Citrus Sinensis ID: 001263

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110--
MAFPQSLLHLKQQRQHHEEEEHLEEEEENDDDDDVLHKNAGTPIRYASLDRVYSACVTATSSTANGGSSNVMSKKIKASRKLCRPPIVNVYTRRTKRPRRRQQHSSFLESLLGAREAEAERVDHSLAVKHEICEFENKIVGNDNHHDDHHDLRVLKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNNSSSNNNKINNINLKRKKTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELIDWRGD
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccHHHHHHHHccccccccEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccEEEEccccccccEEEEEEccccccEEEEEccccccEEEEccccEEEEEcHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccEEEEEEcccccccEEEEcccccccccccccccccccEEEEEEccccEEEEEcccEEEHHHHHcccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccEEEEEccccccccccccccccccccccEEEEEEEEcccccccccccEEEEccccccccccEEEEccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEcccccccccccccccccccccEEccccccccccccccccccccccccccccccccEEEcccHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccccHHcccccccccEEEEEccccccHHHHHHHHHHHHHcccccccEEEEcccccEEEccccccHHHHcccccccccEEEEEEEcccEEEEEEEcccccccccccccccccccccccccccccccccccccccHHHHcccEEEEccccccccccc
cccHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccEEEEcHHEEEEccccccccccccccccccccEccccccccccccEEEEcccccccccccccccccccHHHHHHcccccccccEEEEEcHEcccccccccccccccHHHHHHHHHHcccccHHHHHcccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHcccEEEEccccHHccccEEEEEccccccEEEEEccccccHEEEcccEEEEEEcHHHHHHHHHcHccccHccccccHHHHHHHHHHHHHHcccccccEEEEEEcccccccEEEEEHHHccccccccccccccEEEEEEEcccccHEEcHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHcccccccccccccccccccHHHHHHHHHHccccEEEccEEEEEcccEEEcHHHHcccccccccccEEEEEEEEccccccccEEEEEEccccccccccEEEEEccccccccccccHHHHHcccccHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEEcccccccccEEEEEccccEEEEHHHcccccccccccEHHHHcccccccccccEEEcccccccccccccccEEEEEEEEEcccEEccccccEccccccccccHHHHHHHHHHHHcccccEEEEccccccEEHHHHHHHHcccEEEEEccccccEEEEEcccccEEEEEEEEcHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHHHHHHHHEccccccccccHEEHccHccccEEEEEcccEccccHHHHHHHHHHHHHccccEEEEEEcccEEEEccccccHHHEEccccccccEEEEEEEccccEEEEEEEEccccccEEEEEEccccccccccccccccccccEEccccHcccccEEEEcHHHHHccccc
mafpqsllHLKQQRQHHeeeehleeeeendddddvlhknagtpiryasLDRVYSACVTatsstanggssnvmsKKIKasrklcrppivnvytrrtkrprrrqQHSSFLESLLGAREAEAERVDHSLAVKHEICEFenkivgndnhhddhhDLRVLKKrkrfgsseLVKLGIDSISSvfssfdrprlrdcrnnnsssnnnkinninlkrkktdsnskkilsvsptaKRWVRLCcdgvdpkafiglqckvywpldadwysgfvvgydsesnrhhvkyvdgdeedliLSNERIKFYISQEEMDCLKLSfsinnvdndgydyDEMVVLAASlddcqelepgdIIWAKLTGHAMWPAIVVdesligdykglnkisggrsipvqffgthdfARINVKQVISFLKGLLSsfhlkckkprftQSLEEAKVYLSEQKLPRRMLQLQNAIraddgenswsqdegslgsgencfkderlqgtlgsigispyvfgdlqilslgkivkdseyfqddrfiwpegyTAVRKFtsladprvcnsykmeVLRDteskirplfrvtldngeqftgstpstcwSKICMKIregqnntsddfsaEGAAEKisesgsdmfgfsnPEVMKLILGltksrptsksslckltskyrdlpggyrpvrvdwkdldkcsvchmdeeyqnnlflqcdkcrmmvharcygelepvnGVLWLCnlcrpgapeppppcclcpvvggamkpttdGRWAHLACAiwipetcltdvkrmepidglnrVSKDRWKLLCSICgvsygaciqcsnttcrvayhpLCARAAGlcvelededrlnllsldeddeDQCIRLLSFCKkhkqplndrlavDERLVQVTRRccdyippsnpsgcarsepynyfgrrgrkePEALAAASLKRLFvenqpylvggycqnglsgntlpsIRVIgskfsfslhrdapnflsMADKYKHMKETFRKRLAfgksgihgfgifakhphragdMVIEYTGElvrpsiadrREHFIYNSlvgagtymfridderviDATRAGSIAHLinhscepncysrvisvngdeHIIIFAKRDIKQWEELTYDYRFFSIDEQLAcycgfprcrgvvndtEAEEQVAKLYaprselidwrgd
mafpqsllhlkqqrQHHEEEEhleeeeendddddVLHKNAGTPIRYASLDRVYSACVTAtsstanggssnvmskkikasrklcrppivnvytrrtkrprrrqqhssfLESLLGAREAEAERVDHSLAVKHEICEFENKivgndnhhddhHDLRVLKKrkrfgsselvklgidsissvfssfdrprlrdcrnnnsssnnnkinninlkrkktdsnskkilsvsptakrwVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKyvdgdeedlilSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIraddgenswsqdegslgSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRkftsladprvcnSYKMevlrdteskirplfrvtldngeqftgstpstcWSKICMKIREGQNNTSDDFSAEGAAEKISesgsdmfgFSNPEVMKLILGLtksrptsksslckltskyrdlpggyrpvrvdwkDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPetcltdvkrmepidglnrvskDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFckkhkqplndrlavdeRLVQVTRRCCDyippsnpsgcarsePYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEqvaklyaprselidwrgd
MAFPQSllhlkqqrqhheeeehleeeeendddddvlhKNAGTPIRYASLDRVYSACvtatsstanggssnvMSKKIKASRKLCRPPIVNVYtrrtkrprrrQQHSSFLESLLGAREAEAERVDHSLAVKHEICEFENKIVGndnhhddhhdLRVLKKRKRFGSSELVKLGidsissvfssfdRPRLRDCRnnnsssnnnkinninLKRKKTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPtsksslckltskYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLcrpgapeppppcclcpVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVelededrlnllsldeddedQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELIDWRGD
*****************************************TPIRYASLDRVYSACVTA**********************LCRPPIVNVY********************************HSLAVKHEICEFENKIVGNDNHHDDHHDLRVLKKRKRFGSSELVKLGIDSISSVF******************************************VSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYL*************************************CFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKI**********************************VMKLILGL**********LCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIP************YNYFG********ALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYA***********
***********************************LHKNAGTPIRYASLDRVYSA***************************************************************************************************************************************************************************RWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFS******DGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIG*********GGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKL*************************************************PYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNS*************RPLFRVTLDNG****GSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGL****************************RVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDR************QCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFGRRGRKEPEALAAA*************************************SF**HRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQ***LYAPRSELIDW***
MAFPQSLLH***********************DDVLHKNAGTPIRYASLDRVYSACVTATSSTANGGSSNVMSKKIKASRKLCRPPIVNVYTRR************FLESLLGAREAEAERVDHSLAVKHEICEFENKIVGNDNHHDDHHDLRVLKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNNSSSNNNKINNINLKRKKTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRAD***************GENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELIDWRGD
**F*******KQQRQH**********EENDDDDDVLHKNAGTPIRYASLDRVYSAC********************KASRKLCRPPIVNVYTRR***********SFLESLLGAREAEAERVDHSLAVKHEICEFEN*****************LKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNN******************************TAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIR********************CFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKH***********************************************K*PEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELIDWR**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAFPQSxxxxxxxxxxxxxxxxxxxxxxxxDDDDVLHKNAGTPIRYASLDRVYSACVTATSSTANGGSSNVMSKKIKASRKLCRPPIVNVYTRRTKRPRRRQQHSSFLESLLGAREAEAERVDHSLAVKHEICEFENKIVGNDNHHDDHHDLRVLKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNNSSSNNNKINNINLKRKKTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKSSLCKLTSKYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELIDWRGD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1112 2.2.26 [Sep-21-2011]
P0CB221083 Histone-lysine N-methyltr yes no 0.953 0.978 0.632 0.0
Q9C5X41062 Histone-lysine N-methyltr no no 0.918 0.961 0.593 0.0
Q8GZ421043 Histone-lysine N-methyltr no no 0.398 0.424 0.338 1e-66
Q9SUE71027 Histone-lysine N-methyltr no no 0.379 0.410 0.336 9e-65
Q247423828 Histone-lysine N-methyltr N/A no 0.173 0.050 0.430 6e-42
P206593726 Histone-lysine N-methyltr yes no 0.173 0.051 0.426 6e-41
Q031643969 Histone-lysine N-methyltr yes no 0.138 0.038 0.5 3e-38
P552003966 Histone-lysine N-methyltr yes no 0.138 0.038 0.5 4e-38
O085502713 Histone-lysine N-methyltr no no 0.138 0.056 0.5 4e-37
Q9UMN62715 Histone-lysine N-methyltr no no 0.138 0.056 0.5 7e-37
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana GN=ATX2 PE=2 SV=1 Back     alignment and function desciption
 Score = 1309 bits (3388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1097 (63%), Positives = 815/1097 (74%), Gaps = 37/1097 (3%)

Query: 24   EEEEENDDDDDVLHKNAG-TPIRYASLDRVYSACVTATS---STANGGSSNVMSKKIKAS 79
            EEE E+      LH +A   P+RYASL+ VYS   +++S    TA G    V + K+  S
Sbjct: 10   EEEGEDTQIKTELHDHAADNPVRYASLESVYSVSSSSSSLCCKTAAGSHKKVNALKLPMS 69

Query: 80   RKL-----CRPPIVNVYTRRTKRPRRRQQHSSFLESLLGAREAEAERVDHSLAVKHEICE 134
                     RP IV+VY RR +R RRR++  SFLE  +   E   ER D    VK E  E
Sbjct: 70   DSFELQPHRRPEIVHVYCRRKRRRRRRRE--SFLELAILQNEG-VERDDR--IVKIESAE 124

Query: 135  FENKIVGNDNHHDDHHDLRVLKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNNS 194
             +++    +         +  +K++R G+ EL+KLG+DS +   S+   P LR CR    
Sbjct: 125  LDDEKEEENK--------KKKQKKRRIGNGELMKLGVDSTTLSVSA--TPPLRGCRIKAV 174

Query: 195  SSNNNKINNINLKRKKTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDA 254
             S N +  +   KR  T  N +K+++ S TAK+WVRL  DGVDPK FIGLQCKV+WPLDA
Sbjct: 175  CSGNKQDGSSRSKRN-TVKNQEKVVTASATAKKWVRLSYDGVDPKHFIGLQCKVFWPLDA 233

Query: 255  DWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDND 314
             WY G +VGY+ E+  H VKY DGD E+L L  E+IKF IS+++M+ L + F  N+V  D
Sbjct: 234  VWYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLISRDDMELLNMKFGTNDVVVD 293

Query: 315  GYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLN-KISGGR 373
            G DYDE+V+LAAS ++CQ+ EP DIIWAKLTGHAMWPAI+VDES+I   KGLN KISGGR
Sbjct: 294  GQDYDELVILAASFEECQDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNKISGGR 353

Query: 374  SIPVQFFGTHDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRM 433
            S+ VQFFGTHDFARI VKQ +SFLKGLLS   LKCK+PRF +++EEAK+YL E KLP RM
Sbjct: 354  SVLVQFFGTHDFARIQVKQAVSFLKGLLSRSPLKCKQPRFEEAMEEAKMYLKEYKLPGRM 413

Query: 434  LQLQNAIRADDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKI 493
             QLQ     D  E   S +E S  SG++  KD  +      +G   +  GDLQI++LG+I
Sbjct: 414  DQLQKVADTDCSERINSGEEDSSNSGDDYTKDGEVWLRPTELGDCLHRIGDLQIINLGRI 473

Query: 494  VKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGE 553
            V DSE+F+D +  WPEGYTA RKF SL DP     YKMEVLRD ESK RP+FRVT ++GE
Sbjct: 474  VTDSEFFKDSKHTWPEGYTATRKFISLKDPNASAMYKMEVLRDAESKTRPVFRVTTNSGE 533

Query: 554  QFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGL 613
            QF G TPS CW+KI  +I++ Q   SD+    G  E + ESG+DMFGFSNPEV KLI GL
Sbjct: 534  QFKGDTPSACWNKIYNRIKKIQI-ASDNPDVLG--EGLHESGTDMFGFSNPEVDKLIQGL 590

Query: 614  TKSRPTSKSSLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCR 672
             +SRP SK S  K +S KY+D P GYRPVRV+WKDLDKC+VCHMDEEY+NNLFLQCDKCR
Sbjct: 591  LQSRPPSKVSQRKYSSGKYQDHPTGYRPVRVEWKDLDKCNVCHMDEEYENNLFLQCDKCR 650

Query: 673  MMVHARCYGELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAI 732
            MMVH RCYG+LEP NG+LWLCNLCRP A + PP CCLCPVVGGAMKPTTDGRWAHLACAI
Sbjct: 651  MMVHTRCYGQLEPHNGILWLCNLCRPVALDIPPRCCLCPVVGGAMKPTTDGRWAHLACAI 710

Query: 733  WIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARA 792
            WIPETCL DVK+MEPIDG+ +VSKDRWKLLCSICGVSYGACIQCSN TCRVAYHPLCARA
Sbjct: 711  WIPETCLLDVKKMEPIDGVKKVSKDRWKLLCSICGVSYGACIQCSNNTCRVAYHPLCARA 770

Query: 793  AGLCVELEDEDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDY 852
            AGLCVEL DEDRL LLS+D+D+ DQCIRLLSFCK+H+Q  N  L   E +++      +Y
Sbjct: 771  AGLCVELADEDRLFLLSMDDDEADQCIRLLSFCKRHRQTSNYHLET-EYMIKPAHNIAEY 829

Query: 853  IPPSNPSGCARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLP 912
            +PP NPSGCAR+EPYNY GRRGRKEPEALA AS KRLFVENQPY+VGGY ++  S     
Sbjct: 830  LPPPNPSGCARTEPYNYLGRRGRKEPEALAGASSKRLFVENQPYIVGGYSRHEFSTYE-- 887

Query: 913  SIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGD 972
              R+ GSK S        N LSMA+KY  MKET+RKRLAFGKSGIHGFGIFAK PHRAGD
Sbjct: 888  --RIYGSKMSQIT--TPSNILSMAEKYTFMKETYRKRLAFGKSGIHGFGIFAKLPHRAGD 943

Query: 973  MVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEP 1032
            MVIEYTGELVRP IAD+REH IYNS+VGAGTYMFRID+ERVIDATR GSIAHLINHSCEP
Sbjct: 944  MVIEYTGELVRPPIADKREHLIYNSMVGAGTYMFRIDNERVIDATRTGSIAHLINHSCEP 1003

Query: 1033 NCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEA 1092
            NCYSRVISVNGDEHIIIFAKRD+ +WEELTYDYRFFSIDE+LACYCGFPRCRGVVNDTEA
Sbjct: 1004 NCYSRVISVNGDEHIIIFAKRDVAKWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEA 1063

Query: 1093 EEQVAKLYAPRSELIDW 1109
            EE+ A ++A R EL +W
Sbjct: 1064 EERQANIHASRCELKEW 1080
Histone methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana GN=ATX1 PE=1 SV=2 Back     alignment and function description
>sp|Q8GZ42|ATX5_ARATH Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SUE7|ATX4_ARATH Histone-lysine N-methyltransferase ATX4 OS=Arabidopsis thaliana GN=ATX4 PE=2 SV=3 Back     alignment and function description
>sp|Q24742|TRX_DROVI Histone-lysine N-methyltransferase trithorax OS=Drosophila virilis GN=trx PE=3 SV=1 Back     alignment and function description
>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila melanogaster GN=trx PE=1 SV=4 Back     alignment and function description
>sp|Q03164|MLL1_HUMAN Histone-lysine N-methyltransferase MLL OS=Homo sapiens GN=MLL PE=1 SV=5 Back     alignment and function description
>sp|P55200|MLL1_MOUSE Histone-lysine N-methyltransferase MLL OS=Mus musculus GN=Mll PE=1 SV=3 Back     alignment and function description
>sp|O08550|MLL4_MOUSE Histone-lysine N-methyltransferase MLL4 OS=Mus musculus GN=Wbp7 PE=1 SV=3 Back     alignment and function description
>sp|Q9UMN6|MLL4_HUMAN Histone-lysine N-methyltransferase MLL4 OS=Homo sapiens GN=WBP7 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1112
2555736731103 phd finger protein, putative [Ricinus co 0.937 0.944 0.744 0.0
2241288341050 SET domain protein [Populus trichocarpa] 0.901 0.955 0.684 0.0
2240650441014 SET domain protein [Populus trichocarpa] 0.894 0.981 0.718 0.0
2254337741084 PREDICTED: histone-lysine N-methyltransf 0.948 0.973 0.657 0.0
2977451691068 unnamed protein product [Vitis vinifera] 0.934 0.972 0.652 0.0
4494967921095 PREDICTED: LOW QUALITY PROTEIN: histone- 0.955 0.970 0.668 0.0
4494411691036 PREDICTED: histone-lysine N-methyltransf 0.919 0.986 0.676 0.0
3422098821089 trithorax-like protein [Phaseolus vulgar 0.958 0.978 0.649 0.0
3565689031088 PREDICTED: histone-lysine N-methyltransf 0.943 0.964 0.647 0.0
3565266231088 PREDICTED: histone-lysine N-methyltransf 0.950 0.971 0.640 0.0
>gi|255573673|ref|XP_002527758.1| phd finger protein, putative [Ricinus communis] gi|223532845|gb|EEF34619.1| phd finger protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1613 bits (4176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1098 (74%), Positives = 912/1098 (83%), Gaps = 56/1098 (5%)

Query: 39   NAGTPIRYASLDRVYSACVTATSSTANGGSSNVMSKKIKASRKLC------------RPP 86
             A   +RY SL+RVYS  V+AT      GSSNVMSKK+KA RKL             RPP
Sbjct: 38   TAAARLRYVSLERVYS--VSAT------GSSNVMSKKVKA-RKLVENHHHHHHNPLDRPP 88

Query: 87   IVNVYTRRTKRPRRRQQHSSFLESLLGAREAEAERVDHSLAVKHEICEFENKIVGNDNHH 146
            IV VY+R+     R  +  SF E+L+ AR AE   V     VK EIC+ E+ I G D   
Sbjct: 89   IVYVYSRK-----RLHKSPSFYETLV-ARAAELSNV----VVKTEICDSEDTI-GVDFEP 137

Query: 147  DDHHDLRVLKKRKRFGSSELVKLGIDSISSVFSSFDRPRLRDCRNNNSSSNNNKINNINL 206
                     KKR+R GSSELVKLG+D  S V SS D PRLRDCRN N +SNN+     NL
Sbjct: 138  KG-------KKRRRIGSSELVKLGVDDSSRVLSSLDMPRLRDCRNYNVNSNNSG----NL 186

Query: 207  KRKK----TDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVV 262
            KRKK     +S+  +IL +SPT KRWVRL  DGVDPK FIGL CKVYWPLDADWYSG VV
Sbjct: 187  KRKKRNFVQNSDKDRILLLSPTTKRWVRLNIDGVDPKKFIGLTCKVYWPLDADWYSGCVV 246

Query: 263  GYDSESNRHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMV 322
            GY SE+ RHHV+Y DGD+EDL++SNE+IKFYIS+EEM+ L L+FSI + D D YDYDEMV
Sbjct: 247  GYTSETKRHHVEYQDGDKEDLVISNEKIKFYISREEMEQLNLTFSIKSADGDCYDYDEMV 306

Query: 323  VLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGGRSIPVQFFGT 382
             LAA LDDCQ+LEPGDIIWAKLTGHAMWPAIVVD+SLIG+ KGLNKISG RS+ VQFFGT
Sbjct: 307  ALAAVLDDCQDLEPGDIIWAKLTGHAMWPAIVVDQSLIGERKGLNKISGERSVFVQFFGT 366

Query: 383  HDFARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRA 442
            HDFARI  KQVISFLKGLLSSFHLKC+KP FT+SLEEAK+YLSEQKLPRRMLQLQN++ A
Sbjct: 367  HDFARIKPKQVISFLKGLLSSFHLKCRKPHFTRSLEEAKMYLSEQKLPRRMLQLQNSMNA 426

Query: 443  DDGENSWSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQD 502
            D  +++ S+DEGS  S E+C  +ER+Q  L  +  SPYV GDLQI+SLGKIVKDSEYFQ+
Sbjct: 427  DSCKSASSEDEGSSDSSEDCIDNERIQRILRGLETSPYVIGDLQIISLGKIVKDSEYFQN 486

Query: 503  DRFIWPEGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPST 562
            DRFIWPEGYTA+RKFTS+ DP  C  YKMEVLRD ESKIRPLFRVTLDNGEQ  GSTP  
Sbjct: 487  DRFIWPEGYTALRKFTSVTDPSACTIYKMEVLRDAESKIRPLFRVTLDNGEQIRGSTPCA 546

Query: 563  CWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRPTSKS 622
            CW KI  +IR+ Q + SD FSAEG  E+  +SGSDMFGFSNPEVMKLI GL+KSR  SK 
Sbjct: 547  CWDKIYRRIRKLQYSASDGFSAEGVVERFYKSGSDMFGFSNPEVMKLIKGLSKSRLYSKM 606

Query: 623  SLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYG 681
            S+CKLTS +Y+DLP GYRPVRVDWKDLDKC+VCHMDEEY+NNLFLQCDKCRMMVHARCYG
Sbjct: 607  SICKLTSERYQDLPVGYRPVRVDWKDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYG 666

Query: 682  ELEPVNGVLWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTD 741
            ELEPV+GVLW CNLCRPGAP+  PPCCLCPV+GGAMKPTTDGRWAHLACAIWIPETCL+D
Sbjct: 667  ELEPVDGVLWYCNLCRPGAPD-SPPCCLCPVIGGAMKPTTDGRWAHLACAIWIPETCLSD 725

Query: 742  VKRMEPIDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELED 801
            +KRMEPIDGLNR++KDRWKLLCSICGV+YGACIQCSN TCRVAYHPLCARAAGLCVELED
Sbjct: 726  IKRMEPIDGLNRINKDRWKLLCSICGVAYGACIQCSNNTCRVAYHPLCARAAGLCVELED 785

Query: 802  EDRLNLLSLDEDDEDQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGC 861
            E+RL+LLS+D+D EDQCIRLLSFCK+HKQP N+R   +ER+ ++T R  DYIPP NPSGC
Sbjct: 786  EERLHLLSVDDDVEDQCIRLLSFCKRHKQPSNERPVTEERIGRITHRYSDYIPPCNPSGC 845

Query: 862  ARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKF 921
            ARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQ+  SG TLPS  V GS+F
Sbjct: 846  ARSEPYNYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQHESSGITLPSNGVEGSRF 905

Query: 922  SFSL------HRDAP-NFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMV 974
            S +L        DAP N +SMA+KY++M++TFRKRLAFGKSGIHGFGIFAKHPHRAGDMV
Sbjct: 906  SSNLQWLKTSQLDAPNNIISMAEKYEYMRQTFRKRLAFGKSGIHGFGIFAKHPHRAGDMV 965

Query: 975  IEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNC 1034
            IEYTGELVRP IADRREHFIYNSLVGAGTYMFRI+DERVIDATRAGSIAHLINHSCEPNC
Sbjct: 966  IEYTGELVRPPIADRREHFIYNSLVGAGTYMFRINDERVIDATRAGSIAHLINHSCEPNC 1025

Query: 1035 YSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEE 1094
            YSRVISVNGDEHIIIFAKRDIK+WEELTYDYRFFSIDEQLACYCGFPRCRGVVND EAEE
Sbjct: 1026 YSRVISVNGDEHIIIFAKRDIKRWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDIEAEE 1085

Query: 1095 QVAKLYAPRSELIDWRGD 1112
            QVAKLYAPR+ELID++G+
Sbjct: 1086 QVAKLYAPRNELIDFKGE 1103

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128834|ref|XP_002320433.1| SET domain protein [Populus trichocarpa] gi|222861206|gb|EEE98748.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224065044|ref|XP_002301643.1| SET domain protein [Populus trichocarpa] gi|222843369|gb|EEE80916.1| SET domain protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225433774|ref|XP_002268621.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745169|emb|CBI39161.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449496792|ref|XP_004160228.1| PREDICTED: LOW QUALITY PROTEIN: histone-lysine N-methyltransferase ATX2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449441169|ref|XP_004138356.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|342209882|gb|AEL16988.1| trithorax-like protein [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356568903|ref|XP_003552647.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] Back     alignment and taxonomy information
>gi|356526623|ref|XP_003531916.1| PREDICTED: histone-lysine N-methyltransferase ATX2-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1112
TAIR|locus:21987431083 ATX2 "trithorax-like protein 2 0.937 0.962 0.597 0.0
TAIR|locus:20659231062 ATX1 "homologue of trithorax" 0.796 0.834 0.639 5.50000003364e-317
TAIR|locus:21784461043 SDG29 "AT5G53430" [Arabidopsis 0.382 0.407 0.317 4.8e-57
TAIR|locus:21329121027 SDG16 "SET domain protein 16" 0.375 0.407 0.317 9.1e-57
TAIR|locus:20767551018 SDG14 "SET domain protein 14" 0.177 0.193 0.419 6.3e-56
UNIPROTKB|I3L895323 MLL "Uncharacterized protein" 0.138 0.476 0.5 2e-41
ZFIN|ZDB-GENE-060503-3762863 mll4a "myeloid/lymphoid or mix 0.146 0.056 0.485 9.3e-41
UNIPROTKB|J9NZ022194 RBM42 "Uncharacterized protein 0.138 0.070 0.506 2.9e-39
UNIPROTKB|F1NET53958 MLL "Uncharacterized protein" 0.138 0.038 0.5 5.1e-39
ZFIN|ZDB-GENE-080521-13772 mll4b "myeloid/lymphoid or mix 0.138 0.040 0.506 7e-39
TAIR|locus:2198743 ATX2 "trithorax-like protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3181 (1124.8 bits), Expect = 0., P = 0.
 Identities = 646/1082 (59%), Positives = 752/1082 (69%)

Query:    40 AGTPIRYASLDRVYSACXXXXXXXXXXXXXXXMSKKIKA-------SRKLC---RPPIVN 89
             A  P+RYASL+ VYS                   KK+ A       S +L    RP IV+
Sbjct:    27 ADNPVRYASLESVYSVSSSSSSLCCKTAAGSH--KKVNALKLPMSDSFELQPHRRPEIVH 84

Query:    90 VYXXXXXXXXXXQQHSSFLESLLGAREAEAERVDHSLAVKHEICEFENKIVGXXXXXXXX 149
             VY          ++  SFLE  +   E   ER D    VK E  E +++           
Sbjct:    85 VYCRRKRRRR--RRRESFLELAILQNEG-VERDDR--IVKIESAELDDE--------KEE 131

Query:   150 XXLRVLKKRKRFGSSELVKLGXXXXXXXXXXXXRPRLRDCRXXXXXXXXXXXXXXXLKRK 209
                +  +K++R G+ EL+KLG             P LR CR                KR 
Sbjct:   132 ENKKKKQKKRRIGNGELMKLGVDSTTLSVSAT--PPLRGCRIKAVCSGNKQDGSSRSKRN 189

Query:   210 KTDSNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESN 269
              T  N +K+++ S TAK+WVRL  DGVDPK FIGLQCKV+WPLDA WY G +VGY+ E+ 
Sbjct:   190 -TVKNQEKVVTASATAKKWVRLSYDGVDPKHFIGLQCKVFWPLDAVWYPGSIVGYNVETK 248

Query:   270 RHHVKYVDGDEEDLILSNERIKFYISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLD 329
              H VKY DGD E+L L  E+IKF IS+++M+ L + F  N+V  DG DYDE+V+LAAS +
Sbjct:   249 HHIVKYGDGDGEELALRREKIKFLISRDDMELLNMKFGTNDVVVDGQDYDELVILAASFE 308

Query:   330 DCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLN-KISGGRSIPVQFFGTHDFARI 388
             +CQ+ EP DIIWAKLTGHAMWPAI+VDES+I   KGLN KISGGRS+ VQFFGTHDFARI
Sbjct:   309 ECQDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNKISGGRSVLVQFFGTHDFARI 368

Query:   389 NVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENS 448
              VKQ +SFLKGLLS   LKCK+PRF +++EEAK+YL E KLP RM QLQ     D  E  
Sbjct:   369 QVKQAVSFLKGLLSRSPLKCKQPRFEEAMEEAKMYLKEYKLPGRMDQLQKVADTDCSERI 428

Query:   449 WSQDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWP 508
              S +E S  SG++  KD  +      +G   +  GDLQI++LG+IV DSE+F+D +  WP
Sbjct:   429 NSGEEDSSNSGDDYTKDGEVWLRPTELGDCLHRIGDLQIINLGRIVTDSEFFKDSKHTWP 488

Query:   509 EGYTAVRKFTSLADPRVCNSYKMEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKIC 568
             EGYTA RKF SL DP     YKMEVLRD ESK RP+FRVT ++GEQF G TPS CW+KI 
Sbjct:   489 EGYTATRKFISLKDPNASAMYKMEVLRDAESKTRPVFRVTTNSGEQFKGDTPSACWNKIY 548

Query:   569 MKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLILGLTKSRP-XXXXXXXXX 627
              +I++ Q   SD+    G  E + ESG+DMFGFSNPEV KLI GL +SRP          
Sbjct:   549 NRIKKIQI-ASDNPDVLG--EGLHESGTDMFGFSNPEVDKLIQGLLQSRPPSKVSQRKYS 605

Query:   628 XXXYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVN 687
                Y+D P GYRPVRV+WKDLDKC+VCHMDEEY+NNLFLQCDKCRMMVH RCYG+LEP N
Sbjct:   606 SGKYQDHPTGYRPVRVEWKDLDKCNVCHMDEEYENNLFLQCDKCRMMVHTRCYGQLEPHN 665

Query:   688 GVLWLCNLXXXXXXXXXXXXXXXXVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEP 747
             G+LWLCNL                VVGGAMKPTTDGRWAHLACAIWIPETCL DVK+MEP
Sbjct:   666 GILWLCNLCRPVALDIPPRCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLLDVKKMEP 725

Query:   748 IDGLNRVSKDRWKLLCSICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVXXXXXXXXXX 807
             IDG+ +VSKDRWKLLCSICGVSYGACIQCSN TCRVAYHPLCARAAGLCV          
Sbjct:   726 IDGVKKVSKDRWKLLCSICGVSYGACIQCSNNTCRVAYHPLCARAAGLCVELADEDRLFL 785

Query:   808 XXXXXXXXXQCIRLLSFCKKHKQPLNDRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPY 867
                      QCIRLLSFCK+H+Q  N  L   E +++      +Y+PP NPSGCAR+EPY
Sbjct:   786 LSMDDDEADQCIRLLSFCKRHRQTSNYHLET-EYMIKPAHNIAEYLPPPNPSGCARTEPY 844

Query:   868 NYFGRRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTLPSIRVIGSKFSFSLHR 927
             NY GRRGRKEPEALA AS KRLFVENQPY+VGGY ++  S  T    R+ GSK S  +  
Sbjct:   845 NYLGRRGRKEPEALAGASSKRLFVENQPYIVGGYSRHEFS--TYE--RIYGSKMS-QITT 899

Query:   928 DAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIA 987
              + N LSMA+KY  MKET+RKRLAFGKSGIHGFGIFAK PHRAGDMVIEYTGELVRP IA
Sbjct:   900 PS-NILSMAEKYTFMKETYRKRLAFGKSGIHGFGIFAKLPHRAGDMVIEYTGELVRPPIA 958

Query:   988 DRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHI 1047
             D+REH IYNS+VGAGTYMFRID+ERVIDATR GSIAHLINHSCEPNCYSRVISVNGDEHI
Sbjct:   959 DKREHLIYNSMVGAGTYMFRIDNERVIDATRTGSIAHLINHSCEPNCYSRVISVNGDEHI 1018

Query:  1048 IIFAKRDIKQWEELTYDYRFFSIDEQLACYCGFPRCRGVVNDTEAEEQVAKLYAPRSELI 1107
             IIFAKRD+ +WEELTYDYRFFSIDE+LACYCGFPRCRGVVNDTEAEE+ A ++A R EL 
Sbjct:  1019 IIFAKRDVAKWEELTYDYRFFSIDERLACYCGFPRCRGVVNDTEAEERQANIHASRCELK 1078

Query:  1108 DW 1109
             +W
Sbjct:  1079 EW 1080
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IMP
GO:0008270 "zinc ion binding" evidence=IEA
GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IMP
GO:0051568 "histone H3-K4 methylation" evidence=IMP
TAIR|locus:2065923 ATX1 "homologue of trithorax" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178446 SDG29 "AT5G53430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132912 SDG16 "SET domain protein 16" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076755 SDG14 "SET domain protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|I3L895 MLL "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060503-376 mll4a "myeloid/lymphoid or mixed-lineage leukemia 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZ02 RBM42 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NET5 MLL "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080521-1 mll4b "myeloid/lymphoid or mixed-lineage leukemia 4b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CB22ATX2_ARATH2, ., 1, ., 1, ., 4, 30.63260.95320.9787yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.430.991
3rd Layer2.1.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1112
pfam13832109 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like doma 3e-44
smart00317124 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest 1e-35
COG5141669 COG5141, COG5141, PHD zinc finger-containing prote 1e-35
pfam00856113 pfam00856, SET, SET domain 2e-32
pfam1377189 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domai 3e-25
COG2940480 COG2940, COG2940, Proteins containing SET domain [ 7e-24
pfam0596454 pfam05964, FYRN, F/Y-rich N-terminus 6e-13
cd0516287 cd05162, PWWP, The PWWP domain, named for a conser 1e-12
cd0583895 cd05838, WHSC1_related, The PWWP domain was first 9e-12
pfam0596584 pfam05965, FYRC, F/Y rich C-terminus 5e-11
smart0029363 smart00293, PWWP, domain with conserved PWWP motif 4e-10
smart0054286 smart00542, FYRC, FY-rich domain, C-terminal regio 4e-10
pfam0085574 pfam00855, PWWP, PWWP domain 2e-08
cd0583483 cd05834, HDGF_related, The PWWP domain is an essen 3e-08
pfam1383133 pfam13831, PHD_2, PHD-finger 2e-07
cd05837110 cd05837, MSH6_like, The PWWP domain is present in 1e-06
cd0584093 cd05840, SPBC215_ISWI_like, The PWWP domain is a c 1e-06
cd0583686 cd05836, N_Pac_NP60, The PWWP domain is an essenti 2e-06
smart0054144 smart00541, FYRN, FY-rich domain, N-terminal regio 7e-05
pfam0062851 pfam00628, PHD, PHD-finger 1e-04
smart0024947 smart00249, PHD, PHD zinc finger 5e-04
cd0583587 cd05835, Dnmt3b_related, The PWWP domain is an ess 0.001
>gnl|CDD|206003 pfam13832, zf-HC5HC2H_2, PHD-zinc-finger like domain Back     alignment and domain information 
 Score =  155 bits (393), Expect = 3e-44
 Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 15/124 (12%)

Query: 705 PPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCS 764
             CCLCP+ GGA+K TTDGRW H+ CAI++PE    +   MEPID ++R+ K+RWKL C 
Sbjct: 1   AECCLCPLRGGALKKTTDGRWVHVLCAIFVPEVRFGNGATMEPID-VSRIPKERWKLKCC 59

Query: 765 ICGVSYGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDRLNLLSLDEDDEDQCIRLLSF 824
            C    GACIQCS   C+ ++H  CARAAG+ +E+ED   L               ++++
Sbjct: 60  FCKKRSGACIQCSYGRCQTSFHVTCARAAGVYMEIEDWPNLQ--------------VIAY 105

Query: 825 CKKH 828
           C+KH
Sbjct: 106 CQKH 109

Length = 109
>gnl|CDD|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>gnl|CDD|216155 pfam00856, SET, SET domain Back     alignment and domain information
>gnl|CDD|222368 pfam13771, zf-HC5HC2H, PHD-like zinc-binding domain Back     alignment and domain information
>gnl|CDD|225491 COG2940, COG2940, Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus Back     alignment and domain information
>gnl|CDD|99894 cd05162, PWWP, The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>gnl|CDD|99899 cd05838, WHSC1_related, The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus Back     alignment and domain information
>gnl|CDD|214603 smart00293, PWWP, domain with conserved PWWP motif Back     alignment and domain information
>gnl|CDD|197781 smart00542, FYRC, FY-rich domain, C-terminal region Back     alignment and domain information
>gnl|CDD|216154 pfam00855, PWWP, PWWP domain Back     alignment and domain information
>gnl|CDD|99895 cd05834, HDGF_related, The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger Back     alignment and domain information
>gnl|CDD|99898 cd05837, MSH6_like, The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS Back     alignment and domain information
>gnl|CDD|99901 cd05840, SPBC215_ISWI_like, The PWWP domain is a component of the S Back     alignment and domain information
>gnl|CDD|99897 cd05836, N_Pac_NP60, The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>gnl|CDD|128814 smart00541, FYRN, FY-rich domain, N-terminal region Back     alignment and domain information
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|99896 cd05835, Dnmt3b_related, The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1112
KOG10801005 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG0954 893 consensus PHD finger protein [General function pre 100.0
KOG0956 900 consensus PHD finger protein AF10 [General functio 100.0
KOG4442 729 consensus Clathrin coat binding protein/Huntingtin 100.0
COG5141669 PHD zinc finger-containing protein [General functi 100.0
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 100.0
KOG1079739 consensus Transcriptional repressor EZH1 [Transcri 99.96
KOG0957 707 consensus PHD finger protein [General function pre 99.95
PF13832110 zf-HC5HC2H_2: PHD-zinc-finger like domain 99.89
cd0583483 HDGF_related The PWWP domain is an essential part 99.87
KOG1082364 consensus Histone H3 (Lys9) methyltransferase SUV3 99.87
cd0583686 N_Pac_NP60 The PWWP domain is an essential part of 99.86
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 99.85
cd0583895 WHSC1_related The PWWP domain was first identified 99.84
KOG10831306 consensus Putative transcription factor ASH1/LIN-5 99.83
cd0583587 Dnmt3b_related The PWWP domain is an essential com 99.83
cd0584093 SPBC215_ISWI_like The PWWP domain is a component o 99.82
cd0516287 PWWP The PWWP domain, named for a conserved Pro-Tr 99.82
cd0584183 BS69_related The PWWP domain is part of BS69 prote 99.82
PF0085586 PWWP: PWWP domain; InterPro: IPR000313 Upon charac 99.79
smart0029363 PWWP domain with conserved PWWP motif. conservatio 99.76
KOG1085392 consensus Predicted methyltransferase (contains a 99.74
cd05837110 MSH6_like The PWWP domain is present in MSH6, a mi 99.72
cd0608080 MUM1_like Mutated melanoma-associated antigen 1 (M 99.63
cd05839111 BR140_related The PWWP domain is found in the BR14 99.58
COG2940480 Proteins containing SET domain [General function p 99.57
KOG11411262 consensus Predicted histone methyl transferase [Ch 99.51
PF1377190 zf-HC5HC2H: PHD-like zinc-binding domain 99.51
PF0596454 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The 99.47
KOG1904496 consensus Transcription coactivator [Transcription 99.43
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 99.38
PF0596586 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The 99.37
smart0054286 FYRC "FY-rich" domain, C-terminal region. is somet 99.36
PF0946555 LBR_tudor: Lamin-B receptor of TUDOR domain; Inter 99.11
smart0054144 FYRN "FY-rich" domain, N-terminal region. is somet 99.01
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 98.96
KOG1081463 consensus Transcription factor NSD1 and related SE 98.81
KOG2589 453 consensus Histone tail methylase [Chromatin struct 98.72
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 97.7
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 97.54
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.52
KOG2461 396 consensus Transcription factor BLIMP-1/PRDI-BF1, c 97.42
PF15057124 DUF4537: Domain of unknown function (DUF4537) 97.39
KOG1244336 consensus Predicted transcription factor Requiem/N 97.2
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 97.12
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 97.09
KOG1512381 consensus PHD Zn-finger protein [General function 96.88
cd0450848 TUDOR Tudor domains are found in many eukaryotic o 96.83
smart0074361 Agenet Tudor-like domain present in plant sequence 96.8
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 96.6
KOG1081463 consensus Transcription factor NSD1 and related SE 96.4
KOG1084375 consensus Transcription factor TCF20 [Transcriptio 96.11
KOG0825 1134 consensus PHD Zn-finger protein [General function 96.05
PF09038122 53-BP1_Tudor: Tumour suppressor p53-binding protei 95.78
KOG4675273 consensus Uncharacterized conserved protein, conta 95.65
smart0050826 PostSET Cysteine-rich motif following a subset of 95.59
KOG4299613 consensus PHD Zn-finger protein [General function 95.51
KOG1973274 consensus Chromatin remodeling protein, contains P 94.8
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 94.77
PF06003264 SMN: Survival motor neuron protein (SMN); InterPro 93.88
KOG0383 696 consensus Predicted helicase [General function pre 92.13
KOG1141 1262 consensus Predicted histone methyl transferase [Ch 88.94
PF0816996 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR01260 88.52
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 88.46
PF1171755 Tudor-knot: RNA binding activity-knot of a chromod 88.42
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 88.27
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 88.18
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 87.71
smart0074361 Agenet Tudor-like domain present in plant sequence 84.72
KOG0957707 consensus PHD finger protein [General function pre 81.94
KOG1512381 consensus PHD Zn-finger protein [General function 81.05
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 80.54
smart0033357 TUDOR Tudor domain. Domain of unknown function pre 80.35
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=3.6e-62  Score=601.38  Aligned_cols=728  Identities=26%  Similarity=0.364  Sum_probs=499.3

Q ss_pred             CCCccccccCcccccceeeccCCCCCCCccCceeEEEccCCCCeeeEEEEEeeCCCCeEEEEccCCCccccccccceEEE
Q 001263          213 SNSKKILSVSPTAKRWVRLCCDGVDPKAFIGLQCKVYWPLDADWYSGFVVGYDSESNRHHVKYVDGDEEDLILSNERIKF  292 (1112)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~v~wp~d~~~y~g~v~~~~~~~~~h~v~Yddg~~e~l~l~~e~~~~  292 (1112)
                      -......+..+.++.|........+.+...+......||.++.|            ..+...+-.++........+....
T Consensus       256 m~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  323 (1005)
T KOG1080|consen  256 MERPFSRPVRPFQDQTELKREKARSFEQALEEAGLAEQGNWKKD------------VDDAHLITGDSSATDSALSEGGPS  323 (1005)
T ss_pred             cccccchhhhhccccccccccCccchhHHHHHhhcccccccccc------------ccchhhhcCCCccchhhhhccccc
Confidence            33456667888888899989999999999999999999999998            334445556677777777777777


Q ss_pred             EecchhhhhhhhcccccCCCCCCCCchhHHhhhcccccCCCCCCCcEEEEeccCcCCCCceeecCccccCccccccCCCC
Q 001263          293 YISQEEMDCLKLSFSINNVDNDGYDYDEMVVLAASLDDCQELEPGDIIWAKLTGHAMWPAIVVDESLIGDYKGLNKISGG  372 (1112)
Q Consensus       293 ~~~~~e~~~l~~~~~~~~~~~~~~~~de~~~~a~~~~~~~~f~~GdlVWaK~~GyPwWPa~V~~~~~~~~~~~~~~~~~~  372 (1112)
                      ..+..++...+-.+..++..++..+.++...++.....+..|+.-+..|+...| -.|+|+++.+...+......     
T Consensus       324 ~~s~~~~~~~~~~~~s~~~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~l~~k~~~~~~~s~~~~g~-----  397 (1005)
T KOG1080|consen  324 SFSELQKLHEKGFIKSHSSVFRKSDKIHVPSTSITKSPPPIAKSAKKTKALPPA-QGLLCKECSDETKSNQTCGI-----  397 (1005)
T ss_pred             cccccccccccCCccccccccCCCccccccccccccCCCCchhhccccCccccc-chhhhhhhhchhhccccccc-----
Confidence            788888888888889999999999999999999999999999999999999999 88999998864433311111     


Q ss_pred             CcEEEEEeCCCC--EEEeeCCCcccccccccccccccCChHHHHHHHHHHHHHHHhCCChhHHhhhhhccccccccCccc
Q 001263          373 RSIPVQFFGTHD--FARINVKQVISFLKGLLSSFHLKCKKPRFTQSLEEAKVYLSEQKLPRRMLQLQNAIRADDGENSWS  450 (1112)
Q Consensus       373 ~~~~V~FFG~~~--~awv~~~~l~~f~~~~~~~~~~k~k~~~f~~Al~Ea~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~  450 (1112)
                          +++-+.+.  -.|+...-..++...                         ..  .+           ..+..    
T Consensus       398 ----~~~~~~~~~~~d~~~~~~c~~~~~~-------------------------~~--~~-----------~~~~~----  431 (1005)
T KOG1080|consen  398 ----CKRIWHSSDSGDWVRCDGCDVWIHA-------------------------RC--DK-----------ISSEK----  431 (1005)
T ss_pred             ----cceecccccccceeeecccccceee-------------------------cc--Cc-----------ccccc----
Confidence                22222222  234333333333221                         00  00           00000    


Q ss_pred             ccCCCCCCCCCcccccccccccCCCCCCCeeecccccccccceeeCCCcccccceeecCCeEEEeeeccccCCCCcceee
Q 001263          451 QDEGSLGSGENCFKDERLQGTLGSIGISPYVFGDLQILSLGKIVKDSEYFQDDRFIWPEGYTAVRKFTSLADPRVCNSYK  530 (1112)
Q Consensus       451 e~e~~~~s~ed~~~d~~~~~~l~~~~~~P~~~g~l~i~slG~Iv~d~~~fh~~~~IyP~Gy~s~R~~~S~~dp~~~~~Y~  530 (1112)
                           ......       ...-.....+|...+.+.+.                      |+-.....+-..+....   
T Consensus       432 -----~~~~s~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~l~~d~~s~~~~---  474 (1005)
T KOG1080|consen  432 -----FKYSSS-------GMHNYQTLNFPQEYTALNLS----------------------YCPKCKLTFDDLSTDLS---  474 (1005)
T ss_pred             -----cccccc-------cccccccccchhhhhhhhcc----------------------ccchhheecccccccCC---
Confidence                 000000       00001112222222221111                      11111111111000000   


Q ss_pred             EEEEecCCCCCcceEEEEcCCCCcccCCCchhHHHHHHHHHHhhcCCCCCccccccccccccccCccccCCCChhHHHHh
Q 001263          531 MEVLRDTESKIRPLFRVTLDNGEQFTGSTPSTCWSKICMKIREGQNNTSDDFSAEGAAEKISESGSDMFGFSNPEVMKLI  610 (1112)
Q Consensus       531 ~eIl~~~~~~~~P~F~Vt~ed~~~~~g~Sps~~W~~v~k~ik~~~~~~~d~~~~~~~~~~~~~sG~~~FGls~P~V~klI  610 (1112)
                              .   +.      .+..+-..++..+|.+..+...+.+..+......   -.++......+|++..+.....+
T Consensus       475 --------~---~~------~~~~~~~~~~~~~~k~~~~e~~k~~~~~~~~~k~---~~~~~~~~~~l~~~~~~~~~~~~  534 (1005)
T KOG1080|consen  475 --------P---AA------LARVFHMLRYSVKKKKFLSEWERHTGATAKIWKD---SSRVKDELLPLPKWVESRGRSIM  534 (1005)
T ss_pred             --------c---ch------heeeecccCcchhhhhcccchhhhhccccccccc---ccccccccccchhhhhhcccccc
Confidence                    0   11      1223445556666776666665555544322111   11122345556666666555455


Q ss_pred             hccCCCCCCCccccccccc-ccCCCCCCCcCCcccccCcCccccccCCcccCCCeeEEccCCCccccccccCCcCCCCCC
Q 001263          611 LGLTKSRPTSKSSLCKLTS-KYRDLPGGYRPVRVDWKDLDKCSVCHMDEEYQNNLFLQCDKCRMMVHARCYGELEPVNGV  689 (1112)
Q Consensus       611 qsLp~a~~~~k~~~~k~~s-~~~~lp~g~~~~~~~~~~~~~C~VC~~~~~~~~n~ll~Cd~C~~~VH~~CYG~~~~~~~~  689 (1112)
                      .........++...++-.. +.+..+..+......|.+.+.|.+|...+.+..|.++.|+.|++.+|+.|||...++.+.
T Consensus       535 ~~~~~~~p~s~~~~~~~s~~~~~~~~~~~~~~~l~~~~t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~  614 (1005)
T KOG1080|consen  535 NTYNSEKPKSIVLMGKTSVQRMLLELIEKREPRLSKWTTERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGT  614 (1005)
T ss_pred             ccccccCCcchhhhccchhhhhcCcccccchhhhcCCCcccccccccccccccceeeeeccccccCCCcccccCCCCCCC
Confidence            5554444444433332221 334445556777777777799999999999999999999999999999999999888888


Q ss_pred             ceecccccCCCCCCCCCcccCCCCCCCceecCCCceeeeeccccccceEecCCCCCccccccccccccccCccceeecCc
Q 001263          690 LWLCNLCRPGAPEPPPPCCLCPVVGGAMKPTTDGRWAHLACAIWIPETCLTDVKRMEPIDGLNRVSKDRWKLLCSICGVS  769 (1112)
Q Consensus       690 ~W~C~~C~~~~~~~~~~C~LC~~~gGalK~t~~g~WvHv~Cal~~pe~~f~~~~~~~pi~~i~~i~~~~~~~~C~iC~~~  769 (1112)
                      .|+|+.|...  .....|++|+.+||||++++.|.|+|+.||.|.|++.+.++..|+|+.++..++...+...|.+    
T Consensus       615 ~~~~~~~~~~--~~~r~~~l~~~~g~al~p~d~gr~~~~e~a~~~~e~~~~~~~~~~p~~~~~~~p~~~~~~~~~~----  688 (1005)
T KOG1080|consen  615 SWVCDSCETL--DIKRSCCLCPVKGGALKPTDEGRWVHVECAWFRPEVCLASPERMEPAVGTFKIPALSFLKICFI----  688 (1005)
T ss_pred             cchhhccccc--cCCchhhhccccCcccCCCCccchhhhhchhccccccCCCccCCCCcccccccCccchhhhccc----
Confidence            9999999964  4467899999999999999999999999999999999999999999999999999998888888    


Q ss_pred             CceeeecCCCCCCccccccchhhcCceEEeecccc----------------ccccccCCcccccccceeeccccCccccc
Q 001263          770 YGACIQCSNTTCRVAYHPLCARAAGLCVELEDEDR----------------LNLLSLDEDDEDQCIRLLSFCKKHKQPLN  833 (1112)
Q Consensus       770 ~Ga~iqC~~~~C~~~FH~~CA~~aG~~~e~~~~~~----------------~~~~~~~~~~~~~~~~~~~~C~~H~~~~~  833 (1112)
                      .|.|.||.  .|...||.+||..+|+.++...-..                ..++.++....+...+..++|.+|+....
T Consensus       689 ~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~k~~~~~g~  766 (1005)
T KOG1080|consen  689 HGSCRQCC--KCETGSHAMCASRAGYIMEAVSLEEVSQQTTSYVKEDGPGPDSVLKVNTPSGKFGAENLSQNKKSRTDGV  766 (1005)
T ss_pred             cccccccc--hhhhcceehhhcCccChhhhhhhhhhhhhhhhhhhhccCCcccceeecCccccccccchhhhhhcccccc
Confidence            67899998  8999999999999998764331110                01122222222333334445555543321


Q ss_pred             cchhhhccchhhcccccCCCCCCCCCCccccCcccccc--cCCCCChhHHHHhhcccccccCCCcccCCcccCCCCCCCC
Q 001263          834 DRLAVDERLVQVTRRCCDYIPPSNPSGCARSEPYNYFG--RRGRKEPEALAAASLKRLFVENQPYLVGGYCQNGLSGNTL  911 (1112)
Q Consensus       834 ~r~~~e~rl~~~~~~~~~~~p~~NpsGCARsEpy~~~~--Rr~~k~p~~~aaa~~k~~~~~~~~~~~~~~~~~~~~g~~~  911 (1112)
                      ... +..         .++.+  .+.-|+|.+|++...  ...+..+...+-+..+++..+..++..++..++.+.... 
T Consensus       767 ~~~-~~~---------~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~~~r~~~~~~~~~~~s~~~~~s~~~s~~~s~~~-  833 (1005)
T KOG1080|consen  767 RLV-LTY---------KEYAP--LREIKSRAEPLNRIDFSSEARCRSESRSDNSKSPLAEESESDITSGGSSHDLSAEE-  833 (1005)
T ss_pred             ccc-ccc---------ccccc--cccchhcccCCcccCccccccccchhhcccccccccccccccccccccccchhHHh-
Confidence            111 000         01111  123356666665321  112223333455556677777777777766666543111 


Q ss_pred             CcccccCcccccccCCCCCCcCChhhhhHHhhhcccce-EEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhh
Q 001263          912 PSIRVIGSKFSFSLHRDAPNFLSMADKYKHMKETFRKR-LAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRR  990 (1112)
Q Consensus       912 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r  990 (1112)
                         ...+...+  +.-..+.....+...+.++..++++ |.|++|.||||||||+++|.+|+||+||+||+|++..|+.|
T Consensus       834 ---rl~q~rl~--a~~~~~~~~~~~~~~~~~~~~~rkk~~~F~~s~iH~wglfa~~~i~~~dmViEY~Ge~vR~~iad~R  908 (1005)
T KOG1080|consen  834 ---RLNQFRLS--ASFTASFILDEAEVLRYNQLKFRKKYVKFGRSGIHGWGLFAMENIAAGDMVIEYRGELVRSSIADLR  908 (1005)
T ss_pred             ---hhHHHHhh--hhcccccccchHHHHHHHHHhhhhhhhccccccccccceeeccCccccceEEEeeceehhhhHHHHH
Confidence               11111111  1112234466777888888877755 99999999999999999999999999999999999999999


Q ss_pred             hHHhhhcccCCcceeEeecCcceecccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCC
Q 001263          991 EHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSI 1070 (1112)
Q Consensus       991 ~~~~y~~~~~~~~y~f~~~~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~ 1070 (1112)
                      +.+ |......++|+|+++++.|||||+.||+||||||||+|||+++++.|+|..+|+|||.|+|.+||||||||.|+.+
T Consensus       909 E~~-Y~~~gi~~sYlfrid~~~ViDAtk~gniAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e  987 (1005)
T KOG1080|consen  909 EAR-YERMGIGDSYLFRIDDEVVVDATKKGNIARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTE  987 (1005)
T ss_pred             HHH-HhccCcccceeeecccceEEeccccCchhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccc
Confidence            975 7776668899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCeeeecCCCCCccccC
Q 001263         1071 DEQLACYCGFPRCRGVVN 1088 (1112)
Q Consensus      1071 ~~~~~C~Cgs~~Crg~~~ 1088 (1112)
                      +.+++|+|||++|||+||
T Consensus       988 ~~kipClCgap~Crg~~n 1005 (1005)
T KOG1080|consen  988 DDKIPCLCGAPNCRGFLN 1005 (1005)
T ss_pred             ccccccccCCCccccccC
Confidence            999999999999999997

>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain Back     alignment and domain information
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF Back     alignment and domain information
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS) Back     alignment and domain information
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription] Back     alignment and domain information
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis Back     alignment and domain information
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S Back     alignment and domain information
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids Back     alignment and domain information
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions Back     alignment and domain information
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified [] Back     alignment and domain information
>smart00293 PWWP domain with conserved PWWP motif Back     alignment and domain information
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only] Back     alignment and domain information
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS Back     alignment and domain information
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA) Back     alignment and domain information
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2 Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain Back     alignment and domain information
>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>KOG1904 consensus Transcription coactivator [Transcription] Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>smart00542 FYRC "FY-rich" domain, C-terminal region Back     alignment and domain information
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane Back     alignment and domain information
>smart00541 FYRN "FY-rich" domain, N-terminal region Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription] Back     alignment and domain information
>PF15057 DUF4537: Domain of unknown function (DUF4537) Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription] Back     alignment and domain information
>KOG1084 consensus Transcription factor TCF20 [Transcription] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix Back     alignment and domain information
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only] Back     alignment and domain information
>smart00508 PostSET Cysteine-rich motif following a subset of SET domains Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics] Back     alignment and domain information
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>smart00743 Agenet Tudor-like domain present in plant sequences Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>smart00333 TUDOR Tudor domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1112
2w5y_A192 Binary Complex Of The Mixed Lineage Leukaemia (Mll1 3e-37
3ope_A222 Structural Basis Of Auto-Inhibitory Mechanism Of Hi 1e-21
3ooi_A232 Crystal Structure Of Human Histone-Lysine N-Methylt 5e-18
2r3a_A300 Methyltransferase Domain Of Human Suppressor Of Var 7e-14
4fmu_A278 Crystal Structure Of Methyltransferase Domain Of Hu 7e-14
2igq_A285 Human Euchromatic Histone Methyltransferase 1 Lengt 2e-12
3hna_A287 Crystal Structure Of Catalytic Domain Of Human Euch 2e-12
3fpd_A261 G9a-Like Protein Lysine Methyltransferase Inhibitio 3e-12
3k5k_A283 Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazolin 5e-12
2o8j_A281 Human Euchromatic Histone Methyltransferase 2 Lengt 5e-12
4ij8_A165 Crystal Structure Of The Complex Of Setd8 With Sam 1e-11
4i51_A286 Methyltransferase Domain Of Human Euchromatic Histo 1e-11
1zkk_A167 Crystal Structure Of Hset8 In Ternary Complex With 3e-11
2bqz_A161 Crystal Structure Of A Ternary Complex Of The Human 3e-11
3f9z_A166 Structural Insights Into Lysine Multiple Methylatio 9e-11
3f9w_A166 Structural Insights Into Lysine Multiple Methylatio 9e-11
1mvh_A299 Structure Of The Set Domain Histone Lysine Methyltr 2e-07
3bo5_A290 Crystal Structure Of Methyltransferase Domain Of Hu 4e-07
2wzo_A146 The Structure Of The Fyr Domain Length = 146 9e-07
1ml9_A302 Structure Of The Neurospora Set Domain Protein Dim- 4e-06
4fu6_A153 Crystal Structure Of The Psip1 Pwwp Domain Length = 2e-04
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set Domain With The Cofactor Product S-Adenosylhomocysteine. Length = 192 Back     alignment and structure 
Iteration: 1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 933  LSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREH 992
            L M  +++H+K+T ++ +   +S IHG G+F K    AG+MVIEY G ++R    D+RE 
Sbjct: 37   LPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREK 96
Query: 993  FIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAK 1052
            + Y+S  G G YMFRIDD  V+DAT  G+ A  INHSCEPNCYSRVI+++G +HI+IFA 
Sbjct: 97   Y-YDSK-GIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAM 154
Query: 1053 RDIKQWEELTYDYRFFSID--EQLACYCGFPRCRGVVN 1088
            R I + EELTYDY+F   D   +L C CG  +CR  +N
Sbjct: 155  RKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone Methyltransferase Length = 222 Back     alignment and structure
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine N-Methyltransferase Nsd1 Set Domain In Complex With S-Adenosyl-L-Methionine Length = 232 Back     alignment and structure
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of Variegation 3-9 Homolog 2 Length = 300 Back     alignment and structure
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set Domain- Containing Protein 2 Compound: Pr-Snf Length = 278 Back     alignment and structure
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1 Length = 285 Back     alignment and structure
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic Histone Methyltransferase 1 In Complex With Sah And Mono- Methylated H3k9 Peptide Length = 287 Back     alignment and structure
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By Bix- 01294 Length = 261 Back     alignment and structure
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A Potent Inhibitor Of Histone Lysine Methyltransferase, G9a Length = 283 Back     alignment and structure
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2 Length = 281 Back     alignment and structure
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam Length = 165 Back     alignment and structure
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone Methyltransferase 1, Mutant Y1211a Length = 286 Back     alignment and structure
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4 Peptide (16-24) And Adohcy Length = 167 Back     alignment and structure
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human Histone Methyltransferase Pr-Set7 (Also Known As Set8) Length = 161 Back     alignment and structure
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y245f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By Set Domain Methyltransferases, Set8-Y334f H4-Lys20 ADOHCY Length = 166 Back     alignment and structure
>pdb|1MVH|A Chain A, Structure Of The Set Domain Histone Lysine Methyltransferase Clr4 Length = 299 Back     alignment and structure
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Histone-Lysine N-Methyltransferase Setmar Length = 290 Back     alignment and structure
>pdb|2WZO|A Chain A, The Structure Of The Fyr Domain Length = 146 Back     alignment and structure
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A Histone Lysine Methyltransferase Length = 302 Back     alignment and structure
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain Length = 153 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1112
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 4e-71
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 6e-52
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 1e-51
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 6e-49
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 2e-47
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 2e-39
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 2e-33
2wzo_A146 Transforming growth factor beta regulator 1; nucle 2e-32
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 2e-31
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 9e-31
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 1e-30
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 1e-30
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 5e-30
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 1e-28
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 2e-23
2daq_A110 WHSC1L1 protein, isoform long; PWWP domain, struct 6e-21
1h3z_A109 Hypothetical 62.8 kDa protein C215.07C; nuclear pr 2e-18
2l89_A108 PWWP domain-containing protein 1; histone binding, 8e-18
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 1e-16
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 8e-15
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 1e-14
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 1e-13
3qby_A94 Hepatoma-derived growth factor-related protein 2; 2e-13
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 3e-13
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 3e-13
3db5_A151 PR domain zinc finger protein 4; methyltransferase 9e-13
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 2e-12
3dal_A196 PR domain zinc finger protein 1; methyltransferase 8e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-09
3pfs_A158 Bromodomain and PHD finger-containing protein 3; s 2e-08
3l42_A130 Peregrin; transcription regulation, histone H3 ace 2e-08
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 4e-08
3ray_A237 PR domain-containing protein 11; structural genomi 8e-06
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 1e-05
2yt5_A66 Metal-response element-binding transcription facto 2e-05
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 7e-05
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 3e-04
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 9e-04
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Length = 192 Back     alignment and structure
 Score =  233 bits (597), Expect = 4e-71
 Identities = 77/164 (46%), Positives = 105/164 (64%), Gaps = 4/164 (2%)

Query: 927  RDAPNFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSI 986
            R     L M  +++H+K+T ++ +   +S IHG G+F K    AG+MVIEY G ++R   
Sbjct: 31   RATSMDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQ 90

Query: 987  ADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEH 1046
             D+RE +  +   G G YMFRIDD  V+DAT  G+ A  INHSCEPNCYSRVI+++G +H
Sbjct: 91   TDKREKYYDSK--GIGCYMFRIDDSEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKH 148

Query: 1047 IIIFAKRDIKQWEELTYDYRF--FSIDEQLACYCGFPRCRGVVN 1088
            I+IFA R I + EELTYDY+F       +L C CG  +CR  +N
Sbjct: 149  IVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN 192
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Length = 222 Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Length = 166 Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Length = 232 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Length = 119 Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Length = 300 Back     alignment and structure
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Length = 290 Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Length = 261 Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Length = 299 Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Length = 302 Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Length = 287 Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Length = 273 Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Length = 247 Back     alignment and structure
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Length = 110 Back     alignment and structure
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Length = 108 Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Length = 149 Back     alignment and structure
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Length = 147 Back     alignment and structure
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} Length = 154 Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Length = 134 Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} PDB: 3qj6_A* 3eae_A 1n27_A Length = 94 Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Length = 110 Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Length = 170 Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Length = 151 Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Length = 152 Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Length = 196 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Length = 158 Back     alignment and structure
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Length = 130 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Length = 237 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1112
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 100.0
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 100.0
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 100.0
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 100.0
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 99.98
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 99.97
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 99.97
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 99.97
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 99.97
2wzo_A146 Transforming growth factor beta regulator 1; nucle 99.96
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 99.96
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 99.91
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 99.91
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 99.9
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 99.89
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 99.89
2daq_A110 WHSC1L1 protein, isoform long; PWWP domain, struct 99.85
3qby_A94 Hepatoma-derived growth factor-related protein 2; 99.84
4fu6_A153 PC4 and SFRS1-interacting protein; structural geno 99.83
1ri0_A110 Hepatoma-derived growth factor; HDGF, HATH domain, 99.82
2l89_A108 PWWP domain-containing protein 1; histone binding, 99.81
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.81
2gfu_A134 DNA mismatch repair protein MSH6; PWWP domain, tud 99.81
3llr_A154 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 99.81
1h3z_A109 Hypothetical 62.8 kDa protein C215.07C; nuclear pr 99.78
1khc_A147 DNA cytosine-5 methyltransferase 3B2; five beta-sh 99.77
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 99.72
3pfs_A158 Bromodomain and PHD finger-containing protein 3; s 99.69
3dal_A196 PR domain zinc finger protein 1; methyltransferase 99.69
3db5_A151 PR domain zinc finger protein 4; methyltransferase 99.66
3l42_A130 Peregrin; transcription regulation, histone H3 ace 99.65
3ray_A237 PR domain-containing protein 11; structural genomi 99.51
2lq6_A87 Bromodomain-containing protein 1; PHD finger, meta 99.44
3ihx_A152 PR domain zinc finger protein 10; PRDM10, methyltr 99.37
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 98.89
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 98.77
2yt5_A66 Metal-response element-binding transcription facto 98.58
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 98.46
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.41
3n71_A 490 Histone lysine methyltransferase SMYD1; heart deve 98.39
3qwp_A 429 SET and MYND domain-containing protein 3; SMYD3,SE 98.38
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 98.31
3qww_A 433 SET and MYND domain-containing protein 2; methyltr 98.26
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 98.2
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 98.19
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 98.18
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 98.15
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.12
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.11
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 98.1
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.09
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 98.08
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 98.06
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 98.06
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 98.05
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 98.04
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 97.96
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 97.92
1weu_A91 Inhibitor of growth family, member 4; structural g 97.76
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 97.72
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 97.71
2k16_A75 Transcription initiation factor TFIID subunit 3; p 97.69
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 97.66
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 97.63
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 97.61
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 97.61
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 97.6
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.59
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 97.58
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 97.46
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 97.46
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 97.32
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 97.28
2l8d_A66 Lamin-B receptor; DNA binding protein; NMR {Gallus 97.23
2dig_A68 Lamin-B receptor; tudor domain, integral nuclear e 97.19
1we9_A64 PHD finger family protein; structural genomics, PH 97.09
1wew_A78 DNA-binding family protein; structural genomics, P 96.97
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 96.94
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 96.92
1x4i_A70 Inhibitor of growth protein 3; structural genomics 96.89
2equ_A74 PHD finger protein 20-like 1; tudor domain, struct 96.81
1wee_A72 PHD finger family protein; structural genomics, PH 96.79
2g3r_A123 Tumor suppressor P53-binding protein 1; tandem tud 96.78
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 96.73
1wem_A76 Death associated transcription factor 1; structura 96.69
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 96.69
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 96.68
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.6
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 96.57
3qii_A85 PHD finger protein 20; tudor domain, structural ge 96.54
3pmi_A134 PWWP domain-containing protein MUM1; structural ge 96.52
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.5
3s6w_A54 Tudor domain-containing protein 3; methylated argi 96.46
1g5v_A88 SurviVal motor neuron protein 1; mRNA processing, 96.36
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 96.28
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 95.21
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 96.04
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 96.0
3qxy_A 449 N-lysine methyltransferase SETD6; epigenetics, pro 95.63
2eqj_A66 Metal-response element-binding transcription facto 95.63
1ssf_A156 Transformation related protein 53 binding protein 95.61
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 95.5
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 95.49
2d9t_A78 Tudor domain-containing protein 3; structural geno 95.49
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 95.45
2h21_A 440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 95.08
3h8z_A128 FragIle X mental retardation syndrome-related Pro; 94.9
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 94.2
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 93.83
3smt_A 497 Histone-lysine N-methyltransferase SETD3; histone 93.82
3qii_A85 PHD finger protein 20; tudor domain, structural ge 93.39
4hcz_A58 PHD finger protein 1; protein-peptide complex, tud 93.29
3p8d_A67 Medulloblastoma antigen MU-MB-50.72; tudor domain, 93.1
2yrv_A117 AT-rich interactive domain-containing protein 4A; 92.91
1wil_A89 KIAA1045 protein; ring finger domain, structural g 92.85
2eqk_A85 Tudor domain-containing protein 4; structural geno 91.92
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 91.9
3kv5_D488 JMJC domain-containing histone demethylation prote 91.64
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 91.18
2m0o_A79 PHD finger protein 1; tudor domain, H3K36ME3 bindi 90.27
2f5k_A102 MORF-related gene 15 isoform 1; beta barrel, gene 89.55
1wew_A78 DNA-binding family protein; structural genomics, P 89.33
3fdr_A94 Tudor and KH domain-containing protein; TDRD2, str 88.22
1we9_A64 PHD finger family protein; structural genomics, PH 87.92
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 87.7
4a4f_A64 SurviVal of motor neuron-related-splicing factor; 86.92
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 85.91
1wee_A72 PHD finger family protein; structural genomics, PH 85.12
2xk0_A69 Polycomb protein PCL; transcription, aromatic CAGE 84.42
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 84.19
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 83.95
2diq_A110 Tudor and KH domain-containing protein; tudor doma 83.69
2ldm_A81 Uncharacterized protein; PHF20, tudor domain, epig 83.99
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 82.86
1wem_A76 Death associated transcription factor 1; structura 82.78
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 82.58
3dlm_A213 Histone-lysine N-methyltransferase setdb1; setdb1_ 82.4
1mhn_A59 SurviVal motor neuron protein; SMN, SMA, spinal mu 82.26
2e5p_A68 Protein PHF1, PHD finger protein 1; tudor domain, 82.12
2d9t_A78 Tudor domain-containing protein 3; structural geno 81.7
2e5q_A63 PHD finger protein 19; tudor domain, isoform B, st 81.53
3o70_A68 PHD finger protein 13; PHF13, structural genomics 81.47
3pnw_C77 Tudor domain-containing protein 3; FAB, structural 81.44
3s6w_A54 Tudor domain-containing protein 3; methylated argi 81.23
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 80.81
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 80.73
2wac_A218 CG7008-PA; unknown function, tudor, beta-barrel, n 80.12
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 80.03
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
Probab=100.00  E-value=8.1e-36  Score=312.63  Aligned_cols=156  Identities=51%  Similarity=0.921  Sum_probs=140.9

Q ss_pred             CcCChhhhhHHhhhcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeecC
Q 001263          931 NFLSMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDD 1010 (1112)
Q Consensus       931 ~~~~~~~~~~~l~~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~~ 1010 (1112)
                      ..+++.++++.|+++.+.+|.|++|+++||||||+++|++|++|+||+|++|+..+++.|+.. |+. .+...|+|.++.
T Consensus        35 ~~~~~~~~~~~l~~~~~~~l~V~~s~~~G~GlfA~~~I~~G~~I~EY~Gevi~~~e~~~R~~~-y~~-~~~~~Y~f~l~~  112 (192)
T 2w5y_A           35 MDLPMPMRFRHLKKTSKEAVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDKREKY-YDS-KGIGCYMFRIDD  112 (192)
T ss_dssp             SSCCHHHHHTTHHHHHHHHEEEEECSSSSEEEEESSCBCTTCEEEECCSEEEEGGGHHHHHHH-HHH-HTCCCCEEECSS
T ss_pred             CCCCcchhHHHHhccCCCcEEEEEcCCceeEEEECcccCCCCEEEEeeeeEechHHHHHHHHH-Hhh-cCCceeeeeecC
Confidence            456889999999999999999999999999999999999999999999999999999988864 543 234689999999


Q ss_pred             cceecccccCCccccCCCCCCCCceEEEEEECCeeEEEEEEccCCCCCCeEEEecCCCCCC--CCeeeecCCCCCccccC
Q 001263         1011 ERVIDATRAGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDIKQWEELTYDYRFFSID--EQLACYCGFPRCRGVVN 1088 (1112)
Q Consensus      1011 ~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~~~i~i~A~RdI~~GEELT~dY~~~~~~--~~~~C~Cgs~~Crg~~~ 1088 (1112)
                      ..+|||+..||++|||||||+|||.+..+.+++..+|+|+|+|||++||||||||++...+  ..|.|+||+++|||+||
T Consensus       113 ~~~IDa~~~Gn~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~~~~~~C~Cgs~~Crg~ln  192 (192)
T 2w5y_A          113 SEVVDATMHGNAARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNKLPCNCGAKKCRKFLN  192 (192)
T ss_dssp             SEEEECTTTCCGGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC-------CCBCCCCCTTCCSBCC
T ss_pred             ceEEECccccChhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcCCCCceeECCCCCCcCcCC
Confidence            9999999999999999999999999998889999999999999999999999999987654  58999999999999997
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2 Back     alignment and structure
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A Back     alignment and structure
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A Back     alignment and structure
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A Back     alignment and structure
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens} Back     alignment and structure
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0 Back     alignment and structure
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A* Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A* Back     alignment and structure
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A* Back     alignment and structure
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens} Back     alignment and structure
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus} Back     alignment and structure
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus} Back     alignment and structure
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N* Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens} Back     alignment and structure
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens} Back     alignment and structure
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens} Back     alignment and structure
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster} Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Back     alignment and structure
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens} Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens} Back     alignment and structure
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Back     alignment and structure
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Back     alignment and structure
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Back     alignment and structure
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1112
d2f69a2171 b.85.7.1 (A:194-364) Histone H3 K4-specific methyl 4e-28
d1mvha_269 b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (S 3e-26
d1ml9a_284 b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [T 3e-22
d2g46a1119 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth 3e-20
d2nlua1100 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, 1e-17
d2daqa197 b.34.9.2 (A:8-104) Histone-lysine N-methyltransfer 1e-17
d1h3za_108 b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fi 4e-15
d1khca_137 b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse 3e-13
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 4e-05
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 8e-05
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-04
d2d9ta160 b.34.9.1 (A:8-67) Tudor domain-containing protein 6e-04
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 0.001
d1mhna_59 b.34.9.1 (A:) Survival motor neuron protein 1, smn 0.003
d2h2ja2261 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain 0.003
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 0.003
d2diga155 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sa 0.004
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: Histone H3 K4-specific methyltransferase SET7/9 catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 4e-28
 Identities = 34/150 (22%), Positives = 51/150 (34%), Gaps = 22/150 (14%)

Query: 947  RKRLAFGKSGIH--GFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTY 1004
             +R+   +S I   G G+F+K       ++  Y G  +     D R+    N        
Sbjct: 20   SERVYVAESLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWA-LNG------N 72

Query: 1005 MFRIDDERVIDATR--------AGSIAHLINHSCEPNC-YSRVISVNGDEHIIIFAKRDI 1055
               +D+E VID             S+ H  NHS  PNC Y   +         I   R +
Sbjct: 73   TLSLDEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAV 132

Query: 1056 KQWEELTYDYRFFSIDEQLACYCGFPRCRG 1085
            +  EELT  Y +    +        P    
Sbjct: 133  EADEELTVAYGY----DHSPPGKSGPEAPE 158
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 269 Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Length = 284 Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119 Back     information, alignment and structure
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 108 Back     information, alignment and structure
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59 Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 55 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1112
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 99.95
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 99.95
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 99.89
d2daqa197 Histone-lysine N-methyltransferase NSD3 {Human (Ho 99.84
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 99.84
d2nlua1100 Hepatoma-derived growth factor, HDGF {Human (Homo 99.84
d1h3za_108 Hypothetical protein SPBC215.07c {Fission yeast (S 99.8
d1khca_137 DNA methyltransferase DNMT3B {Mouse (Mus musculus) 99.78
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.1
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.0
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 97.86
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 97.81
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 97.74
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 97.67
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 97.58
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 97.42
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 97.12
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.11
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.04
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.03
d2diga155 Lamin-b receptor {Human (Homo sapiens) [TaxId: 960 96.83
d2d9ta160 Tudor domain-containing protein 3, TDRD3 {Mouse (M 96.67
d1mhna_59 Survival motor neuron protein 1, smn {Human (Homo 95.96
d2g3ra153 p53-binding protein 1, 53BP1 {Human (Homo sapiens) 94.71
d2f5ka183 Mortality factor 4-like protein 1, MRG15 {Human (H 89.2
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 86.58
d2diqa197 Tudor and KH domain-containing protein TDRKH {Huma 86.07
d1zbdb_124 Effector domain of rabphilin-3a {Rat (Rattus norve 85.29
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 83.25
d1wema_76 Death associated transcription factor 1, Datf1 (DI 82.43
d2hqxa190 P100 co-activator, SND1 {Human (Homo sapiens) [Tax 80.82
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 80.54
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: Histone lysine methyltransferases
domain: SET domain of Clr4
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.95  E-value=9.1e-29  Score=270.25  Aligned_cols=135  Identities=29%  Similarity=0.422  Sum_probs=119.9

Q ss_pred             ChhhhhHHhhhcccceEEEEEecccCeeEEecccCCCCCeEEEEceeecChhHHhhhhHHhhhcccCCcceeEeec----
Q 001263          934 SMADKYKHMKETFRKRLAFGKSGIHGFGIFAKHPHRAGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRID---- 1009 (1112)
Q Consensus       934 ~~~~~~~~l~~~~~~~l~v~~S~~~G~GlfA~~~I~~Ge~I~eY~Gevi~~~~~~~r~~~~y~~~~~~~~y~f~~~---- 1009 (1112)
                      ...|.|+.+|++.+.+|+|++++.+||||||+++|++|+||+||.|++|+..+++.|... |..  ...+|+|.+.    
T Consensus       122 ~~~C~Nr~~q~g~~~~leV~~t~~~G~GvfA~~~I~kGt~I~eY~Gevi~~~e~~~R~~~-y~~--~~~~~~~~l~~~~~  198 (269)
T d1mvha_         122 SMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGEVITSAEAAKRDKN-YDD--DGITYLFDLDMFDD  198 (269)
T ss_dssp             CTTCTTCTGGGCCCSCEEEEECSSSSEEEEESSCBCTTCEEEECCCEEEEHHHHHHHHTT-CCS--CSCCCEEEECSSCS
T ss_pred             CCCCCCeecCCCCccCEEEEEcCCCCeEEEeCcccCCCceEEEecceEEcHHHHHHHHHh-Hhh--cCCcchhheecccc
Confidence            456899999999999999999999999999999999999999999999999999999874 432  2356887774    


Q ss_pred             -CcceecccccCCccccCCCCCCCCceEEEEEECCe----eEEEEEEccCCCCCCeEEEecCCCCCC
Q 001263         1010 -DERVIDATRAGSIAHLINHSCEPNCYSRVISVNGD----EHIIIFAKRDIKQWEELTYDYRFFSID 1071 (1112)
Q Consensus      1010 -~~~~IDa~~~Gn~aRfINHSC~PNc~~~~~~~~~~----~~i~i~A~RdI~~GEELT~dY~~~~~~ 1071 (1112)
                       ..++|||+..||++|||||||+|||.+..+.+++.    ++|+|||+|||++||||||||++..+.
T Consensus       199 ~~~~~iDa~~~GN~aRFiNHSC~PN~~~~~v~~~~~~~~~~~i~~fA~rdI~~GEELt~DYG~~~d~  265 (269)
T d1mvha_         199 ASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDF  265 (269)
T ss_dssp             SSCEEEECSSEECGGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSSS
T ss_pred             cccceeeeeecCcceEEeecCCCCCcEEEEEEecCCcCccceEEEEECCccCCCCEEEEecCCCcCC
Confidence             56799999999999999999999999999888754    689999999999999999999986443
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daqa1 b.34.9.2 (A:8-104) Histone-lysine N-methyltransferase NSD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d2nlua1 b.34.9.2 (A:1-100) Hepatoma-derived growth factor, HDGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h3za_ b.34.9.2 (A:) Hypothetical protein SPBC215.07c {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3ra1 b.34.9.1 (A:1485-1537) p53-binding protein 1, 53BP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure