------------
Q 001258          936 KQKNRF---------LQIPTGRTPTAQSDTRVQFHQ-DQIHFLV--VHETQLAIFETTKLECV-----------------  986 (1113)
Q Consensus       936 ~~~~~~---------~~~~~~~~~~~~~i~~~~~sp-dg~~l~~--~~d~~v~v~d~~~~~~~-----------------  986 (1113)
                      ......         .....++    .....++|+| +|.++++  +.++.=.|.-+..+.-.                 
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~  250 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP  250 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred             CCCCCCCcCCCCCCccEEEEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence            100000         0001111    1357899999 6666665  22222233322222110                 


Q ss_pred             -------ecccc----CCCCCCeeEEEECC-------CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCcc
Q 001258          987 -------KQWVP----RESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048 (1113)
Q Consensus       987 -------~~~~~----~~h~~~v~~l~~s~-------dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~ 1048 (1113)
                             ..+..    -.+...+..++|..       +|.++++....+.|...+++.++......   .+. +...  .
T Consensus       251 ~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~-~~~~--r  324 (353)
T 2g8s_A          251 EAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT-DRGQ--R  324 (353)
T ss_dssp             TCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG-GGCC--C
T ss_pred             cccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc-CCCC--c
Confidence                   00000    01123566778753       57777776677888888887654432211   111 1112  3


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      +..+++.| ||.++++.. ++.=+||.+.
T Consensus       325 p~~v~~~p-dG~lyv~td-~~~g~I~ri~  351 (353)
T 2g8s_A          325 IRDVRTGP-DGYLYVLTD-ESSGELLKVS  351 (353)
T ss_dssp             EEEEEECT-TSCEEEEEC-STTEEEEEEE
T ss_pred             eeEEEECC-CCcEEEEEe-CCCCEEEEEe
Confidence            44588888 777666433 2223555553

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.72  E-value=0.099  Score=55.51  Aligned_cols=217  Identities=9%  Similarity=0.049  Sum_probs=112.4

Q ss_pred             CeEEEEECCCCceee--eecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEcccce-----eeeeecccccCeE
Q 001258          839 GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT  906 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~~~-----~~~~l~~h~~~V~  906 (1113)
                      ..+.+||..+.+-..  .+...... .+++. . ++.+++.|+.+     ..+.+||..+.+     .+..+......-.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRY-VASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhcc-ccEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            368899987654322  12211111 22222 3 67788888865     368999987654     3322222222222


Q ss_pred             EEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cC-----CeE
Q 001258          907 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL  975 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d-----~~v  975 (1113)
                      .+.+  +++.++.|+.++     .+.+||+.+.+-..  ....+...      ....+...+++.++.+ .+     ..+
T Consensus       108 ~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          108 ATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSM--LGDMQTAR------EGAGLVVASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             EEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEE--EEECSSCC------BSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             EEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEE--CCCCCCCc------ccceEEEECCEEEEECCCCCCcccceE
Confidence            2222  677777776543     57888887643211  11111111      1122222366666663 32     468


Q ss_pred             EEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcccCCCcccCccce
Q 001258          976 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050 (1113)
Q Consensus       976 ~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i 1050 (1113)
                      .+||..+.+....-.... ...-.+++ .-++++++.|+.+     ..+.+||..+.+-...-.    .+.....  .  
T Consensus       178 ~~~d~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~--~--  247 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMAT-KRSGAGVA-LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCY--V--  247 (301)
T ss_dssp             EEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBS--C--
T ss_pred             EEEeCCCCcEEeCCCCCc-ccccceEE-EECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccc--e--
Confidence            899988776543321111 11111222 2367777777764     468999998876543211    1211111  1  


Q ss_pred             EEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258         1051 VIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus      1051 ~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
                      .+...  ++.+++.|+.+     ..+.++|+.+.+
T Consensus       248 ~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          248 GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence            12222  56777888766     357888888755

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.69  E-value=0.19  Score=53.28  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=116.9

Q ss_pred             CCEEEEEe-C----CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEcccce--ee
Q 001258          830 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE--VK  895 (1113)
Q Consensus       830 ~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~~~--~~  895 (1113)
                      +.+++.|+ +    ..+..||+.+.+-...  +..... -.+++. - ++.+++.|+.++     .+.+||..+.+  .+
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRC-RAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCB-SCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccc-cceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34455554 2    4588899876543222  111111 122222 2 677888887553     58899987653  22


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ..+......-..+.+  +++.++.|+.++     .+.+||+.+.+=..  ....+..+     .-..++ .-+++.++.+
T Consensus        93 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~--~~~~p~~r-----~~~~~~-~~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH--VAPMNTRR-----SSVGVG-VVGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE--ECCCSSCC-----BSCEEE-EETTEEEEEC
T ss_pred             CCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee--cCCCCCcc-----cCceEE-EECCEEEEEe
Confidence            222221122222222  677778887653     47788877643211  11111111     112222 2356666653


Q ss_pred             -c-------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCc
Q 001258          971 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus       971 -~-------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
                       .       -..+.+||..+.+....-.... ...-.+++ .-++++++.|+.+     ..+.+||..+.+-...-.   
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---  237 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---  237 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence             2       2358899998776543321111 11111222 2267777888765     368999998875543211   


Q ss_pred             ccCCCcccCccceEEEEeCCCCCEEEEEeCCC-----cEEEEeccCCCccccC
Q 001258         1038 YLPAGVSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1085 (1113)
Q Consensus      1038 ~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~ 1085 (1113)
                       .+.....  .  .++..  ++.+++.|+.++     .+.+||+.+.+  |..
T Consensus       238 -~~~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~  281 (302)
T 2xn4_A          238 -MNMCRRN--A--GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV  281 (302)
T ss_dssp             -CSSCCBS--C--EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred             -CCCcccc--C--eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence             1111111  1  12222  567888887664     48899988865  554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.46  E-value=0.36  Score=51.00  Aligned_cols=188  Identities=7%  Similarity=0.011  Sum_probs=98.2

Q ss_pred             cCCCEEEEEe-C-----CeEEEEECCCCc---e--eeeecCCCCCeeEEEEecCCCcEEEEEecCC-----cEEEEEccc
Q 001258          828 KNDSYVMSAS-G-----GKISLFNMMTFK---T--MATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV  891 (1113)
Q Consensus       828 ~~~~~l~~~s-d-----g~i~vwd~~~~~---~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~v~iwd~~~  891 (1113)
                      .+++.++.|+ +     ..+.+||..+.+   -  +..+...... .+++. . ++++++.|+.++     .+.+||..+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL-AGATT-L-GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS-CEEEE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc-eeEEE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence            4666666665 3     459999988755   2  2222211122 22222 2 677888887543     688999876


Q ss_pred             ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      .+  .+..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+=...  ...+..      .....+..-++
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~--~~~p~~------r~~~~~~~~~~  207 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV--TPMATK------RSGAGVALLND  207 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE--CCCSSC------CBSCEEEEETT
T ss_pred             CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC--CCCCcc------cccceEEEECC
Confidence            43  33333221111222222  67777877765     4588899877432111  111111      11122223356


Q ss_pred             cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258          965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus       965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
                      +.++.+ .+     ..+.+||..+.+....-...........+  .-++++++.|+.+     ..|.+||..+.+-.
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT--VLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--EECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            666663 32     46899999887654332211111111222  2367777777765     35788888776543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.40  E-value=0.58  Score=49.81  Aligned_cols=219  Identities=11%  Similarity=0.101  Sum_probs=112.1

Q ss_pred             CCeEEEEECCCCceee-eecCCCCCeeEEEEecCCCcEEEEEec----C-------CcEEEEEcccce--eeeeeccccc
Q 001258          838 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----D-------SSIQIYNVRVDE--VKSKLKGHSK  903 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~----d-------g~v~iwd~~~~~--~~~~l~~h~~  903 (1113)
                      ...+.+||..+.+-.. .+..........+... ++.+++.|+.    +       ..+.+||..+.+  .+..+.....
T Consensus        12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            4678999998766432 2221222333333344 7788888884    1       127888887754  2222221111


Q ss_pred             CeEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEE-c-C
Q 001258          904 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E  972 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D--------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~-~-d  972 (1113)
                      .-..+.+  +++.++.|+.+        ..+.+||..+.+=   .... .+..      .....+...+++.++.+ . +
T Consensus        91 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W---~~~~~~p~~------r~~~~~~~~~~~iyv~GG~~~  159 (315)
T 4asc_A           91 LFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW---GESDPLPYV------VYGHTVLSHMDLVYVIGGKGS  159 (315)
T ss_dssp             SCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEE---EECCCCSSC------CBSCEEEEETTEEEEECCBCT
T ss_pred             ceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcE---eECCCCCCc------ccceeEEEECCEEEEEeCCCC
Confidence            1122222  56777777742        4588889877431   1111 1111      11222333566666664 3 2


Q ss_pred             -----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC-----cEEEEecCCCceeeecCCCcccCCC
Q 001258          973 -----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus       973 -----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg-----~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
                           ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++     .+.+||..+.+-...-.    .+..
T Consensus       160 ~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~  233 (315)
T 4asc_A          160 DRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE  233 (315)
T ss_dssp             TSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC
T ss_pred             CCcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc
Confidence                 368999998775443321111 11111222 23777888887654     48889998875543211    1111


Q ss_pred             cccCccceEEEEeCCCCCEEEEEeCCC--------------cEEEEeccCCC
Q 001258         1043 VSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESE 1080 (1113)
Q Consensus      1043 h~~~v~~i~~~~~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~ 1080 (1113)
                      ...  .  .++..  ++.+++.|+.++              .+.++|+.+.+
T Consensus       234 r~~--~--~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          234 RSS--L--SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             CBS--C--EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             ccc--e--eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence            111  1  12222  567778877642              36778887765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.37  E-value=0.33  Score=51.63  Aligned_cols=228  Identities=12%  Similarity=0.074  Sum_probs=116.8

Q ss_pred             cCCCEEEEEe-C----CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEec----C-----CcEEEEEccc
Q 001258          828 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV  891 (1113)
Q Consensus       828 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~----d-----g~v~iwd~~~  891 (1113)
                      -++..++.|+ +    ..+.+||..+.+-...  +...... .+++. . ++.+++.|+.    +     ..+.+||..+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSG-LAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBS-CEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCccccc-ceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3556666665 2    4688999876543222  1111111 22332 2 6678888776    2     3688999876


Q ss_pred             ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      .+  .+..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+=...  ...+...     .-..++. -++
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r-----~~~~~~~-~~~  169 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV--APMLTRR-----IGVGVAV-LNR  169 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEEC--CCCSSCC-----BSCEEEE-ETT
T ss_pred             CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeEC--CCCCccc-----cceEEEE-ECC
Confidence            53  22222221122222233  67777777644     3588888877432111  1111111     1122222 256


Q ss_pred             cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeec
Q 001258          965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~ 1033 (1113)
                      +.++.+ .+     ..+.+||..+.+....-........-..+.+  ++++++.|+.+     ..+.+||+.+.+-... 
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~-  246 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFV-  246 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEC-
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEEC-
Confidence            666653 32     4689999887765433211111111122222  67777777765     4599999988755432 


Q ss_pred             CCCcccCCCcccCccceEEEEeCCCCCEEEEEeCC-----CcEEEEeccCCC
Q 001258         1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1080 (1113)
Q Consensus      1034 ~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1080 (1113)
                      .   ..+.....  .  .++..  ++.+++.|+.+     ..+.++|+.+.+
T Consensus       247 ~---~~p~~r~~--~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          247 A---PMKHRRSA--L--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             C---CCSSCCBS--C--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             C---CCCCCccc--e--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1   11211111  1  12222  56778887754     357888888765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.29  E-value=0.36  Score=51.23  Aligned_cols=229  Identities=8%  Similarity=-0.033  Sum_probs=109.8

Q ss_pred             CeEEEEEecC--CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC----CeE
Q 001258          371 QTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIV  444 (1113)
Q Consensus       371 ~~ll~~gs~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~i  444 (1113)
                      .++++.|+.+  ..+.+||..+++-....          ..+.   ...+|    .++.  -+++.++.|+.+    ..+
T Consensus        12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~----------~~p~---~r~~~----~~~~--~~~~lyv~GG~~~~~~~~~   72 (306)
T 3ii7_A           12 DYRIALFGGSQPQSCRYFNPKDYSWTDIR----------CPFE---KRRDA----ACVF--WDNVVYILGGSQLFPIKRM   72 (306)
T ss_dssp             CEEEEEECCSSTTSEEEEETTTTEEEECC----------CCSC---CCBSC----EEEE--ETTEEEEECCBSSSBCCEE
T ss_pred             ceEEEEeCCCCCceEEEecCCCCCEecCC----------CCCc---cccee----EEEE--ECCEEEEEeCCCCCCcceE
Confidence            4467777653  57889998876543210          0000   01122    2222  267777888755    568


Q ss_pred             EEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC------CcEEEEeCCCCceeeE--eeccCcCEEEEe
Q 001258          445 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD------KTIKVWDATNGAKQYI--FEGHEAPVYSVC  516 (1113)
Q Consensus       445 ~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~--~~~h~~~v~~~~  516 (1113)
                      .+||..+++-.. ...+......-..+.+  +++  +++.|+.+      ..+.+||..+.+-...  +......-.++.
T Consensus        73 ~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  147 (306)
T 3ii7_A           73 DCYNVVKDSWYS-KLGPPTPRDSLAACAA--EGK--IYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE  147 (306)
T ss_dssp             EEEETTTTEEEE-EECCSSCCBSCEEEEE--TTE--EEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             EEEeCCCCeEEE-CCCCCccccceeEEEE--CCE--EEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE
Confidence            899998875332 2222211111122222  455  56666654      4688999887653322  111111111111


Q ss_pred             eeecCCceEEEEEec---------CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          517 PHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                        .  ++.+++.|+.         -..+.+||+.+..-...-.           .|..+         .-..+... ++.
T Consensus       148 --~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~-----------~p~~r---------~~~~~~~~-~~~  202 (306)
T 3ii7_A          148 --A--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP-----------MIEAR---------KNHGLVFV-KDK  202 (306)
T ss_dssp             --E--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC-----------CSSCC---------BSCEEEEE-TTE
T ss_pred             --E--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC-----------ccchh---------hcceEEEE-CCE
Confidence              1  3356666654         2347777776542111100           01110         00001111 233


Q ss_pred             EEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-----CcEEEEEcCCC
Q 001258          588 RFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----NGIKILATSDG  650 (1113)
Q Consensus       588 ~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~  650 (1113)
                      .++.|+.+     ..+.+||+.+.+....-.....  .....+..-++++++.|+.+     ..+.+||..+.
T Consensus       203 i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          203 IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--ccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence            44555432     4688999988754433221111  11112222267788888754     45778887765

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.25  E-value=1.4  Score=47.14  Aligned_cols=201  Identities=11%  Similarity=0.052  Sum_probs=107.1

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCcee--eee----cCCCCCeeEEEEecC---CCcEEEEEe--cCCcEEE
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF----MPPPPAATFLAFHPQ---DNNIIAIGM--DDSSIQI  886 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~--~~~----~~~~~~i~~l~~s~~---d~~~la~g~--~dg~v~i  886 (1113)
                      .....++|.|||+++++-. .|.|++++..+++..  ..+    .........++|+|+   ++.+.++-+  .++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            4578999999999888887 799999987655432  112    122445789999983   344444322  3456666


Q ss_pred             EEcccc----------eee-eeec---ccccCeEEEEEcCCCCEEEEEeC-------------CCcEEEEeCCCCccccc
Q 001258          887 YNVRVD----------EVK-SKLK---GHSKRITGLAFSHALNVLVSSGA-------------DSQLCVWSSDGWEKQKN  939 (1113)
Q Consensus       887 wd~~~~----------~~~-~~l~---~h~~~V~~l~~s~d~~~L~s~s~-------------D~~v~iwd~~~~~~~~~  939 (1113)
                      |.+..+          +.+ ..+.   .|.  -..|+|.|||.+.++.+.             .+.|.-.+.+.. ....
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~-ip~~  188 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGE-PAPG  188 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSS-BCTT
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCC-ccCC
Confidence            665431          111 1221   243  357999999998888653             233444444321 0000


Q ss_pred             cc----cccCCCCCCCCCCCceEEEccCCcEEEE--EcCCeEEEEeCCccceee-----------cc-----ccCCCCCC
Q 001258          940 RF----LQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVK-----------QW-----VPRESSAP  997 (1113)
Q Consensus       940 ~~----~~~~~~~~~~~~~i~~~~~spdg~~l~~--~~d~~v~v~d~~~~~~~~-----------~~-----~~~~h~~~  997 (1113)
                      ..    .....++    .....++|+|+|.+.++  +.++.-.|--+..+.-..           .+     ....+...
T Consensus       189 nPf~~~~i~a~G~----RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a  264 (347)
T 3das_A          189 NPFPGSPVYSYGH----RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS  264 (347)
T ss_dssp             CSSTTCCEEEBCC----SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred             CCCCCCeEEeeCC----CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence            00    0011122    23578999999887777  344433333333332110           00     00011134


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          998 ITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      ...++|. +|.+++..-..+.|....++..
T Consensus       265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~  293 (347)
T 3das_A          265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGT  293 (347)
T ss_dssp             EEEEEEE-TTEEEEEESTTCSEEEEEEETT
T ss_pred             CcceEEE-cCceeeccccCCEEEEEEecCC
Confidence            5567775 4555555555555655565543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.20  E-value=1.4  Score=49.48  Aligned_cols=104  Identities=14%  Similarity=0.125  Sum_probs=62.9

Q ss_pred             CCccEEEEecCCCEEEEEeC-CeEEEEECCCCcee--eeecC------CCCCeeEEEEecC---CCcEEEEEec------
Q 001258          819 EAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD------  880 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---d~~~la~g~~------  880 (1113)
                      ....+++|.|+|+++++-.. +.|++++..+++..  ..+..      .......++|+|+   ++.+.++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            35679999999998887765 47998886555432  22221      2345779999994   4444444332      


Q ss_pred             ------CCcEEEEEcccc-------eee-eeecc-cccCeEEEEEcCCCCEEEEEeC
Q 001258          881 ------DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA  922 (1113)
Q Consensus       881 ------dg~v~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~L~s~s~  922 (1113)
                            ...|.-|+...+       +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                  235555655321       111 11221 1123688999999998887664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.19  E-value=0.54  Score=50.45  Aligned_cols=186  Identities=10%  Similarity=0.011  Sum_probs=95.4

Q ss_pred             ceEEEEEcCCCCeEEEEe------------CCCeEEEEEccCC--ceeeeeeeeec-----ccCCeeEEEEcC--CCCee
Q 001258          422 SVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGG--DEVRQHLEIDA-----HVGGVNDIAFSH--PNKQL  480 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~------------~d~~i~iwd~~~~--~~~~~~~~l~~-----h~~~V~~v~~s~--~~~~~  480 (1113)
                      ....++..|+|..+++++            .+|.|.++|.++.  +.. .+ .+.+     .......+.+.+  ++...
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-EL-EIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEE-EC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-EE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            456777889886666652            6899999999843  322 11 2333     234566777755  45432


Q ss_pred             EEEEecC--CCcEEEEeCCCCce----eeEeecc-CcCEEEEeeeecCCceEEEEEec---C--------------CcEE
Q 001258          481 CVITCGD--DKTIKVWDATNGAK----QYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK  536 (1113)
Q Consensus       481 ~l~s~s~--d~~i~iwd~~~~~~----~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~---d--------------g~i~  536 (1113)
                      +++.-..  +.+|.+|++..+..    +..+.+. -...+.+.+.  ++|.+.++...   |              |.|.
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            3333332  57888888765422    2233322 2345666654  34455555431   1              2233


Q ss_pred             EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCC-CceE--EEE
Q 001258          537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQLL--TSI  612 (1113)
Q Consensus       537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~  612 (1113)
                      .+|.  .+ ...+...-.                     ....++|+|+++.++.+. ..+.|+.|++.. ++..  ..+
T Consensus       207 r~d~--~~-~~~~~~~l~---------------------~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~  262 (355)
T 3sre_A          207 YYSP--ND-VRVVAEGFD---------------------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL  262 (355)
T ss_dssp             EECT--TC-CEEEEEEES---------------------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEC--Ce-EEEeecCCc---------------------ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence            3322  11 111111111                     223455555555565544 578899998863 3321  223


Q ss_pred             ccCCCCCCcCeEEECC-CCCEEEEEEC
Q 001258          613 DADGGLPASPRIRFNK-DGCLLAVSTN  638 (1113)
Q Consensus       613 ~~~~~~~~v~~~~~s~-~~~~l~~~~~  638 (1113)
                      ..   ....-.+++.+ +|++.+++..
T Consensus       263 ~~---~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          263 SF---DTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             EC---SSEEEEEEECTTTCCEEEEEES
T ss_pred             eC---CCCCceEEEeCCCCcEEEEecC
Confidence            21   12345677887 4877776553

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.05  E-value=2.1  Score=46.18  Aligned_cols=113  Identities=12%  Similarity=0.142  Sum_probs=59.9

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CCe
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL  434 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~  434 (1113)
                      -...+.|+|.|+|+++++ +...|.|.+++.. ++...  .+  -++       . .+.....+....|+|+||   +.+
T Consensus        17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~--~~~-------~-~v~~~g~~g~~gia~~pdf~~~g~   82 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PL--SGV-------P-DVWAHGQGGLLDVVLAPDFAQSRR   82 (353)
T ss_dssp             ESSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CC--BSC-------C-CCCCSTTCSEEEEEECTTHHHHCE
T ss_pred             CCCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Ee--cCC-------c-ccccCCCCCceeEEECCCCCCCCE
Confidence            346799999999985344 4567999999853 32210  00  000       0 012222446789999996   444


Q ss_pred             EEEE-eC-------CCeEEEEEccCCc-eeeeeee-eec------ccCCeeEEEEcCCCCeeEEEEe
Q 001258          435 FGVA-YS-------RHIVQIYSYHGGD-EVRQHLE-IDA------HVGGVNDIAFSHPNKQLCVITC  485 (1113)
Q Consensus       435 las~-~~-------d~~i~iwd~~~~~-~~~~~~~-l~~------h~~~V~~v~~s~~~~~~~l~s~  485 (1113)
                      |..+ ..       ...|..|++..+. .+..... +..      ....-..|+|.|||. +++..|
T Consensus        83 lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  148 (353)
T 2g8s_A           83 IWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG  148 (353)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred             EEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence            4443 22       2356667765431 1111111 111      111246799999995 344443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.04  E-value=0.42  Score=59.74  Aligned_cols=204  Identities=12%  Similarity=0.116  Sum_probs=126.5

Q ss_pred             ccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc-ceeeeeec
Q 001258          821 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK  899 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~-~~~~~~l~  899 (1113)
                      ..+.-++|..+.+|.-...++.|||+++.+.+..+.-. ..|.-=.|-.  .+.|+..+ +..|+-|++.. ..+...+.
T Consensus        68 AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~-e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             chhhccCCCcceEEEecCCeEEEeehHHhhhhcccccC-CCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHh
Confidence            34566788888888877889999999988777766533 3455556653  45666555 55899999964 23444444


Q ss_pred             cc----ccCeEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEE
Q 001258          900 GH----SKRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  968 (1113)
Q Consensus       900 ~h----~~~V~~l~~s~d~~~L~s~s~-------D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~  968 (1113)
                      -|    ...|..-..+++.+|++..|-       .|.+.+|+++.+..      +..+||......+..-...+....++
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s------Q~iegha~~F~~~~~~~~~~~~~l~~  217 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS------QPIEGHAASFAQFKMEGNAEESTLFC  217 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc------hhhhHhHhhhheeccCCCCCCceEEE
Confidence            44    456778888899999886543       47788998877432      23333322100000000011122222


Q ss_pred             EEc----CCeEEEEeCCcc---c------eeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          969 VVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       969 ~~~----d~~v~v~d~~~~---~------~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .+.    .++++|.++...   .      .+..+. +..-..-..++..|+.-..++..+.-|.|.++|+.|+..+.+-+
T Consensus       218 f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r  297 (1630)
T 1xi4_A          218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR  297 (1630)
T ss_pred             EEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence            232    267888887443   1      111111 12224556678888888888889999999999999998886543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.99  E-value=0.015  Score=61.85  Aligned_cols=199  Identities=6%  Similarity=0.018  Sum_probs=107.6

Q ss_pred             cEEEEEecCCcEEEEEcccceeeeeeccc-ccCeEEEEE---cCCCCEEEEE-eCCCcEEEEeCCCCccccccccccCCC
Q 001258          873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAF---SHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG  947 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~---s~d~~~L~s~-s~D~~v~iwd~~~~~~~~~~~~~~~~~  947 (1113)
                      .++++++.||.|+-+|..+|+.+-++... ..++....-   ..++..++.. +.||.|..++..++.............
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            47888999999999999999998887654 122222110   0123333333 589999999988764321111110000


Q ss_pred             CCCCCCCCceEEE------------ccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCC-----eeEEEEC-----C
Q 001258          948 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C 1005 (1113)
Q Consensus       948 ~~~~~~~i~~~~~------------spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~-----v~~l~~s-----~ 1005 (1113)
                             ..-+..            +.+|..++.+.++.+...|+.+|+.+..+....-...     ..|....     .
T Consensus        91 -------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           91 -------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             -------TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             -------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence                   011111            2455444557999999999999999988764321111     1112111     1


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCccc
Q 001258         1006 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1083 (1113)
Q Consensus      1006 dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1083 (1113)
                      .+..|+.+..+..+.+.+ .+|+ +..+....+.+....+.+.. .... ..|+.+ +.++.||.|...|..+|+..|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~-~~~~-s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLAL-QNTF-SKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHT-TCSS-CSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccccccccc-cccc-ccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245677777777777777 4554 33222111111111000000 0000 114555 446889999999998888777

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=95.83  E-value=0.0082  Score=47.82  Aligned_cols=55  Identities=16%  Similarity=0.228  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCccH--HHHHHHhhccCHHHHHHHhcc
Q 001258            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFNM--KYFEDEVHNGNWDDVEKYLSG   59 (1113)
Q Consensus         5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~~--~~~~~~i~~g~w~~~~~~~~~   59 (1113)
                      ++|+.+-|++||..+||.+++.+|.+|.++..+-  ..--.-+++-.|..++++=++
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKK   66 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   66 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHH
Confidence            5689999999999999999999999999988751  223455677778776655443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.80  E-value=0.14  Score=55.35  Aligned_cols=127  Identities=17%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             CCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEe-------eeeeeeccCCCCcccccccccCCCcceEEEEEcC-
Q 001258          359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-------RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  430 (1113)
Q Consensus       359 ~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  430 (1113)
                      +.|..+..||+|++ ||.- .+.+|.|-.+..+.....       ...+.+.++.        .......+|..+.|+| 
T Consensus        66 ~~i~qlvlSpsG~l-LAl~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl  135 (452)
T 3pbp_A           66 DDTFHVISSTSGDL-LCLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK  135 (452)
T ss_dssp             CTTCEEEECTTSSE-EEEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred             CceeEEEECCCCCE-EEEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence            47889999999995 5554 366899988874432211       0011222211        0112467899999999 


Q ss_pred             --CCCeEEEEeCCCeEEEEEccCCceeee-------eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          431 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       431 --dg~~las~~~d~~i~iwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                        .|..|++-..|+.|++||+........       ...+..+...|.+++|..++-.+|+++....|.|.-..
T Consensus       136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence              567899999999999999986331111       01122333578888888877766666666666665443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.72  E-value=1.1  Score=47.71  Aligned_cols=226  Identities=8%  Similarity=-0.062  Sum_probs=106.9

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-----C------
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-----R------  441 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-----d------  441 (1113)
                      +++.|+  ..+.+||..+++-.. .                 .+..........+...+++.++.|+.     .      
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~-~-----------------~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~   66 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYC-A-----------------SLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMS   66 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEE-E-----------------ECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEE
T ss_pred             EEEEcC--CceEEECCCCCeEec-C-----------------CCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccc
Confidence            566666  579999998876321 0                 01111122233344458888888873     1      


Q ss_pred             CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCceee--EeeccCcC
Q 001258          442 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQY--IFEGHEAP  511 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d--------~~i~iwd~~~~~~~~--~~~~h~~~  511 (1113)
                      ..+.+||..+++-.. ...+......-..+.+  +++  +++.|+.+        ..+.+||..+++-..  .+......
T Consensus        67 ~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  141 (315)
T 4asc_A           67 AYFLQFDHLDSEWLG-MPPLPSPRCLFGLGEA--LNS--IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYG  141 (315)
T ss_dssp             EEEEEEETTTTEEEE-CCCBSSCEESCEEEEE--TTE--EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBS
T ss_pred             cceEEecCCCCeEEE-CCCCCcchhceeEEEE--CCE--EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccc
Confidence            127788888765322 1111111111112222  444  55666632        458899988764321  11111111


Q ss_pred             EEEEeeeecCCceEEEEEec-C-----CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          512 VYSVCPHHKENIQFIFSTAL-D-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      -.++.    -++.+++.|+. +     ..+.+||..+..-...-.           .|..+         ....++ .-+
T Consensus       142 ~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~-----------~p~~r---------~~~~~~-~~~  196 (315)
T 4asc_A          142 HTVLS----HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP-----------MQTAR---------SLFGAT-VHD  196 (315)
T ss_dssp             CEEEE----ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC-----------CSSCC---------BSCEEE-EET
T ss_pred             eeEEE----ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC-----------CCCch---------hceEEE-EEC
Confidence            11111    13356677765 2     357777776532111000           01111         000011 113


Q ss_pred             CCEEEEEecCC-----cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC--------------cEEEEE
Q 001258          586 KNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN--------------GIKILA  646 (1113)
Q Consensus       586 ~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd  646 (1113)
                      +..++.|+.++     .+.+||+.+.+....-.....  .....+..-++++++.|+.++              .+.+||
T Consensus       197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd  274 (315)
T 4asc_A          197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYN  274 (315)
T ss_dssp             TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred             CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEec
Confidence            34455565443     588999988765443222211  112222233667788777532              366777


Q ss_pred             cCCC
Q 001258          647 TSDG  650 (1113)
Q Consensus       647 ~~~~  650 (1113)
                      +.+.
T Consensus       275 ~~~~  278 (315)
T 4asc_A          275 EEEK  278 (315)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            7665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.69  E-value=0.17  Score=49.27  Aligned_cols=149  Identities=8%  Similarity=0.002  Sum_probs=82.7

Q ss_pred             CCcEEEEEecCCcEEEEEccccee-----eeeeccc--ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc
Q 001258          871 DNNIIAIGMDDSSIQIYNVRVDEV-----KSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  943 (1113)
Q Consensus       871 d~~~la~g~~dg~v~iwd~~~~~~-----~~~l~~h--~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~  943 (1113)
                      ...+|....+| +|+.=...++..     ..+..++  =..++.++|+|+|.+.+.  .+|.++-.+..+.......-..
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34566666666 655544333321     1111122  246789999999987766  6676655555432221111110


Q ss_pred             cCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeecccc------CCCCCCeeEEEECCCCCEEEEEeCCC
Q 001258          944 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP------RESSAPITHATFSCDSQLVYACFLDA 1017 (1113)
Q Consensus       944 ~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~------~~h~~~v~~l~~s~dg~~l~s~~~Dg 1017 (1113)
                      ..-+.... ..-..+.|.|+|.+.++ .|+.|.-++..+.... .|..      ..--..+..|.|.|+|.+.++.  |+
T Consensus        80 t~IG~~Gw-~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg  154 (236)
T 1tl2_A           80 KKIGNGGW-NQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQ  154 (236)
T ss_dssp             EEEECSCG-GGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TT
T ss_pred             cEeccccc-ccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCceEEEEe--CC
Confidence            00000000 11368899999999888 7798887776432211 1110      0113578999999999877666  88


Q ss_pred             cEEEEecCCC
Q 001258         1018 TVCVFSAANL 1027 (1113)
Q Consensus      1018 ~v~vwd~~~~ 1027 (1113)
                      .++-+...++
T Consensus       155 ~lyr~~~P~~  164 (236)
T 1tl2_A          155 QFYKALPPVS  164 (236)
T ss_dssp             EEEEECCCSS
T ss_pred             cEEecCCCCC
Confidence            7655554433

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.66  E-value=0.54  Score=49.69  Aligned_cols=188  Identities=11%  Similarity=0.072  Sum_probs=89.6

Q ss_pred             CCCeEEEEeCC-----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC-----cEEEEeCCCCc
Q 001258          431 DGSLFGVAYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----TIKVWDATNGA  500 (1113)
Q Consensus       431 dg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-----~i~iwd~~~~~  500 (1113)
                      +++.++.|+.+     ..+.+||..+.+-.. ...+......-.++.+  +++  +++.|+.++     .+.+||+.+.+
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~~--~~~--iyv~GG~~~~~~~~~~~~~d~~~~~  135 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-VANMRDRRSTLGAAVL--NGL--LYAVGGFDGSTGLSSVEAYNIKSNE  135 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSCEEEEE--TTE--EEEEEEECSSCEEEEEEEEETTTTE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceee-CCCCCccccceEEEEE--CCE--EEEEcCCCCCccCceEEEEeCCCCe
Confidence            67777777754     358889988765332 2122111111122222  444  555565443     57888887765


Q ss_pred             eeeE--eeccCcCEEEEeeeecCCceEEEEEecC-------CcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec
Q 001258          501 KQYI--FEGHEAPVYSVCPHHKENIQFIFSTALD-------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  571 (1113)
Q Consensus       501 ~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  571 (1113)
                      -...  +........++.  .  ++.+++.|+.+       ..+.+||+.+..-...           .-.|..+.    
T Consensus       136 W~~~~~~p~~r~~~~~~~--~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~----  196 (302)
T 2xn4_A          136 WFHVAPMNTRRSSVGVGV--V--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----------AEMSTRRS----  196 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE--E--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----------CCCSSCCB----
T ss_pred             EeecCCCCCcccCceEEE--E--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----------CCCccccc----
Confidence            3322  111111111111  1  33566666543       3467777765321111           00011110    


Q ss_pred             cccCceeEEEecCCCCEEEEEecC-----CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCC-----c
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-----G  641 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~  641 (1113)
                          ...++.+  ++..++.|+.+     ..+.+||+.+.+....-....  ......+...++++++.|+.++     .
T Consensus       197 ----~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~  268 (302)
T 2xn4_A          197 ----GAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM--CRRNAGVCAVNGLLYVVGGDDGSCNLAS  268 (302)
T ss_dssp             ----SCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCBCSSSBCCC
T ss_pred             ----cccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCC--ccccCeEEEECCEEEEECCcCCCccccc
Confidence                0011111  23345555543     478999998876544322211  1112222233677888877553     4


Q ss_pred             EEEEEcCCC
Q 001258          642 IKILATSDG  650 (1113)
Q Consensus       642 i~iwd~~~~  650 (1113)
                      +.+||+.+.
T Consensus       269 v~~yd~~~~  277 (302)
T 2xn4_A          269 VEYYNPTTD  277 (302)
T ss_dssp             EEEEETTTT
T ss_pred             EEEEcCCCC
Confidence            788888765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.59  E-value=0.53  Score=51.22  Aligned_cols=92  Identities=18%  Similarity=0.240  Sum_probs=48.8

Q ss_pred             CCCEEEEEe--CCeEEEEECCC--C--ceeeeecCCCCCeeEEEEecCCCcEEEEEec-C---------CcEEEEEcccc
Q 001258          829 NDSYVMSAS--GGKISLFNMMT--F--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRVD  892 (1113)
Q Consensus       829 ~~~~l~~~s--dg~i~vwd~~~--~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-d---------g~v~iwd~~~~  892 (1113)
                      +++.++.|+  ...+.+||..+  .  ..+..+......-.+++..  ++++++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            677777776  46799999864  2  2222222111112223332  5778888876 2         46899998774


Q ss_pred             e--eeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258          893 E--VKSKLKGHSKRITGLAFSHALNVLVSSGAD  923 (1113)
Q Consensus       893 ~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D  923 (1113)
                      +  .+..+. ........+...++++++.|+.+
T Consensus        97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence            3  222222 01111111222477888888865

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.37  E-value=0.26  Score=47.99  Aligned_cols=150  Identities=12%  Similarity=0.033  Sum_probs=84.6

Q ss_pred             CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC--------eEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       860 ~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      ..+..++|+| ++.+.++  .+|.++-.+..+... ..+.+....        -.++.|.++|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3678999999 8888777  678776666544211 111111122        378999999998888  5698887775


Q ss_pred             CCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeec-----cccCCCCCCeeEEEECCC
Q 001258          932 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQ-----WVPRESSAPITHATFSCD 1006 (1113)
Q Consensus       932 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~-----~~~~~h~~~v~~l~~s~d 1006 (1113)
                      .+............-+.. .-..+..+.|.|+|.+.++. ++.+.-....+.....-     .........-.-+.|+++
T Consensus       115 P~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSG-GWSGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CCSTTCCHHHHSEEEECS-SGGGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             CcCCCCceeccccEeccC-CCCceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            443322211110000000 00256889999999999998 88864433332221110     111111233445668888


Q ss_pred             CCEEEEEeCCCcE
Q 001258         1007 SQLVYACFLDATV 1019 (1113)
Q Consensus      1007 g~~l~s~~~Dg~v 1019 (1113)
                      +.+.++-  +|.+
T Consensus       193 G~l~~v~--~g~~  203 (236)
T 1tl2_A          193 GTLFGVQ--GGKF  203 (236)
T ss_dssp             SCEEEEE--TTEE
T ss_pred             CcEEEEe--CCeE
Confidence            8766554  6633

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.22  E-value=2.2  Score=45.22  Aligned_cols=218  Identities=12%  Similarity=0.092  Sum_probs=108.7

Q ss_pred             CeEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEec----CC-------cEEEEEccccee--eeeecccccC
Q 001258          839 GKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEV--KSKLKGHSKR  904 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~----dg-------~v~iwd~~~~~~--~~~l~~h~~~  904 (1113)
                      ..+..||..+.+-... ...........+... ++.+++.|+.    ++       .+.+||..+.+-  +..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            4588899887654331 221122222233334 6788888873    12       277888876432  2222221111


Q ss_pred             eEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCccccccccc-cCCCCCCCCCCCceEEEccCCcEEEEE-c----
Q 001258          905 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQSDTRVQFHQDQIHFLVV-H----  971 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D-------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~spdg~~l~~~-~----  971 (1113)
                      -..+.+  +++.++.|+.+       ..+.+||+.+.+=   .... .+...     .-..++ ..+++.++.+ .    
T Consensus       103 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r-----~~~~~~-~~~~~iyv~GG~~~~~  171 (318)
T 2woz_A          103 FGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKW---SEVKNLPIKV-----YGHNVI-SHNGMIYCLGGKTDDK  171 (318)
T ss_dssp             CEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEE---EEECCCSSCE-----ESCEEE-EETTEEEEECCEESSS
T ss_pred             cceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCE---eECCCCCCcc-----cccEEE-EECCEEEEEcCCCCCC
Confidence            222222  67777777754       2477888776431   1111 11111     112222 2566666663 2    


Q ss_pred             --CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcccCCCcc
Q 001258          972 --ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVS 1044 (1113)
Q Consensus       972 --d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~~~~gh~ 1044 (1113)
                        -..+.+||..+.+....-.... ...-.+++. -++++++.|+.+     ..+.+||..+.+-... .   ..|....
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~  245 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERS  245 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCB
T ss_pred             CccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCccc
Confidence              1358999998876443321111 111112222 367777777654     3477899887754432 1   1221111


Q ss_pred             cCccceEEEEeCCCCCEEEEEeCC--------------CcEEEEeccCCC
Q 001258         1045 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESE 1080 (1113)
Q Consensus      1045 ~~v~~i~~~~~p~d~~~l~s~~~D--------------g~v~vW~~~~~~ 1080 (1113)
                      .  .  .+...  ++.+++.|+.+              ..+.++|+.+.+
T Consensus       246 ~--~--~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          246 S--I--SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             S--C--EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred             c--e--EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence            1  1  12222  56777777754              357788888755

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.20  E-value=2.3  Score=44.90  Aligned_cols=187  Identities=11%  Similarity=0.057  Sum_probs=95.8

Q ss_pred             CCCEEEEEeC----------CeEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecC-----CcEEEEEccc
Q 001258          829 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  891 (1113)
Q Consensus       829 ~~~~l~~~sd----------g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~v~iwd~~~  891 (1113)
                      +++.++.|+.          +.+.+||..+.+-...  +....... +++..  ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI-GVGVI--DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC-EEEEE--TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCcccc-EEEEE--CCEEEEEcCCCCCcccccEEEECCCC
Confidence            5666665542          3588999876543222  22111122 22222  66788887754     3688999876


Q ss_pred             ce--eeeeecccccCeEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          892 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       892 ~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      .+  .+..+......-..+.+  ++++++.|+.+     ..+.+||+.+.+=...  ...+..     ..-..++. -++
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~-----r~~~~~~~-~~~  216 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI--TAMNTI-----RSGAGVCV-LHN  216 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC--CCCSSC-----CBSCEEEE-ETT
T ss_pred             CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC--CCCCCc-----cccceEEE-ECC
Confidence            53  22222211122222233  67777777765     4588888876432111  111111     11122222 266


Q ss_pred             cEEEEE-cC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCcee
Q 001258          965 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1030 (1113)
Q Consensus       965 ~~l~~~-~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~ 1030 (1113)
                      +.++.+ .+     ..+.+||+.+.+....-.... ...-.+++. -++++++.|+.+     ..|.+||..+.+-.
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            666663 33     569999998876543322111 111112222 267777777754     34778888776543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.14  E-value=1.6  Score=54.71  Aligned_cols=71  Identities=8%  Similarity=0.067  Sum_probs=48.4

Q ss_pred             eeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       862 i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      ..++..|+ .-.++..-+.-|.|++||+.|+.++..-+-....|...+......-++.....|.|.--.++.
T Consensus       261 pv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          261 PVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             ceEEEecc-ccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            45677777 556778888999999999999998866555555665555544434445555666666555554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.12  E-value=4  Score=45.61  Aligned_cols=248  Identities=13%  Similarity=0.137  Sum_probs=139.1

Q ss_pred             cCCCEEEEEe--CCeEEEEECCCCceeeeec-CCCCCeeEEEEe--cCCCcEEEEEec-------CCcE---------EE
Q 001258          828 KNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI  886 (1113)
Q Consensus       828 ~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s--~~d~~~la~g~~-------dg~v---------~i  886 (1113)
                      .||+||..-.  +..|...+++..++-+.+. .....+..+.|-  | +..+++.+++       ||..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            5789999987  5789999999888766553 245568888886  5 5567776653       3321         11


Q ss_pred             E---EcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCC-------cccccc-
Q 001258          887 Y---NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQKNR-  940 (1113)
Q Consensus       887 w---d~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~---------------~v~iwd~~~~-------~~~~~~-  940 (1113)
                      |   |..+.+...++.- .+..-.+...++|++.++.+.+.               .+.++++...       +..... 
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            1   1112111111110 11222344567788888776542               2556664321       111000 


Q ss_pred             -ccccCCCCC------------CCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccce-------------eeccccC
Q 001258          941 -FLQIPTGRT------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR  992 (1113)
Q Consensus       941 -~~~~~~~~~------------~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~-------------~~~~~~~  992 (1113)
                       -..+..+..            +.......+.++|||++++++  -+.++.++|.++...             .....  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence             011111111            111345789999999999995  567899999875322             11222  


Q ss_pred             CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC----------ceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258          993 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus       993 ~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~----------~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
                       -.......+|.++|.-..+-..|..|.-|++...          ..+.++.++ |.| ||......  =.-.| ||++|
T Consensus       376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~-Yqp-GH~~~~~g--et~~~-dGk~l  449 (638)
T 3sbq_A          376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVH-YQP-GHLHASLC--ETNEA-DGKWL  449 (638)
T ss_dssp             -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCE-EEEEETTT--TSTTC-CSCEE
T ss_pred             -CCCcccEEEECCCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccc-cCC-cccccCCC--ccCCC-CccEE
Confidence             1456788999999955566668999999999753          344444422 222 44221110  00012 67787


Q ss_pred             EEEeC---CC----------cEEEEeccCCCccccC
Q 001258         1063 ALGLS---DG----------GVHVFEPLESEGKWGV 1085 (1113)
Q Consensus      1063 ~s~~~---Dg----------~v~vW~~~~~~~~~~~ 1085 (1113)
                      ++...   |.          +-.+.||+..++++-.
T Consensus       450 v~lnK~skdrfl~vGpl~pen~QlidIsGdkM~lv~  485 (638)
T 3sbq_A          450 VALSKFSKDRFLPVGPLHPENDQLIDISGDEMKLVH  485 (638)
T ss_dssp             EEEESCCTTSSCCCSSSCCEEEEEEECSSSSCEEEE
T ss_pred             EEecccccccCcCCCCCCCCcceeEecCCCceEEEe
Confidence            77643   33          3467777666654433

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=94.85  E-value=0.084  Score=48.83  Aligned_cols=67  Identities=16%  Similarity=0.278  Sum_probs=54.0

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccCC
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYG  134 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  134 (1113)
                      ++.. ++|+|+-|.||||+..|...+|..|+++.-.-+.....+.+++|..+....+...++....+.
T Consensus        48 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr  114 (156)
T 2nxp_A           48 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR  114 (156)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHH
Confidence            4444 999999999999999999999999999776666666778888998888777776666555443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=94.49  E-value=7.8  Score=43.39  Aligned_cols=102  Identities=16%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCCCce-------------eeeecCCCCCeeEEEEecCCCcEEEEEecCC
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS  882 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg  882 (1113)
                      ......+.++|||+++++++  +.++.|+|+.....             ....+ -.-.....+|.+ +|.-..+-.-|.
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS  399 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS  399 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence            44556789999999999998  78999999874211             11222 233467889999 776666667899


Q ss_pred             cEEEEEcccc----------eeeeeecccccCeEEEEE------cCCCCEEEEEeC
Q 001258          883 SIQIYNVRVD----------EVKSKLKGHSKRITGLAF------SHALNVLVSSGA  922 (1113)
Q Consensus       883 ~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~d~~~L~s~s~  922 (1113)
                      .|.-|++...          ..+.++.-|-. +-.+.-      .+||++|++...
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence            9999999763          45666666654 334443      479999999753

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.36  E-value=5.9  Score=41.44  Aligned_cols=174  Identities=14%  Similarity=0.088  Sum_probs=99.6

Q ss_pred             EecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC--------------CcEEEEE
Q 001258          826 LSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYN  888 (1113)
Q Consensus       826 ~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d--------------g~v~iwd  888 (1113)
                      ++.++.+|....   ++.|...+.+... ...+..    -.+--+++ ++.+|......              ..|+..+
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~   94 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK   94 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence            345777777765   4777777765443 333321    12345677 66666665542              3677777


Q ss_pred             cccceeeeeecccccCeEEEEEcCCCCEEEEEe--CCC--cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCC
Q 001258          889 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  964 (1113)
Q Consensus       889 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s--~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg  964 (1113)
                      +..++. ..+...  .  +..|++++++|+-..  .++  .|..-+++....  ..+..   .      .+  .+++++|
T Consensus        95 ~dg~~~-~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g  156 (302)
T 3s25_A           95 RNGHGS-TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSD  156 (302)
T ss_dssp             TTSCCC-EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEET
T ss_pred             CCCCcc-eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEEC
Confidence            765542 223211  1  236777899988776  344  455555554321  11111   1      11  3568899


Q ss_pred             cEEEEEc--CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC--CcEEEEecCCCce
Q 001258          965 IHFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLKL 1029 (1113)
Q Consensus       965 ~~l~~~~--d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~vwd~~~~~~ 1029 (1113)
                      +.|+...  ..+|.+.++..+.....+.     +... ..+.|++++|+-...+  ..|..-+++.+..
T Consensus       157 ~~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~  219 (302)
T 3s25_A          157 RYFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP  219 (302)
T ss_dssp             TEEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC
T ss_pred             CEEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe
Confidence            9988764  4678888887765443322     1222 3466999998876544  3576777766553

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.28  E-value=3.4  Score=44.63  Aligned_cols=58  Identities=9%  Similarity=-0.052  Sum_probs=30.6

Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC------cEEEEecCCCceeeec
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg------~v~vwd~~~~~~~~~~ 1033 (1113)
                      .+.+||+.+.+....-....  ......+...++++++.|+.++      .|.++++++++.+...
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQ--GRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CCEEEECC---CEEEEECSS--CCBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eEEEEecCCCceeeCCCCCC--CcccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            57789988765433211111  1111222335788888888653      3666688888777544

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.23  E-value=0.52  Score=50.06  Aligned_cols=146  Identities=11%  Similarity=0.008  Sum_probs=73.1

Q ss_pred             CCeEEEEECCCCceeeeecC----CCCCeeE---EEE-----ecCCCcEEEEEecCCcEEEEEcccceeeeeecccc--c
Q 001258          838 GGKISLFNMMTFKTMATFMP----PPPAATF---LAF-----HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS--K  903 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~----~~~~i~~---l~~-----s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~--~  903 (1113)
                      ||.|..++..+|.....+..    ...++..   ..+     +. .+..+.+|+.+|.+.-.|+.+|+.+.++....  +
T Consensus        66 dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~-~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~  144 (339)
T 2be1_A           66 DGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIV-EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNG  144 (339)
T ss_dssp             TTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC
T ss_pred             CCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccc-cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcc
Confidence            78888888877654333211    1111111   001     00 23477889999999999999999998875321  1


Q ss_pred             C-----eEEEEEc-----CCCCEEEEEeCCCcEEEEeCCCCcccccccc-ccCCCCCCCCCCCceEEEccCCcEEEEEcC
Q 001258          904 R-----ITGLAFS-----HALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  972 (1113)
Q Consensus       904 ~-----V~~l~~s-----~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~~~~d  972 (1113)
                      .     ..|....     ..+..|+.+..+..+.+.+ .+++  .+... ..................+.|+.++++..|
T Consensus       145 ~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~--~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~d  221 (339)
T 2be1_A          145 YFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA--SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRD  221 (339)
T ss_dssp             --------------------CCEEEEEEEEEECEECC-TTSC--CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETT
T ss_pred             cccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC--eEEEecccccccccccccccccccccCCcEEEECCC
Confidence            0     0011110     1235677677666666655 3332  11100 000000000000001112345777666788


Q ss_pred             CeEEEEeCCccceee
Q 001258          973 TQLAIFETTKLECVK  987 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~  987 (1113)
                      +.|..+|..+|..+.
T Consensus       222 g~v~A~d~~~G~~~W  236 (339)
T 2be1_A          222 KSLLASDLDFRIARW  236 (339)
T ss_dssp             TEEEEECSTTCCEEE
T ss_pred             CEEEEEECCCCcEEE
Confidence            888888888777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=94.13  E-value=3.8  Score=43.34  Aligned_cols=191  Identities=9%  Similarity=0.015  Sum_probs=95.8

Q ss_pred             EEecCCCEEEEEe-C----C-------eEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecC-------Cc
Q 001258          825 ALSKNDSYVMSAS-G----G-------KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-------SS  883 (1113)
Q Consensus       825 ~~s~~~~~l~~~s-d----g-------~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~  883 (1113)
                      +...+++.++.|+ .    +       .+.+||..+.+-...  +...... .+++..  ++++++.|+.+       ..
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL-FGLGEV--DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS-CEEEEE--TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc-cceEEE--CCEEEEEcCccCCCCcccce
Confidence            3445677777775 1    1       177788776543221  2211111 222322  56788888764       35


Q ss_pred             EEEEEcccce--eeeeecccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccc-cCCCCCCCCCC
Q 001258          884 IQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQ-IPTGRTPTAQS  954 (1113)
Q Consensus       884 v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~-~~~~~~~~~~~  954 (1113)
                      +.+||..+.+  .+..+......-..+.  .++++++.|+.+      ..+.+||+.+.+=   .... .+...     .
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W---~~~~~~p~~r-----~  198 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW---KDLAPMKTPR-----S  198 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEE---EEECCCSSCC-----B
T ss_pred             EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEE---EECCCCCCCc-----c
Confidence            8888987643  2222211111111222  367777777642      3588999887431   1111 11111     1


Q ss_pred             CceEEEccCCcEEEE-EcC-----CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC------------
Q 001258          955 DTRVQFHQDQIHFLV-VHE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------------ 1016 (1113)
Q Consensus       955 i~~~~~spdg~~l~~-~~d-----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D------------ 1016 (1113)
                      -..++. -+++.++. +.+     ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.+            
T Consensus       199 ~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~  275 (318)
T 2woz_A          199 MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLV-SLAGSLYAIGGFAMIQLESKEFAPT  275 (318)
T ss_dssp             SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEE-EETTEEEEECCBCCBC----CCBCC
T ss_pred             cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEE-EECCEEEEECCeeccCCCCceeccc
Confidence            122322 35666565 322     357789988776543321111 11111222 2367777777754            


Q ss_pred             --CcEEEEecCCCceee
Q 001258         1017 --ATVCVFSAANLKLRC 1031 (1113)
Q Consensus      1017 --g~v~vwd~~~~~~~~ 1031 (1113)
                        ..+.+||..+.+-..
T Consensus       276 ~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          276 EVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             BCCCEEEEETTTTEEEE
T ss_pred             eeeeEEEEeCCCCEehh
Confidence              347888888766543

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=94.09  E-value=0.053  Score=48.82  Aligned_cols=64  Identities=14%  Similarity=0.196  Sum_probs=50.1

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhcc
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSK  132 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  132 (1113)
                      ++.. ++|+|+-|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....++..++....
T Consensus        29 EL~~-lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~   92 (138)
T 2j4b_A           29 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYT   92 (138)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHH
Confidence            4554 999999999999999999999999999776666666 788888888777776665554443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=94.02  E-value=4.7  Score=41.69  Aligned_cols=222  Identities=14%  Similarity=0.080  Sum_probs=114.4

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .|..++....- .++.. ||.|..|-......+-........|..++...  ...++. . ||.|+.|-....-.+..-.
T Consensus        25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            56777765443 33333 89999998664332221111223577777653  344444 4 9999999865422111111


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  979 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d  979 (1113)
                      .-...|..++...+.  .+... ||.|+.|-........ .....       ...|..++...+.. ++.. |+.|..|-
T Consensus        99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg-~~~~~-------~~~i~~i~~G~~~~-~~l~-~G~v~~wG  165 (282)
T 3qhy_B           99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTT-VPAEA-------QSGVTALDGGVYTA-LAVK-NGGVIAWG  165 (282)
T ss_dssp             GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEE-EEEE-TTEEEEEE
T ss_pred             ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCC-CCccC-------CCCeEEEEcccCEE-EEEE-CCEEEEec
Confidence            113468888776543  33334 9999999765532211 01100       02344444433332 2224 78888887


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      ......+....  .-...|..++-..+...++   .||.|+.|=....-.+.       .|......|..  ++.-  ..
T Consensus       166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs~al---~~G~v~~wG~n~~gqlg-------~p~~~~~~v~~--i~~G--~~  229 (282)
T 3qhy_B          166 DNYFGQTTVPA--EAQSGVDDVAGGIFHSLAL---KDGKVIAWGDNRYKQTT-------VPTEALSGVSA--IASG--EW  229 (282)
T ss_dssp             CCTTSTTSCCG--GGGSSEEEEEECSSEEEEE---ETTEEEEEECCTTSTTC-------CCGGGGSSCCE--EEEC--SS
T ss_pred             CCCCCCCCCce--ecCCCeEEEEecCCEEEEE---ECCeEEEEECCCCCCCC-------CCcccCCCceE--EEcC--CC
Confidence            65433222111  1134677777655443333   59999999765432221       11011123443  3322  23


Q ss_pred             CEEEEEeCCCcEEEEeccC
Q 001258         1060 NEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1060 ~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      ..++..  ||.|+.|=-..
T Consensus       230 h~~al~--~g~v~~wG~n~  246 (282)
T 3qhy_B          230 YSLALK--NGKVIAWGSSR  246 (282)
T ss_dssp             CEEEEE--TTEEEEESTTC
T ss_pred             EEEEEE--CCEEEEecCCC
Confidence            445544  99999996544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.91  E-value=3.4  Score=46.28  Aligned_cols=110  Identities=10%  Similarity=0.086  Sum_probs=61.8

Q ss_pred             cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCC--CCCCCCceEEEccC---CcEEEEE--c----
Q 001258          903 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H----  971 (1113)
Q Consensus       903 ~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~spd---g~~l~~~--~----  971 (1113)
                      ...++|+|.|||+++++-...+.|++++..++....  .........  ........++|+||   +.+|.++  .    
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~--~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKT--VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE--EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE--EecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            457899999999988775544568888765443211  111111110  01235678999995   5555442  2    


Q ss_pred             --------CCeEEEEeCCcc-------ceee-ccccCCCCCCeeEEEECCCCCEEEEEeC
Q 001258          972 --------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       972 --------d~~v~v~d~~~~-------~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                              ...|.-|+....       +.+. .+. .........|+|.|||.+.++.+.
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence                    134555554321       1111 122 121235789999999987776554

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=93.89  E-value=7.9  Score=41.19  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=65.8

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC---CC
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  433 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  433 (1113)
                      .-...+.|+|.|||+ ++++-...|.|++++..+++......+             ..+.....+....|+|+||   +.
T Consensus        30 gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g   95 (347)
T 3das_A           30 GLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDH   95 (347)
T ss_dssp             CCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHC
T ss_pred             CCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCC
Confidence            457789999999998 566655589999998766553211000             0022334567899999995   34


Q ss_pred             eEEEE-e--CCCeEEEEEccCCc----e---eeeee-eee-cccCCeeEEEEcCCCCeeEEEEe
Q 001258          434 LFGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITC  485 (1113)
Q Consensus       434 ~las~-~--~d~~i~iwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~~~~~~~l~s~  485 (1113)
                      +|... +  .++.|.-|.+..+.    .   .+.+. .+. +....-..|+|.|||.  +.++.
T Consensus        96 ~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~  157 (347)
T 3das_A           96 MVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGT  157 (347)
T ss_dssp             EEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEE
Confidence            44432 2  34566667665521    1   11111 121 1112356799999997  45553

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.50  E-value=2.4  Score=50.67  Aligned_cols=194  Identities=10%  Similarity=0.080  Sum_probs=103.7

Q ss_pred             cCCCEEEEEe-C----CeEEEEECCCCceeeee-c-------CCCCCeeEEEEecCCCcEEEEEecCC------cEEEEE
Q 001258          828 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN  888 (1113)
Q Consensus       828 ~~~~~l~~~s-d----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~la~g~~dg------~v~iwd  888 (1113)
                      .++..++.|+ +    +.+.+||..+.+-...- .       .......++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            5666777665 2    45889998776533222 1       1111233334432 567888887543      588999


Q ss_pred             cccc--eeeeeecccccCeEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccccccccc----cCCCCCCCCCCCceEEE
Q 001258          889 VRVD--EVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQ----IPTGRTPTAQSDTRVQF  960 (1113)
Q Consensus       889 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~--~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~  960 (1113)
                      ..+.  +.+..+......- +++...+++.++.||.++  .+.+||..+..   +....    .+....    ....+.+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~---W~~~~~~g~~p~~r~----~~~a~v~  546 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEI---FKDVTPKDEFFQNSL----VSAGLEF  546 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTE---EEECCCSSGGGGSCC----BSCEEEE
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCc---eEEccCCCCCCCccc----ceeEEEE
Confidence            8873  3333322211111 222224788888888765  68899988743   22121    111111    1233555


Q ss_pred             ccC-CcEEEEE-c--C-----CeEEEEeCCccce------eeccccCCCCCCeeEEEECCCCCEEEEEeCC--------C
Q 001258          961 HQD-QIHFLVV-H--E-----TQLAIFETTKLEC------VKQWVPRESSAPITHATFSCDSQLVYACFLD--------A 1017 (1113)
Q Consensus       961 spd-g~~l~~~-~--d-----~~v~v~d~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--------g 1017 (1113)
                      ..+ ++.++.| .  +     ..+.+||+.+.+.      ............-.+++...++++++.|+.+        .
T Consensus       547 ~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~  626 (695)
T 2zwa_A          547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTN  626 (695)
T ss_dssp             ETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTT
T ss_pred             eCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCC
Confidence            655 5555554 3  2     3588999988772      1111100001111233333447788888743        4


Q ss_pred             cEEEEecCCCcee
Q 001258         1018 TVCVFSAANLKLR 1030 (1113)
Q Consensus      1018 ~v~vwd~~~~~~~ 1030 (1113)
                      .|.+||..+.+..
T Consensus       627 ~v~~yd~~t~~W~  639 (695)
T 2zwa_A          627 SIISLDPLSETLT  639 (695)
T ss_dssp             SEEEEETTTTEEE
T ss_pred             eEEEEECCCCeEE
Confidence            5999999987665

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=93.30  E-value=0.043  Score=49.94  Aligned_cols=63  Identities=19%  Similarity=0.260  Sum_probs=46.0

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhc
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS  131 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  131 (1113)
                      ++.. ++|+|+-|.||||+..| .++|..|+.+.-.-+...+.+.+++|..+....++..++...
T Consensus        31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~   93 (148)
T 2j49_A           31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVAS   93 (148)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHH
Confidence            5554 99999999999999999 999999998665555444556666666666555555544443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.30  E-value=9  Score=39.99  Aligned_cols=175  Identities=11%  Similarity=0.110  Sum_probs=103.6

Q ss_pred             EEEecCCCEEEEEe--C-------------CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--cCC--cE
Q 001258          824 FALSKNDSYVMSAS--G-------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDS--SI  884 (1113)
Q Consensus       824 l~~s~~~~~l~~~s--d-------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~--~dg--~v  884 (1113)
                      --++++|.+|+...  +             ..|+..+++..+...... .    .+..|++ +++.|+...  .++  .|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~----~~~~~s~-~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D----PCIYASL-IGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S----CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C----CccEEEE-eCCEEEEEeecCCCCceE
Confidence            45678999888775  2             257777877665333222 1    2336788 667777665  344  45


Q ss_pred             EEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          885 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       885 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      +.-++. +.....+..+..    .+|+++++.|.-.+. ..+|..-+++.+...  ..   ..+      . ....++|+
T Consensus       132 y~~~~d-Gs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~------~-~~~~~~P~  194 (302)
T 3s25_A          132 YRIRID-GEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDC------N-CYKPVVLD  194 (302)
T ss_dssp             EEEETT-SCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECS------C-EEEEEEEE
T ss_pred             EEEECC-CCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCC------C-ccceeeec
Confidence            555554 333445544432    456788988887765 567888887765432  11   111      1 22346799


Q ss_pred             CcEEEEEc---CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC--CCcEEEEecCCCc
Q 001258          964 QIHFLVVH---ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1028 (1113)
Q Consensus       964 g~~l~~~~---d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~--Dg~v~vwd~~~~~ 1028 (1113)
                      +.+|+.+.   ...|..-++....... +.    ...+  ..|+|++++|+-+..  .+.|..-+++...
T Consensus       195 g~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~  257 (302)
T 3s25_A          195 DTNVYYMDVNRDNAIVHVNINNPNPVV-LT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTG  257 (302)
T ss_dssp             TTEEEEEEGGGTTEEEEECSSSCCCEE-CS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCEEEEEEcCCCcEEEEEECCCCCeEE-Ee----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCCc
Confidence            99988742   2467777777655332 22    2233  448889999886542  3567777776543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.23  E-value=10  Score=40.47  Aligned_cols=165  Identities=12%  Similarity=0.163  Sum_probs=91.2

Q ss_pred             CCCcEEEEEcCCCCeEEEEEe-------------cCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  424 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs-------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  424 (1113)
                      ......+++.|+|.  +.+++             .+|.|.++|..+..... ..+.+-.     .+     +....-...
T Consensus        49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g-----~~-----~~~~~f~Ph  115 (355)
T 3sre_A           49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIG-----NT-----LDISSFNPH  115 (355)
T ss_dssp             CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCE-EECEEEC-----SS-----CCGGGCCEE
T ss_pred             CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccC-----CC-----CCcCceeee
Confidence            34567778899885  44444             68999999987432111 1111100     00     000122445


Q ss_pred             EEEEcC--CCC-eEEEEe-C--CCeEEEEEccCC-ceeeeeeeeecc-cCCeeEEEEcCCCCeeEEEEec----------
Q 001258          425 RVIWSP--DGS-LFGVAY-S--RHIVQIYSYHGG-DEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG----------  486 (1113)
Q Consensus       425 ~l~~sp--dg~-~las~~-~--d~~i~iwd~~~~-~~~~~~~~l~~h-~~~V~~v~~s~~~~~~~l~s~s----------  486 (1113)
                      .+.+.+  +|. +|.++. .  +.+|.||++..+ .......++.+. -...+.+++.++|.  +.++..          
T Consensus       116 Gi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~~~  193 (355)
T 3sre_A          116 GISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKS  193 (355)
T ss_dssp             EEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHHHH
T ss_pred             eeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccccc
Confidence            566644  454 454442 2  567889888754 223333344432 23578999999998  556543          


Q ss_pred             -------CCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEE-EEecCCcEEEEEcCC
Q 001258          487 -------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGKIKAWLYDN  542 (1113)
Q Consensus       487 -------~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~  542 (1113)
                             ..+.|..+|.  ++ +..+...-..-+.++|+++  ++.++ +-+..+.|..|++..
T Consensus       194 ~e~~~~~~~g~vyr~d~--~~-~~~~~~~l~~pNGia~spD--g~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          194 WEMHLGLAWSFVTYYSP--ND-VRVVAEGFDFANGINISPD--GKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHTTCCCEEEEEECT--TC-CEEEEEEESSEEEEEECTT--SSEEEEEEGGGTEEEEEEECT
T ss_pred             chhhccCCccEEEEEEC--Ce-EEEeecCCcccCcceECCC--CCEEEEEeCCCCeEEEEEECC
Confidence                   1234444543  43 3333333455688887654  44554 445678899999874

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.28  E-value=24  Score=38.49  Aligned_cols=247  Identities=9%  Similarity=0.022  Sum_probs=111.3

Q ss_pred             CCCccEEEEec--CCCEEEEEeCC----eEEEEECCCCceeeeec------C--------CCCCeeEEEEecCC-CcEEE
Q 001258          818 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA  876 (1113)
Q Consensus       818 ~~~v~~l~~s~--~~~~l~~~sdg----~i~vwd~~~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~la  876 (1113)
                      ...|.+|+++|  .+...+.+..|    .|...+ +.++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45688999998  55566555554    444332 2232222211      1        11247788888643 44555


Q ss_pred             EEecCCcEEEEEcccceeeeeecc-------------------cccCeEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcc
Q 001258          877 IGMDDSSIQIYNVRVDEVKSKLKG-------------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       877 ~g~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-~~~L~s~s~D~~v~iwd~~~~~~  936 (1113)
                      ++...+.|...+ ..++.-..+..                   ....|.+|.+.|. ...|..+..++.|...+- .++ 
T Consensus       133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~-  209 (394)
T 3b7f_A          133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGT-  209 (394)
T ss_dssp             EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESS-TTS-
T ss_pred             EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECC-CCC-
Confidence            566666655442 22222222210                   1235788999873 344444444443443322 111 


Q ss_pred             cccccccc-CC-CCCC-----CCCCCceEEEccC-CcEEEEEcCCeEEEEeCCccceeecccc-CCC--CCCeeEEEECC
Q 001258          937 QKNRFLQI-PT-GRTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVP-RES--SAPITHATFSC 1005 (1113)
Q Consensus       937 ~~~~~~~~-~~-~~~~-----~~~~i~~~~~spd-g~~l~~~~d~~v~v~d~~~~~~~~~~~~-~~h--~~~v~~l~~s~ 1005 (1113)
                       ....... .. ...+     ....+..+++.|+ ...+.++..+.|...+- .++.-..+.. ...  ...+.+++++|
T Consensus       210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p  287 (394)
T 3b7f_A          210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ  287 (394)
T ss_dssp             -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred             -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence             1111110 00 0000     0024678888886 35555555555555442 2322222211 011  13456788876


Q ss_pred             -CCCEEEEEeC-----------CCcEEEEecCC-CceeeecCCCcccCCCcc-cCccceEEEEeCCCCCEEEEEeCCCcE
Q 001258         1006 -DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVS-SNVHPLVIAAHPQEPNEFALGLSDGGV 1071 (1113)
Q Consensus      1006 -dg~~l~s~~~-----------Dg~v~vwd~~~-~~~~~~~~~~~~~~~gh~-~~v~~i~~~~~p~d~~~l~s~~~Dg~v 1071 (1113)
                       +...|+++..           ++...||.... |+.-..+.  ..++.... ..+....+++.|.++..|..++.++.|
T Consensus       288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence             3344544432           33345555443 33333332  11221100 011112367777666667667666664


Q ss_pred             E
Q 001258         1072 H 1072 (1113)
Q Consensus      1072 ~ 1072 (1113)
                      .
T Consensus       366 ~  366 (394)
T 3b7f_A          366 W  366 (394)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.74  E-value=33  Score=36.82  Aligned_cols=156  Identities=8%  Similarity=0.086  Sum_probs=87.1

Q ss_pred             CeEEEEECCCC--ceeeeecCC------CCCeeEEEEe---cC---CCcEEEEEe-cCCcEEEEEcccceeeeeeccccc
Q 001258          839 GKISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSK  903 (1113)
Q Consensus       839 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~la~g~-~dg~v~iwd~~~~~~~~~l~~h~~  903 (1113)
                      -+|.+||+.+.  +.++++.-.      .+.+..+++.   |.   ++.++..+. ..+.|.|||+.+++..+.+..+  
T Consensus       123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--  200 (381)
T 3q6k_A          123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--  200 (381)
T ss_dssp             CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred             ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence            35777888887  777665422      3357778887   21   134444444 4678999999998877665322  


Q ss_pred             CeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC----CcEEEEEcCCeEEEEe
Q 001258          904 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFE  979 (1113)
Q Consensus       904 ~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd----g~~l~~~~d~~v~v~d  979 (1113)
                            |.|+.....+.  +|.-..|.                      ..+..+++||+    ++.|....-..-++|.
T Consensus       201 ------~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~  250 (381)
T 3q6k_A          201 ------FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYS  250 (381)
T ss_dssp             ------GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEE
T ss_pred             ------CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEE
Confidence                  34442121111  23222221                      24678899988    7777775333334444


Q ss_pred             CCcc-----c---eeeccccCCCCCCeeEEEEC-CCCCEEEEEeCCCcEEEEecCC
Q 001258          980 TTKL-----E---CVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1026 (1113)
Q Consensus       980 ~~~~-----~---~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~Dg~v~vwd~~~ 1026 (1113)
                      +.|.     .   .+..+-..+-...-..+++. .+|.+.++--....|..|+..+
T Consensus       251 V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          251 VNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            3321     1   11111111111233456675 5777777777788899999875

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=86.70  E-value=12  Score=44.71  Aligned_cols=195  Identities=11%  Similarity=0.062  Sum_probs=100.3

Q ss_pred             CCcEEEEEecC----CcEEEEEcccce--eee-e-----ecccccCeEEEEEcCCCCEEEEEeCCC------cEEEEeCC
Q 001258          871 DNNIIAIGMDD----SSIQIYNVRVDE--VKS-K-----LKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSD  932 (1113)
Q Consensus       871 d~~~la~g~~d----g~v~iwd~~~~~--~~~-~-----l~~h~~~V~~l~~s~d~~~L~s~s~D~------~v~iwd~~  932 (1113)
                      ++.+++.|+.+    ..+.+||..+++  .+. .     +......-..+.+..+++.++.||.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            66777777754    368888887653  222 1     111111122333322777888887543      47788887


Q ss_pred             CCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-cCC--eEEEEeCCccceeeccc---cCCCCCCeeEEEECCC
Q 001258          933 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWV---PRESSAPITHATFSCD 1006 (1113)
Q Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d~--~v~v~d~~~~~~~~~~~---~~~h~~~v~~l~~s~d 1006 (1113)
                      +.+=..  ....+..     ..-..++.-.+++.++.| .++  .+.+||..+.+....-.   .......-.++.+..+
T Consensus       477 t~~W~~--~~~~p~~-----R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          477 TREWSM--IKSLSHT-----RFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTEEEE--CCCCSBC-----CBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCcEEE--CCCCCCC-----cccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            732111  1111111     111233333477777773 322  79999998876543321   0001112233555555


Q ss_pred             -CCEEEEEeC--C-----CcEEEEecCCCce-----eeecCCC-cccCCCcccCccceEEEEeCCCCCEEEEEeCC----
Q 001258         1007 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPS-AYLPAGVSSNVHPLVIAAHPQEPNEFALGLSD---- 1068 (1113)
Q Consensus      1007 -g~~l~s~~~--D-----g~v~vwd~~~~~~-----~~~~~~~-~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~D---- 1068 (1113)
                       +++++.|+.  +     ..+.+||+.+...     ...+... .....+|.       +.... ++.+++.|+.+    
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~-------~~~~~-~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQ-------IKYIT-PRKLLIVGGTSPSGL  621 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCE-------EEEEE-TTEEEEECCBCSSCC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccce-------EEEeC-CCEEEEECCccCCCC
Confidence             677777775  2     3588999988772     1111100 00001111       12221 36777887743    


Q ss_pred             ----CcEEEEeccCCC
Q 001258         1069 ----GGVHVFEPLESE 1080 (1113)
Q Consensus      1069 ----g~v~vW~~~~~~ 1080 (1113)
                          ..+.++|+.+.+
T Consensus       622 ~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          622 FDRTNSIISLDPLSET  637 (695)
T ss_dssp             CCTTTSEEEEETTTTE
T ss_pred             CCCCCeEEEEECCCCe
Confidence                468899998865

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.56  E-value=17  Score=40.57  Aligned_cols=114  Identities=11%  Similarity=0.047  Sum_probs=61.4

Q ss_pred             cCeEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccccccCCCCC-----CCCCCCceEEEccC----CcEEEE-Ec
Q 001258          903 KRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VH  971 (1113)
Q Consensus       903 ~~V~~l~~s~d~~-~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~spd----g~~l~~-~~  971 (1113)
                      ...+.|+|.|||. .|+.+...|.|++++.+... .......+.....     ........++|+|+    +.+.++ +.
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~-~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEI-FKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCB-CSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCe-eeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            4568999999996 45556778999999754321 1111111111000     01135678999997    443333 32


Q ss_pred             C------------CeEEEEeCCcc----------ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCC
Q 001258          972 E------------TQLAIFETTKL----------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1017 (1113)
Q Consensus       972 d------------~~v~v~d~~~~----------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg 1017 (1113)
                      +            ..|.-|.+..+          +.+..+...........|+|.|||.+.++.++.+
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            1            13444555321          2222222112233468999999998777766443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=82.46  E-value=66  Score=35.74  Aligned_cols=115  Identities=13%  Similarity=0.122  Sum_probs=60.8

Q ss_pred             CCcEEEEEcCCCC-eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCccccccccc----CCCcceEEEEEcCC--
Q 001258          359 SSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK----DPGVSVNRVIWSPD--  431 (1113)
Q Consensus       359 ~~V~~~~~spdg~-~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~spd--  431 (1113)
                      ...+.|+|.|||. ++++ +...|.|++++.... .... .  +.++.       ..+..    +..+....|+|+|+  
T Consensus        14 ~~P~~~a~~pdG~~rl~V-~er~G~i~~~~~~g~-~~~~-~--~~~~~-------~~~~~g~~~~~e~Gllgia~~P~f~   81 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFI-LEKEGYVKILTPEGE-IFKE-P--YLDIH-------KLVQSGIKGGDERGLLSLAFHPNYK   81 (463)
T ss_dssp             SSEEEEECCSSSSCCEEE-EETTTEEEEECTTSC-BCSS-C--SEECT-------TTBCCCCSSSCCCSEEEEEECTTHH
T ss_pred             CCceEEEECCCCCeEEEE-EeCCceEEEEeCCCC-eeee-e--ecCCc-------ceeccCccccCCCcceeeEeCCCCc
Confidence            5669999999995 5454 467899999975422 1100 0  01110       00111    22467889999996  


Q ss_pred             --CCeEEEEeC--C----------CeEEEEEccCC--c-----eeeeeeeee--cccCCeeEEEEcCCCCeeEEEEec
Q 001258          432 --GSLFGVAYS--R----------HIVQIYSYHGG--D-----EVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCG  486 (1113)
Q Consensus       432 --g~~las~~~--d----------~~i~iwd~~~~--~-----~~~~~~~l~--~h~~~V~~v~~s~~~~~~~l~s~s  486 (1113)
                        +.+.++-+.  +          ..|.-|.+..+  .     ..+.+..+.  .....-..|+|.|||. +|+.+|.
T Consensus        82 ~n~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd  158 (463)
T 2wg3_C           82 KNGKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD  158 (463)
T ss_dssp             HHCEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred             CCCEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence              444444332  1          13444666432  0     111221221  1122468999999997 3444443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=82.34  E-value=47  Score=34.00  Aligned_cols=184  Identities=8%  Similarity=0.013  Sum_probs=99.3

Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .|..++...+-..++  .||.|..|-......+-....-...|..++...   ...+.-. ||.|+.|-....-.+..-.
T Consensus        64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            566777654433333  489999998664322211111124577777654   3334445 9999999765422222212


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  979 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d  979 (1113)
                      .....|..++...+.. ++ -. |+.|+.|-........ .+...       ...|..++...+... +. .++.+..|-
T Consensus       138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-~p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-VPAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-CCGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-Cceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence            2345677777754433 23 33 7999999766532221 11111       023555555444333 33 689999997


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1027 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~ 1027 (1113)
                      ......+..-.  .....|..++-..+..++++   ||.|+.|=....
T Consensus       205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence            65433222111  11345777776555444333   999999976654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1113
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	8e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-08
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	9e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	5e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 85.2 bits (209), Expect = 5e-18
 Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)

Query: 317 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 376
           ++L    +P +    ++ +      + P ++   + ++L+  S    + F       L  
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79

Query: 377 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
           G N     ++ V S   LV R             L  +      + +  V +SPDG    
Sbjct: 80  GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 437 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 459
                 +++I+                                          D      
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 512
            +   +          P     +     D+ ++VWD+  G       ++     GH+  V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 572
           YSV        Q + S +LD  +K W   N  ++ D + P      + Y           
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313

Query: 573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 628
                  V         L+   D  + FWD  S   L  +         +  +       
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 629 DGCLLAVSTNDNGIKI 644
           +  + A  + D   +I
Sbjct: 367 EYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 1e-13
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
               ++   P     +  G+    + +W+  +              G     L +     
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250

Query: 419 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 467
            G   SV  V+++ DG           V++++    +        ++             
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 468 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 523
           V  +A +  ++   +++   D+ +  WD  +G    + +GH   V SV   +  ++    
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 524 QFIFSTALDGKIKAW 538
               + + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.4 bits (142), Expect = 1e-09
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 818 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 864
           +++V     +++   V+S S    + L+N+      +    P                  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 865 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 918
           +A    ++  I  G  D  +  ++ +       L+GH   +  +A ++        NV  
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 919 SSGADSQLCVWS 930
           +   D +  +W 
Sbjct: 373 TGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.7 bits (140), Expect = 2e-09
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 786  NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 845
            +  GK  A+ A         I     V      E              + +  G  ++  
Sbjct: 130  SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 846  M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 897
              +     +  +      T +A  P D   IA G  D ++++++        R+D     
Sbjct: 190  WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 898  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 955
              GH   +  + F+     +VS   D  + +W+      + +           T      
Sbjct: 250  GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 956  --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 1008
                V   Q+  + L   +   +  ++      +       +S    A    ++   +  
Sbjct: 310  FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 1009 LVYACFLDATVCVFS 1023
            +      D    ++ 
Sbjct: 370  VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.7 bits (135), Expect = 8e-09
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 482
           +   DG           V+++    G  V     ++     H   V  + F+   + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269

Query: 483 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 532
           ++   D+++K+W+  N   +   +   +    V     ++           ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 533 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 592
             +  W   +    +  +       ++A +                        N F   
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374

Query: 593 GDDFSIKFWDMDSV 606
             D   + W    +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (130), Expect = 3e-08
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
            S  S+ F       ++ G+    + LW + +                 +          
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306

Query: 419 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 474
               V  V  + +            V  +    G+ +     +  H   V  +A +    
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363

Query: 475 -HPNKQLCVITCGDDKTIKVWD 495
             P   +   T   D   ++W 
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 507
           H   V  + FS+  + L     G +KT +V+  ++G+                       
Sbjct: 61  HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 508 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 565
              +  + SVC     + +F+ + A D  I+ W  +N    +  +   +   ++ Y   G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 566 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 604
            +   G   R++                      V           A   D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 605 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659
           +  L+  +D++       +     + F +DG  +   + D  +K+    +      +   
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 710
            +     T    K  +  ++         +G  DR            ++ + G    V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 711 LADVK--------PRITEESNDKS-KVWKLTEL 734
           +A                 S D   ++WK  ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 7/247 (2%)

Query: 859  PPAATFL-AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS----KLKGHSKRITGLAFSHA 913
             P   FL     Q          +    +YN  +         K   H+  +  + FS+ 
Sbjct: 14   KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73

Query: 914  LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 973
               L  +G +    V+                  + P   + +        I  +     
Sbjct: 74   GEYLA-TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132

Query: 974  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1033
                  T   + + +    E+   +               F      V  + +  +R   
Sbjct: 133  G-KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 1034 NPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGS 1093
              +      +S       +A  P +    A G  D  V V++         +    ++G+
Sbjct: 192  LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGT 251

Query: 1094 TSSMPAT 1100
                   
Sbjct: 252  GHKDSVY 258

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 4e-17
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 400 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 457
           K+WD+  G C               +N + + P+G+ F         +++      E+  
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
           +   D  + G+  ++FS   + L  +   DD    VWDA    +  +  GH+  V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 518 HHKENIQFIFSTALDGKIKAW 538
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-15
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 771 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 830
           +  +  L     T    SG   AS   +LW    G+      T +  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 831 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 887
           +   + S     ++            +        T ++F      ++  G DD +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 888 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
           +    +    L GH  R++ L  +     + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.8 bits (182), Expect = 8e-15
 Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)

Query: 338 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 393
           SQ  +  + + +      RTL    +   +M +      LL+  +  G + +W+  +  +
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89

Query: 394 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 453
           +     +   +  C+       V   G+     I++       V  SR +     Y    
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 454 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 492
                 +I    G      +     Q                        ++   D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 493 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 552
           +WD   G  +  F GHE+ + ++C     N     + + D   + +        + Y   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
              C   +                   V F  +    LA  DDF+   WD         +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 613 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
                  +   +    DG  +A  + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (161), Expect = 4e-12
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)

Query: 867  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 926
                D  +   G  D+S ++++VR    +    GH   I  + F    N   +   D+  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 927  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 985
             ++     ++                   T V F +     L  ++     +++  K + 
Sbjct: 251  RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 986  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1023
                        ++    + D   V     D+ + +++
Sbjct: 305  AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 8e-10
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  +  +PD  LF         +++    G   +       H   +N I F        
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             T  DD T +++D     +   +               ++ + + +   D     W   
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
                          + +  + DG                             D  +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339

Query: 602 D 602
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)

Query: 624 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 683
           + F+    ++  ++ D  IK+     G    RT +   +  S    +   +   +++ +A
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79

Query: 684 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 743
                         + ++ G + +V S++ +       S  + K  K+ E+      ++ 
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 744 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 803
                              G  I + +++    +W     E  +  +    V   +    
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192

Query: 804 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 862
                 +  +  +           K   +++S S    I ++++ T   + T +      
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 863 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
             + FH      I    DD ++++++ +       L  H   +T L F      +V+   
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 923 DSQLCVW 929
           D  + VW
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.5 bits (163), Expect = 2e-12
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V  + F      +  ++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 572
             +    S  +  K+  +        +          ++        + S D T      
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 573 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 621
           +           +  + +V+ +       +  +D +++ W + + +    +     +   
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 622 PRIRFNKDGCLLAVSTNDNGIKILATSDG 650
             I +  +    ++S         +   G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V  V++   G           ++++ Y     ++    ++AH   V  + F      + 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304

Query: 482 VITCGDDKTIKVWD 495
            +T   D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            V RVI+ P  S+   A     ++++ Y  GD  R    +  H   V DI+F H  K L 
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
             +      +  +      +      H     S+ P+       I S + D  IK W   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 598
                  +     W   +  + DGT        +++ V    T + +            I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 599 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 658
            +    S   ++          S   +  K G  L   + D  IK+   S G   L T  
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244

Query: 659 N 659
            
Sbjct: 245 G 245

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 6e-08
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 822 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 870
                +++ + + S S    + ++ + T +  A           +++ P+          
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 871 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921
                        +  G  D +I++++V        L GH   + G+ F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 922 ADSQLCVWSSDGWEKQK 938
            D  L VW        K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 2e-05
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 10/207 (4%)

Query: 863  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 922
            T + FHP   +++    +D++I++++    + +  LKGH+  +  ++F H+  +L S  A
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 923  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 982
            D  + +W   G+E  +          + +   +        +   + + E Q        
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131

Query: 983  LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042
                           +     + D  L+ +C  D TV V+  A  + +  +    ++   
Sbjct: 132  -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 1043 VSSNVHPLVIAAHPQEPNEFALGLSDG 1069
            +S        +      +E       G
Sbjct: 191  ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 23/44 (52%)

Query: 895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
           K  L GH   +T + F    +V+VS+  D+ + VW  +  + ++
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER 53

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.3 bits (170), Expect = 4e-13
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 863  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 920
            +  A++  D   IAI  ++  + IY    ++     +LK H+ ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 921  GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 980
            G D    VW+  G   +    +          +     +               +  FE 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126

Query: 981  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1038
                 V + + +   + +    +  +S L+ A   D    +FSA   ++  R  P+ +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.0 bits (159), Expect = 8e-12
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            ++   W+ D +   +  + H V IY   G   V+ H E+  H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            +TCG D+   VW       +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
                   +   +   +   S D           S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 3e-06
 Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 639
             ++  + +     ++  +  ++    + +   +          + +  D   +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 640 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 699
               +                   A+R    +         + +   +           V
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 700 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 753
                     ++  +              + K +++         +         +    
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191

Query: 754 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 813
                 ++S   +  +  +A      W   +              L      + +    +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241

Query: 814 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 873
           ++ P   +         S V +       LF   +     +F          +       
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297

Query: 874 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 929
                  D                   H   ++ ++         +   ++G D  + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 930 SSDGWEKQ 937
                E  
Sbjct: 357 DVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 6e-06
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 361 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 420
            +          LL  G+      ++    +E         W        L        G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
             V+ V +S +GS          V +        V       +    +  + F   +   
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 540
            ++  G D    ++   + A +  F G            +          LD K  +   
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313

Query: 541 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 600
              G+ +D        + ++  + G                     ++F   G D  +  
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355

Query: 601 WDMDSVQ 607
           WD+ S++
Sbjct: 356 WDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 452 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 502
           G           H   V+ I+     K  C    T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 5e-11
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 520
           +  H   V          ++  ++  DD T+KVW A  G       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 567
             I       L                                 G+             +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 568 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 627
                      V        R ++   DF +K WD ++   L ++        +      
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184

Query: 628 KDGCLLAVSTNDNGIKI 644
            DG  +   + D  I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (144), Expect = 5e-10
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)

Query: 327 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 386
           +  GH+     SQ          T        +            T  +   ++ +  + 
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 387 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
                  L + + +        M   AA+          V  + D  +  V        +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170

Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
           ++  G       L+ D                   V++   D +I+VWD   G   +   
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
           GH++    +          + S   D  +K W           + P +  + +       
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265

Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 623
                              KN  + + DD ++K WD+ +   ++ L ++++ G      R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 624 IRFNKDGCLLAVSTNDNGIKI 644
           IR +    + AV + +   + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
            + +VWD+   +      +    G            ++     +   V+I+    G  ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 511
                + H   V  + F+       VIT  DD T+K+WD   G            G    
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 512 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 541
           V+ +   +          + +G  + K  + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 6e-05
 Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 813 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 872
           T +  +       L  ++  V   +   + ++++ T + + T   P    + +     + 
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 873 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 923
           N +    DD ++++++++  E    L      G    +  +  S+   V      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 924 SQLCVWSSD 932
           ++L V   D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 25/209 (11%), Positives = 57/209 (27%), Gaps = 28/209 (13%)

Query: 866  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 925
                   N I  G DD+++++++    +    L GH+  +                 D+ 
Sbjct: 22   CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69

Query: 926  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 985
            +   S+D   K  N              S  R     ++       +  L +++    +C
Sbjct: 70   IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 986  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045
            +   +   ++              V +   D  V V+          +            
Sbjct: 130  LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175

Query: 1046 NVHPLVIAAHPQEPNEFALGLSDGGVHVF 1074
              H   + +   +      G  D  + V+
Sbjct: 176  --HTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 4e-10
 Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 510
            AH   +  ++  +       ++C  D  +KVWD      +   +            H  
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 511 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
            V          +  + +T+  G +  +         D      +       +D  +   
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120

Query: 571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 625
            F     G        +R +A     +   W       +S  L  +      L  +    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 626 FNKDGCLLAVSTNDNGIKILATSDG 650
                   +V  ++ G+     ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)

Query: 501 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
           K +I      + H+A ++SV   +     F  S + DG +K W    L +    +     
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 613
                                L  ++ D  +   +A       + F+ +    +    I 
Sbjct: 57  F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 614 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 671
               L  S   + +        S +      L      G   +  F   A +++  + N 
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167

Query: 672 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 730
            PT+                 +   ++ S    +    S+    +  I    N+ +    
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210

Query: 731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 790
                 P      +      +  I  + F+  G+ +     +          TE      
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 791 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 850
           + +               ++ V                 ++   +   GK+  +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 851 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 906
            + T              LA     +++   G+ D                +K   K   
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366

Query: 907 GLAFSHALNVLVSSGADSQLCVWSSDG 933
               +     L     D  +  +   G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-06
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)

Query: 328 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 387
                 S+S +  +S   +L  TV   +       S+D     + L+  G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211

Query: 388 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
           + +   L     +   +   +            +       +  G +             
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 507
                   +  L   AH   V  ++F+   +   + + G D  ++ WD     +      
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329

Query: 508 HEAPVYSVC 516
           H   +    
Sbjct: 330 HCDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 8e-06
 Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)

Query: 578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 637
            +       +  ++   D  +K WD   +      D         +   +    L A+  
Sbjct: 16  DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74

Query: 638 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 694
           +   + ++AT+   G +   R             +           +  A    A     
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 695 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
            +  +    + G       +           S     +   E        +  +  AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
                  S   ++A   N   +      T R                  S I  +N +  
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236

Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 866
                     A++ + +     +  +      +        + +              L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 867 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 922
           F+      +     D  ++ ++V+  E  + L  H   I      LA     + L   G 
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354

Query: 923 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 963
                V+     +K     +      +      D  +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 521
           HV  +  I        L   T      +  +  T   +       +  +           
Sbjct: 65  HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 522 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 570
                          + +T + G    W +         +         + + +   T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178

Query: 571 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 603
                S      D ++   +A G ++ +++  ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.9 bits (143), Expect = 6e-10
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 522
           H   ++ I   + +  +  +  G +    +++  +G             ++SV    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 523 IQFIFSTALDGKIKAWLYD 541
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 4e-08
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)

Query: 455 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
           V Q   +  H+  V        N    VIT  DDK I+V+D+ N        GH+  V++
Sbjct: 2   VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 574
           +   H      + S               GS                             
Sbjct: 59  LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

Query: 575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 632
                +         +    D ++  W +     +     +   P            +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 7e-07
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 902
                      F       + +      +NI+  G ++    IYN+R  + V + +   +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324

Query: 903 KRITGLAFSHALNVLVSSGADSQLCVWSSD 932
            +I  + F     ++ +   D Q  +   D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            ++N +  G DD  I++Y+    +   +L GH   +  L ++H   +LVS   D  + VW 
Sbjct: 22   EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 931  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
                           T R          ++   +       +  L +++  K   V    
Sbjct: 81   IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 991  PRESSAPITHATFSCDSQLVYACFLDATVC 1020
                   + H        +       A+V 
Sbjct: 136  EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 456 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 514
           R  L+ I         +     + Q  +++   D TIK+WD      + I  GH   V  
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 567
           +    +  I     + +                  EA              ++       
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 568 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
                      +        V   D      ++A  D +IK W+  + + + +++     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKI 644
                        L+   ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 467 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 526
           G          +   V++   D TI++WD   GA   + EGH      +    + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231

Query: 527 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 586
            S A DGKIK W  D + +       G  C          RT      R   + QFD  +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277

Query: 587 NRFLAAGDDFSIKFWD 602
            + +++  D +I  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 809 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 867
           T +   +          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 868 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 918
              DN  I  G  D  I+++++                 L  HS R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281

Query: 919 SSGADSQLCVW 929
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 459
           ++WD+   +      L    G          D            ++++      + R   
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 460 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 495
                  +  H G V  + F    +   +++   D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 27/205 (13%), Positives = 62/205 (30%), Gaps = 24/205 (11%)

Query: 871  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
            D+  I  G+ D++I+I++    E K  L GH+  +  L +   + +             S
Sbjct: 24   DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72

Query: 931  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 990
            SD   +  +                       + +      +  +A+++      +    
Sbjct: 73   SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 991  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050
                           D + + +   D T+ V++ +  +    +N             H  
Sbjct: 133  VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG------------HKR 179

Query: 1051 VIAAHPQEPNEFALGLSDGGVHVFE 1075
             IA           G SD  + +++
Sbjct: 180  GIACLQYRDRLVVSGSSDNTIRLWD 204

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 2e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            +  + + P G    V      V++   +         ++  H   V  + F++  K   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
            ++ G D  +  W    GA  +      + V S      +  ++I + + D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 9e-08
 Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)

Query: 800 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 859
                 +     +   +    +          ++             +            
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265

Query: 860 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 919
                L F             D+ +  +         +    S  +     S     +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 920 SGADSQLCVWS 930
              D +  V+ 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 31/314 (9%), Positives = 77/314 (24%), Gaps = 49/314 (15%)

Query: 353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GACSMP 410
            TLN G    ++      + +               G +        KVWD+       P
Sbjct: 46  NTLNHGEVVCAVTISNPTRHVY-------------TGGK-----GCVKVWDISHPGNKSP 87

Query: 411 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 470
           +      +    +      PDG    V      + I+         +     +       
Sbjct: 88  VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYAL 147

Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 530
                        + G+     + +     +  + +       + C     +   +++  
Sbjct: 148 AISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCIDISNDGTKLWTGG 202

Query: 531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV----------- 579
           LD  +++W          ++       ++ Y   G     G    ++ V           
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQL 261

Query: 580 ---------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG 630
                    ++F      F++ G D  +  W       +        + +      + D 
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLS---CDISVDD 318

Query: 631 CLLAVSTNDNGIKI 644
             +   + D    +
Sbjct: 319 KYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
           + ++  G  F      +++  +    G  + Q          V     S  +K +  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324

Query: 486 GDDKTIKVWD 495
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 523
               +  + +    + L V       +       N   +Y    HE+ V S+   +    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278

Query: 524 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
            +  ST  D  + AW     G+ +          +   S D                   
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318

Query: 584 TTKNRFLAAGDDFSIKFWD 602
                 +    D     ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.9 bits (135), Expect = 5e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 464 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 522
           H   +  ++ S   K L   +   +  I  WD + G    +F + H   +  +    K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 523 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 563
           +  +     D  +K       G         +  +     A
Sbjct: 69  LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 428 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 487
           WSPD          + V +++ +   +    ++    +  VN + + +      +++ G 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288

Query: 488 DKTIKVWD 495
           D  IK W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 475 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 532
                + + T   D ++ VW+    +     I   H     +      E    I S   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289

Query: 533 GKIKAW 538
             IK W
Sbjct: 290 SNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 893 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
            +     GH+K IT L+ S     L S+ A+  +  W        +
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 8e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 841 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 898
                               A         DN  +A G  D+S+ ++N+        +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 899 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 930
             H+              +VS+G DS +  W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 2e-08
 Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)

Query: 363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 422
            +   P +  LL             + S +  +     V+     +  +           
Sbjct: 16  DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58

Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 461
           +    +  +  L     +     +     G    Q L                       
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 462 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 497
                                   +++   V +  F+       +I   ++  ++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 498 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 555
                          Y +       +  +    +++DG++    +D+ G   +     + 
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235

Query: 556 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 615
                +  +   T   +   S   ++F         AG D  I  W++ + + + +    
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290

Query: 616 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
                   ++      +L ++T+D+  K 
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 6e-08
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 457 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 512
           Q ++I  A    ++DI        L  +    D ++ V+     AK         ++ P+
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 513 YSVCPHHKENIQFIFST 529
                    ++Q    T
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)

Query: 423 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 470
            +  +   +   +  +     V +  +    +             R +L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 529
           I FS  +K L   T G D  I  W+     K   F   +E  V  +          +   
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 530 ALDGKIKAW 538
             D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-06
 Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)

Query: 422 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 481
            ++ +   P  SL  +      + +Y +    +    L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71

Query: 482 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 541
            I  G  +   +     G+  +    +      +C   K     + + + DG I+     
Sbjct: 72  -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 542 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 601
           N G  V          T   +   T                    +R +   ++  ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175

Query: 602 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 659
            +   +       + GL    R      K+    A S+ D  + +    D      + + 
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 660 LAYDASRTSENSKPTISPISAAA 682
            A+   R +        P+++  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 40/377 (10%), Positives = 78/377 (20%), Gaps = 39/377 (10%)

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 638
                     +      ++   D+ S  +  S          P       D     V  N
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59

Query: 639 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 698
             G       D  +        +             ISP      A        +    +
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 699 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 758
                         + KP  T     +  +                              
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151

Query: 759 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 818
             + G+  +A        +   + T                         +     S   
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210

Query: 819 EAVPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI 877
                     +     +A         ++ T KT            F       +     
Sbjct: 211 --YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY 268

Query: 878 GMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ 937
               + +  Y+++  ++             +AF    + L   G  + L V++ D  EK 
Sbjct: 269 -GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV 326

Query: 938 KNRFLQIPTGRTPTAQS 954
           KN  +++P G   T   
Sbjct: 327 KN--IKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.4 bits (124), Expect = 2e-07
 Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)

Query: 352 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 411
           +  +     P +    P  +T  ++  + GDI   ++ + +     N             
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

Query: 412 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 471
             A+   P         +P   L      +               + +        V  +
Sbjct: 93  SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 472 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525
             +              +     K        N  ++          +       E    
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 585
                     +     +L             T     AD T  Y              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261

Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 645
           K+     G    +  +D+   +L+ + +          + F+K G  L +    N + + 
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318

Query: 646 ATSDG 650
                
Sbjct: 319 NPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.8 bits (112), Expect = 4e-06
 Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)

Query: 358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 417
           G S  S    P     +    N           +   +    +V+               
Sbjct: 88  GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142

Query: 418 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 460
            P   V  +  + DGSL+      + + + +          +  R+             +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 461 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 519
              H   +        + +    T          D  T       F       ++     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 579
           K+  Q         ++  +        +           +A+   G + Y          
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307

Query: 580 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
                        G    +  ++ D+++ + +I   GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 6e-04
 Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)

Query: 321 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 380
           V ++  +  G  +           +      T  L   +        P         +  
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 381 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 431
            +  +    +R +   ++             DL       Q             +    D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263

Query: 432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 491
            +   +    + +  Y       ++              +AF     +L     G    +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315

Query: 492 KVWDATNGAK 501
            V++     K
Sbjct: 316 AVFNPDTLEK 325

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.004
 Identities = 22/193 (11%), Positives = 42/193 (21%), Gaps = 20/193 (10%)

Query: 471 IAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFST 529
            A    ++ +  I       + V D  +    +      +    +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 530 ALDGKIKAW------LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 583
              G I            +          GR   + A S DG   Y              
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY---------ATVNP 109

Query: 584 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK 643
           T +           ++ +          +           +R   DG  L V+  D    
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYVAGPDIYKM 168

Query: 644 ILATSDGIRLLRT 656
            + T      L  
Sbjct: 169 DVKTGKYTVALPL 181

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.4 bits (126), Expect = 7e-08
 Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)

Query: 359 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 418
           +    + + P    +                  +   +R     D G   +P        
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 419 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 471
               V  V +SP               V ++ +    E          E     G ++DI
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 472 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 531
           ++    ++LCV+  G D         +G       GH   + +        ++ +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 532 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 586
              +         S  D        +   + +S D                    +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 587 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 624
                                  +F   G D +I+ WD+ + + +     D     + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 625 RF--NKDGCLLAVSTNDNGIKI 644
                 +G ++++S  D  +  
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 481 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 538
              T G D TI+VWD T     +++  +  +     V      N   I S +LDG +  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 851 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 902
           ++   +PP P+      T L++ P  N I       + ++  +    +V    +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 903 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 960
             +T + FS       L S     ++ VW     ++  +  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 961 HQDQIHFLVVH 971
             +     VV 
Sbjct: 124 DFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)

Query: 289 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 346
           PT  ++ YP G S  +    R +   D    PV    V FTGH  S   +  FS  +   
Sbjct: 27  PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 347 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 398
                     V           +     V+    ++   + DI     G R       R+
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 399 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 458
                +   S      +           +                V  Y           
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 459 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 518
                    V D+ FS  + +  +    D K       +    +YI +  E     +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 519 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
              + Q   +   D  I+ W         +   +        +   A G           
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307

Query: 577 LGVVQFDTTKNRFLAAGDDFSIKFWDM 603
                      R ++   D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 903
                F         P      A    D+   A    D++I++++V   +   K     +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 904 RITGLAFSHAL---NVLVSSGADSQLCVW 929
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (125), Expect = 9e-08
 Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)

Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 409
           T+T+ ++       M   P ++ L +       +  + +   +  +    +         
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80

Query: 410 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 469
                       S+  +     G    V          +          +++   + G +
Sbjct: 81  ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131

Query: 470 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 529
               S  N+ L V     D+      + +G            V    P H      +F  
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186

Query: 530 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 589
                      ++     + + P      +         +   R  +   +  D  ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245

Query: 590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 646
                   I  + +     + S +        PR    +  G  L  +    + I +  
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 510
           G DEV + +    H  G+  +  +       +I+   D  I  W +++       + H  
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 511 PVYSVCPHHKENIQFIFS 528
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 844 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 902
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 903 KRITGLAFSHALNVLVSSGADSQLCVWS 930
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 485
                +  L         + IYS     ++ + L   AH  GVN++ +  P+    +++ 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275

Query: 486 GDDKTIKVWD 495
           G D  IK W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 892 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 936
           DEV   + GH+K IT L  +     L+S   D ++  WSS    +
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 3e-07
 Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)

Query: 583 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 642
           D      +   D   I   D DS +++  ID  G        R +  G  L V   D  I
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85

Query: 643 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 697
            ++         +  E      +R+ E+             A A           +    
Sbjct: 86  DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 698 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 754
              +      V +     + +      S++  +     + +      + +  +NL  T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 814
               F   G       S+  + +     + + +   +       L               
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 815 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 874
            +P+           D  + S  G          +K +A        + F+  HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 875 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 914
                         S+ +++++  + K ++   +         KR+    ++        
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378

Query: 915 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 947
           +V       S L V      + +   K+  L  PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 5e-05
 Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)

Query: 345 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 403
            ++ ++    +     P           L  V   + G I L +  S++  +++      
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60

Query: 404 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 461
                           G +V+    S  G    V      + +         +V +    
Sbjct: 61  ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 462 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 521
                  +         +  +          + D      + I       V +   H + 
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
            +  I ++    +    + +  G  +          T+           G          
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213

Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 617
           +D++   F+ A ++ +         + L+++   G 
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)

Query: 586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 644
           ++  LA      +   D + + +   I      P          G +   +      +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 704
           +    G  L R   +   +  ++   +  +    + A   +     L         +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 705 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 759
           + +  S         +      + D SK++ L          +  L E+          +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 760 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 816
                  +     +  ++       R + + +               +G M   +V   +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 876
                     +K  ++        +  F++    ++    P P +   +     D + + 
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295

Query: 877 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 909
           +G     +  Y+    E K ++         LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 4e-04
 Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 405
            ++    +  S       P  +TL +  + V            R+ L + +         
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 406 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 462
           A       A  +D          +      +   V            +   +V       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 463 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 521
              G +    ++                +   D   G          +   +S   +  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 522 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 581
              F         ++++  +   + +          ++  S DG+  +            
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295

Query: 582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 629
                      G    +  +D ++++    +D  G      AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)

Query: 400 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 458
            V D    ++  +   + D G +    + +P G +     ++   +       G+ + + 
Sbjct: 14  VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 459 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 517
                     +    +  P+ +   I     +           +  +++           
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 518 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 569
             ++     ++         G+    +    G+ V+ +    W        D    +   
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 611
           +     +          +          +   D+++ ++                     
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 612 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 650
                        D +         LP S   +  + DG  + +      +        
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)

Query: 331 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 390
            S  +   +     +    T+       S        P    +     + G +      +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 391 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 447
           R+ +   +   +  G  +M L+   +       + V     + + +      + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 448 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 501
                  +++             +  S     +     G    +  +DA    K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)

Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 408
             +  +    S P  +   P       +   V      E G  +   +            
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
                  ++   +  +  +     + +  A  + ++  Y            ++      +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317

Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 500
            D+  S   K +  +   DD  I  +      
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 8e-06
 Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)

Query: 346 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 404
           D+  T    + +      +      +   + GT  GD +G+++  + +            
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 405 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 442
                                           + +     +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 443 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 498
             +   Y         +E            +D A +       +            D   
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 499 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 558
               +      +  + +                          N   +            
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 559 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 618
                  +            V         +  A +   +  +D+ + ++    +    L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 619 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 650
             S       D   + V  +D  I        
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)

Query: 860  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 919
            P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3    PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 920  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 979
             G      +   D    +  +F +                       F ++         
Sbjct: 60   HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 980  TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035
            T      +  +     S      A            ++   + V+     K+      
Sbjct: 120  TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)

Query: 588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 645
             +A          D+    +L     +       R     D  +  +     G  + I 
Sbjct: 16  DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71

Query: 646 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 705
               G             A     N K  +                 +     V      
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127

Query: 706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 765
             +                  K                    ++   KI      NS + 
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 825
             A  +++ +L +   R+   S  +   + + ++   P  I +     +          +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 885
            +                 +   ++ +          +                +   + 
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301

Query: 886 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 938
            Y+V+      K+      +T L  S     ++    D ++  +  +  E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)

Query: 428 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 486
           +SP DG L     SR    I    G   ++           +  +      K   +    
Sbjct: 10  FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 487 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 546
           +   + ++D   G K   FE +   V+++          + +   +              
Sbjct: 64  EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 547 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 606
                      T++ ++                      K+         +I  +DM+  
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169

Query: 607 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 666
           +      A           F+ D   L   +  +                          
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 667 TSENSKPTISPISAAAAAA 685
               +   + P S  + A 
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)

Query: 466 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 525
           G    +  + P         G   ++      +     I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 526 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 561
             S  + G ++ W        +    P         
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 4e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 862 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 921
           A  L   P   + I      S +    V           HS + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 922 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 967
               + +W +          + + +G       D+  +        
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 537
            + +   DKTIK+W+      +         E     +        Q + S + +G I  
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307

Query: 538 W 538
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.1 bits (102), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 845 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 903
               F+  +        + F      D   IA    D +I+I+NV   +V+  +   ++ 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 904 RITGLAFSHALNVLVSSGADSQLCVWSSD 932
               L        LVS  A+  +   + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 3e-04
 Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)

Query: 397 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 456
            +     +          +  +          SP G           V+I+       + 
Sbjct: 38  TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 516
           +   I    G V DI++   +K++  +  G ++   V+    G       G    + SV 
Sbjct: 95  KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 576
                  + I  +  +                 E      +             G     
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 577 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 609
           +     D TK                            +  +A  D +IK W++ ++++ 
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 610 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
            +I     +    ++        L   + +  I  
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)

Query: 420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 477
           G +V+    S  G    V      V +      +   V +                   +
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 478 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 537
           K              + D      + I             H +  +  I ++    +   
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 538 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 595
            + +      VDY       TT   +            R L     D +   F+ AA   
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228

Query: 596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
             +   D    +L+   D  G  P   R      
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 849
           + +  V       P+  M   D+               +N   V     G+I+L +  T+
Sbjct: 8   RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52

Query: 850 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 908
           +          A             + +   D  + + ++ + E  +  +         +
Sbjct: 53  EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 909 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 959
             S          +  +    Q  +   +  E +K +  +  T        + RV 
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)

Query: 419 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 468
            G  +   + + DGS    A +             V+++              DA    V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 469 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
                  + +   K L          + V D    A + + +  +               
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160

Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 578
             F    DG +    +   G+                    AYS    R         + 
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219

Query: 579 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 635
            +   +   +FL A +  +                +                        
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275

Query: 636 STNDNGIKILATSDGIRLLRTFE 658
            T    + +L    G   L  FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 5e-05
 Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)

Query: 322 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 381
                           +       ++  T               +      L+   T  G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216

Query: 382 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 436
            I   ++ S +   L   +         G      Q          +   +       + 
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274

Query: 437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 496
              +   V +     G+ + +          ++ I  S   K L       DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

Query: 497 TNGAKQYIFEGH 508
            +G +       
Sbjct: 331 ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)

Query: 409 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 468
           + +       P       +   DGSL  VA+        ++                  +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------I 197

Query: 469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 526
           N  A+S    +L   T      I   D ++G  +++   E       +         Q  
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 527 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 569
           +                           + D   G R+     G    ++  S D     
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 570 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 629
                              +  +  D ++   D +S + L S++  G  P    I     
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354

Query: 630 G 630
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)

Query: 538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 597
           ++ D    RV     G +      + DG+                 T  +R         
Sbjct: 31  FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79

Query: 598 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 657
           ++ +D  ++     I                D     V T                L   
Sbjct: 80  VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116

Query: 658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 717
                    +   +   +     A                 +     +       D    
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171

Query: 718 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 777
                 + +     TE+  P     +  P               S  A   +       +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218

Query: 778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 837
            +   +  ++          +  +              +         + + D +    +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 896
              + + +  T + +A F         +     +   + A+   D ++ I++    E   
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337

Query: 897 KLKGHSKRITGLAFS 911
            +         +  +
Sbjct: 338 SVNQLGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 349 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 401
             VT T+  GS+PM     P    + +   +  D+ + +  +   +              
Sbjct: 22  NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81

Query: 402 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 446
                                +     A     G S   +  SPDG    V  +      
Sbjct: 82  SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141

Query: 447 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 506
                   V   + +     G+               +        V +           
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196

Query: 507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 566
             EA    +  + +    ++ +        + +             G     +A + DG 
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256

Query: 567 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 612
           + Y                    +A     ++   D  +  +  ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.0 bits (94), Expect = 5e-04
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 421 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 480
            S   V      +                 G +++   + +         IA + P+ + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257

Query: 481 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 511
             +      T+ V D             + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 424 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 483
           + ++            +       +   G          ++    + I  +         
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331

Query: 484 TCGDDKTIKVWDATNGAKQYIFEGHEAP 511
                + + ++DA +   Q   E  + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)

Query: 419 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 464
            G  ++  +    GS F +A   ++R         V+++       +           + 
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 465 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 524
              V+ I     +  L +                 +   + +                  
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177

Query: 525 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 584
               +     + A       +                +     + Q  +    G++ +  
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 585 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 644
             +                           +        +   K+   + + T ++    
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 645 LATSDGIRLLRT 656
           LA ++    +  
Sbjct: 290 LAAAENTSSVTA 301

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.1 bits (91), Expect = 0.002
 Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)

Query: 808 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 866
              +  D      V    A  K  ++          +      +      P P     L 
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264

Query: 867 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 915
             P     IA G    ++ +  + ++D++          I              F    N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324

Query: 916 VLVSSGADSQLCVWSSDGWEKQ 937
              +   DSQ+C W+     K 
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1113
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.86
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.45
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.41
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.09
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.01
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.98
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.89
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.83
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.83
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.82
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.8
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.78
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.69
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.68
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.63
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.26
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.13
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.08
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.83
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.61
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.48
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.46
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.45
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.44
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.42
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.4
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.4
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.38
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.36
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.26
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.19
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.98
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.92
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.79
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	96.77
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.92
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.41
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	95.06
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.6
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.63
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	91.9
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.5
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.68
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	90.63
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.89
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	89.49
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	88.29
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	85.35
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	81.23
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.82

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-35  Score=327.09  Aligned_cols=293  Identities=13%  Similarity=0.163  Sum_probs=240.4

Q ss_pred             ceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          350 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       350 ~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      +...++.|.+.|+|++|||+|++ ||+|+ ||.|+|||+.+++....              .......+|.+.|.+++|+
T Consensus        43 ~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s  106 (337)
T d1gxra_          43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL  106 (337)
T ss_dssp             EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred             eEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence            44667789999999999999995 89987 89999999987654321              1112356899999999999


Q ss_pred             CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC
Q 001258          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  509 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~  509 (1113)
                      |||++|++|+.||.|++||+...... ....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|.
T Consensus       107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~  183 (337)
T d1gxra_         107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  183 (337)
T ss_dssp             TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            99999999999999999999865432 3336788999999999999999  79999999999999999999999999999


Q ss_pred             cCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEE
Q 001258          510 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  589 (1113)
Q Consensus       510 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  589 (1113)
                      ..|.+++|++  ++..+++++.|+.|++||+++.+....+. +...|.++                     +|+|+++++
T Consensus       184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l---------------------~~~~~~~~l  239 (337)
T d1gxra_         184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSL---------------------GYCPTGEWL  239 (337)
T ss_dssp             SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE---------------------EECTTSSEE
T ss_pred             cccccccccc--cccccccccccccccccccccceeecccc-cccceEEE---------------------EEccccccc
Confidence            9999999765  45799999999999999998765544332 33344444                     455555579


Q ss_pred             EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCC
Q 001258          590 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  669 (1113)
Q Consensus       590 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  669 (1113)
                      ++++.|+.+++||+.+++.....   .+...|.+++|+|++++|++++.||.|++||..++. .+..+            
T Consensus       240 ~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~------------  303 (337)
T d1gxra_         240 AVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQS------------  303 (337)
T ss_dssp             EEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEE------------
T ss_pred             ceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEc------------
Confidence            99999999999999988765443   334579999999999999999999999999988762 22111            


Q ss_pred             CCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCccc
Q 001258          670 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  749 (1113)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~  749 (1113)
                                                                                                     .
T Consensus       304 -------------------------------------------------------------------------------~  304 (337)
T d1gxra_         304 -------------------------------------------------------------------------------K  304 (337)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           1


Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEc
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKW  780 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~  780 (1113)
                      |...|.+++|+|++++|++++.||.|+|||+
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            5578999999999999999999999999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.3e-35  Score=323.31  Aligned_cols=305  Identities=18%  Similarity=0.318  Sum_probs=256.1

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  539 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  539 (1113)
                      +|+||.+.|++|+|+|+++  +|+||+.|++|+|||+.+++++.++.+|...|.+++|++  ++.++++++.++.+.+|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~--~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH--SGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECT--TSSEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeec--cccccccccccccccccc
Confidence            6899999999999999999  899999999999999999999999999999999999765  557999999999999999


Q ss_pred             cCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCC
Q 001258          540 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  619 (1113)
Q Consensus       540 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  619 (1113)
                      .........+..+...+..+.+++++.                     .+++++.|+.+++||+.+++.+..+..+  ..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~d~~~~~~~~~~~~~~~~~~~~--~~  144 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVSIMPNGD---------------------HIVSASRDKTIKMWEVQTGYCVKTFTGH--RE  144 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSS---------------------EEEEEETTSEEEEEETTTCCEEEEEECC--SS
T ss_pred             ccccccccccccccccceeeeccCCCc---------------------eEEeeccCcceeEeecccceeeeEEccC--CC
Confidence            988776666666666666666655554                     7999999999999999999999988766  44


Q ss_pred             CcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccccccc
Q 001258          620 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  699 (1113)
Q Consensus       620 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1113)
                      .+.+++|++++++|++++.|+.|++|+..++ .....+.+                                        
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~~----------------------------------------  183 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELRE----------------------------------------  183 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEECC----------------------------------------
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEEec----------------------------------------
Confidence            6899999999999999999999999998776 33222211                                        


Q ss_pred             ccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          700 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       700 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                                                                        +...+.++.++|++......          
T Consensus       184 --------------------------------------------------~~~~i~~~~~~~~~~~~~~~----------  203 (317)
T d1vyhc1         184 --------------------------------------------------HRHVVECISWAPESSYSSIS----------  203 (317)
T ss_dssp             --------------------------------------------------CSSCEEEEEECCSCGGGGGG----------
T ss_pred             --------------------------------------------------CCCCceEEEEeeccccceee----------
Confidence                                                              44567777777776422111          


Q ss_pred             ccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC
Q 001258          780 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  858 (1113)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~  858 (1113)
                                                           ............++.++++++ |+.|++||+.+++++..+.+|
T Consensus       204 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         204 -------------------------------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             -------------------------------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             -------------------------------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence                                                 111222334445778888888 899999999999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001258          859 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  930 (1113)
Q Consensus       859 ~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd  930 (1113)
                      ...|.+++|+| ++++|++|+.||.|+|||+.+++++..+.+|.+.|++++|+|++++|++|+.|++|+|||
T Consensus       247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 899999999999999999999999999999999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-35  Score=318.76  Aligned_cols=306  Identities=16%  Similarity=0.307  Sum_probs=264.0

Q ss_pred             EeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          353 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       353 ~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      .+.+|.+.|++++|+|+++ +|++|+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|+|++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG   71 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeeccc
Confidence            4556999999999999999 59999999999999999998776                   377899999999999999


Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      .++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            999999999999999998877554   5778999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE
Q 001258          513 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       513 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      .+++|++  ++.+|++++.|+.|++|++.+......+..+...+..+.+++++......... ..........+..++++
T Consensus       147 ~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         147 RMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred             eeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEec
Confidence            9999764  55799999999999999999999888999999999999999988644333322 23334455667889999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      +.|+.|++||+.+++++..+..|  ...|.+++|+|++++|++++.||.|++||+.++ +.+..+.              
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------  286 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------  286 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred             cCCCEEEEEECCCCcEEEEEeCC--CCCEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEc--------------
Confidence            99999999999999999998866  447999999999999999999999999998876 3333332              


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                                                  +|..
T Consensus       287 ----------------------------------------------------------------------------~h~~  290 (317)
T d1vyhc1         287 ----------------------------------------------------------------------------AHEH  290 (317)
T ss_dssp             ----------------------------------------------------------------------------CCSS
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2667


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                      .|++++|+|+++.|++++.||.|+|||
T Consensus       291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         291 FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            899999999999999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-34  Score=327.95  Aligned_cols=329  Identities=17%  Similarity=0.243  Sum_probs=245.0

Q ss_pred             EEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCce
Q 001258          375 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE  454 (1113)
Q Consensus       375 ~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~  454 (1113)
                      ..+..++.+.+|+....+..... +            .  ...+|.+.|+||+|||||++||+|+ |++|+|||+.+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~-l------------~--~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~   95 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVE-L------------H--KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL   95 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEE-E------------E--EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred             cccCCCCcEEEeCCCCCcceeee-e------------E--eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence            35667788889997765543210 0            0  1236999999999999999999987 89999999998876


Q ss_pred             eeeee---------------eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeee
Q 001258          455 VRQHL---------------EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  519 (1113)
Q Consensus       455 ~~~~~---------------~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~  519 (1113)
                      +....               ...+|...|++++|+|+++  +|++|+.|++|++||...++.+..+.+|...|.++++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~  173 (388)
T d1erja_          96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP  173 (388)
T ss_dssp             EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred             EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc
Confidence            54321               1235777899999999999  899999999999999999999999999999999999765


Q ss_pred             cCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEE
Q 001258          520 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  599 (1113)
Q Consensus       520 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  599 (1113)
                        ++..+++++.++.+++||..+.........+...+.                     ...+.+++++|++++.|+.|+
T Consensus       174 --~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~~~~d~~i~  230 (388)
T d1erja_         174 --SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT---------------------VAVSPGDGKYIAAGSLDRAVR  230 (388)
T ss_dssp             --TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEE---------------------EEECSTTCCEEEEEETTSCEE
T ss_pred             --ccccccccccceeeeeeecccccccccccccccccc---------------------ccccCCCCCeEEEEcCCCeEE
Confidence              457899999999999999987555444433332222                     222333556899999999999


Q ss_pred             EEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCC
Q 001258          600 FWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  674 (1113)
Q Consensus       600 iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1113)
                      +|+..++.....+...     .+...|.+++|+|++++|++++.||.|++||+.++.... ..                 
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~-----------------  292 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKS-DS-----------------  292 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------------
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccc-cc-----------------
Confidence            9999988877665321     223456666666666666666666666666654431000 00                 


Q ss_pred             cccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCce
Q 001258          675 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  754 (1113)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i  754 (1113)
                                                                                                      
T Consensus       293 --------------------------------------------------------------------------------  292 (388)
T d1erja_         293 --------------------------------------------------------------------------------  292 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEE
Q 001258          755 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  834 (1113)
Q Consensus       755 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  834 (1113)
                                                                                            .         
T Consensus       293 ----------------------------------------------------------------------~---------  293 (388)
T d1erja_         293 ----------------------------------------------------------------------K---------  293 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------------------c---------
Confidence                                                                                  0         


Q ss_pred             EEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEE----
Q 001258          835 SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF----  910 (1113)
Q Consensus       835 ~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~----  910 (1113)
                                ....+.+......|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|+++++    
T Consensus       294 ----------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~  362 (388)
T d1erja_         294 ----------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS  362 (388)
T ss_dssp             ---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSC
T ss_pred             ----------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCc
Confidence                      0001112233344677899999999 8999999999999999999999999999999999999975    


Q ss_pred             --cCCCCEEEEEeCCCcEEEEeCC
Q 001258          911 --SHALNVLVSSGADSQLCVWSSD  932 (1113)
Q Consensus       911 --s~d~~~L~s~s~D~~v~iwd~~  932 (1113)
                        +|++++||||+.||+|+||+++
T Consensus       363 ~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         363 SLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             ccCCCCCEEEEEeCCCEEEEEeee
Confidence              5789999999999999999985

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-34  Score=317.75  Aligned_cols=283  Identities=12%  Similarity=0.171  Sum_probs=241.5

Q ss_pred             cccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          749 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       749 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      .|...|.+++|+|+|++|++++ ||.|+|||+.......                  ....  ....+|...|.+++|+|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~--~~~~~h~~~I~~v~~s~  107 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQ--LDCLNRDNYIRSCKLLP  107 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEE--EECSCTTSBEEEEEECT
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEE--eeecCCCCcEEEEEEcC
Confidence            3889999999999999999876 8999999986432110                  0001  11123888999999999


Q ss_pred             CCCEEEEEe-CCeEEEEECCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258          829 NDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       829 ~~~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      ++++|++++ ||+|++||+...  +....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|
T Consensus       108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v  186 (337)
T d1gxra_         108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  186 (337)
T ss_dssp             TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred             CCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence            999999998 899999998743  45667788999999999999 89999999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccc
Q 001258          906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  984 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~  984 (1113)
                      ++++|++++..+++++.|+.|++||+.+++....     .. +.   ..|.+++|+|++.++++ +.|+.+++||+.+++
T Consensus       187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~-----~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~  257 (337)
T d1gxra_         187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQ-----HD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD  257 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE-----EE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC
T ss_pred             ccccccccccccccccccccccccccccceeecc-----cc-cc---cceEEEEEcccccccceeccccccccccccccc
Confidence            9999999999999999999999999988654321     11 11   47899999999999998 589999999999988


Q ss_pred             eeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEE
Q 001258          985 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       985 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s 1064 (1113)
                      ....   ..|...|++++|+|++++|++++.||.|++||+.+++.+..+        +|.+.|..  ++|+| ++++|++
T Consensus       258 ~~~~---~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~--------~~~~~v~~--~~~s~-d~~~l~t  323 (337)
T d1gxra_         258 KYQL---HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS--------KESSSVLS--CDISV-DDKYIVT  323 (337)
T ss_dssp             EEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE--------ECSSCEEE--EEECT-TSCEEEE
T ss_pred             cccc---cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEc--------cCCCCEEE--EEEeC-CCCEEEE
Confidence            7654   378999999999999999999999999999999999988665        46677774  88998 7899999


Q ss_pred             EeCCCcEEEEec
Q 001258         1065 GLSDGGVHVFEP 1076 (1113)
Q Consensus      1065 ~~~Dg~v~vW~~ 1076 (1113)
                      |+.||+|+|||+
T Consensus       324 ~s~D~~I~vWdl  335 (337)
T d1gxra_         324 GSGDKKATVYEV  335 (337)
T ss_dssp             EETTSCEEEEEE
T ss_pred             EeCCCeEEEEEE
Confidence            999999999997

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4e-34  Score=319.21  Aligned_cols=341  Identities=18%  Similarity=0.299  Sum_probs=252.0

Q ss_pred             cccCCCcce-EEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEE
Q 001258          415 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  493 (1113)
Q Consensus       415 ~~~~h~~~V-~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~i  493 (1113)
                      +|.||.+.| +|++|  ||++||+|+.||+|+|||+.+++.+.   ++.+|.+.|++++|+|++   +|++|+.|++|++
T Consensus         7 tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence            589998886 56555  68999999999999999999998766   789999999999999865   5999999999999


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCC-CeEEecc
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG-TRTYQGF  572 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~-~~~~~~~  572 (1113)
                      |++...+.......+............+++.++++++.|+.|++||+.+.............. .....+.. .......
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccccccceeeee
Confidence            999999888777666655555555566777899999999999999998765544322221111 11111111 1222222


Q ss_pred             ccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCcc
Q 001258          573 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  652 (1113)
Q Consensus       573 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  652 (1113)
                      ......+..+.++++.++++..|+.|++||+.+++.+.....+  ...+.++.|+|++.++++++.|+.|++|+..++ .
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~  234 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH--TDRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  234 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeecc--ccccccccccccceeeecccccceEEeeecccc-c
Confidence            2233445567778889999999999999999999988887655  346789999999999999999999999998765 2


Q ss_pred             ceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEecc
Q 001258          653 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  732 (1113)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~  732 (1113)
                      .+..+.                                                                          
T Consensus       235 ~~~~~~--------------------------------------------------------------------------  240 (355)
T d1nexb2         235 LMYTLQ--------------------------------------------------------------------------  240 (355)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            111110                                                                          


Q ss_pred             CCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccccc
Q 001258          733 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  812 (1113)
Q Consensus       733 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~  812 (1113)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (355)
T d1nexb2         241 --------------------------------------------------------------------------------  240 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEE-EecCCCcEEEEEecCCcEEEEEcc
Q 001258          813 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA-FHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       813 ~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~-~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                         +|...|.+++++  +++|++++ ||+|++||+.++...  +..|...+.++. +++ ++++|++| .||.|+|||++
T Consensus       241 ---~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~g-~d~~i~vwd~~  311 (355)
T d1nexb2         241 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV-SDNILVSG-SENQFNIYNLR  311 (355)
T ss_dssp             ---CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEE-CSSEEEEE-ETTEEEEEETT
T ss_pred             ---cccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcC-CCCEEEEE-eCCEEEEEECC
Confidence               155566666664  45777777 788888888776543  334555555554 555 77777766 48999999999


Q ss_pred             cceeee-eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          891 VDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       891 ~~~~~~-~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                      +++++. .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999885 57889999999999986 57888999999877654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.1e-34  Score=312.63  Aligned_cols=255  Identities=16%  Similarity=0.190  Sum_probs=215.1

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +++.+.+++++|+|+. |+.++ ++.|.+||+.+++...                   .+.+|.+.|++++|||||++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence            5567789999999996 66654 6789999999887665                   4789999999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCceeeEeeccCcCEEE
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS  514 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~  514 (1113)
                      +|+.||+|+|||+.+++... ...+.+|.+.|.+++|+|+++  ++++++.  ++.++||++++++....+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeecccccc-ccccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            99999999999999887543 235788999999999999999  5777664  567999999999999999999999999


Q ss_pred             EeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEec
Q 001258          515 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  594 (1113)
Q Consensus       515 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  594 (1113)
                      ++|+++.+ ..+++|+.||.|++||+++.+....+..+...|.++.++|+++                     ++++++.
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~---------------------~l~~~~~  209 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS---------------------LFASTGG  209 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS---------------------EEEEEET
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccccCcccc---------------------ccccccc
Confidence            99876543 3688999999999999998777777777777777776666665                     7899999


Q ss_pred             CCcEEEEECCCCceEEEEccC-----CCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          595 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       595 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      |+.|++||..++..+..+...     +|...|.+++|+|++++|++|+.||.|++||+.++ ++++.+.
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~  277 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIP  277 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEE
Confidence            999999999999888777532     24567999999999999999999999999999888 5555553

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=318.54  Aligned_cols=249  Identities=13%  Similarity=0.158  Sum_probs=205.0

Q ss_pred             CCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceee
Q 001258          817 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  895 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~  895 (1113)
                      |...|.+++|+|++++|++|+ ||.|++||...++.+..+.+|...|.++++++ ++..+++|+.++.+++||..+....
T Consensus       120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~~  198 (388)
T d1erja_         120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQCS  198 (388)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             CCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccc-ccccccccccceeeeeeeccccccc
Confidence            778899999999999999998 89999999999999999999999999999999 8899999999999999999998888


Q ss_pred             eeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--cccCCCCCCCCCCCceEEEccCCcEEEE-EcC
Q 001258          896 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE  972 (1113)
Q Consensus       896 ~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d  972 (1113)
                      .....+...+....+.+++++|++++.|+.|++|++.++.......  .....+|.   ..|.+++|+|++.+|++ +.|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~~~~~l~s~~~d  275 (388)
T d1erja_         199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLD  275 (388)
T ss_dssp             EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETT
T ss_pred             cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC---CCEEEEEECCCCCEEEEEECC
Confidence            7777666655555555689999999999999999999866433211  11122333   47899999999999998 589


Q ss_pred             CeEEEEeCCccceeecc----------ccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCC
Q 001258          973 TQLAIFETTKLECVKQW----------VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1042 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~----------~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~g 1042 (1113)
                      +.|++||+.++......          ....|...|.+++|+|++++|++|+.||.|++||+.+++.+..+.       +
T Consensus       276 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~-------~  348 (388)
T d1erja_         276 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ-------G  348 (388)
T ss_dssp             SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE-------C
T ss_pred             CcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe-------C
Confidence            99999999876543221          123578899999999999999999999999999999999999887       8


Q ss_pred             cccCccceEE----EEeCCCCCEEEEEeCCCcEEEEecc
Q 001258         1043 VSSNVHPLVI----AAHPQEPNEFALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1043 h~~~v~~i~~----~~~p~d~~~l~s~~~Dg~v~vW~~~ 1077 (1113)
                      |.+.|..+.+    .|+| ++++|++|+.||+|+||+++
T Consensus       349 H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         349 HRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             CCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            9998886543    2566 78899999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.1e-33  Score=301.29  Aligned_cols=250  Identities=15%  Similarity=0.159  Sum_probs=205.1

Q ss_pred             ccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecC
Q 001258          750 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  829 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~  829 (1113)
                      |...|++++|+|+|++|++++.||.|++|++.....                     .....+.+  |...|.+++|+|+
T Consensus        57 H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------------~~~~~~~~--~~~~v~~v~~s~d  113 (311)
T d1nr0a1          57 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------------ILKTTIPV--FSGPVKDISWDSE  113 (311)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------------CEEEEEEC--SSSCEEEEEECTT
T ss_pred             CCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------------cccccccc--ccCcccccccccc
Confidence            778899999999999999999999999998764221                     11111222  7889999999999


Q ss_pred             CCEEEEEeC---CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258          830 DSYVMSASG---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       830 ~~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      +++|+++++   ..++||++++++....+.+|...|++++|+| ++. +|++|+.||.|++||+.+++....+.+|...|
T Consensus       114 ~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i  192 (311)
T d1nr0a1         114 SKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV  192 (311)
T ss_dssp             SCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc-cceeeecccccccccccccccccccccccccccccc
Confidence            999999873   4599999999999999999999999999999 555 68899999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccce
Q 001258          906 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  985 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~  985 (1113)
                      ++++|+|++++|++++.|+.|++||+.+++...     ....                                 .    
T Consensus       193 ~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~-----~~~~---------------------------------~----  230 (311)
T d1nr0a1         193 HSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG-----VFED---------------------------------D----  230 (311)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEETTTCCEEE-----ECBC---------------------------------T----
T ss_pred             cccccCccccccccccccccccccccccccccc-----cccc---------------------------------c----
Confidence            999999999999999999999999998744211     0000                                 0    


Q ss_pred             eeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCccc-CccceEEEEeCCCCCEEEE
Q 001258          986 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS-NVHPLVIAAHPQEPNEFAL 1064 (1113)
Q Consensus       986 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~-~v~~i~~~~~p~d~~~l~s 1064 (1113)
                        .....+|...|++++|+|++++|++|+.||+|+|||+.+++++..+.       .|.. ....+.+.|.   ++.|++
T Consensus       231 --~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~-------~~~~~~~~~~~~~~~---~~~l~s  298 (311)
T d1nr0a1         231 --SLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP-------VGTRIEDQQLGIIWT---KQALVS  298 (311)
T ss_dssp             --TSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCSSGGGCEEEEEEC---SSCEEE
T ss_pred             --ccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE-------CCCCccceEEEEEec---CCEEEE
Confidence              01123788999999999999999999999999999999999998876       3322 2222234443   468999


Q ss_pred             EeCCCcEEEEecc
Q 001258         1065 GLSDGGVHVFEPL 1077 (1113)
Q Consensus      1065 ~~~Dg~v~vW~~~ 1077 (1113)
                      ++.||.|++||++
T Consensus       299 ~s~dG~i~~wd~d  311 (311)
T d1nr0a1         299 ISANGFINFVNPE  311 (311)
T ss_dssp             EETTCCEEEEETT
T ss_pred             EECCCEEEEEeCC
Confidence            9999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.6e-32  Score=305.97  Aligned_cols=346  Identities=14%  Similarity=0.177  Sum_probs=263.7

Q ss_pred             eeEeeccCcCE-EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEE
Q 001258          502 QYIFEGHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  580 (1113)
Q Consensus       502 ~~~~~~h~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  580 (1113)
                      ..+|+||...| +|++  ++  +++|++|+.||+|++||+.+++....+..|...|.+++|++++               
T Consensus         5 ~~tL~GH~~~vitc~~--~~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---------------   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---------------   65 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EE--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---------------
T ss_pred             cEEECCcCCCcEEEEE--EC--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---------------
Confidence            45789998876 5555  43  3699999999999999999988888999998889888888765               


Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  660 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  660 (1113)
                             +|++++.|+.|++|+....+..................+.+++.++++++.|+.|++|++.+... .......
T Consensus        66 -------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~  137 (355)
T d1nexb2          66 -------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEE  137 (355)
T ss_dssp             -------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------
T ss_pred             -------EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce-ecccccc
Confidence                   49999999999999999998887776655544556677889999999999999999999876621 1111000


Q ss_pred             cccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcc
Q 001258          661 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  740 (1113)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~  740 (1113)
                      ..                                                                              
T Consensus       138 ~~------------------------------------------------------------------------------  139 (355)
T d1nexb2         138 HD------------------------------------------------------------------------------  139 (355)
T ss_dssp             -C------------------------------------------------------------------------------
T ss_pred             ce------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             eecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCC
Q 001258          741 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  820 (1113)
Q Consensus       741 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~  820 (1113)
                                   .......+.....       .+....                                    .|...
T Consensus       140 -------------~~~~~~~~~~~~~-------~~~~~~------------------------------------~~~~~  163 (355)
T d1nexb2         140 -------------YPLVFHTPEENPY-------FVGVLR------------------------------------GHMAS  163 (355)
T ss_dssp             -------------CCEEESCTTTCTT-------EEEEEE------------------------------------CCSSC
T ss_pred             -------------eccceeccccccc-------eeeeee------------------------------------ecccc
Confidence                         0000000000000       000000                                    02222


Q ss_pred             ccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          821 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      +  ..+.+++++++++. |+.|++||+.+++.+....++...+.++.|++ ++.++++++.||.|++||+.++..+..+.
T Consensus       164 v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         164 V--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             E--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             c--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc
Confidence            2  34556788899888 89999999999999999999999999999999 88999999999999999999999999999


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  979 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d  979 (1113)
                      +|...|++++|+  +++|++++.||+|++||+.+....    ..   .+..  .......+++++.+++++.|+.|++||
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~---~~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd  309 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK----FS---YHHT--NLSAITTFYVSDNILVSGSENQFNIYN  309 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE----EE---EECT--TCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred             cccccccccccc--cceeeeeeccccccccccccccee----cc---cccC--CceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence            999999999996  579999999999999999875432    11   1111  122345678899999989999999999


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEec
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1024 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~ 1024 (1113)
                      +++++++.... .+|...|.+++|+|+ .++++++.||+++||.+
T Consensus       310 ~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         310 LRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99999886543 378999999999987 57888999999777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.1e-32  Score=298.59  Aligned_cols=286  Identities=14%  Similarity=0.190  Sum_probs=237.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      +|.||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.   .+..|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~  124 (340)
T d1tbga_          50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY  124 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEE
T ss_pred             EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeecc
Confidence            588999999999999999999999999999999999998765   6889999999999999999  79999999999999


Q ss_pred             eCCCC----ceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          495 DATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       495 d~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      +....    .....+.+|............   ..+.....|.....|.................+...           
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  190 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD---NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL-----------  190 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEET---TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE-----------
T ss_pred             cccccccccccceecccccccccccccccc---cccccccccccccccccccccccccccccceeEeee-----------
Confidence            97754    344567778877776654332   478888889999999887655444444444444444           


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                .+.+.+..+++++.|+.|++||+.+++++..+..|  ...|.+++|+|++++|++++.||.|++|++...
T Consensus       191 ----------~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h--~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~  258 (340)
T d1tbga_         191 ----------SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRAD  258 (340)
T ss_dssp             ----------EECTTSSEEEEEETTTEEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred             ----------ccccccceeEEeecCceEEEEECCCCcEEEEEeCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc
Confidence                      44455557999999999999999999999998866  457999999999999999999999999998654


Q ss_pred             ccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEe
Q 001258          651 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  730 (1113)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~  730 (1113)
                      . ....+.                                                                        
T Consensus       259 ~-~~~~~~------------------------------------------------------------------------  265 (340)
T d1tbga_         259 Q-ELMTYS------------------------------------------------------------------------  265 (340)
T ss_dssp             E-EEEEEC------------------------------------------------------------------------
T ss_pred             c-cccccc------------------------------------------------------------------------
Confidence            1 110000                                                                        


Q ss_pred             ccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCcccccc
Q 001258          731 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  810 (1113)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~  810 (1113)
                                                                                                      
T Consensus       266 --------------------------------------------------------------------------------  265 (340)
T d1tbga_         266 --------------------------------------------------------------------------------  265 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEE
Q 001258          811 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  888 (1113)
Q Consensus       811 ~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd  888 (1113)
                         ...+...|.+++|+|++++|++|+ ||.|++||+.+++++..+.+|...|++++|+| ++++|++|+.||.|+|||
T Consensus       266 ---~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~-d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         266 ---HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             ---CTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred             ---cccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeC-CCCEEEEEccCCEEEEeC
Confidence               001455678889999999999998 89999999999999999999999999999999 899999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.3e-31  Score=296.83  Aligned_cols=293  Identities=19%  Similarity=0.306  Sum_probs=247.5

Q ss_pred             ceeEec-cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          350 TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       350 ~~~~~~-~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      +..++| +|.+.|++++|+|++++ ||+|+.||+|+|||+.+++.+.                   .+.+|...|.+++|
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~  105 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAY  105 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCE-EEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEe
Confidence            344555 49999999999999995 9999999999999999998876                   36789999999999


Q ss_pred             cCCCCeEEEEeCCCeEEEEEccCCcee-eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec
Q 001258          429 SPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  507 (1113)
Q Consensus       429 spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  507 (1113)
                      +|+++++++|+.|+.+++|+....... .....+.+|...........+.   .+.....|.....|+............
T Consensus       106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (340)
T d1tbga_         106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG  182 (340)
T ss_dssp             CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred             eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence            999999999999999999998765432 2333577888877777776655   478888899999999888888888888


Q ss_pred             cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          508 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       508 h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      +...+....+.+  .+.++++++.|+.|++||+++......+..|...|.+++|+|++.                     
T Consensus       183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~---------------------  239 (340)
T d1tbga_         183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN---------------------  239 (340)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---------------------
T ss_pred             cceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCC---------------------
Confidence            888888887654  447999999999999999998887777777777777777776665                     


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                      +|++++.|+.|++|++.....+..+....+...|.+++|+|++++|++|+.||.|++||+.++ +.+..+.         
T Consensus       240 ~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~---------  309 (340)
T d1tbga_         240 AFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA---------  309 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC---------
T ss_pred             EEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc---------
Confidence            799999999999999999998888876666678999999999999999999999999998877 3333332         


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                                                                                                      
T Consensus       310 --------------------------------------------------------------------------------  309 (340)
T d1tbga_         310 --------------------------------------------------------------------------------  309 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEE
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWK  779 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~  779 (1113)
                       +|...|.+++|+|++++|++++.||.|+|||
T Consensus       310 -~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         310 -GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence             2667899999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-32  Score=306.47  Aligned_cols=306  Identities=15%  Similarity=0.193  Sum_probs=228.0

Q ss_pred             CcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001258          420 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  499 (1113)
Q Consensus       420 ~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~  499 (1113)
                      .++|+|++|||||++||+|+.|+.|+|||+.+++.. ....+.+|.+.|.+|+|+|+++  +|++|+.|++|+|||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence            358999999999999999999999999999887633 4457899999999999999999  7999999999999999877


Q ss_pred             cee--eEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCce
Q 001258          500 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  577 (1113)
Q Consensus       500 ~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  577 (1113)
                      ...  ..+.+|...|.+++|++  ++++|++++.|+.|++|++........                             
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~-----------------------------  132 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWV-----------------------------  132 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEE-----------------------------
T ss_pred             cccccccccccccccccccccc--ccccceeecccCcceeeeeeccccccc-----------------------------
Confidence            644  44567888899988765  447888888888888887654221110                             


Q ss_pred             eEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          578 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       578 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                                                    .....  ..+...|.+++|+|++++|++|+.|+.+++|+..... .....
T Consensus       133 ------------------------------~~~~~--~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~-~~~~~  179 (371)
T d1k8kc_         133 ------------------------------CKHIK--KPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE-VEERP  179 (371)
T ss_dssp             ------------------------------EEEEC--TTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT-TSCCC
T ss_pred             ------------------------------ccccc--cccccccccccccccccceeccccCcEEEEEeeccCc-ccccc
Confidence                                          00111  1223468899999999999999999999999976541 11000


Q ss_pred             ccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCC
Q 001258          658 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      ..                                                                   ..|+..     
T Consensus       180 ~~-------------------------------------------------------------------~~~~~~-----  187 (371)
T d1k8kc_         180 AP-------------------------------------------------------------------TPWGSK-----  187 (371)
T ss_dssp             CC-------------------------------------------------------------------BTTBSC-----
T ss_pred             cc-------------------------------------------------------------------cccccc-----
Confidence            00                                                                   000000     


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                                            .+.+..+.                                             ....|
T Consensus       188 ----------------------~~~~~~~~---------------------------------------------~~~~~  200 (371)
T d1k8kc_         188 ----------------------MPFGELMF---------------------------------------------ESSSS  200 (371)
T ss_dssp             ----------------------CCTTCEEE---------------------------------------------ECCCC
T ss_pred             ----------------------ccceeeee---------------------------------------------eccCc
Confidence                                  00001000                                             01127


Q ss_pred             CCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc--cee
Q 001258          818 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV--DEV  894 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~--~~~  894 (1113)
                      ...|.+++|+|++++|++++ |+.|++||+.+++.+..+..|..+|.+++|+| ++++|++|. |+.+++|....  +..
T Consensus       201 ~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~  278 (371)
T d1k8kc_         201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKL  278 (371)
T ss_dssp             SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEE
T ss_pred             cCcEEEEEeecccccccccccCCcceEEeeecccceeeeecccccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceE
Confidence            78899999999999999998 89999999999999999999999999999999 888888665 77777765432  111


Q ss_pred             ee---------------------------------------eecccccCeEEEEEcCCC----CEEEEEeCCCcEEEEeC
Q 001258          895 KS---------------------------------------KLKGHSKRITGLAFSHAL----NVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       895 ~~---------------------------------------~l~~h~~~V~~l~~s~d~----~~L~s~s~D~~v~iwd~  931 (1113)
                      ..                                       ....|.+.|+++++.+++    ..++|+|.||+|+|||+
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~  358 (371)
T d1k8kc_         279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV  358 (371)
T ss_dssp             EECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred             EEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence            00                                       001388999999998754    46899999999999999


Q ss_pred             CC
Q 001258          932 DG  933 (1113)
Q Consensus       932 ~~  933 (1113)
                      ++
T Consensus       359 ~~  360 (371)
T d1k8kc_         359 RS  360 (371)
T ss_dssp             HH
T ss_pred             Cc
Confidence            76

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-31  Score=297.26  Aligned_cols=317  Identities=19%  Similarity=0.291  Sum_probs=246.2

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      ++.||.+.|.+ +++++|++||||+.||+|+|||+.+++.++   ++.+|.+.|.+++|+++    +|++|+.|+++++|
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence            68999999865 466789999999999999999999998766   78899999999999874    69999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      +............+...+......  .  ..+..+..|+.+.+|+..+......+........                 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~-----------------  141 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHLH--E--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR-----------------  141 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE--T--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEE-----------------
T ss_pred             ccccccceecccccceeEeeeecc--c--ccccccccceeEEEeecccccceeeeecccccce-----------------
Confidence            998888777777677777665532  2  4688899999999999988665554433322211                 


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                            ...+....+++++.|+.|++||....+.+..+..+.    .....+.+++.++++++.||.|++||+..+ +.+
T Consensus       142 ------~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~  210 (342)
T d2ovrb2         142 ------CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCI  210 (342)
T ss_dssp             ------EEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             ------eeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eee
Confidence                  122233458899999999999999988888887553    345666678899999999999999998655 111


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      ..+.                                                                            
T Consensus       211 ~~~~----------------------------------------------------------------------------  214 (342)
T d2ovrb2         211 HTLT----------------------------------------------------------------------------  214 (342)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEec----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCC
Q 001258          735 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  814 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~  814 (1113)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          815 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       815 ~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                       .|...+.++++  ++++|++++ |+.|++||+...+....+..   |...+.++.++   ++++++|+.||.|+|||+.
T Consensus       215 -~~~~~v~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         215 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             -ccccceeEEec--CCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence             03344444444  345777777 78888888887777666654   34455666654   4699999999999999999


Q ss_pred             cceeeeeec-----ccccCeEEEEEcCCCCEEEEEeCCCc----EEEEeCCC
Q 001258          891 VDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  933 (1113)
Q Consensus       891 ~~~~~~~l~-----~h~~~V~~l~~s~d~~~L~s~s~D~~----v~iwd~~~  933 (1113)
                      ++++++.+.     +|.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999888773     58889999999999999999999986    99999875

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.2e-32  Score=307.02  Aligned_cols=263  Identities=12%  Similarity=0.077  Sum_probs=205.1

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEE
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      .++|+|++|||||++ ||+|+.||.|+|||..+++.....                 .+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~~-la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCCE-EEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            478999999999994 899999999999999877643321                 47899999999999999999999


Q ss_pred             EeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee----eEeeccCcCEE
Q 001258          438 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  513 (1113)
Q Consensus       438 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~----~~~~~h~~~v~  513 (1113)
                      |+.|++|+|||+.++... ....+.+|...|.+++|+|+++  .|++++.|++|++|++......    .....|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999987643 3345678999999999999999  7999999999999998876543    33456889999


Q ss_pred             EEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEec-cccCceeEEEecCCCCEEEEE
Q 001258          514 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA  592 (1113)
Q Consensus       514 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  592 (1113)
                      +++|+|  ++.+|++|+.|+.|++|+................    .-.+.+...... .+...+..++|+|++++|+++
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCcccccccccccc----ccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence            999865  5589999999999999998764332211100000    001112222221 233467778888888899999


Q ss_pred             ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          593 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       593 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      +.|+.|++||+.+++.+..+..+  ..+|.+++|+|++++|++| .|+.+++|.....
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~--~~~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             ccCCcceEEeeecccceeeeecc--cccceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            99999999999999999988866  4479999999999888765 4777777765544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-31  Score=290.49  Aligned_cols=324  Identities=19%  Similarity=0.264  Sum_probs=245.0

Q ss_pred             eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1113)
Q Consensus       458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1113)
                      ...|+||.+.|.+ +++++|+  +|+|||.|++|+|||+.++++++++.+|.+.|.+++|++    .+|++++.|+.+++
T Consensus         9 ~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~   81 (342)
T d2ovrb2           9 PKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKV   81 (342)
T ss_dssp             CEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEE
T ss_pred             CEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccccc
Confidence            3478999999865 4666788  799999999999999999999999999999999999863    38999999999999


Q ss_pred             EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCC
Q 001258          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  617 (1113)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  617 (1113)
                      |+................+.....                       ....+..+..|+.+.+|+..+++....+.... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~-  137 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHL-----------------------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-  137 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEESSSCCEEEEEECCS-
T ss_pred             cccccccceecccccceeEeeeec-----------------------ccccccccccceeEEEeecccccceeeeeccc-
Confidence            998865544443333333332222                       22347788899999999999888777765432 


Q ss_pred             CCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccccc
Q 001258          618 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  697 (1113)
Q Consensus       618 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1113)
                         .....+.+....+++++.|+.+++|+.... ..+..+.+                                      
T Consensus       138 ---~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~--------------------------------------  175 (342)
T d2ovrb2         138 ---AAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQG--------------------------------------  175 (342)
T ss_dssp             ---SCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECC--------------------------------------
T ss_pred             ---ccceeeccccceeeeecCCCeEEEeecccc-eeeEEEcC--------------------------------------
Confidence               234445556677788888888888876543 11111100                                      


Q ss_pred             ccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEE
Q 001258          698 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  777 (1113)
Q Consensus       698 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~v  777 (1113)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (342)
T d2ovrb2         176 --------------------------------------------------------------------------------  175 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeec
Q 001258          778 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  856 (1113)
Q Consensus       778 w~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~  856 (1113)
                                                             |.  .....+++++.++++++ ||+|++||+..++.+..+.
T Consensus       176 ---------------------------------------~~--~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~  214 (342)
T d2ovrb2         176 ---------------------------------------HT--NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT  214 (342)
T ss_dssp             ---------------------------------------CS--SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             ---------------------------------------cc--cccccccCCCCEEEEEeCCCeEEEeecccceeeeEec
Confidence                                                   22  22344556788899888 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc---cccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001258          857 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  933 (1113)
Q Consensus       857 ~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~  933 (1113)
                      +|...+.++++++   ++|++|+.||.|++||+...+....+.+   |...+.++.++  ++++++++.||+|++||+++
T Consensus       215 ~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t  289 (342)
T d2ovrb2         215 GHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT  289 (342)
T ss_dssp             CCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred             ccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence            9999999888865   5999999999999999998887777654   55667777664  57999999999999999988


Q ss_pred             CccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258          934 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       934 ~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                      ++....                  +                            ......+|...|++++|+|++.+|++|
T Consensus       290 g~~i~~------------------~----------------------------~~~~~~~~~~~v~~v~~s~~~~~la~g  323 (342)
T d2ovrb2         290 GEFIRN------------------L----------------------------VTLESGGSGGVVWRIRASNTKLVCAVG  323 (342)
T ss_dssp             CCEEEE------------------E----------------------------EECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             CCEEEE------------------E----------------------------ecccCCCCCCCEEEEEECCCCCEEEEE
Confidence            543110                  0                            001112567889999999999999999


Q ss_pred             eCCCc----EEEEecCC
Q 001258         1014 FLDAT----VCVFSAAN 1026 (1113)
Q Consensus      1014 ~~Dg~----v~vwd~~~ 1026 (1113)
                      +.||+    |++||++.
T Consensus       324 ~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         324 SRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CSSSSSCCEEEEEECCC
T ss_pred             eCCCCCeeEEEEEeCCC
Confidence            99986    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=9.7e-31  Score=284.19  Aligned_cols=294  Identities=15%  Similarity=0.153  Sum_probs=226.6

Q ss_pred             CceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhh
Q 001258          606 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA  685 (1113)
Q Consensus       606 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1113)
                      |+..+.+.+|  ...|++++|+|++++|++|+.||+|++||+.++ +..+.+.                           
T Consensus         2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~---------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP---------------------------   51 (299)
T ss_dssp             TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred             CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence            4566677666  558999999999999999999999999999877 3222221                           


Q ss_pred             hcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCce
Q 001258          686 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  765 (1113)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  765 (1113)
                                                                                    ..|...|.+++|+|+++ 
T Consensus        52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~-   68 (299)
T d1nr0a2          52 --------------------------------------------------------------DVHATMITGIKTTSKGD-   68 (299)
T ss_dssp             --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred             --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence                                                                          12677899999999997 


Q ss_pred             EEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEeCCeEEEEE
Q 001258          766 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  845 (1113)
Q Consensus       766 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~sdg~i~vwd  845 (1113)
                      +++++.|+.+++|+.........                 ..     ....+...+.++++++++++++++.++.+++|+
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~  126 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDSS-----------------KA-----VANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  126 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCTT-----------------SC-----CEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eecccceeeEEEeccCCcccccc-----------------cc-----ccccccccccccccccccccccccccccccccc
Confidence            66778899999998653221100                 00     001156778899999999999999999999999


Q ss_pred             CCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee-eecccccCeEEEEEcCCCCEEEEEeCCC
Q 001258          846 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS  924 (1113)
Q Consensus       846 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~L~s~s~D~  924 (1113)
                      ...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus       127 ~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         127 HGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             TTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            543  22222  334578999999 89999999999999999998876553 4457999999999999999999999999


Q ss_pred             cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCC-CCCeeEEE
Q 001258          925 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRES-SAPITHAT 1002 (1113)
Q Consensus       925 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h-~~~v~~l~ 1002 (1113)
                      .|++||+.++....  ......+|.   ..|.+++|+|++.+|++ +.|+.|++||+.++..........| ...+.++.
T Consensus       202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence            99999998754322  222333343   47899999999999999 5899999999998876554443344 45566665


Q ss_pred             ECCCCCEEEEEeCCCcEEEEecC
Q 001258         1003 FSCDSQLVYACFLDATVCVFSAA 1025 (1113)
Q Consensus      1003 ~s~dg~~l~s~~~Dg~v~vwd~~ 1025 (1113)
                      | +++++|++++.||+|++||+.
T Consensus       277 ~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         277 W-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             E-EETTEEEEEETTSCEEEEECC
T ss_pred             E-CCCCEEEEEeCCCEEEEEecc
Confidence            4 667899999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.98  E-value=1.4e-30  Score=282.82  Aligned_cols=285  Identities=13%  Similarity=0.077  Sum_probs=217.9

Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                      .+|...|++++|+|++++|++++.||.|++||+..                      +........  .|...|.+++|+
T Consensus         9 ~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~----------------------~~~~~~~~~--~h~~~v~~v~~~   64 (299)
T d1nr0a2           9 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVFPD--VHATMITGIKTT   64 (299)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECSSC--SCSSCEEEEEEC
T ss_pred             CCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCC----------------------CcEEEEEcC--CCCCcEEEEEee
Confidence            56999999999999999999999999999998753                      332222222  388899999999


Q ss_pred             cCCCEEEEEeCCeEEEEECCCCce---eeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258          828 KNDSYVMSASGGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       828 ~~~~~l~~~sdg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                      |++++++++.|+++++|+......   ......+...+.+++|++ +++++++++ ++.+++|+...  .....  ....
T Consensus        65 ~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~g~~~~~~~-~~~i~~~~~~~--~~~~~--~~~~  138 (299)
T d1nr0a2          65 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAAC-YKHIAIYSHGK--LTEVP--ISYN  138 (299)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEEE-SSEEEEEETTE--EEEEE--CSSC
T ss_pred             ccceeecccceeeEEEeccCCcccccccccccccccccccccccc-ccccccccc-ccccccccccc--ccccc--cccc
Confidence            999988888899999999865332   122334667789999999 888777665 67899998543  22333  3345


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCCeEEEEeCCcc
Q 001258          905 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKL  983 (1113)
Q Consensus       905 V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~  983 (1113)
                      +++++|+|++++|++++.|+.|++||+.+++.......    .|.   ..|.+++|+|++.+|++ +.|+.|++||+.++
T Consensus       139 ~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~----~~~---~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~  211 (299)
T d1nr0a2         139 SSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI----VHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVANN  211 (299)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEE----ECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGGT
T ss_pred             cccccccccccccccccccccccccccccccccccccc----ccc---cccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999999987553321111    122   37899999999999998 58899999999887


Q ss_pred             ceeeccc-cCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEE
Q 001258          984 ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEF 1062 (1113)
Q Consensus       984 ~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l 1062 (1113)
                      ....... ..+|...|++++|+|++++|++|+.||.|++||+.++.....+.    ...++...+.   ..+++ ++.+|
T Consensus       212 ~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~----~~~~~~~~v~---~~~~~-~~~~l  283 (299)
T d1nr0a2         212 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII----KGAHAMSSVN---SVIWL-NETTI  283 (299)
T ss_dssp             TEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE----TTSSTTSCEE---EEEEE-ETTEE
T ss_pred             ccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE----ecCCCCCcEE---EEEEC-CCCEE
Confidence            6654432 34789999999999999999999999999999998876543322    1112223333   44445 46799


Q ss_pred             EEEeCCCcEEEEecc
Q 001258         1063 ALGLSDGGVHVFEPL 1077 (1113)
Q Consensus      1063 ~s~~~Dg~v~vW~~~ 1077 (1113)
                      ++++.||+|++||++
T Consensus       284 ~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         284 VSAGQDSNIKFWNVP  298 (299)
T ss_dssp             EEEETTSCEEEEECC
T ss_pred             EEEeCCCEEEEEecc
Confidence            999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8e-30  Score=279.93  Aligned_cols=285  Identities=14%  Similarity=0.146  Sum_probs=217.5

Q ss_pred             CceEEEEEeCCCceEEEeecCC-eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC-CCCccEEEEec-
Q 001258          752 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-EEAVPCFALSK-  828 (1113)
Q Consensus       752 ~~i~~~~~s~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~-~~~v~~l~~s~-  828 (1113)
                      ..+.+++|+|+++.++.++.+. .++.|+......                    ... ..+.  +| ...|++++|+| 
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~-~~~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPV-VQFT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSE-EEEC--TTTTSCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cce-EEEe--CCCCCCEEEEEEeeC
Confidence            3567889999999988876553 344444321110                    000 0111  24 56799999997 


Q ss_pred             -CCCEEEEEe-CCeEEEEECCCCceee--------eecCCCCCeeEEEEecCCCcEEEEEec--CCcEEEEEcccceeee
Q 001258          829 -NDSYVMSAS-GGKISLFNMMTFKTMA--------TFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       829 -~~~~l~~~s-dg~i~vwd~~~~~~~~--------~~~~~~~~i~~l~~s~~d~~~la~g~~--dg~v~iwd~~~~~~~~  896 (1113)
                       ++++|++|+ ||+|+|||+..++...        .+..|...|.+++|++ ++++|++++.  ++.+++|+..+++.+.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999998 9999999997654432        3456788999999999 8888877654  6789999999999999


Q ss_pred             eecccccCeEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC-CcEEEE-EcCC
Q 001258          897 KLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHET  973 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~-L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd-g~~l~~-~~d~  973 (1113)
                      .+.+|...|++++|+|++.+ +++++.|+.|++||+.+.+...  .......+.   ..|.+++|+|| +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceecccccccc
Confidence            99999999999999999865 7789999999999998754322  122223332   47899999997 577777 5899


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEEC---CCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccC--cc
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSN--VH 1048 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s---~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~--v~ 1048 (1113)
                      .|++||+.+++.+..+.  +|..++.++.|+   +||++|++++.|+.|+|||+.+++.+..+.       .|...  +.
T Consensus       229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~-------~~~~~~~~~  299 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT-------LDKQQLGNQ  299 (325)
T ss_dssp             CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE-------CCTTCGGGC
T ss_pred             ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE-------ecCCcccCe
Confidence            99999999999988876  567777666665   789999999999999999999999988776       33333  33


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEec
Q 001258         1049 PLVIAAHPQEPNEFALGLSDGGVHVFEP 1076 (1113)
Q Consensus      1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~ 1076 (1113)
                      .+.+.+.+  +.+|++++.||+|++||+
T Consensus       300 ~~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         300 QVGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEEEECC--CCEEEEEECCCEEEEEEC
Confidence            43444443  458999999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.2e-28  Score=270.56  Aligned_cols=258  Identities=15%  Similarity=0.208  Sum_probs=193.6

Q ss_pred             CCCcEEEEEcCCCCeEEEEEecC-CcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCC-CcceEEEEEcC--CCC
Q 001258          358 GSSPMSMDFHPVQQTLLLVGTNV-GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGS  433 (1113)
Q Consensus       358 ~~~V~~~~~spdg~~ll~~gs~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~  433 (1113)
                      ...+++++|+|+|+. |+.++.+ ..|+.|+....+...                 ...+.+| ...|++++|+|  +|+
T Consensus        17 ~~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~   78 (325)
T d1pgua1          17 RNFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQ   78 (325)
T ss_dssp             TTCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCC
T ss_pred             CCCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCC
Confidence            345789999999996 6666543 335556544332211                 0135566 56899999998  678


Q ss_pred             eEEEEeCCCeEEEEEccCCceeee-----eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeecc
Q 001258          434 LFGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  508 (1113)
Q Consensus       434 ~las~~~d~~i~iwd~~~~~~~~~-----~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h  508 (1113)
                      +||+|+.||+|+|||+..++....     ...+..|.++|.+++|+++++.+..++++.++.+++|+..+++++..+.+|
T Consensus        79 ~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h  158 (325)
T d1pgua1          79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH  158 (325)
T ss_dssp             EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC
T ss_pred             EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeec
Confidence            999999999999999987654321     123567899999999999999533344456889999999999999999999


Q ss_pred             CcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee---CCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          509 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       509 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      ...|.+++|++..+ .++++++.|+.+++||....+......   .+...|.+++|+|++                    
T Consensus       159 ~~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~--------------------  217 (325)
T d1pgua1         159 SQRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS--------------------  217 (325)
T ss_dssp             SSCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT--------------------
T ss_pred             cccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeecccc--------------------
Confidence            99999999877543 467889999999999987655444332   233445555555543                    


Q ss_pred             CCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEEC---CCCCEEEEEECCCcEEEEEcCCCccceecc
Q 001258          586 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       586 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                      +.++++++.|+.|++||+++++.+..+..|.  ..+.++.|+   |++++|++++.|+.|+|||+.++ +.++.+
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~--~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~  289 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQ--EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKW  289 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTT--BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEE
T ss_pred             ceeccccccccceeeeeeccccccccccccc--cccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEE
Confidence            3468899999999999999999999987664  356666665   78999999999999999999887 555444

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.8e-27  Score=256.31  Aligned_cols=269  Identities=18%  Similarity=0.266  Sum_probs=207.2

Q ss_pred             eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEE
Q 001258          457 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  536 (1113)
Q Consensus       457 ~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~  536 (1113)
                      .+.++.||.++|++++|+|      |+||+.||+|++||+.++     ..+|...|.++++.+.   ..+++++.|++++
T Consensus         5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~---~~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA---QEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST---TCCEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC---CeEEEEeeccccc
Confidence            3448999999999999975      799999999999998764     3579999999997543   4689999999999


Q ss_pred             EEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC
Q 001258          537 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  616 (1113)
Q Consensus       537 iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  616 (1113)
                      +|++....       ....+..+++.+++.                      ++..+.++.+.+|+..+++.+..+....
T Consensus        71 ~w~~~~~~-------~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (287)
T d1pgua2          71 VNGITKHE-------FGSQPKVASANNDGF----------------------TAVLTNDDDLLILQSFTGDIIKSVRLNS  121 (287)
T ss_dssp             ETTEEEEE-------CSSCEEEEEECSSSE----------------------EEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccccccc-------cccceeeeeeccCCc----------------------eEEEeecccceeeeccceeeeeeccccc
Confidence            99875421       122344455555443                      4555667789999999999888876442


Q ss_pred             CCCCcCeEEECCCCCEEEEEECCC-cEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhccccccccc
Q 001258          617 GLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  695 (1113)
Q Consensus       617 ~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1113)
                           ...++++++..+++++.++ .+++|++.+.. ....+                                      
T Consensus       122 -----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~--------------------------------------  157 (287)
T d1pgua2         122 -----PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDL--------------------------------------  157 (287)
T ss_dssp             -----CEEEEEECSSEEEEEETTTSCEEEEETTEEE-EEEEC--------------------------------------
T ss_pred             -----eeeeeeccCcceeeeccccceeeeeeccccc-eeeee--------------------------------------
Confidence                 3467778888888887765 68888864331 00000                                      


Q ss_pred             ccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeE
Q 001258          696 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  775 (1113)
Q Consensus       696 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i  775 (1113)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (287)
T d1pgua2         158 --------------------------------------------------------------------------------  157 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceee-
Q 001258          776 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-  853 (1113)
Q Consensus       776 ~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~-  853 (1113)
                                                          .  ..+...+++++|+|++++|++|+ ||.|++||+.+++... 
T Consensus       158 ------------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         158 ------------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             ------------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ------------------------------------e--eccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence                                                0  01455678888888888888887 8889999988877654 


Q ss_pred             eecCCCCCeeEEEEecC---------CCcEEEEEecCCcEEEEEccc-ceeeeeecccccCeEEEEEcCCCCEEEEEeCC
Q 001258          854 TFMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  923 (1113)
Q Consensus       854 ~~~~~~~~i~~l~~s~~---------d~~~la~g~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D  923 (1113)
                      .+.+|...|.+++|+|.         ++.+|++|+.|+.|+|||+.+ .+.+..+.+|.+.|++++|+|++ .|++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            46788999999999872         356899999999999999976 56778888999999999999986 68999999


Q ss_pred             CcEEEEeC
Q 001258          924 SQLCVWSS  931 (1113)
Q Consensus       924 ~~v~iwd~  931 (1113)
                      ++|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.1e-27  Score=257.54  Aligned_cols=329  Identities=12%  Similarity=0.097  Sum_probs=225.1

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      ++.+|.+.|++|+|||++++||+|+.||+|+|||+.++..........+|.++|.+++|+|++.. +|++|+.|++|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            57899999999999999999999999999999999887655444455579999999999998665 79999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ++..+........+...+....+.. .+...+++++.|+.+++||++........                         
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~-------------------------  138 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIA-------------------------  138 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEE-------------------------
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceee-------------------------
Confidence            9998887776665554443333222 23357888888888888877642211100                         


Q ss_pred             CceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccce
Q 001258          575 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  654 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  654 (1113)
                                                        ......+..........+.+++..+++++.|+.|++|++.......
T Consensus       139 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  184 (342)
T d1yfqa_         139 ----------------------------------VKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDN  184 (342)
T ss_dssp             ----------------------------------EEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCC
T ss_pred             ----------------------------------ecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccc
Confidence                                              0001111111223456777788999999999999999987662111


Q ss_pred             eccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCC
Q 001258          655 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  734 (1113)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~  734 (1113)
                      .....                                                                           
T Consensus       185 ~~~~~---------------------------------------------------------------------------  189 (342)
T d1yfqa_         185 GTIEE---------------------------------------------------------------------------  189 (342)
T ss_dssp             CEEEE---------------------------------------------------------------------------
T ss_pred             eeeee---------------------------------------------------------------------------
Confidence            10000                                                                           


Q ss_pred             CCCCcceecccCcccccCceEEE-EEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          735 SEPNQCRSLRLPENLRATKISRL-IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       735 ~~~~~~~~~~~~~~~~~~~i~~~-~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                   ......+.+. .+..++..+++++.||.+.+|++...............  .        .......
T Consensus       190 -------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~--~--------~~~~~~~  246 (342)
T d1yfqa_         190 -------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF--R--------CHRLNLK  246 (342)
T ss_dssp             -------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE--E--------CCCCCTT
T ss_pred             -------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecccccee--e--------eeeeccC
Confidence                         0011223333 34456777888999999999987654322211110000  0        0000111


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  892 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~  892 (1113)
                      ...|...+.+++|+|++++|++|+ ||+|++||+.+++.+..+..+ ..+..++|+| ++++|++|+.|+.+++|...  
T Consensus       247 ~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~--  322 (342)
T d1yfqa_         247 DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI--  322 (342)
T ss_dssp             CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS--
T ss_pred             CCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee--
Confidence            223777899999999999999998 899999999999998888643 3466788899 88999999999988887543  


Q ss_pred             eeeeeecccccCeEEE
Q 001258          893 EVKSKLKGHSKRITGL  908 (1113)
Q Consensus       893 ~~~~~l~~h~~~V~~l  908 (1113)
                        ...+..|...|..+
T Consensus       323 --~~~~~~~~~~i~~~  336 (342)
T d1yfqa_         323 --DQTIELNASSIYII  336 (342)
T ss_dssp             --CTTSCCCCCEEEEE
T ss_pred             --CCCccCCCCeEEEE
Confidence              23455566666543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.4e-26  Score=261.61  Aligned_cols=293  Identities=16%  Similarity=0.226  Sum_probs=192.7

Q ss_pred             eeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce------eeEeeccCcCEEEEee---e--ecCCceEEEE
Q 001258          460 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK------QYIFEGHEAPVYSVCP---H--HKENIQFIFS  528 (1113)
Q Consensus       460 ~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~------~~~~~~h~~~v~~~~~---~--~~~~~~~l~s  528 (1113)
                      ..++|.+.|.++++++  +  +++|+|.|++|+|||..+...      ......|...+..+..   .  ...++.++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             ESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            5679999999999875  4  699999999999999876532      1222334444332221   1  1123357889


Q ss_pred             EecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC-----CCEEEEEecCCcEEEEEC
Q 001258          529 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-----KNRFLAAGDDFSIKFWDM  603 (1113)
Q Consensus       529 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~  603 (1113)
                      ++.||.|++|++...........+.       ...    .........+..+++.++     +.++++++.||.+++|++
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~  153 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEK-------LDL----LDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  153 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEE-------ECC----SCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             EeCCCcEEEEEccCCCceeeeeccc-------cce----eeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence            9999999999987544332211100       000    000011122333344333     357889999999999997


Q ss_pred             CCCc---------------eEEEE-ccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258          604 DSVQ---------------LLTSI-DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       604 ~~~~---------------~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                      ....               ..... ........+.+++|+|++ +|++|+.||+|++||+.++ +.+..+.....     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~-----  226 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHS-----  226 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC------
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-ccccccccccc-----
Confidence            4321               11111 112223457899999998 8899999999999999877 22222210000     


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCc
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  747 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~  747 (1113)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (393)
T d1sq9a_         227 --------------------------------------------------------------------------------  226 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                                                                                      +.  +|...|.+++|+
T Consensus       227 ----------------------------------------------------------------l~--~h~~~V~~l~~s  240 (393)
T d1sq9a_         227 ----------------------------------------------------------------MI--NNSNSIRSVKFS  240 (393)
T ss_dssp             --------------------------------------------------------------------CCCCCEEEEEEC
T ss_pred             ----------------------------------------------------------------cc--cccceEEEcccc
Confidence                                                                            00  145555556666


Q ss_pred             cCCCEEEEEe-CC---eEEEEECCCCceeeee-------------cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcc
Q 001258          828 KNDSYVMSAS-GG---KISLFNMMTFKTMATF-------------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  890 (1113)
Q Consensus       828 ~~~~~l~~~s-dg---~i~vwd~~~~~~~~~~-------------~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~  890 (1113)
                      |||++|++|+ |+   .|++||+++++++..+             .+|...|++++|+| ++++|++|+.|++|+|||+.
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence            6666666555 33   3566666655555444             47999999999999 89999999999999999999


Q ss_pred             cceeeeeecccccCeE----EEEEcCCCCEEEEEe
Q 001258          891 VDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG  921 (1113)
Q Consensus       891 ~~~~~~~l~~h~~~V~----~l~~s~d~~~L~s~s  921 (1113)
                      +++++.++.+|.+.|.    .++|++++..+++++
T Consensus       320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999998886    588999999887654

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.6e-27  Score=263.81  Aligned_cols=348  Identities=10%  Similarity=0.086  Sum_probs=230.0

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceee---eeeeeecccCCeeEEEE------cCCCCeeEEEEe
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAF------SHPNKQLCVITC  485 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~---~~~~l~~h~~~V~~v~~------s~~~~~~~l~s~  485 (1113)
                      ...+|.+.|.++++++  ++|++++.|++|+|||..+.+...   .......|...+..+.+      +.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            5789999999999864  799999999999999987654211   11123345544433322      22222 267899


Q ss_pred             cCCCcEEEEeCCCCceeeEe----------eccCcCEEEEeeeecCC---ceEEEEEecCCcEEEEEcCCCCCee-eeeC
Q 001258          486 GDDKTIKVWDATNGAKQYIF----------EGHEAPVYSVCPHHKEN---IQFIFSTALDGKIKAWLYDNLGSRV-DYEA  551 (1113)
Q Consensus       486 s~d~~i~iwd~~~~~~~~~~----------~~h~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~  551 (1113)
                      +.||.|++|++..+.....+          ..+...+..++|.+..+   +.++++++.||.+++|++....... ....
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            99999999998755433222          12455677777765532   4789999999999999986433221 1111


Q ss_pred             CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccC----CCCCCcCeEEEC
Q 001258          552 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN  627 (1113)
Q Consensus       552 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s  627 (1113)
                      .......+.....    ........+.+++|+|++ +|++|+.|+.|++||+.+++.+..+...    +|...|.+++|+
T Consensus       166 ~~~~~~~~~~~~~----~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTVE----SPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEEC----CSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceeccccee----cccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence            1111111111000    001122345667788776 7899999999999999999988776532    356689999999


Q ss_pred             CCCCEEEEEECCCc---EEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCC
Q 001258          628 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM  704 (1113)
Q Consensus       628 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1113)
                      |+|++|++|+.|++   |++||+.++ ..+..+......                                         
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~-----------------------------------------  278 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS-----------------------------------------  278 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccc-eeeeeecccccc-----------------------------------------
Confidence            99999999999875   899998877 333322110000                                         


Q ss_pred             CCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccc
Q 001258          705 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  784 (1113)
Q Consensus       705 ~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~  784 (1113)
                                                                                .                     
T Consensus       279 ----------------------------------------------------------~---------------------  279 (393)
T d1sq9a_         279 ----------------------------------------------------------S---------------------  279 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             cCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCee
Q 001258          785 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  863 (1113)
Q Consensus       785 ~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~  863 (1113)
                                            .....+.  +|...|++++|+|++++|++++ |++|+|||+++++++.++.+|...|.
T Consensus       280 ----------------------~~~~~~~--gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         280 ----------------------QASLGEF--AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             --------------------------CCB--SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ----------------------cceeeee--cccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence                                  0000011  2889999999999999999999 99999999999999999999988775


Q ss_pred             ----EEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001258          864 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  931 (1113)
Q Consensus       864 ----~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~  931 (1113)
                          .++|++ ++..+++++   ...++.+..+...     ..       .......+++++.|+.|++|.-
T Consensus       336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGWRS-----GM-------GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTTSB-----ST-------TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCccEEEECC-CCCEEEEcc---cceEEECccCcee-----cc-------ccCCCCEEEEEEcCCeEEEEeC
Confidence                588999 777776443   2222222222110     00       0123456899999999999963

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.3e-26  Score=244.32  Aligned_cols=275  Identities=21%  Similarity=0.305  Sum_probs=205.0

Q ss_pred             eeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEE
Q 001258          458 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  537 (1113)
Q Consensus       458 ~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  537 (1113)
                      +....+|...|+|++|  |++  +|+||+.||+|+|||+.++++++++.+|.+.|.+++|    ++++|++|+.||.|++
T Consensus         8 i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i~~   79 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRV   79 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEE
T ss_pred             EeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeecccccccccc
Confidence            3356678889998775  677  7999999999999999999999999999999999986    3469999999999999


Q ss_pred             EEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEE-ccCC
Q 001258          538 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DADG  616 (1113)
Q Consensus       538 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~  616 (1113)
                      |++................                       ..+.+....++++..++.+.+|+..+....... ....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          80 WDVNTGEMLNTLIHHCEAV-----------------------LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             EESSSCCEEEEECCCCSCE-----------------------EEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             ccccccccccccccccccc-----------------------ccccccccceeecccccceeEeeccccccccccccccc
Confidence            9998766554443332221                       222333446899999999999999876543322 2222


Q ss_pred             CCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccc
Q 001258          617 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  696 (1113)
Q Consensus       617 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1113)
                      +...+..+.+  ....+++++.|+.+++||..++ +.+..+.+                                     
T Consensus       137 ~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~~-------------------------------------  176 (293)
T d1p22a2         137 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNG-------------------------------------  176 (293)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEEC-------------------------------------
T ss_pred             ccccccccee--cccccccccCCCceeeecCCCC-cEEEEEcc-------------------------------------
Confidence            3334444444  4557788888888888887655 21111100                                     


Q ss_pred             cccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEE
Q 001258          697 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  776 (1113)
Q Consensus       697 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  776 (1113)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (293)
T d1p22a2         177 --------------------------------------------------------------------------------  176 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeee
Q 001258          777 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF  855 (1113)
Q Consensus       777 vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~  855 (1113)
                                                              +...+..+.+  ++.++++++ ||+|++||+.+...+..+
T Consensus       177 ----------------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~  214 (293)
T d1p22a2         177 ----------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL  214 (293)
T ss_dssp             ----------------------------------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ----------------------------------------cccccccccC--CCCeEEEecCCCEEEEEecccceeeeee
Confidence                                                    2223333333  455777777 899999999998888888


Q ss_pred             cCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc---------ceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcE
Q 001258          856 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---------DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL  926 (1113)
Q Consensus       856 ~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v  926 (1113)
                      .++...+.+  +++ ++.+|++|+.||.|++||+.+         ...+..+.+|.+.|++++|  |+++|+|+|.|++|
T Consensus       215 ~~~~~~v~~--~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i  289 (293)
T d1p22a2         215 EGHEELVRC--IRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI  289 (293)
T ss_dssp             CCCSSCEEE--EEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE
T ss_pred             cccceeeee--ccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEE
Confidence            888877765  455 678999999999999999864         2456788999999999999  56789999999999


Q ss_pred             EEEe
Q 001258          927 CVWS  930 (1113)
Q Consensus       927 ~iwd  930 (1113)
                      ++||
T Consensus       290 ~iWD  293 (293)
T d1p22a2         290 LIWD  293 (293)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-26  Score=248.58  Aligned_cols=276  Identities=10%  Similarity=0.068  Sum_probs=205.7

Q ss_pred             cccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          415 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       415 ~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      ++.||.++|++++|+|    |++|+.||+|++||+.++        ..+|...|.+++|++++.   +++++.|++|++|
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w   72 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN   72 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence            5899999999999998    999999999999998763        357999999999998765   7999999999999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEecccc
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  574 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  574 (1113)
                      ++...+       ....+..+++.  +++..++ .+.++.+.+|+..+......+.....                    
T Consensus        73 ~~~~~~-------~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  122 (287)
T d1pgua2          73 GITKHE-------FGSQPKVASAN--NDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNSP--------------------  122 (287)
T ss_dssp             TEEEEE-------CSSCEEEEEEC--SSSEEEE-EETTSEEEEEETTTCCEEEEEECSSC--------------------
T ss_pred             cccccc-------cccceeeeeec--cCCceEE-Eeecccceeeeccceeeeeeccccce--------------------
Confidence            975432       23445666654  4444444 45667788998887665554433221                    


Q ss_pred             CceeEEEecCCCCEEEEEecC-CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccc
Q 001258          575 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  653 (1113)
Q Consensus       575 ~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  653 (1113)
                          ..+++++++.+++++.+ +.+++|++...+....+... +...+.+++|+|++.+|++|+.||.|++||+.++...
T Consensus       123 ----~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         123 ----GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ----EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ----eeeeeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeecccccc
Confidence                12334444567777765 57999999776655554432 3346899999999999999999999999998776221


Q ss_pred             eeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccC
Q 001258          654 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  733 (1113)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~  733 (1113)
                      ...+                                                                            
T Consensus       198 ~~~~----------------------------------------------------------------------------  201 (287)
T d1pgua2         198 TSRW----------------------------------------------------------------------------  201 (287)
T ss_dssp             ECCS----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1111                                                                            


Q ss_pred             CCCCCcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccC
Q 001258          734 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  813 (1113)
Q Consensus       734 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~  813 (1113)
                                    ..|...|.+++|+|.+...                                               
T Consensus       202 --------------~~h~~~v~~~~~~p~~~~~-----------------------------------------------  220 (287)
T d1pgua2         202 --------------AFRTSKINAISWKPAEKGA-----------------------------------------------  220 (287)
T ss_dssp             --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred             --------------cccccccceeeeccccccc-----------------------------------------------
Confidence                          1266788899988876521                                               


Q ss_pred             CCCCCCCccEEEEecCCCEEEEEe-CCeEEEEECCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          814 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       814 ~~~~~~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                                ..+.+++.++++|+ |++|++||+.+ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus       221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence                      22345778999998 99999999976 556777889999999999999 66 5788999999999996

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=1.4e-26  Score=264.51  Aligned_cols=365  Identities=9%  Similarity=0.005  Sum_probs=243.9

Q ss_pred             EEEcCCCCe-EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258          364 MDFHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1113)
Q Consensus       364 ~~~spdg~~-ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  442 (1113)
                      ..++.|.+. ++++++.||+|+|||+.+++.+..                   +..| ..+..++|||||++|++++.|+
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~   83 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDA   83 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCC
Confidence            346666554 457788899999999999998874                   4444 3689999999999999999999


Q ss_pred             eEEEEEccCCceee--eeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeec
Q 001258          443 IVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  520 (1113)
Q Consensus       443 ~i~iwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~  520 (1113)
                      +|++||+.+++...  .+....+|.+.+.+++|+|||++ +++++..++++++||..++.++..+.+|...+....+.+.
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            99999999887432  22334478888899999999995 4567778999999999999999999888777766665544


Q ss_pred             CCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEE
Q 001258          521 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIK  599 (1113)
Q Consensus       521 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  599 (1113)
                      +. ...+..+.|+...+|....................+...+.+.         .+..+.++|++++++++. .+..+.
T Consensus       163 ~~-~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~g~~~~~a~~~~~~~~  232 (426)
T d1hzua2         163 PR-VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP---------FLADGGWDSSHRYFMTAANNSNKVA  232 (426)
T ss_dssp             CC-EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCS---------SEEEEEECTTSCEEEEEETTCSEEE
T ss_pred             Cc-eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCC---------ccEeeeECCCCcEEEeeeeccccee
Confidence            33 3455666677666665554333333332222222222222232         556677788877777765 677799


Q ss_pred             EEECCCCceEEEEccCCCCCCcCeEEECCCCCE-EE--EEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          600 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LA--VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       600 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      +|+..+++.+................+...+.. +.  ..+.|+.+.+|+.....                         
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~-------------------------  287 (426)
T d1hzua2         233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKN-------------------------  287 (426)
T ss_dssp             EEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTT-------------------------
T ss_pred             eeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccc-------------------------
Confidence            999999998887765443333333443332221 11  11234444444432210                         


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                                                                      
T Consensus       288 --------------------------------------------------------------------------------  287 (426)
T d1hzua2         288 --------------------------------------------------------------------------------  287 (426)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEE-
Q 001258          757 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS-  835 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-  835 (1113)
                                                                 |....+.... .+.  +|...+..++|+||+++|++ 
T Consensus       288 -------------------------------------------~~~~~~~~~~-~l~--g~~~~v~~v~~sPdg~~l~v~  321 (426)
T d1hzua2         288 -------------------------------------------HPQYAWKKVA-ELQ--GQGGGSLFIKTHPKSSHLYVD  321 (426)
T ss_dssp             -------------------------------------------CTTTBTSEEE-EEE--CSSSCCCCEECCTTCSEEEEC
T ss_pred             -------------------------------------------cccccceEeE-EEe--cCCCceeEEEcCCCCceEEEe
Confidence                                                       0000000000 011  16677888888888888885 


Q ss_pred             ------Ee-CCeEEEEECCCCceeeee---------cCCCCCeeEEEEecCCCcEEE-EE----ecCCcEEEEEccccee
Q 001258          836 ------AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIA-IG----MDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       836 ------~s-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~la-~g----~~dg~v~iwd~~~~~~  894 (1113)
                            ++ +++|+|||+.+++...++         ..+...+..++||| ||++++ ++    +.+|.|+|||..+++.
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             ecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence                  33 689999999998876554         34566799999999 787664 32    3678999999999999


Q ss_pred             eeeecccccCeEEEEEcCCCCEE
Q 001258          895 KSKLKGHSKRITGLAFSHALNVL  917 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L  917 (1113)
                      ...+.++.      .++|+|++-
T Consensus       401 ~~~i~~~~------~~tp~Gk~~  417 (426)
T d1hzua2         401 KAVVKDPR------LITPTGKFN  417 (426)
T ss_dssp             EEEECCTT------CCSEEEEEE
T ss_pred             EEEECCCC------ccCCCceEe
Confidence            99888775      335677663

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2e-25  Score=240.32  Aligned_cols=234  Identities=18%  Similarity=0.307  Sum_probs=185.0

Q ss_pred             ccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCe
Q 001258          355 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  434 (1113)
Q Consensus       355 ~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  434 (1113)
                      -.|...|+|++|  ||++ ||+|+.||+|+|||+.+++.+.                   .+.+|.+.|++++|  ++++
T Consensus        12 ~~~~~~V~c~~~--d~~~-l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~   67 (293)
T d1p22a2          12 SETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERV   67 (293)
T ss_dssp             CSSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSE
T ss_pred             CCCCCCEEEEEE--cCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--ccce
Confidence            348889999765  7884 9999999999999999998876                   47899999999887  6889


Q ss_pred             EEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce---eeEeeccCcC
Q 001258          435 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAP  511 (1113)
Q Consensus       435 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~---~~~~~~h~~~  511 (1113)
                      |++|+.|+.|++|++..+....   ....+..  ....+.+...  .++++..++.+++||..+...   ...+..|...
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             eecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeeccccccccccccccccccc
Confidence            9999999999999999987654   2323332  2333444555  589999999999999987654   3455678888


Q ss_pred             EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE
Q 001258          512 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  591 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  591 (1113)
                      |..+.+.  .  ..+++++.|+.|++||+.+.+....+..+...+..+.++                       +.++++
T Consensus       141 v~~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~  193 (293)
T d1p22a2         141 VNVVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVS  193 (293)
T ss_dssp             EEEEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEE
T ss_pred             cccceec--c--cccccccCCCceeeecCCCCcEEEEEcccccccccccCC-----------------------CCeEEE
Confidence            8877753  3  478899999999999999888777777666655554443                       236999


Q ss_pred             EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          592 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       592 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                      ++.||.|++||+.+.+.+.....+..  .+  ..+++++.+|++++.||.|++||+...
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             ecCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence            99999999999999999888875532  33  456778899999999999999998654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.6e-25  Score=254.36  Aligned_cols=354  Identities=14%  Similarity=0.089  Sum_probs=247.6

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCCeEEEEEccCC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  452 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~i~iwd~~~~  452 (1113)
                      ++++.+.+|+|.|||..+++.+..                   +..| ..+..++|||||++|++++.|++|.+||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            468899999999999999999874                   3334 36999999999999999999999999999887


Q ss_pred             cee--eeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC-----------cCEEEEeeee
Q 001258          453 DEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE-----------APVYSVCPHH  519 (1113)
Q Consensus       453 ~~~--~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~-----------~~v~~~~~~~  519 (1113)
                      +..  ..+....+|.+.+.+.+|+|||++ ++++++.+++|++||..+++++..+..|.           .....+.+++
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~  172 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH  172 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS
T ss_pred             CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC
Confidence            632  333344567788888999999995 46888999999999999999998876543           3344555544


Q ss_pred             cCCce-EEEEEecCCcEEEEEcCCCCCeeeee-CCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCC
Q 001258          520 KENIQ-FIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF  596 (1113)
Q Consensus       520 ~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  596 (1113)
                        +|. ++++...++.|.+||..+.+...... ..+.....++++|+|                     +++++++ .++
T Consensus       173 --dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg---------------------~~~~va~~~~~  229 (432)
T d1qksa2         173 --YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH---------------------RYFITAANARN  229 (432)
T ss_dssp             --SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTS---------------------CEEEEEEGGGT
T ss_pred             --CCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCC---------------------CEEEEeccccc
Confidence              344 45677778999999988755433222 223334445555555                     4566555 577


Q ss_pred             cEEEEECCCCceEEEEccCC---CCCCcCeEEECCCCCEEEEEE-CCCcEEEEEcCCCccceeccccccccccccCCCCC
Q 001258          597 SIKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  672 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  672 (1113)
                      .+.++|..+++.+..+....   +........+...+...++.. .++.+.+|+.....                     
T Consensus       230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~---------------------  288 (432)
T d1qksa2         230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG---------------------  288 (432)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------------------
T ss_pred             eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc---------------------
Confidence            89999999988887765332   111222233333333333332 24555555432210                     


Q ss_pred             CCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccC
Q 001258          673 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  752 (1113)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~  752 (1113)
                                                                                              .  ..+..
T Consensus       289 ------------------------------------------------------------------------~--~~~~~  294 (432)
T d1qksa2         289 ------------------------------------------------------------------------H--PDNAW  294 (432)
T ss_dssp             ------------------------------------------------------------------------C--TTTBT
T ss_pred             ------------------------------------------------------------------------c--ccccc
Confidence                                                                                    0  11445


Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      .+....+++++..+++++.+...++|.....                               ..|.....++++ ||++.
T Consensus       295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------------------------------~~~~~~~~sv~v-pDg~~  342 (432)
T d1qksa2         295 KILDSFPALGGGSLFIKTHPNSQYLYVDATL-------------------------------NPEAEISGSVAV-FDIKA  342 (432)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTT-------------------------------CSSHHHHTCEEE-EEGGG
T ss_pred             EEEEEEEcCCCCeEEEEecCCccceeecccC-------------------------------CCCCCeeeEEEE-Eechh
Confidence            6778889999988888888888888864311                               013333445665 99999


Q ss_pred             EEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-----cCCcEEEEEcccceeeeeeccc
Q 001258          833 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH  901 (1113)
Q Consensus       833 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-----~dg~v~iwd~~~~~~~~~l~~h  901 (1113)
                      +++++ |+++++|++.++..   +..|...+.+++||| ||++++++.     .+|.|.|||..++++...+++.
T Consensus       343 la~~s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         343 MTGDGSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             CCCSSSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             hcccccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            99998 89999999866533   335667899999999 888775553     4689999999999988887754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=1.8e-26  Score=257.58  Aligned_cols=193  Identities=16%  Similarity=0.130  Sum_probs=153.4

Q ss_pred             EEEEEcC-CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC
Q 001258          362 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  440 (1113)
Q Consensus       362 ~~~~~sp-dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  440 (1113)
                      ..-.||| ||++ +|+++ +|.|.+||..++..+.                     .+|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 9996 77765 6899999998876643                     268999999999999999998765


Q ss_pred             C--CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeee
Q 001258          441 R--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  518 (1113)
Q Consensus       441 d--~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  518 (1113)
                      +  ..|++||+.+++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.++++...+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            5  37999999988754    3778999999999999999  79999999999999999999999999999999999976


Q ss_pred             ecCCceEEEEEe----------cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCE
Q 001258          519 HKENIQFIFSTA----------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  588 (1113)
Q Consensus       519 ~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  588 (1113)
                      +  +|++|+.++          .++.+++||+.+.+.. .+..+...+..++|+|+|+                     +
T Consensus       137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~---------------------~  192 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSK---------------------N  192 (360)
T ss_dssp             T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSC---------------------E
T ss_pred             c--ceeeeeeeccccccceeeccccceeeeccccCcee-eecccccccccccccCCCC---------------------E
Confidence            5  557787543          3456899999864332 3333444455555555554                     7


Q ss_pred             EEEEecCCcEEEEECCCCc
Q 001258          589 FLAAGDDFSIKFWDMDSVQ  607 (1113)
Q Consensus       589 l~~~~~dg~i~iwd~~~~~  607 (1113)
                      |++++.++.+.+|+.....
T Consensus       193 l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         193 LYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EEEEESCCCCCEECSSSSC
T ss_pred             EEEEeCCCceEcccccccc
Confidence            8999999999999976543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.7e-26  Score=254.05  Aligned_cols=284  Identities=10%  Similarity=0.028  Sum_probs=208.7

Q ss_pred             ccCceEEEEEeCCCceEEEeecCC--eEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          750 RATKISRLIFTNSGNAILALASNA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       750 ~~~~i~~~~~s~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                      |...|.+++|+|||+.|++++.+.  .+++|+..                      ++....  +.  .|...+.+++|+
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~----------------------~~~~~~--~~--~~~~~v~~~~~s   94 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR----------------------TGKAEK--FE--ENLGNVFAMGVD   94 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT----------------------TCCEEE--CC--CCCCSEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC----------------------CCcEEE--ee--CCCceEEeeeec
Confidence            667899999999999998877653  67777765                      333322  12  288899999999


Q ss_pred             cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe----------cCCcEEEEEcccceeee
Q 001258          828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~----------~dg~v~iwd~~~~~~~~  896 (1113)
                      |+|++|++++ ++.+++|++.+++....+..+...+.+++|+| +|++||.+.          .++.+++||+.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            9999999998 89999999999999999998999999999999 889988654          44579999999877654


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccc--cccCCCCCCCCCCCceEEEccCCcEEEEE-cC-
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-  972 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~spdg~~l~~~-~d-  972 (1113)
                       +..|...+..++|+|||++|++++.|+.+++|+...........  ......+.   ..+..+.|++++..++.+ .+ 
T Consensus       174 -~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~  249 (360)
T d1k32a3         174 -ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL  249 (360)
T ss_dssp             -CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred             -ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence             44567788999999999999999999999999976643221100  00011111   234556778888776652 11 


Q ss_pred             ----CeEEEEeCCccceeeccccCCCCCCeeEEEECCC---CCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCccc
Q 001258          973 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1045 (1113)
Q Consensus       973 ----~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~ 1045 (1113)
                          ..+..++...+......   .+...+..+.+.+.   +.++++++.++.|++||+.+++..           .|.+
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-----------~~~~  315 (360)
T d1k32a3         250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT-----------EVKN  315 (360)
T ss_dssp             TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE-----------EEEE
T ss_pred             cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE-----------EecC
Confidence                23444455555443322   22344455555444   446788889999999999987654           3445


Q ss_pred             CccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCCc
Q 001258         1046 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1081 (1113)
Q Consensus      1046 ~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1081 (1113)
                      .|.  .++|+| ||++|++++.||+|++||+++++.
T Consensus       316 ~v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~~  348 (360)
T d1k32a3         316 NLT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPED  348 (360)
T ss_dssp             EEE--EEEECT-TSCEEEEEETTSCEEEEESSCTTS
T ss_pred             CcC--EEEECC-CCCEEEEEECCCeEEEEECCCCCc
Confidence            565  488999 899999999999999999999883

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=5.9e-25  Score=242.41  Aligned_cols=292  Identities=11%  Similarity=0.074  Sum_probs=211.7

Q ss_pred             ccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEe
Q 001258          748 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  827 (1113)
Q Consensus       748 ~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s  827 (1113)
                      .+|...|++++|+|++++|++++.||+|+|||+......                  ..+..  .  .+|...|.+++|+
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~------------------~~~~~--~--~~h~~~V~~v~f~   65 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------VDLLQ--S--LRYKHPLLCCNFI   65 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------EEEEE--E--EECSSCEEEEEEE
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc------------------eEEEE--e--cCCCCCEEEEEEe
Confidence            458899999999999999999999999999998642210                  00111  1  1288999999999


Q ss_pred             cCC-CEEEEEe-CCeEEEEECCCCceeeeecCCCCCee-EEEEecCCCcEEEEEecCCcEEEEEcccceee----eeecc
Q 001258          828 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK----SKLKG  900 (1113)
Q Consensus       828 ~~~-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~----~~l~~  900 (1113)
                      |++ .+|++|+ |+.|++|++...........+..... ...+.+ +...+++++.|+.+++||+.++...    .....
T Consensus        66 ~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~  144 (342)
T d1yfqa_          66 DNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY-GDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             ESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE-TTTEEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             CCCCCEEEEcccccceeeeeccccccccccccccccccccccccc-ccccccccccccccceeeccccccceeeeccccc
Confidence            875 5788887 99999999998877776665555444 444555 7889999999999999998764333    22222


Q ss_pred             c--ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEE-EccCCcEEEE-EcCCeEE
Q 001258          901 H--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ-FHQDQIHFLV-VHETQLA  976 (1113)
Q Consensus       901 h--~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~spdg~~l~~-~~d~~v~  976 (1113)
                      +  ......+.+.+++..+++++.|+.|++|++................     ..+.... ++.++..+++ +.|+.+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~s~dg~~~  219 (342)
T d1yfqa_         145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK-----YQIRDVALLPKEQEGYACSSIDGRVA  219 (342)
T ss_dssp             SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS-----SCEEEEEECSGGGCEEEEEETTSEEE
T ss_pred             ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc-----cceeeeEeecCCCCEEEeecCCCeEE
Confidence            2  2344566778889999999999999999998765433222211111     1334444 4456667777 6899999


Q ss_pred             EEeCCccceeec-------------cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          977 IFETTKLECVKQ-------------WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       977 v~d~~~~~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                      +|+.........             .....|...|++++|+|++.+|++|+.||.|+|||+.+++.+..+.      ..|
T Consensus       220 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~------~~~  293 (342)
T d1yfqa_         220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA------KFN  293 (342)
T ss_dssp             EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC------CCS
T ss_pred             EEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec------CCC
Confidence            999765432211             1123567789999999999999999999999999999999887764      122


Q ss_pred             ccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccC
Q 001258         1044 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      .  +.  .++|+| +|++|++++.|+++++|....
T Consensus       294 ~--~~--~~~~s~-~~~~l~~a~sdd~~~~~~~~~  323 (342)
T d1yfqa_         294 E--DS--VVKIAC-SDNILCLATSDDTFKTNAAID  323 (342)
T ss_dssp             S--SE--EEEEEE-CSSEEEEEEECTHHHHCSSSC
T ss_pred             C--CE--EEEEEe-CCCEEEEEEcCCcEEEeeeeC
Confidence            2  22  356677 678999999999999987644

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=1.6e-24  Score=246.10  Aligned_cols=361  Identities=9%  Similarity=0.005  Sum_probs=249.3

Q ss_pred             CCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCcee--eEe---
Q 001258          431 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--YIF---  505 (1113)
Q Consensus       431 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~--~~~---  505 (1113)
                      +.-++++.+.||+|.|||..+++.++   ++..| ..+..++|||||+  ++++++.|++|++||+.+++..  ..+   
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~---~~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKT---VLDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEE---EEECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEE---EEeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            33445788899999999999999887   56555 4699999999999  7888999999999999887643  233   


Q ss_pred             eccCcCEEEEeeeecCCceEE-EEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          506 EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      .+|.+.+.+..|  ++||++| ++++.++.|++||..+.+....+..+...+....+.++++          ...+.+++
T Consensus       105 ~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~~s~  172 (432)
T d1qksa2         105 SEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPR----------VAAILASH  172 (432)
T ss_dssp             SEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCC----------EEEEEECS
T ss_pred             CCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCc----------eeEEEECC
Confidence            245555555554  4566765 7888899999999999888877776655555555555554          34466778


Q ss_pred             CCCEE-EEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC-CcEEEEEcCCCccceeccccccc
Q 001258          585 TKNRF-LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLAY  662 (1113)
Q Consensus       585 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~  662 (1113)
                      ++..+ ++...++.|.+||..+++.........+ ..+..++|+|+|+++++++.+ +.+.+++..++ +....+.....
T Consensus       173 dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~~  250 (432)
T d1qksa2         173 YRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGGQ  250 (432)
T ss_dssp             SSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSSS
T ss_pred             CCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCcc
Confidence            77765 4566789999999988775544332222 246789999999988877764 46788887766 33322211000


Q ss_pred             cccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCccee
Q 001258          663 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  742 (1113)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~  742 (1113)
                      .                                                                               
T Consensus       251 ~-------------------------------------------------------------------------------  251 (432)
T d1qksa2         251 T-------------------------------------------------------------------------------  251 (432)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             cccCcccccCceEEEEEeCCCceEEEee-cCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCc
Q 001258          743 LRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  821 (1113)
Q Consensus       743 ~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v  821 (1113)
                            .+............+....+.. .++.+.+|.....                      .     ..  .+...+
T Consensus       252 ------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~----------------------~-----~~--~~~~~v  296 (432)
T d1qksa2         252 ------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPE----------------------G-----HP--DNAWKI  296 (432)
T ss_dssp             ------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTT----------------------T-----CT--TTBTSE
T ss_pred             ------cccCcccceecCCCCceecccccCCceEEecccccc----------------------c-----cc--ccccEE
Confidence                  0111122222222333222222 2567777754311                      0     01  156678


Q ss_pred             cEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258          822 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  900 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  900 (1113)
                      ....+++++..+++++ +++.++|+..+...      |.....++++ | |++.|++++.|+.+++|++.++..   +..
T Consensus       297 ~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~------~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~~---l~~  365 (432)
T d1qksa2         297 LDSFPALGGGSLFIKTHPNSQYLYVDATLNP------EAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWAG---ITE  365 (432)
T ss_dssp             EEEEECSCSCCCCEECCTTCSEEEEECTTCS------SHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHHT---CCS
T ss_pred             EEEEEcCCCCeEEEEecCCccceeecccCCC------CCCeeeEEEE-E-echhhcccccCCceEecccccccc---cCC
Confidence            8899999999888887 89999998765332      3333345555 7 899999999999999999876643   345


Q ss_pred             cccCeEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcc
Q 001258          901 HSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK  936 (1113)
Q Consensus       901 h~~~V~~l~~s~d~~~L~s~s-----~D~~v~iwd~~~~~~  936 (1113)
                      |...|.+++|||||++|+...     .++.|+|||..+.+.
T Consensus       366 ~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         366 GQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            778899999999999886553     468899999999654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=5.2e-23  Score=234.48  Aligned_cols=343  Identities=12%  Similarity=0.046  Sum_probs=226.9

Q ss_pred             eEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee
Q 001258          469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD  548 (1113)
Q Consensus       469 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  548 (1113)
                      ..+.++.|.+.+++++.+.|++|+|||+.+++++.++..|. .+..++|+  +||+++++++.|+.|++||+.+.+....
T Consensus        22 ~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafS--PDGk~l~~~~~d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          22 KKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMS--ASGRYLLVIGRDARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             SSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEEC--TTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             CcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEEC--CCCCEEEEEeCCCCEEEEEccCCceeEE
Confidence            34457777777678999999999999999999999999774 58888865  5778999999999999999998776543


Q ss_pred             eeC-CCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEE-EecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE
Q 001258          549 YEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF  626 (1113)
Q Consensus       549 ~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~  626 (1113)
                      ... .......+.++                 .+|+|+|+++++ +..++.+.+||..++.++..+..+..  .+....+
T Consensus        99 ~~i~~~~~~~~~~~s-----------------~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~  159 (426)
T d1hzua2          99 AEIKIGIEARSVESS-----------------KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTY  159 (426)
T ss_dssp             EEEECCSEEEEEEEC-----------------CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCE
T ss_pred             EEEeCCCCCcceEEe-----------------eeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--Cccceee
Confidence            321 11112222222                 234455556644 55899999999999999888876543  4666777


Q ss_pred             CCCCCE-EEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCC
Q 001258          627 NKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  705 (1113)
Q Consensus       627 s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (1113)
                      .+++.. .++.+.|+...++....... +........                                           
T Consensus       160 ~~~~~~~~i~~s~d~~~~~~~~~~~~~-i~~~~~~~~-------------------------------------------  195 (426)
T d1hzua2         160 HPEPRVAAIIASHEHPEFIVNVKETGK-VLLVNYKDI-------------------------------------------  195 (426)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEETTTTE-EEEEECSSS-------------------------------------------
T ss_pred             cCCCceeEEEECCCCCEEEEecCCCCe-EEEEEeccc-------------------------------------------
Confidence            776654 45556666666654433211 110000000                                           


Q ss_pred             CCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeecC-CeEEEEEccccc
Q 001258          706 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTE  784 (1113)
Q Consensus       706 ~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~  784 (1113)
                                        ..+.+..                 ..+...+..+.|+|++++++++..+ ..+.+++.....
T Consensus       196 ------------------~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~  240 (426)
T d1hzua2         196 ------------------DNLTVTS-----------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRR  240 (426)
T ss_dssp             ------------------SSCEEEE-----------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTE
T ss_pred             ------------------cceeeEE-----------------eccCCccEeeeECCCCcEEEeeeecccceeeeeccccc
Confidence                              0000000                 1255678899999999988887765 677777765322


Q ss_pred             cCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE-E-EEEe--CCeEEEEECCC-------Cceee
Q 001258          785 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY-V-MSAS--GGKISLFNMMT-------FKTMA  853 (1113)
Q Consensus       785 ~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~-l-~~~s--dg~i~vwd~~~-------~~~~~  853 (1113)
                      .                      ......+ .+........+...+.. + +...  |+.+.+|+...       ++...
T Consensus       241 ~----------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~  297 (426)
T d1hzua2         241 L----------------------SALVDVG-KTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA  297 (426)
T ss_dssp             E----------------------EEEEECS-SCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEE
T ss_pred             E----------------------EEEeccC-CcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeE
Confidence            1                      1110000 01222233333333332 2 2222  67777777643       46778


Q ss_pred             eecCCCCCeeEEEEecCCCcEEEE-------EecCCcEEEEEcccceeeeee---------cccccCeEEEEEcCCCCEE
Q 001258          854 TFMPPPPAATFLAFHPQDNNIIAI-------GMDDSSIQIYNVRVDEVKSKL---------KGHSKRITGLAFSHALNVL  917 (1113)
Q Consensus       854 ~~~~~~~~i~~l~~s~~d~~~la~-------g~~dg~v~iwd~~~~~~~~~l---------~~h~~~V~~l~~s~d~~~L  917 (1113)
                      .+.+|...+..++|+| ++++|++       +..|++|+|||+.+++...++         ..|...|.+++|||||+++
T Consensus       298 ~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i  376 (426)
T d1hzua2         298 ELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV  376 (426)
T ss_dssp             EEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEE
T ss_pred             EEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEE
Confidence            8999999999999999 8999984       556889999999998766544         3466789999999999977


Q ss_pred             E-EE----eCCCcEEEEeCCCCcc
Q 001258          918 V-SS----GADSQLCVWSSDGWEK  936 (1113)
Q Consensus       918 ~-s~----s~D~~v~iwd~~~~~~  936 (1113)
                      + ++    +.|+.|+|||..+.+.
T Consensus       377 ~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         377 WFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             EEEECCCTTSCCEEEEEETTTTEE
T ss_pred             EEEEecCCCCCCeEEEEECCCCeE
Confidence            4 43    3578899999999653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=1.3e-20  Score=208.03  Aligned_cols=325  Identities=10%  Similarity=0.014  Sum_probs=210.2

Q ss_pred             EEEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeee-cccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeE
Q 001258          426 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       426 l~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~  504 (1113)
                      ++|+++++||++++.|++|.|||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            5789999999999999999999999998766   454 45667899999999995 457788899999999999998877


Q ss_pred             eeccCcC------EEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCcee
Q 001258          505 FEGHEAP------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1113)
Q Consensus       505 ~~~h~~~------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  578 (1113)
                      +......      +..++|  ++||.++++++.+.....                                         
T Consensus        78 ~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~-----------------------------------------  114 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLN-----------------------------------------  114 (346)
T ss_dssp             EESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred             ecccccccccCCceEEEEE--ecCCCEEEEEecCCccee-----------------------------------------
Confidence            6533221      112222  223333333322211110                                         


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccc
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                                ......++.+.+|+..+++....+..+.....+..+.+++++.+++++   +.+.+|+..++ +....+.
T Consensus       115 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~  180 (346)
T d1jmxb_         115 ----------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG---PDIYKMDVKTG-KYTVALP  180 (346)
T ss_dssp             ----------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEES---SSEEEECTTTC-CEEEEEC
T ss_pred             ----------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeC---CcceEEEccCC-CEEEEEe
Confidence                      122345778899998887655444332223346677888888776643   56889998877 4444443


Q ss_pred             cccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcce-eeccCCCceeeEeccCCCCC
Q 001258          659 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR-ITEESNDKSKVWKLTELSEP  737 (1113)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~d~~i~iw~~~~~~~~  737 (1113)
                      .+....                                          .....+++..+ +....++.+.+++..     
T Consensus       181 ~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  213 (346)
T d1jmxb_         181 LRNWNR------------------------------------------KGYSAPDVLYFWPHQSPRHEFSMLYTI-----  213 (346)
T ss_dssp             STTCCC------------------------------------------TTBCCCBCCCCCCCCCTTCEEEEEEEE-----
T ss_pred             cCCCcc------------------------------------------ceEEeccccEEEEEecCCCceEeeeee-----
Confidence            222110                                          01111222222 222223333333221     


Q ss_pred             CcceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCC
Q 001258          738 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  817 (1113)
Q Consensus       738 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~  817 (1113)
                                         ..+.+....+.+...++.+.+|+..                      ++.........  +
T Consensus       214 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~  250 (346)
T d1jmxb_         214 -------------------ARFKDDKQDPATADLLYGYLSVDLK----------------------TGKTHTQEFAD--L  250 (346)
T ss_dssp             -------------------EEC-------CCCEEEEEEEEEETT----------------------TCCEEEEEEEE--C
T ss_pred             -------------------eeeccCceeEeeccCCceEEEEECC----------------------CCceEEEEeec--c
Confidence                               1112223333444445566666554                      33322222222  6


Q ss_pred             CCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeee
Q 001258          818 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  897 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~  897 (1113)
                      ...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|+|||+.+++.+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            777888999999999998888899999999999888876 445699999999 899999999999999999999999988


Q ss_pred             eccccc
Q 001258          898 LKGHSK  903 (1113)
Q Consensus       898 l~~h~~  903 (1113)
                      +..+.+
T Consensus       329 i~~p~g  334 (346)
T d1jmxb_         329 IKLPGG  334 (346)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            875443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=5.3e-20  Score=202.16  Aligned_cols=312  Identities=10%  Similarity=0.036  Sum_probs=204.7

Q ss_pred             CeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          433 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       433 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      +||++++.|++|.|||+.+++.++.+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999999877632 23345567899999999995 44678889999999999999998887654332


Q ss_pred             -----EEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          513 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       513 -----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                           ..++|+  +++.+++++..+.....|                                                 
T Consensus        80 ~~~~~~~v~~s--~dg~~l~~~~~~~~~~~~-------------------------------------------------  108 (337)
T d1pbyb_          80 RVKSLFGAALS--PDGKTLAIYESPVRLELT-------------------------------------------------  108 (337)
T ss_dssp             EEECTTCEEEC--TTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred             cccceeeEEEc--CCCcEEEEeecCCcceee-------------------------------------------------
Confidence                 233333  344555555433332222                                                 


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceecccccccccccc
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  667 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  667 (1113)
                        .....++.+.+||..+++....+....   .+..++|+|||+++++++.  .+.+||..++ +....+..+.....  
T Consensus       109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~~--  178 (337)
T d1pbyb_         109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEAE--  178 (337)
T ss_dssp             --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTTT--
T ss_pred             --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCcccc--
Confidence              123356788999999999888887543   4788999999999999864  5778998887 34433322211100  


Q ss_pred             CCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCccee-eccCCCceeeEeccCCCCCCcceecccC
Q 001258          668 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEPNQCRSLRLP  746 (1113)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~iw~~~~~~~~~~~~~~~~~  746 (1113)
                                                              ....+++..+. .+...+....                  
T Consensus       179 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~------------------  200 (337)
T d1pbyb_         179 ----------------------------------------TYAQPDVLAVWNQHESSGVMAT------------------  200 (337)
T ss_dssp             ----------------------------------------TBCCCBCCCCCCCCTTTTEEEE------------------
T ss_pred             ----------------------------------------ceecCCcceeeccccccceeee------------------
Confidence                                                    00001111110 0111111111                  


Q ss_pred             cccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEE
Q 001258          747 ENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  826 (1113)
Q Consensus       747 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~  826 (1113)
                              .......+.........++.+.+|+..                      ++.........  +...+..+++
T Consensus       201 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~--~~~~~~~~~~  248 (337)
T d1pbyb_         201 --------PFYTARKDIDPADPTAYRTGLLTMDLE----------------------TGEMAMREVRI--MDVFYFSTAV  248 (337)
T ss_dssp             --------EEEEEBTTSCTTSGGGEEEEEEEEETT----------------------TCCEEEEEEEE--CSSCEEEEEE
T ss_pred             --------eeeeeeeccceeeecccCccEEEEEcC----------------------CCcEEEEEecC--CCcceEEEEe
Confidence                    111111222222223333445555443                      33332222222  5667788899


Q ss_pred             ecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc
Q 001258          827 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  900 (1113)
Q Consensus       827 s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~  900 (1113)
                      ++++.+++++ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||.|+|||..+++.+.+++-
T Consensus       249 ~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         249 NPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             CTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             cccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            9999988765 6899999999999988876 456789999999 899999999999999999999998888754

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.86  E-value=3.8e-19  Score=191.73  Aligned_cols=227  Identities=17%  Similarity=0.168  Sum_probs=167.0

Q ss_pred             eEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE-EEeCCCeEEEEEcc
Q 001258          372 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYH  450 (1113)
Q Consensus       372 ~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~d~~i~iwd~~  450 (1113)
                      |+.++++.|++|.|||+++++.+...                   . ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i-------------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATI-------------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-------------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEE-------------------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            56778889999999999999877641                   1 123578999999999885 56678999999999


Q ss_pred             CCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe
Q 001258          451 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  530 (1113)
Q Consensus       451 ~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  530 (1113)
                      +++.+.   ++..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+ ....+++++++.. .+++++.
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~-~~~~~~~  135 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGK-KLYVTNN  135 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSS-EEEEEET
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecCCC-eeeeeec
Confidence            998766   555554 5789999999996 5677888899999999999988888755 4566777665432 3456667


Q ss_pred             cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceE
Q 001258          531 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLL  609 (1113)
Q Consensus       531 ~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~  609 (1113)
                      .++.+.+|+..+......+.... .+..+.+++++.                     .+++++ .++.+.+|+....+..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~  193 (301)
T d1l0qa2         136 GDKTVSVINTVTKAVINTVSVGR-SPKGIAVTPDGT---------------------KVYVANFDSMSISVIDTVTNSVI  193 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCS-SEEEEEECTTSS---------------------EEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccceeeeeccccceeeecccCC-CceEEEeecccc---------------------ceeeecccccccccccccceeee
Confidence            78899999998866555544332 244455555544                     566655 4577888888877777


Q ss_pred             EEEccCCCCCCcCeEEECCCCCEEEEEECC---CcEEEEEcCCC
Q 001258          610 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDG  650 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~  650 (1113)
                      ..+....   .+..++|++++..++++..+   +.|++||..++
T Consensus       194 ~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         194 DTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             ecccccC---CcceeeccccccccccccccceeeeeeeeecCCC
Confidence            7665443   36788999999988766433   56888887655

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=3.1e-20  Score=204.87  Aligned_cols=327  Identities=9%  Similarity=-0.022  Sum_probs=215.6

Q ss_pred             EecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEE-EECCCcEEEEEcCCCccceecccc
Q 001258          581 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFEN  659 (1113)
Q Consensus       581 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~  659 (1113)
                      +++++++++++++.++.|.+||+.+++.+..+..+.. ..+.+++|+|||+++++ +..++.|.+||+.++ +....+..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence            4667777999999999999999999999998875432 24679999999998754 557899999999888 33332211


Q ss_pred             ccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCc
Q 001258          660 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  739 (1113)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~  739 (1113)
                      ....                                                                            
T Consensus        81 ~~~~----------------------------------------------------------------------------   84 (346)
T d1jmxb_          81 SSVP----------------------------------------------------------------------------   84 (346)
T ss_dssp             CCST----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             ceecccCcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCC
Q 001258          740 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  819 (1113)
Q Consensus       740 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~  819 (1113)
                              ......+..++|+|||+.++++..+.....|...          .....+.+|+..++...... .......
T Consensus        85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~----------~~~~~i~~~~~~~~~~~~~~-~~~~~~~  145 (346)
T d1jmxb_          85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV----------VKPPRLEVFSTADGLEAKPV-RTFPMPR  145 (346)
T ss_dssp             --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE----------ECCCEEEEEEGGGGGGBCCS-EEEECCS
T ss_pred             --------cccCCceEEEEEecCCCEEEEEecCCcceeeeec----------cCcceEEEEecccceeeeEE-EeeeccC
Confidence                    0011234467889999888776643222111100          00011223333333322110 0001234


Q ss_pred             CccEEEEecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          820 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .+..+.++++++.++.  ++.+.+|++.+++.+..+..+. ....+.++|+...+++.+..++.+.+++..         
T Consensus       146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  213 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTI---------  213 (346)
T ss_dssp             SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEE---------
T ss_pred             ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeee---------
Confidence            5566777777776654  4568999999999888877543 356677888333344445555566655422         


Q ss_pred             ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEe
Q 001258          900 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  979 (1113)
Q Consensus       900 ~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d  979 (1113)
                              ..+......++++..+..+.+|++.++.........    +.   ..+..+.+++++.+++...++.+.+||
T Consensus       214 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~d  278 (346)
T d1jmxb_         214 --------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKYD  278 (346)
T ss_dssp             --------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEEE
T ss_pred             --------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEEE
Confidence                    122334455666777788999999886543321111    11   256788999999988887778899999


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      ..+++.+..+..   ...+.+++|+|||++|++++.|+.|+|||+.+++.+.++.
T Consensus       279 ~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         279 LKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             TTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            999998887753   4579999999999999999999999999999999999987

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=3.9e-20  Score=203.19  Aligned_cols=294  Identities=11%  Similarity=0.072  Sum_probs=191.6

Q ss_pred             CEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEE-EEECCCcEEEEEcCCCccceecccccccccc
Q 001258          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS  665 (1113)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  665 (1113)
                      .++++++.|++|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.+..+..+...  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~--   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE--   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence            369999999999999999999999998765555678999999999875 5667899999999988 444333221100  


Q ss_pred             ccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceeccc
Q 001258          666 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  745 (1113)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~  745 (1113)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (337)
T d1pbyb_          79 --------------------------------------------------------------------------------   78 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CcccccCceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEE
Q 001258          746 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  825 (1113)
Q Consensus       746 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~  825 (1113)
                         .+...+..++|+|+++.++++..+.....|..                                             
T Consensus        79 ---~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~---------------------------------------------  110 (337)
T d1pbyb_          79 ---ERVKSLFGAALSPDGKTLAIYESPVRLELTHF---------------------------------------------  110 (337)
T ss_dssp             ---EEEECTTCEEECTTSSEEEEEEEEEEECSSCE---------------------------------------------
T ss_pred             ---ccccceeeEEEcCCCcEEEEeecCCcceeeec---------------------------------------------
Confidence               01223346788899888877766543332211                                             


Q ss_pred             EecCCCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-
Q 001258          826 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-  904 (1113)
Q Consensus       826 ~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-  904 (1113)
                               ...++.+.+||..+++....+.. ...+..++|+| +++++++++.  .+.+||..+++....+..+... 
T Consensus       111 ---------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~~  177 (337)
T d1pbyb_         111 ---------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWEA  177 (337)
T ss_dssp             ---------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTTT
T ss_pred             ---------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCccc
Confidence                     11134455555555555554442 23345555555 5555555432  2455555555544444322110 


Q ss_pred             ----------------------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258          905 ----------------------ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       905 ----------------------V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                                            +.......+.......+.++.+.+|++.++.........    +   ...+..++++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~  250 (337)
T d1pbyb_         178 ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI----M---DVFYFSTAVNP  250 (337)
T ss_dssp             TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE----C---SSCEEEEEECT
T ss_pred             cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC----C---CcceEEEEecc
Confidence                                  000011111222222334556888888876543221111    1   12467789999


Q ss_pred             CCcEEEEEcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          963 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       963 dg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      ++.++++. ++.+++||+.+++.+..+.   +...+.+++|+|||++|++++.|+.|+|||..+++.+.++..
T Consensus       251 ~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         251 AKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            99988765 5899999999999988875   356789999999999999999999999999999999998874

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=7.4e-19  Score=189.42  Aligned_cols=256  Identities=15%  Similarity=0.148  Sum_probs=191.4

Q ss_pred             CcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEE
Q 001258          348 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  427 (1113)
Q Consensus       348 ~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  427 (1113)
                      ..++...+.....+..++|||||++++++++.++.|.+||+.+++.+..                   +..|. .+..++
T Consensus        21 t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~-~~~~~~   80 (301)
T d1l0qa2          21 SNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS-SPQGVA   80 (301)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS-SEEEEE
T ss_pred             CCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc-cccccc
Confidence            4456777777788999999999998778888999999999999988763                   33333 578999


Q ss_pred             EcCCCCeEEEE-eCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          428 WSPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       428 ~spdg~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      |++++++++++ ..++.+.+|+..+++...   .+. +...+.+++|+|++.. +++++..++.+.+|+..++..+..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TVK-TGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTKAVINTVS  155 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccceeeecccccceeee---ecc-ccccceEEEeecCCCe-eeeeeccccceeeeeccccceeeecc
Confidence            99999976654 567889999999987665   343 4567899999999996 56778889999999999999888887


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEec-CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCC
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  585 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  585 (1113)
                      .+ ..+..+.+++  ++..+++++. ++.+.+|+........... ....+..+++++++.                   
T Consensus       156 ~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~-------------------  212 (301)
T d1l0qa2         156 VG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGT-------------------  212 (301)
T ss_dssp             CC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSS-------------------
T ss_pred             cC-CCceEEEeec--cccceeeecccccccccccccceeeeeccc-ccCCcceeecccccc-------------------
Confidence            54 4567777654  4456666655 4667777766543333332 233345556666555                   


Q ss_pred             CCEEEEEe---cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcCCCccceecc
Q 001258          586 KNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTF  657 (1113)
Q Consensus       586 ~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~  657 (1113)
                        .++.++   .++.|++||..+++.+..+....   .+.+++|+|||++| ++++.++.|++||+.++ +.+..+
T Consensus       213 --~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~-~~~~~~  282 (301)
T d1l0qa2         213 --KAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN-TITATM  282 (301)
T ss_dssp             --EEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred             --ccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC-eEEEEE
Confidence              454433   45789999999999988876543   47899999999987 56677899999999998 555544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=4e-18  Score=190.12  Aligned_cols=164  Identities=9%  Similarity=-0.016  Sum_probs=120.3

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEE----ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      .+..++.+++++|||++++++.    +..+.|.+||..+++.+..                   +..+.  ...++||||
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpD   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHS   76 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCC
Confidence            4788999999999999865542    2346799999999998764                   23333  236999999


Q ss_pred             CCeEEEEe----------CCCeEEEEEccCCceeeeeeeeecccCCe-------eEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          432 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       432 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      |++|++++          .++.|.|||..+++.+.   .+..+....       ..+.|+++++.+++.....++.+.+|
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            99999875          35789999999998765   344443332       56889999997556666677889999


Q ss_pred             eCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee
Q 001258          495 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD  548 (1113)
Q Consensus       495 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  548 (1113)
                      +...++.....    ....++.+++... ..+++.+.|+.+.+|+.........
T Consensus       154 ~~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         154 VQGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             eccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEE
Confidence            98877665443    3345666666543 4667889999999999887655443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.3e-17  Score=184.40  Aligned_cols=206  Identities=11%  Similarity=0.040  Sum_probs=132.3

Q ss_pred             CcEEEEEcCCCCeEEEEE----ecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          360 SPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~g----s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+..                   +..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence            344456799999865553    2356799999999988764                   2222  33479999999999


Q ss_pred             EEEe----------CCCeEEEEEccCCceeeeeeeeecc----cCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCce
Q 001258          436 GVAY----------SRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  501 (1113)
Q Consensus       436 as~~----------~d~~i~iwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~  501 (1113)
                      ++.+          .|+.|++||..+++.+........+    ......++|+++++.++++..+.+..+.+|+..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8653          4789999999999877643221122    2234678999999975555667788999999999998


Q ss_pred             eeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEE
Q 001258          502 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  581 (1113)
Q Consensus       502 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  581 (1113)
                      +..+..+..... .   +... ...+..+.||...++..                                         
T Consensus       142 ~~~~~~~~~~~~-~---~~~~-~~~~~~~~dg~~~~v~~-----------------------------------------  175 (355)
T d2bbkh_         142 KRMLDVPDCYHI-F---PTAP-DTFFMHCRDGSLAKVAF-----------------------------------------  175 (355)
T ss_dssp             EEEEECCSEEEE-E---EEET-TEEEEEETTSCEEEEEC-----------------------------------------
T ss_pred             eeEEecCCcceE-e---ecCC-cceEEEcCCCCEEEEEe-----------------------------------------
Confidence            887764432211 1   1111 12333334443333322                                         


Q ss_pred             ecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCC
Q 001258          582 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  650 (1113)
Q Consensus       582 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  650 (1113)
                                 ..++.+.+++......       .+...+....+.+++..++.++.++.+++|+...+
T Consensus       176 -----------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  226 (355)
T d2bbkh_         176 -----------GTEGTPEITHTEVFHP-------EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  226 (355)
T ss_dssp             -----------CSSSCCEEEECCCCSC-------TTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             -----------cCCCeEEEEecccccc-------eecceeeeccccCCCCeEEEecCCCeEEEEecCCC
Confidence                       2233344444433221       11234566778888888899999999999998766

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.78  E-value=3.4e-16  Score=174.23  Aligned_cols=303  Identities=8%  Similarity=-0.064  Sum_probs=201.9

Q ss_pred             EEecCCCCEEEEE-----ecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC----------CCcEEE
Q 001258          580 VQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DNGIKI  644 (1113)
Q Consensus       580 ~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~i  644 (1113)
                      ++++|+++.+++.     +..+.|.+||..+++.+..+..+.    ...++|+|||++|++++.          ++.|.+
T Consensus        26 ~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v  101 (373)
T d2madh_          26 EAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEV  101 (373)
T ss_pred             cccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccceEEEE
Confidence            3344444445443     245679999999999999886442    347999999999998754          567888


Q ss_pred             EEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCC
Q 001258          645 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  724 (1113)
Q Consensus       645 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  724 (1113)
                      ||..++ +....+..+.....                                                    .      
T Consensus       102 ~D~~t~-~~~~~~~~~~~~~~----------------------------------------------------~------  122 (373)
T d2madh_         102 FDPVTF-LPIADIELPDAPRF----------------------------------------------------D------  122 (373)
T ss_pred             EECCCC-cEEEEEecCCccee----------------------------------------------------E------
Confidence            988877 33333322111000                                                    0      


Q ss_pred             ceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec--CCeEEEEEccccccCCCCceeeeecCeecCC
Q 001258          725 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQP  802 (1113)
Q Consensus       725 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~  802 (1113)
                                               .......+.|+++++.++....  ++.+.+|+..                     
T Consensus       123 -------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~---------------------  156 (373)
T d2madh_         123 -------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQG---------------------  156 (373)
T ss_pred             -------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeecc---------------------
Confidence                                     0011235678888887665543  3455555443                     


Q ss_pred             CCccccccccCCCCCCCCccEEEEecCCCEEEE-Ee-CCeEEEEECCCCceeeeecCC------CCCeeEEEEecCCCcE
Q 001258          803 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS-AS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNI  874 (1113)
Q Consensus       803 ~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~-~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~  874 (1113)
                       .+....       +...+.++.++|+|+.+++ .+ |+++.+|+...+........+      ......+.+++ ++ .
T Consensus       157 -~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~  226 (373)
T d2madh_         157 -GSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-SG-R  226 (373)
T ss_pred             -CCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-Cc-e
Confidence             333222       3445678999999987654 44 899999999988776654322      12234455555 45 4


Q ss_pred             EEEEecCCcEEEEEccccee--eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCC
Q 001258          875 IAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  952 (1113)
Q Consensus       875 la~g~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  952 (1113)
                      ++..+.++.+++|+..++..  ...+..+........+.|.+...+..+.|+....+-                      
T Consensus       227 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------------------  284 (373)
T d2madh_         227 IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL----------------------  284 (373)
T ss_pred             EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe----------------------
Confidence            45566789999999887653  344555666677777777777777776666443332                      


Q ss_pred             CCCceEEEccCCcEEEE-EcCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCE--EEEEeCCCcEEEEecCCCce
Q 001258          953 QSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAANLKL 1029 (1113)
Q Consensus       953 ~~i~~~~~spdg~~l~~-~~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~--l~s~~~Dg~v~vwd~~~~~~ 1029 (1113)
                              ..++..++. ..++.+.+||..+++.+..+.   +...+.+++|+|||+.  +++++.|++|+|||+.+++.
T Consensus       285 --------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~  353 (373)
T d2madh_         285 --------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQ  353 (373)
T ss_pred             --------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCE
Confidence                    222333344 577889999999999988764   4667899999999984  46788999999999999999


Q ss_pred             eeecC
Q 001258         1030 RCRIN 1034 (1113)
Q Consensus      1030 ~~~~~ 1034 (1113)
                      +..+.
T Consensus       354 ~~~~~  358 (373)
T d2madh_         354 DQSTV  358 (373)
T ss_pred             EEEEC
Confidence            98886

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=2.9e-16  Score=173.31  Aligned_cols=205  Identities=12%  Similarity=0.057  Sum_probs=137.4

Q ss_pred             ccEEEEecCCCEEEEEe---CCeEEEEECCCCceeeeecCCCC-------CeeEEEEecCCCcEEEE-EecCCcEEEEEc
Q 001258          821 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAI-GMDDSSIQIYNV  889 (1113)
Q Consensus       821 v~~l~~s~~~~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~d~~~la~-g~~dg~v~iwd~  889 (1113)
                      ...++|++++++++++.   +..+.+|+..+++.+..+..+..       ....+.+++ +++.++. ...++.+.+++.
T Consensus       108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-dg~~~~v~~~~~~~~~~~~~  186 (355)
T d2bbkh_         108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCR-DGSLAKVAFGTEGTPEITHT  186 (355)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET-TSCEEEEECCSSSCCEEEEC
T ss_pred             CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcC-CCCEEEEEecCCCeEEEEec
Confidence            45578888888877765   46788899888887777654332       223345555 4433333 233344444444


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCC----CCCCCCCCceEEEccCCc
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQI  965 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~spdg~  965 (1113)
                      ....     ..+...+....+++++..++.++.++.+++|++..++............    ..........+++++++.
T Consensus       187 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~  261 (355)
T d2bbkh_         187 EVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALD  261 (355)
T ss_dssp             CCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTT
T ss_pred             cccc-----ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCC
Confidence            3322     2344456667888889999999999999999998865422111100000    000002346789999999


Q ss_pred             EEEEE-cC----------CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCC--EEEEEeCCCcEEEEecCCCceeee
Q 001258          966 HFLVV-HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCR 1032 (1113)
Q Consensus       966 ~l~~~-~d----------~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~s~~~Dg~v~vwd~~~~~~~~~ 1032 (1113)
                      .++.. .+          ..|.+||..+++.+..+..   ...+.+++|+|||+  ++++++.|+.|+|||+.+++.+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~  338 (355)
T d2bbkh_         262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  338 (355)
T ss_dssp             EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             eEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC---CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEE
Confidence            88873 22          3699999999998887753   45689999999998  345677899999999999999988


Q ss_pred             cC
Q 001258         1033 IN 1034 (1113)
Q Consensus      1033 ~~ 1034 (1113)
                      +.
T Consensus       339 i~  340 (355)
T d2bbkh_         339 VN  340 (355)
T ss_dssp             EC
T ss_pred             Ee
Confidence            76

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=4.6e-16  Score=169.93  Aligned_cols=286  Identities=10%  Similarity=0.105  Sum_probs=190.0

Q ss_pred             ceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCCceeee
Q 001258          716 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATAS  794 (1113)
Q Consensus       716 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~  794 (1113)
                      ..++++.+++|++|++.........+.+     .+...+..++|+|||++|++++. ++.|++|++.......       
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~-----~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~-------   73 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------   73 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEE-----cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE-------
Confidence            3577788999999999864332222222     26678999999999999966655 7999999876422110       


Q ss_pred             ecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeee--ecCCCCCeeEEEEecC
Q 001258          795 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQ  870 (1113)
Q Consensus       795 ~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~  870 (1113)
                                 ....  .  ..+...+..++|+|||++|++++  ++.|.+|+.........  ...+...+.++.++| 
T Consensus        74 -----------~~~~--~--~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-  137 (333)
T d1ri6a_          74 -----------TFAA--E--SALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-  137 (333)
T ss_dssp             -----------EEEE--E--EECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-
T ss_pred             -----------EEee--e--cccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-
Confidence                       0000  0  01445678899999999999987  67899999876554333  345666788999999 


Q ss_pred             CCcEEEEEe-cCCcEEEEEcccceeee------eecccccCeEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccccc--
Q 001258          871 DNNIIAIGM-DDSSIQIYNVRVDEVKS------KLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNR--  940 (1113)
Q Consensus       871 d~~~la~g~-~dg~v~iwd~~~~~~~~------~l~~h~~~V~~l~~s~d~~~L~s~s-~D~~v~iwd~~~~~~~~~~--  940 (1113)
                      +++++++++ .+..|.+|+........      ....+......++|++++.+++... ..+...+|++.........  
T Consensus       138 d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  217 (333)
T d1ri6a_         138 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  217 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             cceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeee
Confidence            777777666 45579999987643221      1123445678899999998887655 5567788886553322111  


Q ss_pred             ccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeeccc-cCCCCCCeeEEEECCCCCEEEEEeC-C
Q 001258          941 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL-D 1016 (1113)
Q Consensus       941 ~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~-D 1016 (1113)
                      .................+++++|++++++.  .++.+.+|++.......... ...+...+..++|+|||++|++++. +
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~  297 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS  297 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTT
T ss_pred             eeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCC
Confidence            111111111112345678999999988874  56789999887654433222 1123456789999999999877764 5


Q ss_pred             CcEEEEec--CCCce
Q 001258         1017 ATVCVFSA--ANLKL 1029 (1113)
Q Consensus      1017 g~v~vwd~--~~~~~ 1029 (1113)
                      +.|+||++  .+|++
T Consensus       298 ~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         298 HHISVYEIVGEQGLL  312 (333)
T ss_dssp             CEEEEEEEETTTTEE
T ss_pred             CeEEEEEEECCCCcE
Confidence            88999954  56655

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=7.4e-15  Score=160.10  Aligned_cols=292  Identities=10%  Similarity=0.132  Sum_probs=185.3

Q ss_pred             eeEEEEecCCCcEEEEeCCCCceeeEe--eccCcCEEEEeeeecCCceEEEE-EecCCcEEEEEcCCCCCeeeee---CC
Q 001258          479 QLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFS-TALDGKIKAWLYDNLGSRVDYE---AP  552 (1113)
Q Consensus       479 ~~~l~s~s~d~~i~iwd~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~---~~  552 (1113)
                      +.++++++.|++|++|++.+...+..+  ..|.+.+..++|+|  ||++|++ +..|+.|++|++..........   ..
T Consensus         4 ~~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~sp--DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~   81 (333)
T d1ri6a_           4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP--DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL   81 (333)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECT--TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred             eEEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeC--CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence            346788999999999999765444333  35888999999765  5677754 4558999999998755443221   11


Q ss_pred             CCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEe-cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCC
Q 001258          553 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC  631 (1113)
Q Consensus       553 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  631 (1113)
                      ...                     ...++|+|+|++|++++ .++.|.+|+..............+...+.++.++|+++
T Consensus        82 ~~~---------------------p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~  140 (333)
T d1ri6a_          82 PGS---------------------LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR  140 (333)
T ss_dssp             SSC---------------------CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS
T ss_pred             CCC---------------------ceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecce
Confidence            222                     33455555556777776 57789999988776655554444455688999999999


Q ss_pred             EEEEEECC-CcEEEEEcCCCccceeccccccccccccCCCCCCCcccchhhhhhhhcccccccccccccccCCCCCCccc
Q 001258          632 LLAVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  710 (1113)
Q Consensus       632 ~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (1113)
                      ++++++.+ ..|.+|+..+............                                                 
T Consensus       141 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------------------------------------------------  171 (333)
T d1ri6a_         141 TLWVPALKQDRICLFTVSDDGHLVAQDPAEV-------------------------------------------------  171 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEEE-------------------------------------------------
T ss_pred             eeeccccccceeeEEEeccCCcceeeeceee-------------------------------------------------
Confidence            98888754 4688888765522111110000                                                 


Q ss_pred             cCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEEEEEeCCCceEEEeec-CCeEEEEEccccccCCCC
Q 001258          711 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSG  789 (1113)
Q Consensus       711 ~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~  789 (1113)
                                         .                 .........++|++++..++.... .+...+|++........ 
T Consensus       172 -------------------~-----------------~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  214 (333)
T d1ri6a_         172 -------------------T-----------------TVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIE-  214 (333)
T ss_dssp             -------------------E-----------------CSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCE-
T ss_pred             -------------------e-----------------eecCCCccEEEEeccceeEEeeccccCceEEEeeccccccee-
Confidence                               0                 002334577899999988766654 46777877643211100 


Q ss_pred             ceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeee---cCCCCCeeE
Q 001258          790 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATF---MPPPPAATF  864 (1113)
Q Consensus       790 ~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~---~~~~~~i~~  864 (1113)
                         ...  .+...         ............+++++++++++...  ++.+.+|++.........   ......+..
T Consensus       215 ---~~~--~~~~~---------~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  280 (333)
T d1ri6a_         215 ---CVQ--TLDMM---------PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRG  280 (333)
T ss_dssp             ---EEE--EEECS---------CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCC
T ss_pred             ---eee--eeeee---------ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeE
Confidence               000  00000         01111344567789999999888776  689999998765443332   223456788


Q ss_pred             EEEecCCCcEEEEEe-cCCcEEEEEc--cccee
Q 001258          865 LAFHPQDNNIIAIGM-DDSSIQIYNV--RVDEV  894 (1113)
Q Consensus       865 l~~s~~d~~~la~g~-~dg~v~iwd~--~~~~~  894 (1113)
                      ++|+| ||++|++++ .++.|++|++  .+|++
T Consensus       281 ~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         281 FNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            99999 888776665 5689999955  55654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=1.8e-13  Score=156.99  Aligned_cols=152  Identities=15%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC--
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--  440 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--  440 (1113)
                      .+.|.+|+++ +.  ..++.|.+||+.+++....              +....+..|...|.++.|||||++|+.++.  
T Consensus        21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            4679999985 54  4588999999999986542              112246778889999999999999998854  


Q ss_pred             -------CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccC----
Q 001258          441 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE----  509 (1113)
Q Consensus       441 -------d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~----  509 (1113)
                             ++.+.|||+.+++..    .+..|...+..+.|||||+  .+|.. .++.+.+|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   567899999998743    4778999999999999999  45654 47789999999887665433221    


Q ss_pred             --------------cCEEEEeeeecCCceEEEEEecCCc-EEEEEc
Q 001258          510 --------------APVYSVCPHHKENIQFIFSTALDGK-IKAWLY  540 (1113)
Q Consensus       510 --------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~  540 (1113)
                                    +....+.|+  +||+.|+....|.. +..|.+
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~wS--PDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWWS--PNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEEC--TTSSEEEEEEEECTTCCEEEE
T ss_pred             cccccceeeeeeecCCccccEEC--CCCCccceeEecCCcCceEEE
Confidence                          122334454  56678887766543 544443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=1.5e-13  Score=151.84  Aligned_cols=241  Identities=10%  Similarity=0.004  Sum_probs=157.1

Q ss_pred             cEEEEecCCCEEEEEe-----------CCeEEEEECCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-cCC
Q 001258          822 PCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-DDS  882 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~d~~~la~g~-~dg  882 (1113)
                      ..++++|||++|++.+           |++|++||..+++.+..+..+..       ....++|+| ||++|+++. .++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCC
Confidence            3689999999998764           46799999999998877654322       234689999 888887765 579


Q ss_pred             cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEcc
Q 001258          883 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  962 (1113)
Q Consensus       883 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp  962 (1113)
                      .+.+||+.+++.+..+..+.....   +......++..+.||++.+|++............  .........+....+.+
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETT
T ss_pred             eEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec--ccccccccceeeccccc
Confidence            999999999998888776544321   1122345666677777777777654432211111  11111113445677778


Q ss_pred             CCcEEEEEcCCeEEEEeCCccceeeccccCCC----------CCCeeEEEECCCCCEEEEEeCC---------CcEEEEe
Q 001258          963 DQIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD---------ATVCVFS 1023 (1113)
Q Consensus       963 dg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h----------~~~v~~l~~s~dg~~l~s~~~D---------g~v~vwd 1023 (1113)
                      ++..+.. ..+.+.+++..............+          ......+++++++..++....+         ..|.+||
T Consensus       222 ~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         222 PGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             CcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            8765543 345566666554443322111111          1223568899999887765433         3599999


Q ss_pred             cCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC--EEEEEeCCCcEEEEeccCCC
Q 001258         1024 AANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN--EFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1024 ~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~--~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ..+++.+..+.        +...+.  .++|+| ||+  +++++..|++|++||..+++
T Consensus       301 ~~t~~~~~~~~--------~~~~~~--~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         301 ASVGQTSGPIS--------NGHDSD--AIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSSCCEEECCE--------EEEEEC--EEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCCcEeEEec--------CCCcee--EEEECC-CCCEEEEEEeCCCCeEEEEECCCCC
Confidence            99999887764        122333  488999 665  35677789999999999998

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.49  E-value=7.7e-13  Score=146.04  Aligned_cols=268  Identities=11%  Similarity=0.000  Sum_probs=174.9

Q ss_pred             CCCCcEEEEEcCCCCeEEEE--EecCCc--EEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCC
Q 001258          357 QGSSPMSMDFHPVQQTLLLV--GTNVGD--IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  432 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~--gs~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  432 (1113)
                      +.+....++.+++|+...++  ...+|+  |.+||..+++.+..                   ..++...  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence            55666777888999864333  334444  66779999987763                   2233323  58999999


Q ss_pred             CeEEEEe----------CCCeEEEEEccCCceeeeeeeeeccc-------CCeeEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001258          433 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV-------GGVNDIAFSHPNKQLCVITCGDDKTIKVWD  495 (1113)
Q Consensus       433 ~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~-------~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd  495 (1113)
                      ++|++.+          .|+.|.+||..+++.+..   +..+.       .....++|+|||++ ++++...++.+.+||
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d  152 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence            9999864          367899999999887653   33222       23457999999996 334445689999999


Q ss_pred             CCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeee------CCCCceEEEEEccCCCeEE
Q 001258          496 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE------APGRWCTTMAYSADGTRTY  569 (1113)
Q Consensus       496 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~v~~~~~s~~~~~~~  569 (1113)
                      +.+++.+..+..+.....    .+... ..++..+.||.+.+|++..........      .+...+....+.+++..++
T Consensus       153 ~~~~~~~~~~~~~~~~~~----~~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         153 VPGASDDQLTKSASCFHI----HPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             ETTTEEEEEEECSSCCCC----EEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             CCCCcEeEEeeccCcceE----ccCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            999999988876554321    12222 366777888888888876654433221      1111222333333333111


Q ss_pred             ec-------------------------------cccCceeEEEecCCCCEEEEEecC---------CcEEEEECCCCceE
Q 001258          570 QG-------------------------------FRKRSLGVVQFDTTKNRFLAAGDD---------FSIKFWDMDSVQLL  609 (1113)
Q Consensus       570 ~~-------------------------------~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~  609 (1113)
                      ..                               ........+++++++..++....+         ..|.+||..+++.+
T Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence            10                               001112346788888877665322         35899999999988


Q ss_pred             EEEccCCCCCCcCeEEECCCCC-E-EEEEECCCcEEEEEcCCCccceeccc
Q 001258          610 TSIDADGGLPASPRIRFNKDGC-L-LAVSTNDNGIKILATSDGIRLLRTFE  658 (1113)
Q Consensus       610 ~~~~~~~~~~~v~~~~~s~~~~-~-l~~~~~dg~i~iwd~~~~~~~~~~~~  658 (1113)
                      ..+...   ..+.+++|+|||+ + ++++..++.|++||..++ +.++.+.
T Consensus       308 ~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         308 GPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             ECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             EEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence            777543   2478899999997 3 456667899999999999 5555554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=5.7e-12  Score=144.13  Aligned_cols=375  Identities=10%  Similarity=0.043  Sum_probs=202.5

Q ss_pred             eEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeec-----cCcCEEEEeeeecCCceEEEEEec---------CCc
Q 001258          469 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----HEAPVYSVCPHHKENIQFIFSTAL---------DGK  534 (1113)
Q Consensus       469 ~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~~~---------dg~  534 (1113)
                      ..+.|.++++  ++..  .|+.+.+||+.+++....+..     |...|.++.|+  +||++|+.++.         ++.
T Consensus        20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S--pDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS--PDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC--TTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEEC--CCCCEEEEEECCcceeeeccCce
Confidence            4688999997  4543  478899999999988765543     45778888876  56688887743         567


Q ss_pred             EEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEcc
Q 001258          535 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  614 (1113)
Q Consensus       535 i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  614 (1113)
                      +.+||+.+++ ...+..+...+..+.|||||+                     .++. ..++.+++|+..+++.......
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~---------------------~ia~-~~~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH---------------------KLAY-VWNNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTT---------------------CEEE-EETTEEEEESSTTSCCEECCSC
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcc---------------------eeeE-eecccceEEECCCCceeeeeec
Confidence            8999998754 445566666777777777776                     4554 4577899999988876654322


Q ss_pred             CC----------------CCCCcCeEEECCCCCEEEEEECCCc-EEEEEcCCCccceeccccccccccccCCCCCCCccc
Q 001258          615 DG----------------GLPASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  677 (1113)
Q Consensus       615 ~~----------------~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1113)
                      ..                .......+.|||||+.|+....|.+ +..|.+........ ........             
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~-~~~~~~~~-------------  216 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESL-QYPKTVRV-------------  216 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTC-SSCEEEEE-------------
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCC-CCCeeeee-------------
Confidence            11                1123456889999999999876544 55554321100000 00000000             


Q ss_pred             chhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccC--c--ccccCc
Q 001258          678 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP--E--NLRATK  753 (1113)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~--~--~~~~~~  753 (1113)
                                                         ..........+..+.+|++...............  .  ......
T Consensus       217 -----------------------------------~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (470)
T d2bgra1         217 -----------------------------------PYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY  261 (470)
T ss_dssp             -----------------------------------ECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEE
T ss_pred             -----------------------------------ccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCce
Confidence                                               0000001112245677777765433322211111  0  123345


Q ss_pred             eEEEEEeCCCceEEEeec---C-CeEEEEEccccccCCCCceeeee-cCeecCCCCccccccccCCCCCCCCccEEEEec
Q 001258          754 ISRLIFTNSGNAILALAS---N-AIHLLWKWQRTERNSSGKATASV-APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  828 (1113)
Q Consensus       754 i~~~~~s~~~~~l~~~~~---d-g~i~vw~~~~~~~~~~~~~~~~~-~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~  828 (1113)
                      +..+.+.+++..++....   + ..+.++++.....    ...... ....+....+-+     .  .+...  ...+.+
T Consensus       262 ~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg----~~~~~~~~~~~~~~~~~~i-----~--~~~~~--~~~~~~  328 (470)
T d2bgra1         262 LCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG----RWNCLVARQHIEMSTTGWV-----G--RFRPS--EPHFTL  328 (470)
T ss_dssp             EEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT----EEEECGGGCEEEECSSSCS-----S--SSSCC--CCEECT
T ss_pred             EEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCC----cEEEEEEEeeeeeecccee-----e--cccCC--Cceeee
Confidence            678888888876554322   1 2344454432110    000000 000001111100     0  01111  223444


Q ss_pred             CCC--EEEEEe-CCe--EEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCC----cEEEE--Ecccceeee-
Q 001258          829 NDS--YVMSAS-GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIY--NVRVDEVKS-  896 (1113)
Q Consensus       829 ~~~--~l~~~s-dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~v~iw--d~~~~~~~~-  896 (1113)
                      ++.  ++..+. +|.  |.+|+...+. ...+..+...|..+ ++++++.+++++..++    .-+||  ++..+.... 
T Consensus       329 ~~~~~~~~~s~~dg~~~ly~~~~~g~~-~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~  406 (470)
T d2bgra1         329 DGNSFYKIISNEEGYRHICYFQIDKKD-CTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTC  406 (470)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSC-CEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEE
T ss_pred             cCCCcEEEEeccCcCceeEEEeccCCc-eeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeE
Confidence            443  334443 554  5666665444 44444455567766 4442444445554332    22444  444333332 


Q ss_pred             ---eecccccCeEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCcc
Q 001258          897 ---KLKGHSKRITGLAFSHALNVLVS---SGADSQLCVWSSDGWEK  936 (1113)
Q Consensus       897 ---~l~~h~~~V~~l~~s~d~~~L~s---~s~D~~v~iwd~~~~~~  936 (1113)
                         .+.+|...+.+++|||||++++.   +...-.+.+|+..+++.
T Consensus       407 lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l~~~~~g~~  452 (470)
T d2bgra1         407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKG  452 (470)
T ss_dssp             SSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEE
T ss_pred             ecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEEEECCCCCE
Confidence               34578889999999999999773   33344588888887654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.45  E-value=1.1e-13  Score=150.16  Aligned_cols=251  Identities=11%  Similarity=-0.030  Sum_probs=154.3

Q ss_pred             CCCeEEEEEecCCcEEEEecCCcceeEeeeee------eeccCCCCccc-----ccccccCCCcceEEEEEcCCCCeEEE
Q 001258          369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK------VWDLGACSMPL-----QAALVKDPGVSVNRVIWSPDGSLFGV  437 (1113)
Q Consensus       369 dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~h~~~V~~l~~spdg~~las  437 (1113)
                      |+-|.+++|+.+|+|.||++.+++.+.+..+-      .|-....+...     .......|.....+..++|||++|.+
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV   88 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFI   88 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEE
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEE
Confidence            34457888999999999999999888753321      11100000000     00012235556777778999999977


Q ss_pred             Ee-CCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCC-----------------cEEEEeCCCC
Q 001258          438 AY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK-----------------TIKVWDATNG  499 (1113)
Q Consensus       438 ~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~-----------------~i~iwd~~~~  499 (1113)
                      .. .++.|.++|+.+++..+.+ + -.+...+..++|+|+|+..+++..+.+.                 .+..+|..+.
T Consensus        89 ~d~~~~rVavIDl~t~k~~~ii-~-iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~  166 (441)
T d1qnia2          89 NDKANTRVARIRLDIMKTDKIT-H-IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETM  166 (441)
T ss_dssp             EETTTTEEEEEETTTTEEEEEE-E-CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTC
T ss_pred             EcCCCCEEEEEECCCCcEeeEE-e-cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccc
Confidence            64 6789999999998866522 1 2466789999999999976666555432                 2355787777


Q ss_pred             ceeeEeeccCcCEEEEeeeecCCceEEEEEecCC-cEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCcee
Q 001258          500 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  578 (1113)
Q Consensus       500 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  578 (1113)
                      +....+.... ....+.++  ++|.++++.+.+. .+..++..+......+... .....+.                  
T Consensus       167 ~v~~qI~v~~-~p~~v~~s--pdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~-n~p~~~~------------------  224 (441)
T d1qnia2         167 DVAWQVIVDG-NLDNTDAD--YTGKYATSTCYNSERAVDLAGTMRNDRDWVVVF-NVERIAA------------------  224 (441)
T ss_dssp             SEEEEEEESS-CCCCEEEC--SSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEE-EHHHHHH------------------
T ss_pred             eeeEEEecCC-CccceEEC--CCCCEEEEEecCCCceEEEeccCcceEEEEEeC-CccceEE------------------
Confidence            7776665433 34555654  5567777776543 2333333222221111000 0011122                  


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEE-EECCCcEEEEEcCCC
Q 001258          579 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNGIKILATSDG  650 (1113)
Q Consensus       579 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~  650 (1113)
                         +.++|+++.. +.++.+.+++....+.+..+.....   ...+.++|||+++++ +..++++.+||+.+.
T Consensus       225 ---~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~  290 (441)
T d1qnia2         225 ---AVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPTVSVIAIDKL  290 (441)
T ss_dssp             ---HHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred             ---EecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence               3344444433 4567788888777777777765433   578999999998755 567899999998653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.41  E-value=6.8e-12  Score=136.07  Aligned_cols=256  Identities=14%  Similarity=0.108  Sum_probs=169.7

Q ss_pred             CCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCc--EEEEEecCC---------
Q 001258          817 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNN--IIAIGMDDS---------  882 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~--~la~g~~dg---------  882 (1113)
                      |.........+|||++|++..  ++.|.++|+.++++...+. .+...+..++|+| +++  +++..+++.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence            444455556689999998886  6899999999998877664 3566799999999 666  444444332         


Q ss_pred             --------cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC------------------------------
Q 001258          883 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------  924 (1113)
Q Consensus       883 --------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~------------------------------  924 (1113)
                              .+..+|..+.+...++... +....+.|+|||+++++++.+.                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    2345787777776666543 3578899999999999887542                              


Q ss_pred             -----------cEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeec---
Q 001258          925 -----------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQ---  988 (1113)
Q Consensus       925 -----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~---  988 (1113)
                                 .+.+++....+    ....++.+     .....+.++|||++++++  .++++.|||+.+.+....   
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~----v~~~IPvg-----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESE----FTRYIPVP-----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCS----SEEEECCB-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             CCCEEEeCCCCcEEEEcccCCc----eEEEEeCC-----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                       22222222211    11122222     235789999999999884  788999999876442100   


Q ss_pred             -----cccC-CCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCC----------CceeeecCCCcccCCCcccCccceEE
Q 001258          989 -----WVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSNVHPLVI 1052 (1113)
Q Consensus       989 -----~~~~-~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~----------~~~~~~~~~~~~~~~gh~~~v~~i~~ 1052 (1113)
                           +... ...-.....+|+++|..+.+.+.|..|..|++..          ...+.++..+ |.+ ||...+.+  .
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-y~~-GH~~~~~~--~  374 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-YQP-GHNHASLT--E  374 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCE-EEEEETTT--T
T ss_pred             CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-cCC-CCCccccc--c
Confidence                 0000 0122345568999999889999999999999842          1233333333 333 88777775  7


Q ss_pred             EEeCCCCCEEEEE---eCCC----------cEEEEeccCCCccccCCCC
Q 001258         1053 AAHPQEPNEFALG---LSDG----------GVHVFEPLESEGKWGVPPP 1088 (1113)
Q Consensus      1053 ~~~p~d~~~l~s~---~~Dg----------~v~vW~~~~~~~~~~~~~~ 1088 (1113)
                      +++| ||++|+++   +.|.          +-.+.||+..++++-...|
T Consensus       375 t~~p-dGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~~~  422 (441)
T d1qnia2         375 SRDA-DGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHDGP  422 (441)
T ss_dssp             STTC-CCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred             ccCC-CCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEecCC
Confidence            7888 89999999   5554          4567888866655544333

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=2.1e-09  Score=116.94  Aligned_cols=254  Identities=9%  Similarity=0.054  Sum_probs=149.7

Q ss_pred             CCCCccEEEEecCCCEEEEEeCCeEEEEECCCCceeeee--cCCCCCeeEEEEecCCCcEE--EEEe-cCCcEEEEEccc
Q 001258          817 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNII--AIGM-DDSSIQIYNVRV  891 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~~~~~~~--~~~~~~i~~l~~s~~d~~~l--a~g~-~dg~v~iwd~~~  891 (1113)
                      ....+.-|++++++++|.++..+.+..|.+.....+...  .........+++++ +++.+  +++. ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            345567899999999999988888888877642222211  11223456778888 66633  3222 245565554422


Q ss_pred             -c------------ee---e-eeecccccCeEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcccc-ccc-cccCCCCCCC
Q 001258          892 -D------------EV---K-SKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQK-NRF-LQIPTGRTPT  951 (1113)
Q Consensus       892 -~------------~~---~-~~l~~h~~~V~~l~~s~d~~~L~s~s~-D~~v~iwd~~~~~~~~-~~~-~~~~~~~~~~  951 (1113)
                       +            +.   . ..-+.....+.++.|+|||++|++++. ...|.+|++....... ... .....+    
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g----  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG----  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT----
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCC----
Confidence             1            00   0 001112234789999999999888864 4568888765432211 111 111112    


Q ss_pred             CCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeeccc-----------------cCCCCCCeeEEEECCCCCEEEE
Q 001258          952 AQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-----------------PRESSAPITHATFSCDSQLVYA 1012 (1113)
Q Consensus       952 ~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~~~-----------------~~~h~~~v~~l~~s~dg~~l~s 1012 (1113)
                       .....++|+|+|+++.+.  .+++|.+|++...+......                 ...+......+.++|||++|++
T Consensus       193 -~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyv  271 (365)
T d1jofa_         193 -DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFA  271 (365)
T ss_dssp             -CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEE
T ss_pred             -CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEE
Confidence             356899999999998874  56889999987654321110                 0011234567999999999988


Q ss_pred             EeC------CCcEEEEecCCCceeeecC-CCcccCCCcccCccceEEEEeCCCCCEEEEE-eCCCcEEEEeccCCC
Q 001258         1013 CFL------DATVCVFSAANLKLRCRIN-PSAYLPAGVSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1013 ~~~------Dg~v~vwd~~~~~~~~~~~-~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~-~~Dg~v~vW~~~~~~ 1080 (1113)
                      +..      .+.|..|++.....+.... ....    ......+..++++|.+|++|+++ ..+++|.+|++....
T Consensus       272 snr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~----~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         272 SSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT----PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC----SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EcccCCCccceEEEEEEecCCCceeeEeEeeEE----EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            753      2337778876432222111 0000    11112233488888778876555 567999999986544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.09  E-value=2.4e-08  Score=105.40  Aligned_cols=246  Identities=13%  Similarity=0.081  Sum_probs=160.4

Q ss_pred             CCcceeEeccCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEE
Q 001258          347 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  426 (1113)
Q Consensus       347 ~~~~~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  426 (1113)
                      .+.++...+.-...+..++++|||+ |+++...+++|..|+.......                     +....+.+.++
T Consensus        16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl   73 (302)
T d2p4oa1          16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL   73 (302)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred             CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence            3555666666556789999999999 6888888999988886543221                     22344579999


Q ss_pred             EEcCCCCeEEEEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee
Q 001258          427 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       427 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~  506 (1113)
                      +|++||+++++...++.+.+|+............-.......+.+++.+++.  ++++.+.++.+..+|...+.......
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~  151 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE  151 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence            9999999999988888888888765432221111223455689999999998  78888888899888887765332221


Q ss_pred             c----------cCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          507 G----------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       507 ~----------h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                      .          .......+.+  .. +.++++.+..+.|..++...........     ..              .....
T Consensus       152 ~~~~~~~~~~~~~~~~ngi~~--~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~~--------------~~~~~  209 (302)
T d2p4oa1         152 HPMLARSNSESVFPAANGLKR--FG-NFLYVSNTEKMLLLRIPVDSTDKPGEPE-----IF--------------VEQTN  209 (302)
T ss_dssp             CGGGSCSSTTCCSCSEEEEEE--ET-TEEEEEETTTTEEEEEEBCTTSCBCCCE-----EE--------------EESCC
T ss_pred             CCccceeeccCcccccccccc--cC-CceeeecCCCCeEEeccccccccccccc-----cc--------------cCCCC
Confidence            1          1123344443  33 2566777778888888876543221100     00              00012


Q ss_pred             eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEE---CCCCCEEEEEECC
Q 001258          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND  639 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  639 (1113)
                      ...++++++|+.+++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            2346777777777777788999999875 444444433333345678999   6788888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.01  E-value=3.4e-07  Score=98.96  Aligned_cols=158  Identities=13%  Similarity=0.172  Sum_probs=100.4

Q ss_pred             CccEEEEecCCCEEEEEe--CCeEEEEECCCCceee---ee--cCCCCCeeEEEEecCCCcEEEE-EecCCcEEEEEccc
Q 001258          820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA---TF--MPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRV  891 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~---~~--~~~~~~i~~l~~s~~d~~~la~-g~~dg~v~iwd~~~  891 (1113)
                      .+.+++|+|||++++++.  .+.|.+|+......+.   ..  .........++|+| +++++.+ ...+++|.+|++..
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~~  224 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEecC
Confidence            467899999999888887  4678888765322211   11  12345688999999 7776654 45678999999876


Q ss_pred             ceeeee-----ec--------------ccccCeEEEEEcCCCCEEEEEeC-C-----CcEEEEeCCCCcccccc-cc-cc
Q 001258          892 DEVKSK-----LK--------------GHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNR-FL-QI  944 (1113)
Q Consensus       892 ~~~~~~-----l~--------------~h~~~V~~l~~s~d~~~L~s~s~-D-----~~v~iwd~~~~~~~~~~-~~-~~  944 (1113)
                      ++....     +.              .+......+.++|||++|+++.. +     ..|..|++......... .. ..
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  304 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence            532211     10              12223567899999999987743 2     23677776553221111 11 11


Q ss_pred             -CCCCCCCCCCCceEEEcc-CCcEEEEE--cCCeEEEEeCCcc
Q 001258          945 -PTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKL  983 (1113)
Q Consensus       945 -~~~~~~~~~~i~~~~~sp-dg~~l~~~--~d~~v~v~d~~~~  983 (1113)
                       ..+     .....++++| +|++|+++  .++.|.+|+++..
T Consensus       305 ~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         305 PTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             112     2357899998 89988885  6688999987543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.98  E-value=6.5e-08  Score=101.93  Aligned_cols=237  Identities=9%  Similarity=0.008  Sum_probs=149.9

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee-ee
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KS  896 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~-~~  896 (1113)
                      ..+..++++|||+++++.. +++|..|+....  ...+......+.+++|++ +|+++++...++.+..|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3578899999999888877 788988886543  233444567799999999 889999988888898888754321 11


Q ss_pred             ee--cccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccc--cCCCCCCCCCCCceEEEccCCcEEEE--E
Q 001258          897 KL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ--IPTGRTPTAQSDTRVQFHQDQIHFLV--V  970 (1113)
Q Consensus       897 ~l--~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~spdg~~l~~--~  970 (1113)
                      .+  .......+.+++.++++++++.+.++.+..++...+.........  ..............+.+  ++..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCceeeecC
Confidence            22  224456889999999999999888898888888765422110000  00011110112234444  4444544  4


Q ss_pred             cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccce
Q 001258          971 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPL 1050 (1113)
Q Consensus       971 ~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i 1050 (1113)
                      ..+.|..++..............+......++|++||.+.++...++.|..++... +......       ....-..+.
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~-------~~~~~~~pt  254 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ-------AEQGVIGST  254 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC-------GGGTCTTEE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe-------cCCCCCCce
Confidence            67788888876554333222111234567899999999888888899999998764 3322221       111222344


Q ss_pred             EEEEeC--CCCCEEEEEeCC
Q 001258         1051 VIAAHP--QEPNEFALGLSD 1068 (1113)
Q Consensus      1051 ~~~~~p--~d~~~l~s~~~D 1068 (1113)
                      .++|..  .|++.|..++..
T Consensus       255 ~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         255 AVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             EEEECCSTTTTTEEEEEECT
T ss_pred             EEEEcCCCCCCCEEEEECCC
Confidence            688842  267777665544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=3.1e-07  Score=95.20  Aligned_cols=243  Identities=14%  Similarity=0.162  Sum_probs=162.6

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCC-
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-  831 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~-  831 (1113)
                      ....++++++|+.+++-..+..|++|+.+       +..+...     . ..+       ...........+++..+.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~~-----~-~~~-------~~~~~~~~p~~~~~~~~~~~   83 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQF-----G-ECG-------KRDSQLLYPNRVAVVRNSGD   83 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEEE-----C-CBS-------SSTTCBSSEEEEEEETTTTE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEEe-----c-ccC-------CCcccccccccccccccccc
Confidence            45799999999977776777889988753       2111110     0 000       0001222345566665544 


Q ss_pred             EEEEEe--CCeEEEEECCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeee--cccccCeE
Q 001258          832 YVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRIT  906 (1113)
Q Consensus       832 ~l~~~s--dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l--~~h~~~V~  906 (1113)
                      ++++..  ++.|.+++.. +.....+. ........+++.+ +++++++....+.+.+++.. ++.+..+  ..+.....
T Consensus        84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          84 IIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             EEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEE
T ss_pred             cceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEeccC-Cceeecccccccccccc
Confidence            444443  4678888764 55555553 2345578899998 78888877777888888854 5666655  34667788


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccccccc-CCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCcc
Q 001258          907 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI-PTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL  983 (1113)
Q Consensus       907 ~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~  983 (1113)
                      .+++.++++.+++....+.|++||......     ... ..+..   .....+++.++|..+++-  .+..|.+|+. +|
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~-----~~~g~~g~~---~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G  231 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQYL-----RQIGGEGIT---NYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG  231 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCCEE-----EEESCTTTS---CSEEEEEECTTCCEEEEECSSSCEEEEECT-TS
T ss_pred             eeeeccceeEEeeeccccceeeeecCCcee-----eeecccccc---cCCcccccccCCeEEEEECCCCcEEEEECC-CC
Confidence            999999999999888899999999765221     111 11111   245789999999977773  3457999984 57


Q ss_pred             ceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCc
Q 001258          984 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1028 (1113)
Q Consensus       984 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~ 1028 (1113)
                      +.+..+...........+++.+||.+++ ++.++.|++|......
T Consensus       232 ~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         232 QLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             CEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            8777765544455789999999997555 5678999999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=4.6e-07  Score=93.88  Aligned_cols=241  Identities=11%  Similarity=0.121  Sum_probs=160.2

Q ss_pred             CccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCC------CCCeeEEEEecCCCcEEEEE-ecCCcEEEEEccc
Q 001258          820 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRV  891 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g-~~dg~v~iwd~~~  891 (1113)
                      ....++++++|+.+++-. ++.|++||.+ ++.+..+...      ......+++.++.+.++++. +.++.|.+++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            467899999999776655 6889999965 5666555321      12345667666345555443 34557777775 4


Q ss_pred             ceeeeeec-ccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE
Q 001258          892 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  970 (1113)
Q Consensus       892 ~~~~~~l~-~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~  970 (1113)
                      ++....+. .......++++.++|.++++....+.+.+++.+.... ..  ... ..+   ......+++.++|..+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~-~~--~g~-~~~---~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-HK--FGC-SKH---LEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EE--EEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCcee-ec--ccc-ccc---ccccceeeeccceeEEeee
Confidence            55555553 3456678999999999888888778888887654211 10  000 111   1356788999999877774


Q ss_pred             -cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeC-CCcEEEEecCCCceeeecCCCcccCCCcccCcc
Q 001258          971 -HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSNVH 1048 (1113)
Q Consensus       971 -~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~ 1048 (1113)
                       ..+.|.+||.. ++.+..+...++......|+++++|+++++-.. ++.|.+|+ .+|+.+..+...     ....  .
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~-----~~~~--~  245 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESK-----VKHA--Q  245 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEES-----SCCS--C
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCC-----CCCC--C
Confidence             67899999975 566666654455667899999999997776543 45799998 457777665411     1111  2


Q ss_pred             ceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1049 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1049 ~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +..++..| ||. |++++.++.|++|+.....
T Consensus       246 p~~vav~~-dG~-l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         246 CFDVALMD-DGS-VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEET-TTE-EEEEETTTEEEEEECSCCC
T ss_pred             EeEEEEeC-CCc-EEEEeCCCeEEEEEeeeec
Confidence            33467777 675 4556689999999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4.1e-07  Score=101.47  Aligned_cols=363  Identities=12%  Similarity=0.026  Sum_probs=191.0

Q ss_pred             EecCCcEEEEEcCCCCCeeeeeCCC---CceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE---------ecCC
Q 001258          529 TALDGKIKAWLYDNLGSRVDYEAPG---RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA---------GDDF  596 (1113)
Q Consensus       529 ~~~dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---------~~dg  596 (1113)
                      -..+|.|.+||+.+++....+....   ..+....+|||++                     +++..         +..+
T Consensus        33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~---------------------~vl~~~~~~~~~r~s~~~   91 (465)
T d1xfda1          33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDRE---------------------YALFSYNVEPIYQHSYTG   91 (465)
T ss_dssp             CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSS---------------------EEEEEESCCCCSSSCCCS
T ss_pred             EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCC---------------------eEEEEEcccceeEeeccc
Confidence            3457789999998876654443321   2344555666665                     44443         2357


Q ss_pred             cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCccceeccccccccccccCCCCCCCcc
Q 001258          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  676 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1113)
                      .+.++|+.++..............+....|||||+.+|... ++.|.+.+..++. ..+.......              
T Consensus        92 ~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~-~~~lt~~g~~--------------  155 (465)
T d1xfda1          92 YYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQ-AIRVVSTGKE--------------  155 (465)
T ss_dssp             EEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSC-CEEEECCCBT--------------
T ss_pred             cEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCc-eEEEecccCc--------------
Confidence            88999999887655433333334566789999999998876 4678777776552 2221110000              


Q ss_pred             cchhhhhhhhcccccccccccccccCCCCCCccccCCCcceeeccCCCceeeEeccCCCCCCcceecccCcccccCceEE
Q 001258          677 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  756 (1113)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~i~~  756 (1113)
                                                            ..+.-|-.     -|-...               .....-.+
T Consensus       156 --------------------------------------~~i~nG~~-----d~vyee---------------e~~~~~~a  177 (465)
T d1xfda1         156 --------------------------------------GVIYNGLS-----DWLYEE---------------EILKTHIA  177 (465)
T ss_dssp             --------------------------------------TTEEEEEC-----CHHHHH---------------TTSSSSEE
T ss_pred             --------------------------------------ceeecccc-----chhhhh---------------hhccccce
Confidence                                                  00000000     000000               00111246


Q ss_pred             EEEeCCCceEEEeecC-CeEEEEEccccc-----------cCCCCceeeeecCeecCCCCccccccccCCC---CCCCCc
Q 001258          757 LIFTNSGNAILALASN-AIHLLWKWQRTE-----------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---NPEEAV  821 (1113)
Q Consensus       757 ~~~s~~~~~l~~~~~d-g~i~vw~~~~~~-----------~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~---~~~~~v  821 (1113)
                      +.|||||+.|+....| ..+..+.+....           ....|.......+.++++.++..........   ....-+
T Consensus       178 ~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~  257 (465)
T d1xfda1         178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI  257 (465)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred             EEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcccccee
Confidence            7789999988876654 445555543211           1112222223345567776554322111110   122236


Q ss_pred             cEEEEecCCCEEEEEeC-----CeEEEEECCCCceeeeecCCC-C----CeeEEEEecCCCcEE-EE--EecCC--cEEE
Q 001258          822 PCFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPPP-P----AATFLAFHPQDNNII-AI--GMDDS--SIQI  886 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~sd-----g~i~vwd~~~~~~~~~~~~~~-~----~i~~l~~s~~d~~~l-a~--g~~dg--~v~i  886 (1113)
                      ..+.|++++++++...+     ..|.++|..++++...+.... .    .-....|++ +|+.+ ..  ...+|  .++.
T Consensus       258 ~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~  336 (465)
T d1xfda1         258 TMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYH  336 (465)
T ss_dssp             EEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEE
T ss_pred             eeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEE
Confidence            77899999987776642     248889999988765543221 1    123467888 55532 22  22333  3443


Q ss_pred             EEcc------cceeeeeecccccCeEEE-EEcCCCCEEE-EEeCCC--cEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258          887 YNVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  956 (1113)
Q Consensus       887 wd~~------~~~~~~~l~~h~~~V~~l-~~s~d~~~L~-s~s~D~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  956 (1113)
                      +++.      .++.+..+....-.|+.+ +|..+++.+. ++..++  .-.+|.+.-.......++......   .....
T Consensus       337 ~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~---~~~~~  413 (465)
T d1xfda1         337 ITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVE---NCTYF  413 (465)
T ss_dssp             EEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSS---SCCCC
T ss_pred             EEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCC---CCCEE
Confidence            3332      233444554445556665 6888877765 444432  234555432211111222211111   12467


Q ss_pred             eEEEccCCcEEEEEcC----CeEEEEeCCccceeeccc
Q 001258          957 RVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV  990 (1113)
Q Consensus       957 ~~~~spdg~~l~~~~d----~~v~v~d~~~~~~~~~~~  990 (1113)
                      .+.|||+|++++....    -.+.+++..+++.+..+.
T Consensus       414 ~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         414 SASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             EEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             EEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence            8999999999987322    256677777776666554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=2.7e-07  Score=94.52  Aligned_cols=240  Identities=10%  Similarity=0.038  Sum_probs=152.3

Q ss_pred             CCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccccee
Q 001258          817 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  894 (1113)
Q Consensus       817 ~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~  894 (1113)
                      +......++++++|+..++..  .+.+..++...................+++++ +++++++....+.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            455678999999999776654  47777777654433322222234567899999 788887777777777766555544


Q ss_pred             eeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcCC
Q 001258          895 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHET  973 (1113)
Q Consensus       895 ~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d~  973 (1113)
                      +....+ .....++++.++++++++-..+..+..++.......    .....+.    .....++++++|..+++ ..++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            433332 345789999999998887766777777776553211    1111111    24578999999997777 4677


Q ss_pred             eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEE
Q 001258          974 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIA 1053 (1113)
Q Consensus       974 ~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~ 1053 (1113)
                      .|..++...........  ........|+++++|.++++....+.|..++....... .+.      ..  +--.|..++
T Consensus       162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~~--~~~~P~~i~  230 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------FT--GLNTPLAVA  230 (260)
T ss_dssp             EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------CC--SCCCEEEEE
T ss_pred             cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------cC--CCCCeEEEE
Confidence            89999987554433221  23456789999999998888877888888887654322 111      01  111234578


Q ss_pred             EeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1054 AHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1054 ~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.+ +|+++++-..++.|+  .+.+-+
T Consensus       231 ~d~-~g~l~vad~~~~rI~--~i~~~~  254 (260)
T d1rwia_         231 VDS-DRTVYVADRGNDRVV--KLTSLE  254 (260)
T ss_dssp             ECT-TCCEEEEEGGGTEEE--EECCCG
T ss_pred             EeC-CCCEEEEECCCCEEE--EEeCCC
Confidence            887 678877766666554  444443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=5e-07  Score=93.26  Aligned_cols=228  Identities=12%  Similarity=0.036  Sum_probs=133.0

Q ss_pred             eeEeccCCCCcEEEEEcCCCCeEEEEEecCC--cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          351 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       351 ~~~~~~h~~~V~~~~~spdg~~ll~~gs~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      ...+..+...+..-+|||||++|+++....+  .+.+.+..++...                    .+..+.+.+....|
T Consensus        31 ~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~   90 (269)
T d2hqsa1          31 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR--------------------QVASFPRHNGAPAF   90 (269)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE--------------------EEECCSSCEEEEEE
T ss_pred             cEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee--------------------EEeeeeccccccee
Confidence            3455567788899999999998655554444  3555565555433                    24556778899999


Q ss_pred             cCCCCeEEEEeC-CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCceeeEe
Q 001258          429 SPDGSLFGVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF  505 (1113)
Q Consensus       429 spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~--i~iwd~~~~~~~~~~  505 (1113)
                      ||||+.++.... ++...++.........  .....+........+++++.. .+++...++.  |.+.++..+.. ..+
T Consensus        91 spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~~-~~~  166 (269)
T d2hqsa1          91 SPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGAP-QRI  166 (269)
T ss_dssp             CTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSCC-EEC
T ss_pred             cCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeecccccc-eee
Confidence            999999997654 3333333322221111  123344555667778888885 4555555554  45555554433 333


Q ss_pred             eccCcCEEEEeeeecCCceEEEEEe-cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecC
Q 001258          506 EGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  584 (1113)
Q Consensus       506 ~~h~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  584 (1113)
                      ..+........|++  ++..++..+ ..+...+|......................|+|||+.                 
T Consensus       167 ~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~-----------------  227 (269)
T d2hqsa1         167 TWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTM-----------------  227 (269)
T ss_dssp             CCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSE-----------------
T ss_pred             eccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCE-----------------
Confidence            44455555556654  445555544 4556666655544444444444445556677777764                 


Q ss_pred             CCCEEEEEe---cCCcEEEEECCCCceEEEEccCCCCCCcCeEEECC
Q 001258          585 TKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  628 (1113)
Q Consensus       585 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  628 (1113)
                          |+-.+   ....|++++++.+.... +...  ...+...+|+|
T Consensus       228 ----i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~--~g~~~~p~WSP  267 (269)
T d2hqsa1         228 ----VIYSSSQGMGSVLNLVSTDGRFKAR-LPAT--DGQVKFPAWSP  267 (269)
T ss_dssp             ----EEEEEEETTEEEEEEEETTSCCEEE-CCCS--SSEEEEEEECC
T ss_pred             ----EEEEEcCCCCcEEEEEECCCCCEEE-EeCC--CCcEEeEEeCC
Confidence                43322   34578899998766544 4333  22466788888

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.83  E-value=3.1e-07  Score=94.09  Aligned_cols=241  Identities=9%  Similarity=0.032  Sum_probs=143.8

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      +......++++++|..+++..+..+.|..++..+......                  ...+ ......++++++|++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~------------------~~~~-~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------------PFNG-LYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC------------------CCCS-CCSCCCEEECTTCCEEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe------------------ccCC-ccCceEEEEcCCCCEEE
Confidence            3456689999999995444445567777777654433221                  0111 12456789999999888


Q ss_pred             EEeCCCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEe
Q 001258          437 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  516 (1113)
Q Consensus       437 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~  516 (1113)
                      +....+.+++++-.++..+.   .. .......+|++.++++  ++++-.....+..++...................++
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence            87777777776655544332   22 2235678999999998  666666667777777554332221111223445667


Q ss_pred             eeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecCC
Q 001258          517 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  596 (1113)
Q Consensus       517 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  596 (1113)
                      +.  +++.++++...++.|..++.+.................                     ++++++++.+++....+
T Consensus       147 ~~--~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~g---------------------i~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         147 VD--NSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWG---------------------IAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             EC--TTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEE---------------------EEECTTCCEEEEETTTT
T ss_pred             ec--CCCCEeeeccccccccccccccceeeeeeccccCCCcc---------------------ceeeeeeeeeeeecCCC
Confidence            54  45567788888888999987653322211122222334                     44555555666666778


Q ss_pred             cEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEc
Q 001258          597 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  647 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  647 (1113)
                      .|..++..... ...+. .........++++++|+++++-..++.|+.++.
T Consensus       204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888765443 22222 222334578999999988887676776765543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.82  E-value=2.2e-06  Score=90.01  Aligned_cols=257  Identities=14%  Similarity=0.091  Sum_probs=152.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEec-------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEc
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTN-------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  429 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  429 (1113)
                      .-......+|.|+|+. +++...       +|+|..||..+++......-               ....-.+.-..++|.
T Consensus        16 ~~~g~EGpa~d~dG~l-y~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~   79 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDF-YIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCD   79 (314)
T ss_dssp             CCTTCEEEEECTTSCE-EEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEEC
T ss_pred             CCCCCeEeEEeCCCCE-EEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEe
Confidence            3445678899999994 554322       46788999888765331000               001111235689999


Q ss_pred             CCCCeEEEEeCCCeEEEEEccCCceeeeeeeeeccc-CCeeEEEEcCCCCeeEEEEecC---------------CCcEEE
Q 001258          430 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKV  493 (1113)
Q Consensus       430 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~~~~~~~l~s~s~---------------d~~i~i  493 (1113)
                      ++|..|.++...+.|...+..++..........+.. ...+.++|.++|.  +.++...               ++.|..
T Consensus        80 ~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~  157 (314)
T d1pjxa_          80 RDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYC  157 (314)
T ss_dssp             SSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEE
T ss_pred             CCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEE
Confidence            999988888777778888887654221110111111 1367899999998  5555321               233444


Q ss_pred             EeCCCCceeeEeeccCcCEEEEeeeecCCc---eEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          494 WDATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       494 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      ++. .|+.... ......-+.++|++..++   .+.++-+..+.|..||+.........        .+.....      
T Consensus       158 ~~~-dg~~~~~-~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~~~------  221 (314)
T d1pjxa_         158 FTT-DGQMIQV-DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGHIP------  221 (314)
T ss_dssp             ECT-TSCEEEE-EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEECC------
T ss_pred             Eee-cCceeEe-eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEEcc------
Confidence            442 3443332 223344567788776543   24455566788888887643322110        0000000      


Q ss_pred             ccccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEE-EEEECCCcEEEEEcCC
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSD  649 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~  649 (1113)
                      +........++++.+|+.+++....+.|.+||.+.++.+..+....  ....+++|.||++.| ++.+.+|.|...++..
T Consensus       222 ~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         222 GTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            0011123346777788777777788999999998888777766542  356889999999755 5556678887777643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=4.8e-06  Score=92.59  Aligned_cols=232  Identities=11%  Similarity=0.094  Sum_probs=129.3

Q ss_pred             EEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC----
Q 001258          365 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS----  440 (1113)
Q Consensus       365 ~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----  440 (1113)
                      .|.+++.+ +.. ..+|.|.+||+.+++.....     +         .  .....-.+....|||||++++....    
T Consensus        23 ~W~~~~~~-~~~-~~~g~i~~~~~~~~~~~~l~-----~---------~--~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IYR-EQKGTVRLWNVETNTSTVLI-----E---------G--KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CCC-CSSSCEEEBCGGGCCCEEEE-----C---------T--TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EEE-eCCCcEEEEECCCCCEEEEE-----c---------C--ccccccccceeEECCCCCeEEEEEcccce
Confidence            58888885 433 45789999999988753311     0         0  1112235677899999999887643    


Q ss_pred             -----CCeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEee-ccCcCE--
Q 001258          441 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPV--  512 (1113)
Q Consensus       441 -----d~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~h~~~v--  512 (1113)
                           .+.+.|+|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                 5678999999887432 2222234456778999999996  33333 5678888887776554332 222222  


Q ss_pred             ---------------EEEeeeecCCceEEEEEec-CCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCc
Q 001258          513 ---------------YSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  576 (1113)
Q Consensus       513 ---------------~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  576 (1113)
                                     .++-|  ++||++|+.... +..|..+.+.....     .....+..+.+..-|..         
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~---------  224 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE---------  224 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC---------
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC---------
Confidence                           23334  456677776543 33344443321100     00011122222222210         


Q ss_pred             eeEEEecCCCCEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEEC-C---CcEEEEEcC
Q 001258          577 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN-D---NGIKILATS  648 (1113)
Q Consensus       577 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d---g~i~iwd~~  648 (1113)
                                      .....+.++|+.++..........    ....+..+.|++++++++...+ +   ..+.++|..
T Consensus       225 ----------------np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~  288 (465)
T d1xfda1         225 ----------------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (465)
T ss_dssp             ----------------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             ----------------CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence                            001246777876654432221111    1112567899999987666533 2   247778888


Q ss_pred             CC
Q 001258          649 DG  650 (1113)
Q Consensus       649 ~~  650 (1113)
                      ++
T Consensus       289 tg  290 (465)
T d1xfda1         289 TG  290 (465)
T ss_dssp             TC
T ss_pred             CC
Confidence            87

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=1.8e-06  Score=88.94  Aligned_cols=200  Identities=12%  Similarity=0.159  Sum_probs=110.8

Q ss_pred             CCCcceEEEEEcCCCCeEEEEeCCC---eEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEE
Q 001258          418 DPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  494 (1113)
Q Consensus       418 ~h~~~V~~l~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iw  494 (1113)
                      .+...+...+|||||++||......   .+.+.+..++...    .+..+.+......|+|+|+.+.+ ....++...++
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i~~-~~~~~~~~~~~  110 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKLAF-ALSKTGSLNLY  110 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEEEE-EECTTSSCEEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCeeeE-eeecCCcccee
Confidence            3456788999999999999875443   4666677666533    35567888999999999996333 33333333333


Q ss_pred             eCC--CCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEE--EcCCCCCeeeeeCCCCceEEEEEccCCCeEEe
Q 001258          495 DAT--NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  570 (1113)
Q Consensus       495 d~~--~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  570 (1113)
                      ...  ...... ............++.... ..+++...+|...+|  ++...... .+...........++|+++    
T Consensus       111 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~----  183 (269)
T d2hqsa1         111 VMDLASGQIRQ-VTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGK----  183 (269)
T ss_dssp             EEETTTCCEEE-CCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSS----
T ss_pred             eccccccccee-eeeccccccccccccccc-cceecccccCCceEeeeecccccce-eeecccccccccccccccc----
Confidence            322  222222 222333333333433332 355555556654444  44433222 2222333444555666655    


Q ss_pred             ccccCceeEEEecCCCCEEEEEe-cCCc--EEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECC---CcEEE
Q 001258          571 GFRKRSLGVVQFDTTKNRFLAAG-DDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKI  644 (1113)
Q Consensus       571 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~i  644 (1113)
                                       .++..+ ..+.  +.+.+...+.. .... .  ........|+|||+.|+..+..   ..|.+
T Consensus       184 -----------------~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~--~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~  242 (269)
T d2hqsa1         184 -----------------FMVMVSSNGGQQHIAKQDLATGGV-QVLS-S--TFLDETPSLAPNGTMVIYSSSQGMGSVLNL  242 (269)
T ss_dssp             -----------------EEEEEEECSSCEEEEEEETTTCCE-EECC-C--SSSCEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             -----------------eeEEEeecCCceeeeEeecccccc-eEee-c--CccccceEECCCCCEEEEEEcCCCCcEEEE
Confidence                             455443 3334  44445444433 2222 2  2245678999999998866543   35778


Q ss_pred             EEcCCC
Q 001258          645 LATSDG  650 (1113)
Q Consensus       645 wd~~~~  650 (1113)
                      +++..+
T Consensus       243 ~~~dg~  248 (269)
T d2hqsa1         243 VSTDGR  248 (269)
T ss_dssp             EETTSC
T ss_pred             EECCCC
Confidence            888665

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.69  E-value=2e-06  Score=90.28  Aligned_cols=237  Identities=14%  Similarity=0.121  Sum_probs=148.0

Q ss_pred             CccEEEEecCCCEEEEEe--------CCeEEEEECCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEecCCcEEEE
Q 001258          820 AVPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIY  887 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--------dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~v~iw  887 (1113)
                      ....++|+++|++.++..        +|+|..||..++.........    ......++|.+ +++.++++.....|..+
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            356789999999887643        367889998877654333221    22356899999 77777777777778888


Q ss_pred             Ecccceeeeeecccc----cCeEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCccccccccccCCCC
Q 001258          888 NVRVDEVKSKLKGHS----KRITGLAFSHALNVLVSSGA---------------DSQLCVWSSDGWEKQKNRFLQIPTGR  948 (1113)
Q Consensus       888 d~~~~~~~~~l~~h~----~~V~~l~~s~d~~~L~s~s~---------------D~~v~iwd~~~~~~~~~~~~~~~~~~  948 (1113)
                      +...+..........    ...+.+++.++|++.++-..               ++.|..++.+. +. . ......   
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~-~-~~~~~~---  171 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM-I-QVDTAF---  171 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE-E-EEEEEE---
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce-e-EeeCCc---
Confidence            876543221111111    23678999999998887532               22343343322 11 0 011000   


Q ss_pred             CCCCCCCceEEEccCCc----EEEEE--cCCeEEEEeCCccceee------ccccCCCCCCeeEEEECCCCCEEEEEeCC
Q 001258          949 TPTAQSDTRVQFHQDQI----HFLVV--HETQLAIFETTKLECVK------QWVPRESSAPITHATFSCDSQLVYACFLD 1016 (1113)
Q Consensus       949 ~~~~~~i~~~~~spdg~----~l~~~--~d~~v~v~d~~~~~~~~------~~~~~~h~~~v~~l~~s~dg~~l~s~~~D 1016 (1113)
                          .....++|+|++.    .|+++  ..+.|..|++.....+.      .+. ..+......+++..+|++.++....
T Consensus       172 ----~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~-~~~~~~pdGiavD~~GnlyVa~~~~  246 (314)
T d1pjxa_         172 ----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             ----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             ----ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcc-ccccccceeeEEecCCcEEEEEcCC
Confidence                1235789998764    45443  66788888875432221      111 1123346689999999988887788


Q ss_pred             CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCC-EEEEEeCCCcEEEEeccC
Q 001258         1017 ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLE 1078 (1113)
Q Consensus      1017 g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~-~l~s~~~Dg~v~vW~~~~ 1078 (1113)
                      +.|.+||.++++....+..+       ....+  .++|.| |++ ++++.+.+|.|...++..
T Consensus       247 g~I~~~dp~~g~~~~~i~~p-------~~~~t--~~afg~-d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         247 SHIEVFGPDGGQPKMRIRCP-------FEKPS--NLHFKP-QTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TEEEEECTTCBSCSEEEECS-------SSCEE--EEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred             CEEEEEeCCCCEEEEEEECC-------CCCEE--EEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence            99999999988877665521       12223  588888 666 556667778777777543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.68  E-value=5.6e-06  Score=87.15  Aligned_cols=234  Identities=12%  Similarity=0.065  Sum_probs=147.2

Q ss_pred             CCccEEEEecCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecC----CcEEEEEcccce
Q 001258          819 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDE  893 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~v~iwd~~~~~  893 (1113)
                      ..+..++|+++|++.++-. ++.|..|+.++.+....+.........+++++ +|+++++...+    +.+...+..++.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            3456899999998666554 78999999888766666555566788999999 88887765432    335555544444


Q ss_pred             eeeeecc--cccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCc
Q 001258          894 VKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  965 (1113)
Q Consensus       894 ~~~~l~~--h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~  965 (1113)
                      .......  -....+.+++.++|++.++....      +.+..++.+.....  ......       .....++|+||++
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg~  189 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDEK  189 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTSS
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeeccccc
Confidence            3332221  12357889999999987765332      22444444432211  011100       1346799999999


Q ss_pred             EEEEE--cCCeEEEEeCCcc-ceeec-----cccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCc
Q 001258          966 HFLVV--HETQLAIFETTKL-ECVKQ-----WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1037 (1113)
Q Consensus       966 ~l~~~--~d~~v~v~d~~~~-~~~~~-----~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~ 1037 (1113)
                      .|+++  ..+.|..|++... .....     ............+++..+|.+.++....+.|.+|| ..|+.+.++..+.
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~~P~  268 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQILIPG  268 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEECTT
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEeCCC
Confidence            77664  6788999987532 11111     00011123356899999999888888899999999 5789988887544


Q ss_pred             ccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258         1038 YLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus      1038 ~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                      ..+ ++...++  +++|.| +++.+++...
T Consensus       269 ~~~-~~~~~~~--~~~~~~-~~~~~~~t~~  294 (319)
T d2dg1a1         269 RDE-GHMLRST--HPQFIP-GTNQLIICSN  294 (319)
T ss_dssp             GGG-TCSCBCC--EEEECT-TSCEEEEEEE
T ss_pred             cCC-CcCceee--eEEEeC-CCCEEEEEcC
Confidence            322 3333444  588888 4555555443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.63  E-value=2.4e-05  Score=82.23  Aligned_cols=243  Identities=12%  Similarity=0.060  Sum_probs=147.6

Q ss_pred             CCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEE
Q 001258          357 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  436 (1113)
Q Consensus       357 h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  436 (1113)
                      ....+..++|.++|+ |.++-...+.|..|+..+++....                   ..........++|++||++++
T Consensus        38 ~~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~v   97 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFV   97 (319)
T ss_dssp             SCCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEE
T ss_pred             CCcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEE
Confidence            344567999999998 688877889999999887654431                   223344678999999999888


Q ss_pred             EEeCC----CeEEEEEccCCceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCceeeEee
Q 001258          437 VAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFE  506 (1113)
Q Consensus       437 s~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~------d~~i~iwd~~~~~~~~~~~  506 (1113)
                      +...+    +.|...+..++...... .-..-....+.+++.++|.  +.++...      .+.+..++.. +..+..+.
T Consensus        98 a~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~  173 (319)
T d2dg1a1          98 CYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPII  173 (319)
T ss_dssp             EECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEE
T ss_pred             EecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEe
Confidence            76432    33444455544422211 1111123578899999998  5555322      1235555533 33344433


Q ss_pred             ccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCC
Q 001258          507 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  586 (1113)
Q Consensus       507 ~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  586 (1113)
                      ..-...+.++|+++.+ .+.++-+..+.|..|++...........     ........        .......++++.+|
T Consensus       174 ~~~~~pnGia~s~dg~-~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~~--------~~~~PdGl~vD~~G  239 (319)
T d2dg1a1         174 QNISVANGIALSTDEK-VLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFT--------GHEGPDSCCIDSDD  239 (319)
T ss_dssp             EEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECC--------SSSEEEEEEEBTTC
T ss_pred             eccceeeeeeeccccc-eEEEecccCCceEEEEEcCCCceecccc-----ceeeeccC--------CccceeeeeEcCCC
Confidence            3334557788765432 3446667788999998875332211000     00000000        00112346777888


Q ss_pred             CEEEEEecCCcEEEEECCCCceEEEEccCC----CCCCcCeEEECCCCCEEEEEEC
Q 001258          587 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       587 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                      +..++....+.|.+||. .|+.+..+....    +...+.+++|.+++..+++...
T Consensus       240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            87888888999999996 688888876442    2335789999998877766654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=7e-05  Score=76.94  Aligned_cols=226  Identities=15%  Similarity=0.163  Sum_probs=128.3

Q ss_pred             EEEecC--CCEEEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEec-CC-----cEEEEEcccceee
Q 001258          824 FALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS-----SIQIYNVRVDEVK  895 (1113)
Q Consensus       824 l~~s~~--~~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg-----~v~iwd~~~~~~~  895 (1113)
                      +.++||  |+.++..++|.|.+.|+.+++. +.+..+...+...+||| ||+.||.... ++     .|.+++..+++..
T Consensus         4 ~~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CCEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             cccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            346788  9999998999999999998775 45555667789999999 8888876542 22     4778888777654


Q ss_pred             eeec------ccccCeEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC
Q 001258          896 SKLK------GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       896 ~~l~------~h~~~V~~l~~s~d~~~L~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      ....      .........+|+|||+.|+.....      ..+...+...+..     .....+      ... ..+.++
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~------~~~-~~~~~~  149 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINF-----VPLNLG------PAT-HILFAD  149 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEE-----EECCSC------SCS-EEEEET
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCcee-----EEecCC------ccc-eeeecC
Confidence            3211      122345678999999999876432      1244445444221     111111      223 344455


Q ss_pred             CcEEEE-E-cCC-----------eEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC--CcEEEEecCCCc
Q 001258          964 QIHFLV-V-HET-----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1028 (1113)
Q Consensus       964 g~~l~~-~-~d~-----------~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D--g~v~vwd~~~~~ 1028 (1113)
                      +..++. . .+.           ...+............   .+........++++. .+.....+  ..|.++|+++++
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~g~~  225 (281)
T d1k32a2         150 GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV---DMSTHVSSPVIVGHR-IYFITDIDGFGQIYSTDLDGKD  225 (281)
T ss_dssp             TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE---CCSSCCEEEEEETTE-EEEEECTTSSCEEEEEETTSCS
T ss_pred             CCeEEEeeccccceeeeeccCCcceeeeeccccceeecc---CCccccceeeeeccc-cceecccccccceEEEeCCCCc
Confidence            444443 2 111           1112222222221111   123344455555553 22323333  347788887766


Q ss_pred             eeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeCCCcEEEEeccCCC
Q 001258         1029 LRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1029 ~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      .. ++.       .+ ....  ...|+| ||+.|+.. .++.|+++|+.+++
T Consensus       226 ~~-~lt-------~~-~~~~--~~~~Sp-DG~~I~f~-~~~~l~~~d~~~g~  264 (281)
T d1k32a2         226 LR-KHT-------SF-TDYY--PRHLNT-DGRRILFS-KGGSIYIFNPDTEK  264 (281)
T ss_dssp             CE-ECC-------CC-CSSC--EEEEEE-SSSCEEEE-ETTEEEEECTTTCC
T ss_pred             eE-Eee-------cC-CCcc--cccCcC-CCCEEEEE-eCCEEEEEECCCCC
Confidence            54 332       11 1111  135788 67777654 47889999999988

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.24  E-value=4.3e-05  Score=78.59  Aligned_cols=93  Identities=13%  Similarity=0.098  Sum_probs=64.0

Q ss_pred             EEcCC--CCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeC-C
Q 001258          365 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R  441 (1113)
Q Consensus       365 ~~spd--g~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d  441 (1113)
                      ..|||  |++++.+.  +|.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46899  99866553  5678888999887643                    4556778899999999999997542 2


Q ss_pred             -----CeEEEEEccCCceeeeeee---eecccCCeeEEEEcCCCCe
Q 001258          442 -----HIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQ  479 (1113)
Q Consensus       442 -----~~i~iwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~~~~~  479 (1113)
                           ..|.+++..+++..+....   ............|+|||+.
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence                 2477778888765431100   1122235678899999994

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.13  E-value=0.00091  Score=68.60  Aligned_cols=222  Identities=7%  Similarity=0.005  Sum_probs=142.2

Q ss_pred             cEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeec
Q 001258          822 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  899 (1113)
Q Consensus       822 ~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~  899 (1113)
                      .+..|++....|....  .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            4567787666565554  688999999887643 332 245688999988 7777764 444 58899999886543222


Q ss_pred             --c--cccCeEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE-
Q 001258          900 --G--HSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  970 (1113)
Q Consensus       900 --~--h~~~V~~l~~s~d~~~L~s~s~D----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~-  970 (1113)
                        .  ....++.+.+.++|++.++...+    +.-.+|.+..++...     ...+.    .....++|+++++.+..+ 
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~-----~~~~~----~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK-----LFADI----SIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE-----EEEEE----SSEEEEEECTTSCEEEEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE-----Eeecc----CCcceeeecCCCceEEEee
Confidence              1  12357899999999988765432    344566665543211     11111    134689999999987764 


Q ss_pred             -cCCeEEEEeCCccc--ee----eccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCCCcccCCCc
Q 001258          971 -HETQLAIFETTKLE--CV----KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1043 (1113)
Q Consensus       971 -~d~~v~v~d~~~~~--~~----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh 1043 (1113)
                       ..+.|..|++....  ..    ......+-.+....+++..+|.+.++.-..+.|..|| ..|+.+..+..+.      
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~------  239 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPG------  239 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSC------
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCC------
Confidence             56788888864321  11    1111112245678899999999888777788999999 5788888887322      


Q ss_pred             ccCccceEEEEeCCCCCEE-EEEeC
Q 001258         1044 SSNVHPLVIAAHPQEPNEF-ALGLS 1067 (1113)
Q Consensus      1044 ~~~v~~i~~~~~p~d~~~l-~s~~~ 1067 (1113)
                       ..++  +++|-..|.+.| +|...
T Consensus       240 -~~~T--~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         240 -KQTT--CPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             -SBEE--EEEEESTTSCEEEEEEBC
T ss_pred             -CceE--EEEEeCCCCCEEEEEECC
Confidence             2333  578865465555 44443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.08  E-value=0.00078  Score=69.14  Aligned_cols=232  Identities=12%  Similarity=0.067  Sum_probs=143.2

Q ss_pred             EEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCC
Q 001258          362 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  441 (1113)
Q Consensus       362 ~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  441 (1113)
                      .+..|.+....|..+--..+.|.-||..+++...      +               .....+.++++.++|.+++++ .+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~---------------~~~~~~~~i~~~~dg~l~va~-~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------H---------------ALPFMGSALAKISDSKQLIAS-DD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------E---------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------E---------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence            4667888666567666667899999999876532      1               112368899999999877754 45


Q ss_pred             CeEEEEEccCCceeeeeeeeecc--cCCeeEEEEcCCCCeeEEEEecC----CCcEEEEeCCCCceeeEeeccCcCEEEE
Q 001258          442 HIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSV  515 (1113)
Q Consensus       442 ~~i~iwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~~~~~~~l~s~s~----d~~i~iwd~~~~~~~~~~~~h~~~v~~~  515 (1113)
                      | |.++|..+++... +......  ...++.+.+.|+|.  +.++...    .+.-.+|.+..++....+.. -..-+.+
T Consensus        79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence            4 8899999887432 2122111  23588999999998  4444321    23456777777765544443 3345677


Q ss_pred             eeeecCCceEEEEEecCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEEecC
Q 001258          516 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  595 (1113)
Q Consensus       516 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  595 (1113)
                      +|++..+ .++++.+..+.|..++++.......-   ..  . +.....+       .......++++.+|+..++.-..
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~~--~-~~~~~~~-------~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---KA--E-VFIDSTG-------IKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---CC--E-EEEECTT-------SSSEEEEEEECTTSCEEEEEETT
T ss_pred             eecCCCc-eEEEeecccceeeEeeeccccccccc---ce--E-EEeccCc-------ccccccceEEcCCCCEEeeeeCC
Confidence            7765443 35666677888988887542221100   00  0 0000000       01123445666777767776678


Q ss_pred             CcEEEEECCCCceEEEEccCCCCCCcCeEEEC-CCCCEEEEEE
Q 001258          596 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVST  637 (1113)
Q Consensus       596 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~  637 (1113)
                      +.|..||. .|+.+..+....  ..+++++|- +|.+.|++.+
T Consensus       220 g~V~~~dp-~G~~~~~i~lP~--~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         220 GAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             TEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEE
T ss_pred             CceEEecC-CCcEeeEecCCC--CceEEEEEeCCCCCEEEEEE
Confidence            89999995 688888887653  357899996 5766665443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.83  E-value=0.0094  Score=61.48  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=65.9

Q ss_pred             CccEEEEecCCCEEEEEe--CCeEEEEECCCCcee-----------eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEE
Q 001258          820 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-----------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI  886 (1113)
Q Consensus       820 ~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~-----------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~i  886 (1113)
                      ....+.++|||+++++++  +.++.|+|++.....           ..-....-.-...+|+. .|.-..+-.-|..|.-
T Consensus       276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~k  354 (459)
T d1fwxa2         276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVK  354 (459)
T ss_dssp             SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEE
T ss_pred             CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEE
Confidence            355789999999999988  799999998632211           01111122345678887 6765566668999999


Q ss_pred             EEcccc----------eeeeeecccccCeEEEE------EcCCCCEEEEEeC
Q 001258          887 YNVRVD----------EVKSKLKGHSKRITGLA------FSHALNVLVSSGA  922 (1113)
Q Consensus       887 wd~~~~----------~~~~~l~~h~~~V~~l~------~s~d~~~L~s~s~  922 (1113)
                      |++...          ..+.++.-|-. +-.+.      ..|||++|++...
T Consensus       355 w~~~~~~~~~~~~~~~~v~~k~~v~y~-~gh~~~~~g~t~~~dgk~l~~~nk  405 (459)
T d1fwxa2         355 WNIEDAIRAYAGEKVDPIKDKLDVHYQ-PGHLKTVMGETLDATNDWLVCLSK  405 (459)
T ss_dssp             EEHHHHHHHHHTCSCCCEEEEEECSSC-EEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EecchhhhhhccccCCcceeccccccC-CCCCccCcCCcCCCCCCEEEEecc
Confidence            998543          44455544432 23332      3589999998753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.78  E-value=0.0055  Score=63.26  Aligned_cols=253  Identities=13%  Similarity=0.130  Sum_probs=151.4

Q ss_pred             EEEEe---cCCCEEEEEe--CCeEEEEECCCCceeeeecC-CCCCeeEEEEecC-CCcEEEEEecCC-------------
Q 001258          823 CFALS---KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDDS-------------  882 (1113)
Q Consensus       823 ~l~~s---~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~la~g~~dg-------------  882 (1113)
                      .+.+.   +||+++++..  ++.|.+.|+++.++.+.+.. ....+..+...++ ...+++.++++.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45554   4899999997  68999999999988664432 3445666666541 345777666532             


Q ss_pred             -----cEEEEEcccceeeeeecccccCeEEEEEcCCCCEEEEEeCCC---------------cEEEEeCCCCcc------
Q 001258          883 -----SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGWEK------  936 (1113)
Q Consensus       883 -----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~---------------~v~iwd~~~~~~------  936 (1113)
                           .+.++|..+.+...++.- .+....+.+++||+++++.+.+.               .+.++++...+.      
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                 366788888777665543 23466799999999999887542               133333211100      


Q ss_pred             ---------------cccccc-ccCCCCCCCCCCCceEEEccCCcEEEEE--cCCeEEEEeCCccceeec--------cc
Q 001258          937 ---------------QKNRFL-QIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQ--------WV  990 (1113)
Q Consensus       937 ---------------~~~~~~-~~~~~~~~~~~~i~~~~~spdg~~l~~~--~d~~v~v~d~~~~~~~~~--------~~  990 (1113)
                                     ...... .++.+     .....+.++|||++++++  -+.++.|+|+++......        ..
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             cEEeCCceeecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                           000010 11111     234789999999999995  678999999875332110        00


Q ss_pred             c-CCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCC----------ceeeecCCCcccCCCcccCccceEEEEeCCCC
Q 001258          991 P-RESSAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSNVHPLVIAAHPQEP 1059 (1113)
Q Consensus       991 ~-~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~----------~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~ 1059 (1113)
                      . .........-+|+.+|.-..+-.-|..|.-|++...          ..+.++..+ |.+ ||......  -...| ||
T Consensus       323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~-y~~-gh~~~~~g--~t~~~-dg  397 (459)
T d1fwxa2         323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHLKTVMG--ETLDA-TN  397 (459)
T ss_dssp             ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEEEETTT--TSTTC-CS
T ss_pred             eecccCcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccc-cCC-CCCccCcC--CcCCC-CC
Confidence            0 012445667789888865666678999999998533          444444322 222 44221111  11123 78


Q ss_pred             CEEEEEeC---CC----------cEEEEeccCCCccccCC
Q 001258         1060 NEFALGLS---DG----------GVHVFEPLESEGKWGVP 1086 (1113)
Q Consensus      1060 ~~l~s~~~---Dg----------~v~vW~~~~~~~~~~~~ 1086 (1113)
                      ++|++...   |.          +-.+.|++..++++-..
T Consensus       398 k~l~~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d  437 (459)
T d1fwxa2         398 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHD  437 (459)
T ss_dssp             SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEE
T ss_pred             CEEEEecccccccccCCCCCCCccceEEEcCCCeeEEEec
Confidence            88888753   22          45577887666554433

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.61  E-value=0.063  Score=60.18  Aligned_cols=60  Identities=15%  Similarity=0.135  Sum_probs=45.9

Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      +.+.-+|+.+|+..-.....   .++..-.++..|.++++|+.||.++.+|.++|+.+-++..
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            56888899999887766532   2333223445788888999999999999999999998873

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.49  E-value=0.035  Score=62.11  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=43.7

Q ss_pred             CeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecC
Q 001258          973 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       973 ~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      +.|.-+|+.+|+.+-+.....   +..+-.++-.+.++++|+.||.++.+|.++|+.+-++.
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~  502 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            578889999999876654321   12211223356688889999999999999999998887

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.48  E-value=0.0041  Score=70.17  Aligned_cols=154  Identities=9%  Similarity=0.058  Sum_probs=88.8

Q ss_pred             cEEEEEecCCcEEEEEcccceeeeeeccccc-----------------------------------CeEEEEEcCCCCEE
Q 001258          873 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-----------------------------------RITGLAFSHALNVL  917 (1113)
Q Consensus       873 ~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~-----------------------------------~V~~l~~s~d~~~L  917 (1113)
                      ..++.++.+|.++++|..+|+.+........                                   .-...+++|+...+
T Consensus       328 ~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~  407 (573)
T d1kb0a2         328 KVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (573)
T ss_dssp             EEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             eeeeeccccceeEEeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence            4677888999999999999887654321100                                   01124677777778


Q ss_pred             EEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEcCCeEEEEeCCccceeeccccCCCCCC
Q 001258          918 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP  997 (1113)
Q Consensus       918 ~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~d~~v~v~d~~~~~~~~~~~~~~h~~~  997 (1113)
                      +....+....++.....+...........+.     ......+ +++.-.....-+.+.-||+.+++.+-.....   .+
T Consensus       408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~---~p  478 (573)
T d1kb0a2         408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT-----GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SP  478 (573)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGG-----TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SS
T ss_pred             EeeccccceeeecccccccccCCCCcccccc-----ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC---CC
Confidence            7777777666666554322110000000000     0000000 0000000011246788889888887665432   22


Q ss_pred             eeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          998 ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       998 v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                      ...=.++-.|.+|++|+.||.++.+|.++|+.+-.+..
T Consensus       479 ~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            22223344788999999999999999999999988873

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.46  E-value=0.021  Score=63.92  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=51.1

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe-EEEEEcCCCC-E
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  916 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  916 (1113)
                      |.|.-||+.+++.+-...... ....-.++- .+.++++|+.||.++-+|..+|+.+-+++-..... .-+.+..||+ +
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            457788888888776654221 121112233 45688889999999999999999997775432211 1245556775 5


Q ss_pred             EEEEe
Q 001258          917 LVSSG  921 (1113)
Q Consensus       917 L~s~s  921 (1113)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55444

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.45  E-value=0.065  Score=52.86  Aligned_cols=203  Identities=9%  Similarity=-0.033  Sum_probs=131.8

Q ss_pred             CCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee
Q 001258          819 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  896 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~  896 (1113)
                      ..+.+++|+...+.|....  ++.|+..++........+......+..+++....+++..+-...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            3467899998888888876  58899999887655555544446788999987445555555567899999987654333


Q ss_pred             eecccccCeEEEEEcCCCCEEEEEeCC-CcEEEE--eCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE--c
Q 001258          897 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  971 (1113)
Q Consensus       897 ~l~~h~~~V~~l~~s~d~~~L~s~s~D-~~v~iw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~--~  971 (1113)
                      .+......+..+++.|...+|...... +..+||  +++......  ..  ..+.    .....+++.+.+..|..+  .
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~--i~--~~~~----~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRI--LA--QDNL----GLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEE--EE--CTTC----SCEEEEEEETTTTEEEEEETT
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCcee--ee--eecc----cccceEEEeecCcEEEEEeCC
Confidence            333344678999999887777655432 333455  454432211  11  1111    244789999888877664  5


Q ss_pred             CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecC
Q 001258          972 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1034 (1113)
Q Consensus       972 d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~ 1034 (1113)
                      .+.|...++........+.  + .....+|++.  +.+|+... ..+.|...|..+++....+.
T Consensus       188 ~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            6789999997665443332  2 2234577775  45555444 56889999999888776553

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.44  E-value=0.049  Score=61.11  Aligned_cols=77  Identities=14%  Similarity=0.086  Sum_probs=49.0

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc----cccCeEEEEEcCCC
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG----HSKRITGLAFSHAL  914 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~d~  914 (1113)
                      |.|.-||+.+++.+-..... .....-.++- .+.++++|+.||.++-+|..+|+.+-+++-    +..+   +.|..||
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P---~tY~~dG  527 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYP---MTYTHKG  527 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCC---eEEEECC
Confidence            46777888888776554311 1122212233 456888899999999999999999977753    2233   3455577


Q ss_pred             C-EEEEE
Q 001258          915 N-VLVSS  920 (1113)
Q Consensus       915 ~-~L~s~  920 (1113)
                      + +++..
T Consensus       528 kQYvav~  534 (596)
T d1w6sa_         528 TQYVAIY  534 (596)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5 44433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.44  E-value=0.019  Score=64.23  Aligned_cols=149  Identities=10%  Similarity=0.015  Sum_probs=92.2

Q ss_pred             cEEEEEcccceeeeeecccccCeEE---------EEEcCCC---CEEEEEeCCCcEEEEeCCCCcccccccccc------
Q 001258          883 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------  944 (1113)
Q Consensus       883 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~---~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~------  944 (1113)
                      .|.-.|+.+++.+..++.....++.         +....++   ..++.++.+|.+.++|-.+++.........      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            4666688888877655442222211         1122233   357778899999999998887542111000      


Q ss_pred             -----------------------CCCCCCCCCCCceEEEccCCcEEEE-Ec-----------------------------
Q 001258          945 -----------------------PTGRTPTAQSDTRVQFHQDQIHFLV-VH-----------------------------  971 (1113)
Q Consensus       945 -----------------------~~~~~~~~~~i~~~~~spdg~~l~~-~~-----------------------------  971 (1113)
                                             ..+.. ....-...+++|+...+++ ..                             
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~-Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPF-GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTT-CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             cChhhccccccccccccccceeeeeccc-cccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                   00000 0001135678888777775 21                             


Q ss_pred             -------CCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceeeecCC
Q 001258          972 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1035 (1113)
Q Consensus       972 -------d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~~~~~ 1035 (1113)
                             .+.+.-+|+.+++.+-......   +..+-.++-.+.++++|+.||.++.+|.++|+.+-++..
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence                   1457788999998887765432   222223344677888999999999999999999998873

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.42  E-value=0.03  Score=59.51  Aligned_cols=261  Identities=14%  Similarity=0.074  Sum_probs=132.1

Q ss_pred             eecCCCCccccccccCCCCCCCCccEEEEecCCCEEEEEe--CCeEEEEECCCCceeeeecC-CCCCeeEEEEecCCCcE
Q 001258          798 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNI  874 (1113)
Q Consensus       798 ~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~  874 (1113)
                      .+||+.++...........+.....+.++.++|++++.|.  ...+.+||..+..-...-.. ....-.+++..+ |+++
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v  133 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV  133 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence            4677777654332211112334445678889999999987  36899999987554322111 112234566667 8899


Q ss_pred             EEEEecC------CcEEEEEcccceeee--eec-------ccc-----cCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001258          875 IAIGMDD------SSIQIYNVRVDEVKS--KLK-------GHS-----KRITGLAFSHALNVLVSSGADSQLCVWSSDGW  934 (1113)
Q Consensus       875 la~g~~d------g~v~iwd~~~~~~~~--~l~-------~h~-----~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~  934 (1113)
                      ++.|+.+      ..+.+||..+.+-..  ...       .+.     +.-..+...++|+.++.++.++.+.+++..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            9988753      368999987753211  110       011     01111233457777887777777777777664


Q ss_pred             ccccccccccCCCCCCCCCCCceEEE-ccCCcEEEEE-cC--------CeEEEEeCCcc---ceee-ccccCCCCCCeeE
Q 001258          935 EKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVV-HE--------TQLAIFETTKL---ECVK-QWVPRESSAPITH 1000 (1113)
Q Consensus       935 ~~~~~~~~~~~~~~~~~~~~i~~~~~-spdg~~l~~~-~d--------~~v~v~d~~~~---~~~~-~~~~~~h~~~v~~ 1000 (1113)
                      .-..................-..+.+ ..+++.++.+ ..        ....+.+....   .... ......+...-.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  293 (387)
T d1k3ia3         214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  293 (387)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence            32211111111111110011122222 3466666663 21        12333333211   1111 1111111223345


Q ss_pred             EEECCCCCEEEEEeCC-----------CcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC
Q 001258         1001 ATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS 1067 (1113)
Q Consensus      1001 l~~s~dg~~l~s~~~D-----------g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~ 1067 (1113)
                      ....+||++++.|+.+           .++.+||.++.+-. .+.........|+.      ....+ ||+.++.|+.
T Consensus       294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~-~~~~~~~~R~~Hs~------a~l~~-dG~v~v~GG~  363 (387)
T d1k3ia3         294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY-KQNPNSIVRVYHSI------SLLLP-DGRVFNGGGG  363 (387)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE-ECCCCSSCCCTTEE------EEECT-TSCEEEEECC
T ss_pred             eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEE-ECCCCCCcccceEE------EEECC-CCEEEEEeCC
Confidence            6667899999988853           14788998877543 22211111112221      22234 8899999884

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.42  E-value=0.056  Score=60.30  Aligned_cols=167  Identities=13%  Similarity=0.057  Sum_probs=90.8

Q ss_pred             EEEEecCCCcEEEEeCCCCceeeEeeccC----cCEEEEeeeecCCceEEEEEe------cCCcEEEEEcCCCCCeeeee
Q 001258          481 CVITCGDDKTIKVWDATNGAKQYIFEGHE----APVYSVCPHHKENIQFIFSTA------LDGKIKAWLYDNLGSRVDYE  550 (1113)
Q Consensus       481 ~l~s~s~d~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~  550 (1113)
                      .++.++.|+.+.--|.++|+.+.......    ..+++--...  + ..++.+.      .+|.|+-+|+.+++.+..+.
T Consensus       117 ~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~--~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA--K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             eEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe--C-CeEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            36777889999999999999876553211    1111100001  1 2344444      37889999999998888654


Q ss_pred             CCCCceEEEEEccCCC------------------eEEeccccCceeEEEecCCCCEEEEEec----------------CC
Q 001258          551 APGRWCTTMAYSADGT------------------RTYQGFRKRSLGVVQFDTTKNRFLAAGD----------------DF  596 (1113)
Q Consensus       551 ~~~~~v~~~~~s~~~~------------------~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------dg  596 (1113)
                      .....-. .....+..                  ..+.......-...++++....++.+..                ..
T Consensus       194 t~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         194 ATGSDDS-VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             SSSCHHH-HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCccc-ccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence            4321100 00000000                  0000000011122455555555555443                35


Q ss_pred             cEEEEECCCCceEEEEccCCCCC-------CcCeEEECCCCC---EEEEEECCCcEEEEEcCCCc
Q 001258          597 SIKFWDMDSVQLLTSIDADGGLP-------ASPRIRFNKDGC---LLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       597 ~i~iwd~~~~~~~~~~~~~~~~~-------~v~~~~~s~~~~---~l~~~~~dg~i~iwd~~~~~  651 (1113)
                      .+...|.++|+.+..++...+..       ......+..+++   .++.++.+|.+.++|..+++
T Consensus       273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~  337 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN  337 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred             ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence            67788999999888876543310       111112222443   56788899999999999994

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.026  Score=55.86  Aligned_cols=229  Identities=13%  Similarity=0.069  Sum_probs=139.3

Q ss_pred             CCEEEEEeCCeEEEEECCCCcee-----eeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC
Q 001258          830 DSYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR  904 (1113)
Q Consensus       830 ~~~l~~~sdg~i~vwd~~~~~~~-----~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~  904 (1113)
                      |.+|+.+..+.|+-.+++.....     ..+..+...+..++|.+.++.+..+-..++.|+..++........+..-...
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~   80 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccc
Confidence            45777777788888888654321     1122233457789999844444444446678988888765544444444456


Q ss_pred             eEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEEc--CC--eEEEEe
Q 001258          905 ITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ET--QLAIFE  979 (1113)
Q Consensus       905 V~~l~~s~d~~~L~-s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~~--d~--~v~v~d  979 (1113)
                      +.+|++..-+..|. +-...+.|.+.+++......   +.  ....   ..+..+++.|...++....  .+  .|...+
T Consensus        81 p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~---l~--~~~l---~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV---LF--DTGL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EE--CSSC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE---Ee--cccc---cCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            88999986566665 44556789999988643211   11  1111   2468899999887777642  22  344445


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEe-CCCcEEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCC
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQE 1058 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~Dg~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d 1058 (1113)
                      ++.........  ..-.....+++++.++.|+.+. ..+.|...+++.......+.       +.   -.|..++..  +
T Consensus       153 ~dG~~~~~i~~--~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-------~~---~~P~~lav~--~  218 (263)
T d1npea_         153 MDGTNRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-------GL---QYPFAVTSY--G  218 (263)
T ss_dssp             TTSCCCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-------CC---CSEEEEEEE--T
T ss_pred             CCCCCceeeee--ecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-------CC---CCcEEEEEE--C
Confidence            55433322221  2245678999998888776654 56789999997655432222       21   123345554  3


Q ss_pred             CCEEEEEeCCCcEEEEeccCCC
Q 001258         1059 PNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1059 ~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      +.+..+-...++|...+..+++
T Consensus       219 ~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         219 KNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             TEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCEEEEEECCCCc
Confidence            4455555567889999988877

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.078  Score=52.42  Aligned_cols=233  Identities=11%  Similarity=0.029  Sum_probs=128.0

Q ss_pred             EEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEe-CCCeEEEEEccC
Q 001258          373 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHG  451 (1113)
Q Consensus       373 ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~i~iwd~~~  451 (1113)
                      ||++-  ...|+-.++.+.+...                    +......+.+++|.+.+++|.-.. .++.|.-.++..
T Consensus         4 Ll~s~--~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~   61 (266)
T d1ijqa1           4 LFFTN--RHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR   61 (266)
T ss_dssp             EEEEC--BSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred             EEEEC--CCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecC
Confidence            45543  3468888887654322                    222344678999999888777664 456677666654


Q ss_pred             Cceeeee-eeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEe
Q 001258          452 GDEVRQH-LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  530 (1113)
Q Consensus       452 ~~~~~~~-~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~  530 (1113)
                      ....... ..+......+..+++.+.++. +..+-...+.|.+.++........+.........+++++. .|.+.++..
T Consensus        62 ~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~  139 (266)
T d1ijqa1          62 AHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDW  139 (266)
T ss_dssp             ------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEecc
Confidence            2211111 122233456778999887776 3445566788999998766655555555566778887653 334444432


Q ss_pred             -cCCcEEEEEcCCCCCeeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCCEEEEE-ecCCcEEEEECCCCce
Q 001258          531 -LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQL  608 (1113)
Q Consensus       531 -~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~  608 (1113)
                       ..+.|...+++.................                     +++++.++.|+.+ ...+.|...++.....
T Consensus       140 ~~~~~I~r~~~dGs~~~~l~~~~~~~p~g---------------------l~iD~~~~~lYw~d~~~~~I~~~~~dG~~~  198 (266)
T d1ijqa1         140 GTPAKIKKGGLNGVDIYSLVTENIQWPNG---------------------ITLDLLSGRLYWVDSKLHSISSIDVNGGNR  198 (266)
T ss_dssp             SSSCEEEEEETTSCCEEEEECSSCSCEEE---------------------EEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCcceeEeccCCCceecccccccceeeE---------------------EEeeccccEEEEecCCcCEEEEEECCCCCE
Confidence             2344555555432222222222223344                     4444444445554 4567888888866544


Q ss_pred             EEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEEEEEcCCCc
Q 001258          609 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  651 (1113)
Q Consensus       609 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  651 (1113)
                      ..............++++. ++.+..+-..++.|...+..++.
T Consensus       199 ~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~  240 (266)
T d1ijqa1         199 KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (266)
T ss_dssp             EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCc
Confidence            4444333322234466666 33444444466788888877763

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.055  Score=53.60  Aligned_cols=206  Identities=7%  Similarity=-0.046  Sum_probs=127.8

Q ss_pred             CCCccEEEEecCCCEEEEEe--CCeEEEEECCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEccc
Q 001258          818 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  891 (1113)
Q Consensus       818 ~~~v~~l~~s~~~~~l~~~s--dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~  891 (1113)
                      ...+.+++|++..+.|....  .+.|...++....    ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            44567899999888888776  5778777765321    11223333455778999874555555556677899999887


Q ss_pred             ceeeeeecccccCeEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          892 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       892 ~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      ......+........+|++.|...+|....  ..+.|.-.+++......   +. ..+.    .....+++.+.+..|..
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~---l~-~~~~----~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LV-TENI----QWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EE-CSSC----SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceec---cc-cccc----ceeeEEEeeccccEEEE
Confidence            655555555567789999998766666554  33456666666533211   11 1111    23578999998887777


Q ss_pred             E--cCCeEEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEE-eCCCcEEEEecCCCceeeec
Q 001258          970 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRI 1033 (1113)
Q Consensus       970 ~--~d~~v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~Dg~v~vwd~~~~~~~~~~ 1033 (1113)
                      +  ..+.|...++...................++++.  +.+|+.. ..++.|...+..++.....+
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEE
Confidence            4  5678998998765543333322223456677776  3444444 45677888887777655444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.076  Score=51.55  Aligned_cols=90  Identities=11%  Similarity=0.101  Sum_probs=61.9

Q ss_pred             CCeEEEEECCCCc---ee-----eee--c--CCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCe
Q 001258          838 GGKISLFNMMTFK---TM-----ATF--M--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  905 (1113)
Q Consensus       838 dg~i~vwd~~~~~---~~-----~~~--~--~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V  905 (1113)
                      .++++|.++....   ..     ..+  .  ....-..++..|+ .-.++..-+.-|.|++||+.++.++..-+-..+.|
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~i  300 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETI  300 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEecCcEEEEEEcccccEEEEeecCCCce
Confidence            3789999986521   11     111  1  1133457888888 66688889999999999999999987777667777


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEE
Q 001258          906 TGLAFSHALNVLVSSGADSQLCV  928 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~v~i  928 (1113)
                      ...+-..+..-++....+|.|.-
T Consensus       301 F~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         301 FVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEEEEETTTTEEEEEETTSEEEE
T ss_pred             EEeccCCCCceEEEECCCCeEEE
Confidence            76565555556666667776643

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.26  E-value=0.012  Score=66.34  Aligned_cols=80  Identities=10%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             CeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccCeE-EEEEcCCCC-E
Q 001258          839 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALN-V  916 (1113)
Q Consensus       839 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~-~  916 (1113)
                      |.|.-||+.+++.+-..+.... ...=..+- .+.++++|+.||.++.+|..+|+.+-+++--.+... -+.|..||+ +
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC-CCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5788888888888766543221 11112232 566888899999999999999999987754221111 144555776 4


Q ss_pred             EEEE
Q 001258          917 LVSS  920 (1113)
Q Consensus       917 L~s~  920 (1113)
                      ++..
T Consensus       535 v~v~  538 (573)
T d1kb0a2         535 VSVA  538 (573)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.19  E-value=0.22  Score=55.60  Aligned_cols=72  Identities=17%  Similarity=0.146  Sum_probs=44.9

Q ss_pred             CCeEEEEeCCCeEEEEEccCCceeeeeeeeecccC-CeeEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCceeeE
Q 001258          432 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG-GVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYI  504 (1113)
Q Consensus       432 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~-~V~~v~~s~~~~~~~l~s~s------~d~~i~iwd~~~~~~~~~  504 (1113)
                      +.+++.++.|+.|.-.|.++|+.+.....-..+.. .++.--..-++.   ++.+.      ..|.|+-+|+.+|+.+-.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~---vivg~~~~e~~~~G~v~A~Da~TG~~~W~  197 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDK---VIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTE---EEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEECCe---EEEeeccccccccCceEEEECCCCcEEEE
Confidence            45788889999999999999987764322111111 122111111333   44443      248899999999999877


Q ss_pred             ee
Q 001258          505 FE  506 (1113)
Q Consensus       505 ~~  506 (1113)
                      +.
T Consensus       198 ~~  199 (596)
T d1w6sa_         198 AY  199 (596)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.05  E-value=0.17  Score=53.26  Aligned_cols=232  Identities=9%  Similarity=0.015  Sum_probs=117.2

Q ss_pred             EEEEeCCCceEEEeecC-CeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCEEE
Q 001258          756 RLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  834 (1113)
Q Consensus       756 ~~~~s~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~l~  834 (1113)
                      ..++.++|+.++.++.+ ..+.+||.....               |.... .     +   .....-.+.+..+||++++
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~---------------w~~~~-~-----~---~~~r~~~~~~~~~dG~v~v  135 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDS---------------WIPGP-D-----M---QVARGYQSSATMSDGRVFT  135 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTE---------------EEECC-C-----C---SSCCSSCEEEECTTSCEEE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCc---------------ccccc-c-----c---cccccccceeeecCCceee
Confidence            45677888887777665 578888765432               21100 0     0   0122234677788999999


Q ss_pred             EEe-C------CeEEEEECCCCceeeeec--------C-CC-----CCeeEEEEecCCCcEEEEEecCCcEEEEEcccce
Q 001258          835 SAS-G------GKISLFNMMTFKTMATFM--------P-PP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  893 (1113)
Q Consensus       835 ~~s-d------g~i~vwd~~~~~~~~~~~--------~-~~-----~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~  893 (1113)
                      .|+ +      ..+.+||..+.+-...-.        . +.     ..-..+...+ +++++..+..++.+.+++..+..
T Consensus       136 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         136 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCE
T ss_pred             eccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCc
Confidence            886 2      358999987654221100        0 00     0011122233 67777777777778888776654


Q ss_pred             eeeee--cc----cccC--eEEEEE-cCCCCEEEEEeCCC--------cEEEEeCCCCccccccccccCCCCCCCCCCCc
Q 001258          894 VKSKL--KG----HSKR--ITGLAF-SHALNVLVSSGADS--------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  956 (1113)
Q Consensus       894 ~~~~l--~~----h~~~--V~~l~~-s~d~~~L~s~s~D~--------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~  956 (1113)
                      .....  ..    +...  -.++.+ ..+++.++.++...        ...+.++..............  ..+....-.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~~r~~~  292 (387)
T d1k3ia3         215 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN--GLYFARTFH  292 (387)
T ss_dssp             EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTT--CCSSCCBSC
T ss_pred             EeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeecc--ccccccccc
Confidence            32111  10    1111  112222 34667777776432        233333322111111111111  111112234


Q ss_pred             eEEEccCCcEEEEE-cC-----------CeEEEEeCCccceeeccccCCCCCCee-EEEECCCCCEEEEEeC
Q 001258          957 RVQFHQDQIHFLVV-HE-----------TQLAIFETTKLECVKQWVPRESSAPIT-HATFSCDSQLVYACFL 1015 (1113)
Q Consensus       957 ~~~~spdg~~l~~~-~d-----------~~v~v~d~~~~~~~~~~~~~~h~~~v~-~l~~s~dg~~l~s~~~ 1015 (1113)
                      .....+||+.++++ .+           ..+.+||..+.+....-.. .+...-. ...+.+||+.++.|+.
T Consensus       293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~-~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC-CCcccceEEEEECCCCEEEEEeCC
Confidence            56677899988873 21           1478999887764332111 1111112 2345799999999884

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.99  E-value=0.13  Score=55.03  Aligned_cols=246  Identities=11%  Similarity=0.041  Sum_probs=124.3

Q ss_pred             CcEEEEEcCCCCeEEEEEecCC----cEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeE
Q 001258          360 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  435 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  435 (1113)
                      .+..+++||||++++++-+.+|    .|++.|+.+|+.+... +                 .  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~-i-----------------~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV-L-----------------E--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE-E-----------------E--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc-c-----------------c--cccccceEEcCCCCEE
Confidence            3456788999998666655555    6999999999876521 1                 1  0112468999999988


Q ss_pred             EEEeCC----------------CeEEEEEccCCceeeeeeeeeccc--CCeeEEEEcCCCCeeEEEEec-CCCcEEEE--
Q 001258          436 GVAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQLCVITCG-DDKTIKVW--  494 (1113)
Q Consensus       436 as~~~d----------------~~i~iwd~~~~~~~~~~~~l~~h~--~~V~~v~~s~~~~~~~l~s~s-~d~~i~iw--  494 (1113)
                      .-...+                ..|..|.+.++..-. ...+....  ..+..+..+++++.+++.+.+ .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765432                257778877654321 11233332  346778889999963333332 33444444  


Q ss_pred             eCCCCce--------eeEeeccCcCEEEEeeeecCCceEEEEEec---CCcEEEEEcCCCCCe--eeeeCCCCceEEEEE
Q 001258          495 DATNGAK--------QYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSR--VDYEAPGRWCTTMAY  561 (1113)
Q Consensus       495 d~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~  561 (1113)
                      |+.....        ...+.........+.  ... +.+++....   ++.|...++......  ..+..          
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~----------  331 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVT--NEG-TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP----------  331 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEE--EET-TEEEEEECTTCTTCEEEEEETTBCCGGGCEEEEC----------
T ss_pred             eCCCcccccccccceeEeecccccceEEEe--cCC-ceeecccCcccccceeEEecCCCCccccceEEec----------
Confidence            4432211        112222222222222  111 123332222   344555555443221  01111          


Q ss_pred             ccCCCeEEeccccCceeEEEecCCCCEEEEEe-cC--CcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEEC
Q 001258          562 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  638 (1113)
Q Consensus       562 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  638 (1113)
                                .+...+....+...+.+|+... .+  +.|++++..++.........  ...+..+...++...+.....
T Consensus       332 ----------~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~--~~sv~~~~~~~~~~~~~~~~s  399 (430)
T d1qfma1         332 ----------EHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFT  399 (430)
T ss_dssp             ----------CCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEE
T ss_pred             ----------ccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCC--CceEeeccCCCCCCEEEEEEc
Confidence                      1111122222222333455443 44  45888999888766554333  223444555555554443322


Q ss_pred             ----CCcEEEEEcCCCc
Q 001258          639 ----DNGIKILATSDGI  651 (1113)
Q Consensus       639 ----dg~i~iwd~~~~~  651 (1113)
                          -.++.-+|+.++.
T Consensus       400 s~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         400 SFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             CSSCCCEEEEEETTSSS
T ss_pred             CCCCCCeEEEEECCCCC
Confidence                2678888888873

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.19  Score=48.76  Aligned_cols=241  Identities=9%  Similarity=0.095  Sum_probs=142.7

Q ss_pred             EEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCCCCeEEEEeCCC
Q 001258          363 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  442 (1113)
Q Consensus       363 ~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  442 (1113)
                      +.-.+|..+ +||.-+ ..++.|+|+++.+++....+                    ...|..-.|-.+ +.|+... +.
T Consensus        67 sAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~-~~L~lVT-~t  122 (327)
T d1utca2          67 SAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALVT-DN  122 (327)
T ss_dssp             EEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSS-SEEEEEC-SS
T ss_pred             hhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCC-CEEEEEc-CC
Confidence            344567777 566544 56899999999988875322                    236667777644 4555553 45


Q ss_pred             eEEEEEccCCceeeeeeeeeccc----CCeeEEEEcCCCCeeEEEEe------cCCCcEEEEeCCCCceeeEeeccCcCE
Q 001258          443 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAPV  512 (1113)
Q Consensus       443 ~i~iwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~~~~~~~l~s~------s~d~~i~iwd~~~~~~~~~~~~h~~~v  512 (1113)
                      .|.=|++++...  +.+.+..|.    ..|..-..+++.+++ +++|      +-.|.+.+|..+.+ .-+.+.||.+..
T Consensus       123 aVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGhaa~F  198 (327)
T d1utca2         123 AVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF  198 (327)
T ss_dssp             EEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEE
T ss_pred             ceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCEE-EEEeEecCCCceeEEEEEEEeccC-cCccccceeeee
Confidence            699999965432  333455443    357777888999963 3333      12367889986644 456778887666


Q ss_pred             EEEeeeecCCce-EEEEEe---cCCcEEEEEcCCCCC-eeeeeCCCCceEEEEEccCCCeEEeccccCceeEEEecCCCC
Q 001258          513 YSVCPHHKENIQ-FIFSTA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  587 (1113)
Q Consensus       513 ~~~~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  587 (1113)
                      ..+.+....... +++.+.   ..+.+.+-++..... ...+   ......+-|.|+..       ++-...+.+++.-.
T Consensus       199 ~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f---~kk~vdi~fppea~-------~DFPvamqvs~kyg  268 (327)
T d1utca2         199 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQ-------NDFPVAMQISEKHD  268 (327)
T ss_dssp             EEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC---CCEEEECCCCTTCT-------TCCEEEEEEETTTT
T ss_pred             EEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC---cceeEEEECCcccc-------CCcEEEEEeeccCC
Confidence            555433222212 222222   235677887765321 1111   11223444555433       22344566777777


Q ss_pred             EEEEEecCCcEEEEECCCCceEEEEccCCCCCCcCeEEECCCCCEEEEEECCCcEE
Q 001258          588 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  643 (1113)
Q Consensus       588 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  643 (1113)
                      .++..+.-|.|++||+.++.++..-+....  .|...+-..+..-+++...+|.|.
T Consensus       269 iiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         269 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEE
T ss_pred             EEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEE
Confidence            899999999999999999999877654422  344333334433444444556553

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.92  E-value=0.22  Score=55.62  Aligned_cols=81  Identities=11%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             CCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecccccC-eEEEEEcCCCC-
Q 001258          838 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-  915 (1113)
Q Consensus       838 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-  915 (1113)
                      .|.|.-+|+.+++.+-....+.. +..-.++- .+.++++|+.||.++-+|..+|+.+-+++-.... -.-+.|..||+ 
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            36788889999888766653322 22212333 5668888999999999999999999877542221 11256667885 


Q ss_pred             EEEEE
Q 001258          916 VLVSS  920 (1113)
Q Consensus       916 ~L~s~  920 (1113)
                      +++..
T Consensus       543 Yv~i~  547 (582)
T d1flga_         543 YLGVT  547 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.79  E-value=0.14  Score=54.86  Aligned_cols=245  Identities=13%  Similarity=0.099  Sum_probs=129.1

Q ss_pred             CCccEEEEecCCCEEEEEe--CC----eEEEEECCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEecC----------
Q 001258          819 EAVPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD----------  881 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~s--dg----~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~d----------  881 (1113)
                      -.+..+++|||+++++.+-  +|    .|+++|+.+++.+.. +.  ......++|++ |++.|+....+          
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~-D~~~~~Y~~~~~~~~~~~~~~  201 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTH-DGKGMFYNAYPQQDGKSDGTE  201 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECT-TSSEEEEEECCCCSSCCSSSC
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcC-CCCEEEEEEeccccCcccccc
Confidence            3445678999999999764  33    599999999987642 22  11235689999 77766554322          


Q ss_pred             ------CcEEEEEccccee--eeeecc--cccCeEEEEEcCCCCEEEEEe---CCCcEEEEeC--CCCccccc---cccc
Q 001258          882 ------SSIQIYNVRVDEV--KSKLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSS--DGWEKQKN---RFLQ  943 (1113)
Q Consensus       882 ------g~v~iwd~~~~~~--~~~l~~--h~~~V~~l~~s~d~~~L~s~s---~D~~v~iwd~--~~~~~~~~---~~~~  943 (1113)
                            ..|..|.+.+...  ...+..  ....+..+..+.|+++++...   .+....+|-+  ........   ....
T Consensus       202 ~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~  281 (430)
T d1qfma1         202 TSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK  281 (430)
T ss_dssp             CCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred             cccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeE
Confidence                  2688888876422  222232  233466788899999987433   2344455543  32111000   0001


Q ss_pred             cCCCCCCCCCCCceEEEccCCcEEEEE----cCCeEEEEeCCcccee--eccccCCCCCCeeEEEECCCCCEEEEE-eCC
Q 001258          944 IPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYAC-FLD 1016 (1113)
Q Consensus       944 ~~~~~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~D 1016 (1113)
                      ......    .......+.++.+++.+    .++.|...++......  ..+. ..+...+..-.++..+.+|+.. ..|
T Consensus       282 ~~~~~~----~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi-~~~~~~~~~~~~~~~~~~lvl~~~~~  356 (430)
T d1qfma1         282 LIDNFE----GEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV-PEHEKDVLEWVACVRSNFLVLCYLHD  356 (430)
T ss_dssp             EECSSS----SCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEE-CCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             eecccc----cceEEEecCCceeecccCcccccceeEEecCCCCccccceEEe-cccCcceeeeEEEEECCEEEEEEEcC
Confidence            111100    11222223334444433    3456777777654321  2222 2334445544454455555544 455


Q ss_pred             Cc--EEEEecCCCceeeecCCCcccCCCcccCccceEEEEeCCCCCEEEEEeC---CCcEEEEeccCCC
Q 001258         1017 AT--VCVFSAANLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQEPNEFALGLS---DGGVHVFEPLESE 1080 (1113)
Q Consensus      1017 g~--v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~d~~~l~s~~~---Dg~v~vW~~~~~~ 1080 (1113)
                      +.  |+++++.+++......+    +   .+.+..  +...+.+..+.++-++   =.+++-+|+.+++
T Consensus       357 ~~~~l~v~~~~~~~~~~~~~~----~---~~sv~~--~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         357 VKNTLQLHDLATGALLKIFPL----E---VGSVVG--YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TEEEEEEEETTTCCEEEEECC----C---SSEEEE--EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CEeEEEEEECCCCcEEEecCC----C---CceEee--ccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            44  88999998877544321    1   122222  3333333333333322   2689999999987

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00059  Score=50.68  Aligned_cols=55  Identities=16%  Similarity=0.257  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCcc--HHHHHHHhhccCHHHHHHHhcc
Q 001258            5 SRELVFLILQFLDEEKFKETVHKLEQESGFFFN--MKYFEDEVHNGNWDDVEKYLSG   59 (1113)
Q Consensus         5 ~~~v~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~~~~   59 (1113)
                      ++|+.+-|++||..+||.+++.+|.+|+++.++  ...-..-+++-.|..+.++=.+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQkK   63 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKK   63 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHHH
Confidence            578999999999999999999999999998875  5555566888888777666544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.92  E-value=0.11  Score=52.83  Aligned_cols=198  Identities=11%  Similarity=0.151  Sum_probs=114.7

Q ss_pred             CCcEEEEEecCCcEEEEEcccceeeeeecccccCeEEEEEcC------CCCEEEEEeC--C--CcEEEEeCCCCcccccc
Q 001258          871 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNVLVSSGA--D--SQLCVWSSDGWEKQKNR  940 (1113)
Q Consensus       871 d~~~la~g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~L~s~s~--D--~~v~iwd~~~~~~~~~~  940 (1113)
                      +..+++....++-|++||+. |+.++.+.  .++++.|..-.      ...-++.++.  +  .+|.+|.+.........
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            34566666777789999986 77777664  35666665432      2223555552  2  35888887642211100


Q ss_pred             ccccCCC-CCCCCCCCceEEE--ccC-CcEEEE--EcCCeEEEEeCC---cc----ceeeccccCCCCCCeeEEEECCCC
Q 001258          941 FLQIPTG-RTPTAQSDTRVQF--HQD-QIHFLV--VHETQLAIFETT---KL----ECVKQWVPRESSAPITHATFSCDS 1007 (1113)
Q Consensus       941 ~~~~~~~-~~~~~~~i~~~~~--spd-g~~l~~--~~d~~v~v~d~~---~~----~~~~~~~~~~h~~~v~~l~~s~dg 1007 (1113)
                       ...... .......++.+|+  ++. |...+.  ..++.+..|.+.   .+    +.++.+..   ...+..+.+.++.
T Consensus       116 -~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~  191 (353)
T d1h6la_         116 -ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEY  191 (353)
T ss_dssp             -CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred             -ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCC
Confidence             100000 0011124677777  554 544333  367888877653   22    34555543   5678999999999


Q ss_pred             CEEEEEeCCCcEEEEecC-----CCceeeecCCCcccCCCcccCccceEEEEeCC-CCCEEEEEeCCCcEEEEeccCCC
Q 001258         1008 QLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESE 1080 (1113)
Q Consensus      1008 ~~l~s~~~Dg~v~vwd~~-----~~~~~~~~~~~~~~~~gh~~~v~~i~~~~~p~-d~~~l~s~~~Dg~v~vW~~~~~~ 1080 (1113)
                      ..|+.+-.+.-|..++++     .+..+....     .....+.+..+++-..++ +|.+|+|.-.|++..++|..+..
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~-----g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~  265 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-----GRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQN  265 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECS-----SSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTC
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeeccc-----CccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCc
Confidence            999999887656555543     122222211     112356777776665542 45566777778999999987653

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.41  E-value=1.6  Score=43.95  Aligned_cols=200  Identities=9%  Similarity=0.141  Sum_probs=112.1

Q ss_pred             cCCCEEEEEe-CCeEEEEECCCCceeeeecCCCCCeeEEEEec----C-CCcEEEEEe--cCC--cEEEEEccc-ceeee
Q 001258          828 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGM--DDS--SIQIYNVRV-DEVKS  896 (1113)
Q Consensus       828 ~~~~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~----~-d~~~la~g~--~dg--~v~iwd~~~-~~~~~  896 (1113)
                      |+..+++... .+.|.+||++ |+.++.+.  .+.+..+..-.    . ...-+++++  .++  +|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3445555555 5569999995 67776664  34555554431    0 122344554  223  577887753 22233


Q ss_pred             eeccc-------ccCeEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCCCcc--ccccccccCCCCCCCCCCCceEEEccC
Q 001258          897 KLKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD  963 (1113)
Q Consensus       897 ~l~~h-------~~~V~~l~~--s~d-~~-~L~s~s~D~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~spd  963 (1113)
                      .+...       ...+.++|+  ++. |. +++....+|.+..|.+.....  ...........    ...+..|++.++
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCC
Confidence            33221       134777887  554 44 466677889999998743221  11112221111    136789999999


Q ss_pred             CcEEEEE-cCCeEEEEeCC-----ccceeeccccCCCCCCeeEEEEC--CCCC-EEEE-EeCCCcEEEEecCC-Cceeee
Q 001258          964 QIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATFS--CDSQ-LVYA-CFLDATVCVFSAAN-LKLRCR 1032 (1113)
Q Consensus       964 g~~l~~~-~d~~v~v~d~~-----~~~~~~~~~~~~h~~~v~~l~~s--~dg~-~l~s-~~~Dg~v~vwd~~~-~~~~~~ 1032 (1113)
                      ...|.++ .+..+..++..     .+..+...........+..|++-  .++. ||++ .-.|.+..|||..+ .+.+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            8888887 44556656543     12222222111235677777763  3433 5444 44578899999876 466666


Q ss_pred             cC
Q 001258         1033 IN 1034 (1113)
Q Consensus      1033 ~~ 1034 (1113)
                      |.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.028  Score=49.21  Aligned_cols=67  Identities=16%  Similarity=0.278  Sum_probs=55.8

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhccCC
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYG  134 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~  134 (1113)
                      ++.. ++|+++-+.||+|+..|...+|..|+++.-.-+...+.+.+++|..+....++..++....+.
T Consensus        41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r  107 (149)
T d2nxpa1          41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFR  107 (149)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGC
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHh
Confidence            4444 999999999999999999999999999877667777889999999988887777666555443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.60  E-value=4.2  Score=40.84  Aligned_cols=191  Identities=12%  Similarity=0.090  Sum_probs=99.5

Q ss_pred             CcEEEEEcCCCCeEEEEEec-----------CCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEE
Q 001258          360 SPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  428 (1113)
Q Consensus       360 ~V~~~~~spdg~~ll~~gs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  428 (1113)
                      ....++..|||..++++|-.           .|.|.++|+.+.+.... .+.+-   ..  ......+..|  .+. +.-
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~~---~~--~~~~~~f~Ph--Gi~-l~~  106 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEII---GN--TLDISSFNPH--GIS-TFI  106 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEEE---CS--SSCGGGCCEE--EEE-EEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEec---CC--CCCCcceecc--cee-EEE
Confidence            34578889999866665421           37888888876543321 11100   00  0000112223  221 222


Q ss_pred             cCCCC-eEEEEe---CCCeEEEEEccCCc-eeeeeeeee-cccCCeeEEEEcCCCCeeEEEEec--C-------------
Q 001258          429 SPDGS-LFGVAY---SRHIVQIYSYHGGD-EVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG--D-------------  487 (1113)
Q Consensus       429 spdg~-~las~~---~d~~i~iwd~~~~~-~~~~~~~l~-~h~~~V~~v~~s~~~~~~~l~s~s--~-------------  487 (1113)
                      .+||+ +|++..   ...+|.+|++.... .+.-..++. ......++|++..++.  +++|-.  .             
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~  184 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLG  184 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTT
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhc
Confidence            45676 455543   45679999886443 232222332 2234578999999998  667621  1             


Q ss_pred             CCcEEEEeCCCCceeeEeeccCcCEEEEeeeecCCceEEEEEecCCcEEEEEcCCCCCeee--eeCCCCceEEEEEcc
Q 001258          488 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD--YEAPGRWCTTMAYSA  563 (1113)
Q Consensus       488 d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~v~~~~~s~  563 (1113)
                      -.+..+|....+.. ......-..-+.++++++.+ .++++-+..+.|+.|++........  ...-....-.+.+.+
T Consensus       185 ~~~g~v~~~~~~~~-~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~  260 (340)
T d1v04a_         185 LAWSFVTYYSPNDV-RVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDP  260 (340)
T ss_dssp             CCCEEEEEECSSCE-EEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECT
T ss_pred             CCceeEEEEcCCce-EEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEec
Confidence            12344454444433 33333345677888765442 3455666788899999876443321  111233445566654

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=1.5  Score=43.04  Aligned_cols=217  Identities=12%  Similarity=0.078  Sum_probs=100.2

Q ss_pred             CeEEEEECCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEecC---------CcEEEEEcccceee--eeecccccCe
Q 001258          839 GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVK--SKLKGHSKRI  905 (1113)
Q Consensus       839 g~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---------g~v~iwd~~~~~~~--~~l~~h~~~V  905 (1113)
                      ..+.+||..+.+-  +..+...... .+++..  ++++++.|+..         ..+.+||..+.+..  ..+..-...-
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~-~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSG-LAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-CEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCccce-eEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            4588999987643  2223222222 222222  56777777632         36778887764322  2221111111


Q ss_pred             EEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-Ec-----CCe
Q 001258          906 TGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH-----ETQ  974 (1113)
Q Consensus       906 ~~l~~s~d~~~L~s~s~D~~-----v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~-----d~~  974 (1113)
                      .++.  .+++.++.++.++.     ...++..+..-....  .....     ..-..+... ++..++. +.     ...
T Consensus        96 ~~~~--~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----r~~~~~~~~-~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLTR-----RIGVGVAVL-NRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECC--CCSSC-----CBSCEEEEE-TTEEEEECCBCSSCBCCC
T ss_pred             eccc--cceeeEEecceecccccceeeeeccccCcccccc--ccccc-----cccceeeee-eecceEecCcccccccce
Confidence            1222  25666666654443     344665553221110  00100     011222222 3444444 32     245


Q ss_pred             EEEEeCCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCC-----CcEEEEecCCCceeeecCCCcccCCCcccCccc
Q 001258          975 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSNVHP 1049 (1113)
Q Consensus       975 v~v~d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~D-----g~v~vwd~~~~~~~~~~~~~~~~~~gh~~~v~~ 1049 (1113)
                      +..||..+.+....-.. .....-.+.+. .++.+++.|+.+     .....+|..+.+....-.    .+..   ....
T Consensus       166 ~~~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~---r~~~  236 (288)
T d1zgka1         166 AECYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHR---RSAL  236 (288)
T ss_dssp             EEEEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSC---CBSC
T ss_pred             EEEeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCc---ccce
Confidence            78888877654432211 11111122222 345566666544     346777877765543211    1111   1111


Q ss_pred             eEEEEeCCCCCEEEEEeCCC-----cEEEEeccCCC
Q 001258         1050 LVIAAHPQEPNEFALGLSDG-----GVHVFEPLESE 1080 (1113)
Q Consensus      1050 i~~~~~p~d~~~l~s~~~Dg-----~v~vW~~~~~~ 1080 (1113)
                       .++..  ++++++.|+.++     .|.+||+.+.+
T Consensus       237 -~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         237 -GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             -EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             -EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence             12222  577888887655     37889998866

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=91.90  E-value=0.086  Score=44.78  Aligned_cols=63  Identities=14%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhc
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS  131 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  131 (1113)
                      ++.. ++|+++-+.||||+.+|..++|..|+++.-..+. ...+.+++|+.+....++..++...
T Consensus        23 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~   85 (131)
T d2j4ba1          23 DLLP-LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAY   85 (131)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHH
Confidence            4444 9999999999999999999999999997655443 3677888888877766666555443

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.50  E-value=4.6  Score=40.96  Aligned_cols=184  Identities=11%  Similarity=0.104  Sum_probs=105.8

Q ss_pred             CCccEEEEecCCCEEEEEeCCeEEEEECCCC---------ceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEc
Q 001258          819 EAVPCFALSKNDSYVMSASGGKISLFNMMTF---------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  889 (1113)
Q Consensus       819 ~~v~~l~~s~~~~~l~~~sdg~i~vwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~  889 (1113)
                      ....-+++++...++++|+...+.|..+..-         ......+..-..|..++|+. +  .|++. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEEe
Confidence            3456789998888888888767888875321         00011111123688999986 3  45544 4567888887


Q ss_pred             ccceeeeeecccccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE
Q 001258          890 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  969 (1113)
Q Consensus       890 ~~~~~~~~l~~h~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~  969 (1113)
                      .+-........-..++..+.+.|.  .++....++.+.++++..+....... ....  ....+.+.+++|++.|+.+++
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~-~v~~--~~~~~~~~~v~ws~kgkq~v~  187 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ-NVTS--FDVTNSQLAVLLKDRSFQSFA  187 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE-SEEE--EEECSSEEEEEETTSCEEEEE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC-Ccce--EEecCCceEEEEeCCcEEEEE
Confidence            664333333334556788888765  56667778999999998864321100 0000  000134677888888888877


Q ss_pred             EcCCeEEEE-eCCccceeeccccCCCCCCeeEEEECCCCCEEEEE
Q 001258          970 VHETQLAIF-ETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC 1013 (1113)
Q Consensus       970 ~~d~~v~v~-d~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1013 (1113)
                      +..+...+. ++.....+..  .......|.+|.|-.+..++++-
T Consensus       188 ~~g~~~q~k~~i~~~~~~~~--p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         188 WRNGEMEKQFEFSLPSELEE--LPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EETTEEEEEEEECCCHHHHT--SCTTTSEEEEEEESSSSEEEEEE
T ss_pred             eCCCceeeccCCCCccccCC--CcCCCcceeEEEEecCceEEEEE
Confidence            644433321 1111111111  01234578899998877777654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.68  E-value=9.1  Score=38.17  Aligned_cols=77  Identities=14%  Similarity=0.173  Sum_probs=44.2

Q ss_pred             ceEEEEEcCCCCeEEEEeC------------CCeEEEEEccCCceeeeeeeeeccc-----CCeeEEEE--cCCCCeeEE
Q 001258          422 SVNRVIWSPDGSLFGVAYS------------RHIVQIYSYHGGDEVRQHLEIDAHV-----GGVNDIAF--SHPNKQLCV  482 (1113)
Q Consensus       422 ~V~~l~~spdg~~las~~~------------d~~i~iwd~~~~~~~~~~~~l~~h~-----~~V~~v~~--s~~~~~~~l  482 (1113)
                      .-..|+..|||..+++++.            .|.|.++|+++.+.......+.+..     -.-..+..  .++|+. +|
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L  114 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YL  114 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EE
Confidence            3446888999988877642            4889999998765433222222211     11223332  456664 33


Q ss_pred             EEe---cCCCcEEEEeCCCC
Q 001258          483 ITC---GDDKTIKVWDATNG  499 (1113)
Q Consensus       483 ~s~---s~d~~i~iwd~~~~  499 (1113)
                      +..   ....+|.++++...
T Consensus       115 ~vvnH~~~~~~ieif~~~~~  134 (340)
T d1v04a_         115 LVVNHPGSSSTVEVFKFQEE  134 (340)
T ss_dssp             EEEECSTTCCEEEEEEEETT
T ss_pred             EEEeccCCCceeEEEEEeCC
Confidence            333   34567888887644

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.63  E-value=4  Score=41.36  Aligned_cols=148  Identities=9%  Similarity=0.055  Sum_probs=87.8

Q ss_pred             ceEEEEEeCCCceEEEeecCCeEEEEEccccccCCCCceeeeecCeecCCCCccccccccCCCCCCCCccEEEEecCCCE
Q 001258          753 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  832 (1113)
Q Consensus       753 ~i~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~lw~~~~g~~~~~~~~~~~~~~~v~~l~~s~~~~~  832 (1113)
                      ...-+++++....+++++.++ +.|.....-......            ...+.......    .-..|..++|+.|  .
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~------------~~~~~~~~~~~----~ip~v~~vafs~d--~   98 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITS------------DSTPLTFKWEK----EIPDVIFVCFHGD--Q   98 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHS------------SSCCCCCSEEE----ECTTEEEEEEETT--E
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhc------------cCCCCcceecc----CCCCeEEEEeeCC--E
Confidence            455678888877777777775 556554321000000            00000000000    1125788899755  5


Q ss_pred             EEEEeCCeEEEEECCCCceeeeecCCCCCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeeeeecc-----cccCeEE
Q 001258          833 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITG  907 (1113)
Q Consensus       833 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~~  907 (1113)
                      +++..++.+..++................+..+.++|   ..++....+|.+.++++..++......+     -++.+.+
T Consensus        99 l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~  175 (381)
T d1xipa_          99 VLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLA  175 (381)
T ss_dssp             EEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEE
T ss_pred             EEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceE
Confidence            7777788899998876554444443445677787776   3566677899999999988754322211     2355778


Q ss_pred             EEEcCCCCEEEEEeC
Q 001258          908 LAFSHALNVLVSSGA  922 (1113)
Q Consensus       908 l~~s~d~~~L~s~s~  922 (1113)
                      ++|++.|..++++..
T Consensus       176 v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         176 VLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEETTSCEEEEEEET
T ss_pred             EEEeCCcEEEEEeCC
Confidence            888887777777643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.89  E-value=5.1  Score=42.11  Aligned_cols=114  Identities=9%  Similarity=0.061  Sum_probs=61.9

Q ss_pred             ccCeEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccC---CcEEEEE---c----
Q 001258          902 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---QIHFLVV---H----  971 (1113)
Q Consensus       902 ~~~V~~l~~s~d~~~L~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spd---g~~l~~~---~----  971 (1113)
                      -...++|+|.|||++|++--.+|.|++++..+++.....-+...............++|+|+   ..++..+   .    
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            35678999999999998775678999998877654321111111111111135678999985   3344331   1    


Q ss_pred             -C----Ce--EEEEeCCccc-------eeeccccCCCCCCeeEEEECCCCCEEEEEeC
Q 001258          972 -E----TQ--LAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFL 1015 (1113)
Q Consensus       972 -d----~~--v~v~d~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 1015 (1113)
                       +    ..  +..+......       .+..............|.|.|||.+.++.++
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             0    11  2223322211       1111111111234578999999988777664

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=89.49  E-value=6.9  Score=35.00  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=99.6

Q ss_pred             EEEEECCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEecCCcEEEEEcccceeee--eeccc-------ccCeEEEEE
Q 001258          841 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF  910 (1113)
Q Consensus       841 i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~v~iwd~~~~~~~~--~l~~h-------~~~V~~l~~  910 (1113)
                      |.+-++.....-..+.... -.|.++++.  |.+.+++|+....+.+|-+..|++..  .+.+.       .+-|..+.+
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            5555655322333343333 446666664  77899999999999999988876432  22221       223444443


Q ss_pred             c-CCCCEEEEEeC-CCcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEEE----cCCeEEEEeCCccc
Q 001258          911 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLE  984 (1113)
Q Consensus       911 s-~d~~~L~s~s~-D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~~----~d~~v~v~d~~~~~  984 (1113)
                      - +..+-++++.- .|.++|++-..                   +.+....++++.+. ++.    .+....-+|.+.++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpke-------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGE-------------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSS-------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCC-------------------CcccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence            2 33334555554 67777776655                   24556666777766 332    22333356887666


Q ss_pred             eeeccccCC-----CCCCeeEEEECCCCCEEEEEeCCCcEEEEecCCCceee
Q 001258          985 CVKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1031 (1113)
Q Consensus       985 ~~~~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~Dg~v~vwd~~~~~~~~ 1031 (1113)
                      .-+.-.+..     ....|+-+-+.||+++++.+-.||.-++|.  .|+.+.
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            543322110     133566667999999999999999999987  456553

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=88.29  E-value=0.096  Score=44.64  Aligned_cols=63  Identities=19%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             ccchhhHHHHHHHHHHHHHhcCCHHHHHHHHHhhcccccccChHHHHHHHHHhcccccccchhhc
Q 001258           67 RYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLS  131 (1113)
Q Consensus        67 ~~~~~~~~~l~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  131 (1113)
                      ++.. ++|+++-+.||||+..+. .+|..|+++.-.-+...+.+.+++|..+....+...++...
T Consensus        25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~   87 (134)
T d2j49a1          25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVAS   87 (134)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHH
Confidence            5544 999999999999999875 68999999776666555667777777777666666555443

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.35  E-value=8.5  Score=37.10  Aligned_cols=175  Identities=11%  Similarity=0.024  Sum_probs=79.4

Q ss_pred             eEEEEECCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEecCCc-----EEEEEcccceeeeee--cccccCeEEEEE
Q 001258          840 KISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSS-----IQIYNVRVDEVKSKL--KGHSKRITGLAF  910 (1113)
Q Consensus       840 ~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~-----v~iwd~~~~~~~~~l--~~h~~~V~~l~~  910 (1113)
                      .+.+||..+......  +........+ +. . ++++++.|+.++.     +..+|..+..-...-  .........+. 
T Consensus        71 ~~~~yd~~~~~w~~~~~~p~~r~~~~~-~~-~-~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-  146 (288)
T d1zgka1          71 ALDCYNPMTNQWSPCAPMSVPRNRIGV-GV-I-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-  146 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBTCEE-EE-E-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-
T ss_pred             hhhhcccccccccccccccceecceec-cc-c-ceeeEEecceecccccceeeeeccccCccccccccccccccceeee-
Confidence            477888776443322  1111111222 22 2 5667777665543     444666554322111  11111111222 


Q ss_pred             cCCCCEEEEEeCC-----CcEEEEeCCCCccccccccccCCCCCCCCCCCceEEEccCCcEEEE-EcC-----CeEEEEe
Q 001258          911 SHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE-----TQLAIFE  979 (1113)
Q Consensus       911 s~d~~~L~s~s~D-----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~spdg~~l~~-~~d-----~~v~v~d  979 (1113)
                       .++..++.++.+     ..+..||..+.+-........  .     ......+ ..++..++. +.+     .....+|
T Consensus       147 -~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~--~-----~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~  217 (288)
T d1zgka1         147 -LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT--I-----RSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYD  217 (288)
T ss_dssp             -ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS--C-----CBSCEEE-EETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             -eeecceEecCcccccccceEEEeecccccccccccccc--c-----ccccccc-ceeeeEEEecCccccccccceeeee
Confidence             234555555543     346778876643221111100  0     1112222 233444444 332     3567788


Q ss_pred             CCccceeeccccCCCCCCeeEEEECCCCCEEEEEeCCCc-----EEEEecCCCce
Q 001258          980 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-----VCVFSAANLKL 1029 (1113)
Q Consensus       980 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~Dg~-----v~vwd~~~~~~ 1029 (1113)
                      ..+.+....-.. .....-.+++ ..++++++.|+.++.     |.+||+.+.+-
T Consensus       218 ~~~~~~~~~~~~-p~~r~~~~~~-~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W  270 (288)
T d1zgka1         218 VETETWTFVAPM-KHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTW  270 (288)
T ss_dssp             TTTTEEEECCCC-SSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred             ecceeeecccCc-cCcccceEEE-EECCEEEEEecCCCCeecceEEEEECCCCEE
Confidence            776655433211 1111112233 237888888876543     78899987653

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=81.23  E-value=18  Score=32.25  Aligned_cols=211  Identities=13%  Similarity=0.148  Sum_probs=100.9

Q ss_pred             CCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcC-CCCeEEEE------eCC
Q 001258          369 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVA------YSR  441 (1113)
Q Consensus       369 dg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~------~~d  441 (1113)
                      ++..|++++...|.|.++-+..++.+..                      ...+|....--. .=.++..+      -.-
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkL----------------------tkePI~~~~~Pk~~ldfi~f~RDV~kGkE~   81 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKL----------------------NREPINSVLDPHYGVGRVILVRDVSKGAEQ   81 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEEC----------------------CSSCCSEECEECTTBSEEEEEEECSTTSCC
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEE----------------------ecccccCcCCCccCcceEEEEeehhcCcce
Confidence            4445788998999999999988876642                      111222211100 01111111      111


Q ss_pred             CeEEEEEccC-CceeeeeeeeecccCCeeEEEEcCCCCeeEEEEecCCCcEEEEeCCCCceee--Eeec-------cCcC
Q 001258          442 HIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEG-------HEAP  511 (1113)
Q Consensus       442 ~~i~iwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~~~~~~~l~s~s~d~~i~iwd~~~~~~~~--~~~~-------h~~~  511 (1113)
                      ..|.+-+++. |+..+    +.. ..+|.-+....|++. +..+|+......+|-++.|+...  .+.+       ...-
T Consensus        82 Hai~~~Nlk~~GEE~~----i~s-pk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~  155 (313)
T d2hu7a1          82 HALFKVNTSRPGEEQR----LEA-VKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDL  155 (313)
T ss_dssp             EEEEEEETTSTTCEEE----CTT-SCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTE
T ss_pred             eeEEEEccCCCCeeeE----ecC-CceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCe
Confidence            2344444442 22111    221 222444444445665 56666666667788877776432  2221       1223


Q ss_pred             EEEEeeeecCCceEEEEEec-CCcEEEEEcCCCCCeeeeeCCCCceE----------EEEEccCCCe---------EEec
Q 001258          512 VYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCT----------TMAYSADGTR---------TYQG  571 (1113)
Q Consensus       512 v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~v~----------~~~~s~~~~~---------~~~~  571 (1113)
                      |..+.+.. ++..-++++.. .|.+++++...+.....+...+..|.          -+.+.+....         -+..
T Consensus       156 I~G~g~~~-g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~s  234 (313)
T d2hu7a1         156 IAGLGFFG-GGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSS  234 (313)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHH
T ss_pred             EEEEeeec-CCcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccccee
Confidence            33333322 22233555555 78888887654333222222222221          1122222110         0111


Q ss_pred             cccCceeEEEecCCCCEEEEEecCCcEEEEECCCCceEE
Q 001258          572 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT  610 (1113)
Q Consensus       572 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  610 (1113)
                      ...-.+..+-+.|+++.++.+-.||.-.+|.  +|+.+.
T Consensus       235 y~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         235 YRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             HCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             ecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            2223455566788888778888888888876  455443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.82  E-value=14  Score=38.44  Aligned_cols=64  Identities=16%  Similarity=0.125  Sum_probs=41.5

Q ss_pred             cCCCCcEEEEEcCCCCeEEEEEecCCcEEEEecCCcceeEeeeeeeeccCCCCcccccccccCCCcceEEEEEcCC
Q 001258          356 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  431 (1113)
Q Consensus       356 ~h~~~V~~~~~spdg~~ll~~gs~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  431 (1113)
                      ..-+..++|+|.|||+ |+++--..|.|++++..+++......+.  +        .. ....-.+....|+|+|+
T Consensus        24 ~~L~~P~~la~~pdg~-llVter~~G~i~~v~~~~g~~~~i~~~~--~--------~~-~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          24 SNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVP--E--------IV-NDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECT--T--------CC-CCTTSSCSEEEEEECTT
T ss_pred             CCCCCceEEEEeCCCe-EEEEEecCCEEEEEECCCCcEeecccCC--c--------cc-cccCCCCceeeEEeCCC
Confidence            3457889999999999 5766545799999998877654321110  0        00 01122357889999984