Citrus Sinensis ID: 001291
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1106 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.962 | 0.741 | 0.719 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.966 | 0.744 | 0.704 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.971 | 0.744 | 0.696 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.967 | 0.751 | 0.684 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.969 | 0.743 | 0.688 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.973 | 0.735 | 0.684 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.986 | 0.748 | 0.680 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.748 | 0.679 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.969 | 0.739 | 0.667 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.956 | 0.720 | 0.678 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1639 bits (4244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/1080 (71%), Positives = 909/1080 (84%), Gaps = 16/1080 (1%)
Query: 17 SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNL 76
S+S WR V FS SSR+EDDEEALKWAA+EKLPT++RL+KGLL SQG A EVD+++L
Sbjct: 26 SNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDL 85
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
G QER+ L+ +LV V + DNEKFLLKLKNRI+RVGI LPT+EVR+EHL I+A+A++ S++
Sbjct: 86 GFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRS 145
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLL 196
LP+F F T E LLN LHIL S K+ LTILKD+SGI+KP R+TLLLGPPSSGKTTLLL
Sbjct: 146 LPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLL 205
Query: 197 ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
ALAGKLDP+LKV+G+V+YNGH + EFVP+RTAAYISQHD HIGEMTVRETL F+ARCQGV
Sbjct: 206 ALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGV 265
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
G+R+EML ELSRREKAA IKPD DID++MKAA+TEG+EANV+TDY LK+LGLDICADTMV
Sbjct: 266 GSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMV 325
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN +Q++ I GT
Sbjct: 326 GDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGT 385
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
AVISLLQPAPETYNLFDDIILLSDG IVYQGPR+ VLEFFESMGFKCP+RKGVADFLQEV
Sbjct: 386 AVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEV 445
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQ+QYW+ ++ PYRF+ +EF A+QSFHVG+KL DEL TPFDK+K H AALT +
Sbjct: 446 TSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEK 505
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
YG+GK+ELLK CT RELLLMKRNSFVY+FK Q+ + L+ MTLFFRT+M +D+ DGGI
Sbjct: 506 YGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGI 565
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
YAGALFF ++M +F+G +E++MTI KLPVFYKQRD FFP WAYAIPSWILKIP++ +E
Sbjct: 566 YAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEV 625
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVL 676
+WV L+YYVIG+DPN RF KQ+LLL+ NQM SG+FRF+GA+GR + VA TFGSFA+L
Sbjct: 626 GLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALL 685
Query: 677 VLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQV 736
+ ALGGFVLSR++VK WW W YW SP+MY+ N IL NEF G W P E+LG V
Sbjct: 686 LQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTV 745
Query: 737 LESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796
++SR FF AYWYW+G+GAL GF ++ N ++LAL +LN F+KP+AV+ E+ E+ E
Sbjct: 746 VKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLPEDGENAEN--- 802
Query: 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMP 856
GE + + S++E S K+GMVLPFEP+S+TFD+VVYSVDMP
Sbjct: 803 ----------GEVSSQITSTDGGDSISE---SQNNKKGMVLPFEPHSITFDDVVYSVDMP 849
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
Q+MK QG ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I+
Sbjct: 850 QEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIK 909
Query: 917 ISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
ISGYPKKQETFARISGYCEQNDIHSP+VTVYESL YSAWLRLP +V+ +TRKMF++EVME
Sbjct: 910 ISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVME 969
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR
Sbjct: 970 LVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1029
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCP 1096
TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG HSCHLI YFE P
Sbjct: 1030 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNP 1089
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1600 bits (4143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1088 (70%), Positives = 905/1088 (83%), Gaps = 19/1088 (1%)
Query: 9 LASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEA 68
+ + S+S WR FS S+R+EDDEEALKWAA+EKLPTY+RL+KG+L SQG A
Sbjct: 22 MRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGAA 81
Query: 69 FEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEA 128
EVDV + G+ ER+ L+ +LV V + DNEKFLLKLKNRI+RVGI P++EVRFEHL I+A
Sbjct: 82 AEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNIDA 141
Query: 129 EAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPS 188
+A++ S+ALP+FT F + E LL+ +HILPS K+ +TILKDVSGIVKP R+TLLLGPP
Sbjct: 142 DAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPPG 201
Query: 189 SGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLD +LKV+G+VTYNGH + EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 202 SGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLE 261
Query: 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308
F+ARCQGVG+RYEML ELSRREKAA IKPD DID+FMKAASTEG+EA V+TDY LK+LGL
Sbjct: 262 FSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILGL 321
Query: 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
DICADTMVGD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN KQ
Sbjct: 322 DICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLKQ 381
Query: 369 NIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKG 428
++ I GTA+ISLLQPAPETYNLFDDIILLSDG IVY+GPRE VLEFFESMGFKCP+RKG
Sbjct: 382 SVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERKG 441
Query: 429 VADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSH 488
ADFLQEVTSKKDQ+QYW +D PYRF+ +EF A+QSFHVG+K+SDEL+T FDKSKSH
Sbjct: 442 AADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKSH 501
Query: 489 RAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548
AALTT+ YG+GKR+LLK CT RELLLM+RNSFVY+FK Q+ I L+ MT+FFRTKM +
Sbjct: 502 PAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMPR 561
Query: 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILK 608
DS DGGIY+GALFF ++M +F+G +E+ MT+ KLPVFYKQRDF F+P WAYAIPSWILK
Sbjct: 562 DSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWILK 621
Query: 609 IPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAY 668
IP++F E +WVFL+YYV+G+DPN GRFFKQ+LLLL NQM S LFRF+ A+GR + VA
Sbjct: 622 IPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVAS 681
Query: 669 TFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS 728
TFG+FA+L+ ALGGF+L+R +VK WW W YW+SP+MY+ N IL NEF G WK
Sbjct: 682 TFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAGG 741
Query: 729 TESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788
TE LG V+ +R FF AYWYW+G+GAL GFI++ N+ +++AL +LN F+KP+A I++E
Sbjct: 742 TEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDES 801
Query: 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDE 848
E++E ++ + Q+++ E + AS KK+GMVLPF+P+S+TFDE
Sbjct: 802 ENNESES----SPQITSTQEGDS---------------ASENKKKGMVLPFDPHSITFDE 842
Query: 849 VVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
VVYSVDMP +M+ G +++LVLL VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 843 VVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 902
Query: 909 GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK 968
GYI G I+ISGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL YSAWLRLP +VN E R
Sbjct: 903 GYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNEEKRM 962
Query: 969 MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
MF+EEVM+LVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 963 MFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1022
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHL 1088
RAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPLG SCHL
Sbjct: 1023 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQSCHL 1082
Query: 1089 ISYFEVCP 1096
I YFE P
Sbjct: 1083 IKYFESIP 1090
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1579 bits (4089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 754/1083 (69%), Positives = 902/1083 (83%), Gaps = 8/1083 (0%)
Query: 15 HRSHSRWR--TGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVD 72
R+ S WR +G AF S REEDDEEALKWAAIEKLPTY+R++KG+LT G EVD
Sbjct: 17 RRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEEVD 74
Query: 73 VSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFL 132
+ LGLQER+ LI +LV E DNE+FLLKL++R+ERVGI PT+EVRFE+L+I+AEA++
Sbjct: 75 IGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYV 134
Query: 133 ASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKT 192
++ +P+FT FF+ D+L+ + I+ S K+ ++IL D+SGI++PGR++LLLGPP SGKT
Sbjct: 135 GNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKT 194
Query: 193 TLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAAR 252
+LLLALAGKLD +LKVSGRVTYNGH+MDEFVP+RT+AYI QHD HIGEMTVRETLAF+AR
Sbjct: 195 SLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSAR 254
Query: 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312
CQGVGTRY+MLTELSRREK A IKPDPDIDV+MKA S EG+E+ V+TDY LK+LGL+ICA
Sbjct: 255 CQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEICA 313
Query: 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI 372
DTMVGD M RG+SGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN +Q++HI
Sbjct: 314 DTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHI 373
Query: 373 NSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
GTA+I+LLQPAPETY+LFDDI+LLS+GQIVYQGPRE +LEFFE+MGFKCP+RKGVADF
Sbjct: 374 LGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADF 433
Query: 433 LQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAAL 492
LQEVTS+KDQ QYW +D PYR++ V +F AF+ FHVG+ L EL+ PFD++++H AAL
Sbjct: 434 LQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAAL 493
Query: 493 TTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVT 552
TT YG+ K EL KAC SRE LLMKRNSFVYIFK++Q+ + + MT+F RTKMH+ SV
Sbjct: 494 TTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVE 553
Query: 553 DGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPIS 612
DG I+ GA+F +V LF+GFAE++M+I KLP+FYKQRD F+P WAYA+P+W+LKIPIS
Sbjct: 554 DGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPIS 613
Query: 613 FLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGS 672
FLE AVW+ ++YYV+G+DPN RFF+ Y+LL+ +QM SGLFR L A+GR +VVA TFGS
Sbjct: 614 FLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGS 673
Query: 673 FAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT-PT-STE 730
FA L+LL LGGF++SRE +KKWW W YWSSP+MYAQN I NEFLGHSW K PT S +
Sbjct: 674 FAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSND 733
Query: 731 SLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFES 790
+LGVQVL+ R F A WYW+G+GAL G+I+L N+ F L L +L+ K +AV++EE
Sbjct: 734 TLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELR 793
Query: 791 DEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVV 850
++ NR G V+L G + + N ++++ E + +KRGMVLPF P S+TFD +
Sbjct: 794 EKHVNRTGENVELLTLG-TDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIR 852
Query: 851 YSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 910
YSVDMPQ+MK +GV ED+L+LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 853 YSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 912
Query: 911 ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
I GDI ISGYPKKQETFARI+GYCEQNDIHSP VTVYESL YSAWLRLP EV+SE RKMF
Sbjct: 913 IEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMF 972
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+EEVMELVEL LR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 973 VEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1032
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLIS 1090
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLGH+SCHLI+
Sbjct: 1033 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLIN 1092
Query: 1091 YFE 1093
YFE
Sbjct: 1093 YFE 1095
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1564 bits (4050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 749/1094 (68%), Positives = 883/1094 (80%), Gaps = 24/1094 (2%)
Query: 3 ESHEIYLASTTSHRSHSRWRTGS-VGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL 61
E + AS + R+ S W+ S FS SSREEDDEEAL+WAA+EKLPT++RL+KG+L
Sbjct: 2 EGTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGIL 61
Query: 62 TTSQ--GEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV 119
T S G E+D+ LG Q+ ++L+ +L+ V + ++EK L KLK RI+RVGI LPT+EV
Sbjct: 62 TASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEV 121
Query: 120 RFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGR 179
RF+HL +EAE + +ALP+F F + + LN LH++P+ KK TIL DVSGIVKPGR
Sbjct: 122 RFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGR 181
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+ LLLGPPSSGKTTLLLALAGKLD LK +GRVTYNGH M+EFVP+RTAAYI Q+D HIG
Sbjct: 182 MALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIG 241
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
EMTVRET A+AAR QGVG+RY+MLTEL+RREK A IKPDPDID+FMKA ST GE+ NV+T
Sbjct: 242 EMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMT 301
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CADTMVGD+M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTT 361
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+QIVN + +HI +GTA+ISLLQPAPET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+M
Sbjct: 362 YQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETM 421
Query: 420 GFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479
GFKCP RKGVADFLQEVTSKKDQ QYWA +D PYRF++V+EF AFQSFHVG+++ DEL
Sbjct: 422 GFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELA 481
Query: 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMT 539
PFDK+KSH AALTTK YGVG +EL+K SRE LLMKRNSFVY FK Q+ + + MT
Sbjct: 482 LPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMT 541
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWA 599
LFFRT+M K + DG +Y GALFF ++M +F+G +E+SMTI KLPVFYKQRD F+P W
Sbjct: 542 LFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWV 601
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
Y++P W+LKIPISF+E A+ F++YYVIG+DPN GR FKQY+LL+ NQM S LF+ + A
Sbjct: 602 YSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAA 661
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719
+GRN++VA TFG+FA+LV ALGG VLSR+++KKWW W YW SP+MY QN ILANEF GH
Sbjct: 662 LGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGH 721
Query: 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEK 779
SW + S+E+LGV L+SR F HAYWYW+G GAL GF++L N GF LALTFLN K
Sbjct: 722 SWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGK 781
Query: 780 PRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
P+AVI EE SDE E S+ S EA KKRGMVLPF
Sbjct: 782 PQAVIAEEPASDET---------------------ELQSARSEGVVEAGANKKRGMVLPF 820
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EP+S+TFD VVYSVDMPQ+M QG ED+LVLL GV+GAFRPGVLTALMGVSGAGKTTLM
Sbjct: 821 EPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLM 880
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI G+I ISGYPK Q+TFARISGYCEQ DIHSP VTVYESL YSAWLRLP
Sbjct: 881 DVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLP 940
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
EV+ RK+FIEEVMELVEL PLRQ+LVGLPG +GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 941 KEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFM 1000
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL+KRGG E+YVG
Sbjct: 1001 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVG 1060
Query: 1080 PLGHHSCHLISYFE 1093
PLGH S HLI+YFE
Sbjct: 1061 PLGHESTHLINYFE 1074
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1543 bits (3994), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 744/1080 (68%), Positives = 879/1080 (81%), Gaps = 8/1080 (0%)
Query: 15 HRSHSRWRTGSVG-AFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDV 73
RS S WR+ S F SSREEDDEEALKWAA+EKLPTY+RL+KG++T GE EVD+
Sbjct: 20 RRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEVDI 79
Query: 74 SNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLA 133
LG QER+ L+ KLV E DNE+FLLKL+NR+ERVGI PT+EVRFEHL I AEAF+
Sbjct: 80 QGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAFVG 139
Query: 134 SKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193
++ +P+ FF +L+ LH++PS K+ ++IL DVSGI+KP R+TLLLGPP +GKTT
Sbjct: 140 NRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGKTT 199
Query: 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253
LLLALAGKLD +LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAF++RC
Sbjct: 200 LLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSSRC 259
Query: 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313
QGVGTRYEMLTELSRREK A IKPDPD+DV+MKA + EG+E+ V+TDY LK+LGLDICAD
Sbjct: 260 QGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDICAD 318
Query: 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373
TMVGD M RG+SGGQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN +Q++HI
Sbjct: 319 TMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVHIL 378
Query: 374 SGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
GTA+I+LLQPAPETY+LFDDI+LLSDGQIVYQGPRE VLEFFESMGFKCP+RKGVADFL
Sbjct: 379 GGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVADFL 438
Query: 434 QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALT 493
QEVTS+KDQ+QYW ++ PYRFV V EF AF+SFHVG KL +EL TPFD+S++H AALT
Sbjct: 439 QEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAALT 498
Query: 494 TKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTD 553
T YG+ K ELLKAC RE LLMKRNSFVYIFK++Q+ + L+ MT+FFRTK+ ++ + D
Sbjct: 499 TSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGLED 558
Query: 554 GGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISF 613
I+ GA+F +V LF+GFAE++M+I KLPVFYKQRD F+PPWAYA+P+WILKIPISF
Sbjct: 559 ATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPISF 618
Query: 614 LEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSF 673
+E VW+ ++YYVIG+DPN R F+ YLLL+ +Q+ SGLFR L A+GR++VVA TFG+F
Sbjct: 619 VECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFGAF 678
Query: 674 AVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLG 733
A LVLL LGGF+++RE++KK+W W YWSSP+MYAQN I NEFLGHSW K + ++LG
Sbjct: 679 AQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQTLG 738
Query: 734 VQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQ 793
+ L +R F WYW+G+GAL G+++L N F L L +L+ K + ++EE +++
Sbjct: 739 ERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQEKE 798
Query: 794 DNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSV 853
NR G V+L+ G + S E +K+GMVLPF P S+TFD V YSV
Sbjct: 799 ANRTGANVELATRGSAA------TSDGGSVEIRKDGNRKKGMVLPFTPLSITFDNVKYSV 852
Query: 854 DMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG 913
DMPQ+MK +GV EDKL+LL GVSGAFRPGVLTALMGVSG GKTTLMDVLAGRKTGGYI G
Sbjct: 853 DMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTGGYIEG 912
Query: 914 DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
DIRISGYPK QETFARISGYCEQNDIHSP VTVYESL YSAWLRLP EV+ + RKMF++E
Sbjct: 913 DIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRKMFVDE 972
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
VM+LVEL LR SLVGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI
Sbjct: 973 VMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1032
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
VMR VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLG S HLI YFE
Sbjct: 1033 VMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHLIKYFE 1092
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1520 bits (3935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1092 (68%), Positives = 870/1092 (79%), Gaps = 15/1092 (1%)
Query: 17 SHSRWRTGSVGAFSMSSRE------EDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE 70
+ S W + G FS S EDDEEAL+WAA+EKLPTY+R+++ +L +
Sbjct: 25 AASMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGG 84
Query: 71 -------VDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEH 123
VDV +LG QER+ L+ +LV V E DNE+FLLKLK RI+RVGI +PT+EVRFEH
Sbjct: 85 GEAGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEH 144
Query: 124 LTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLL 183
L EAE + + LP+ T E N L ILP+ K+ + IL DVSGIVKP R+TLL
Sbjct: 145 LEAEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLL 204
Query: 184 LGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243
LGPP SGKTTLLLALAG+L +K SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTV
Sbjct: 205 LGPPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTV 264
Query: 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYL 303
RETL+F+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKA++ EG+E N+ITDY L
Sbjct: 265 RETLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYIL 324
Query: 304 KVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLDICADTMVGD+M RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 325 KILGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIV 384
Query: 364 NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKC 423
+Q IHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFE MGFKC
Sbjct: 385 KSLRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKC 444
Query: 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483
P+RKGVADFLQEVTS+KDQ+QYW D+PYR+V V++F +AFQSFH G+ +++EL TPFD
Sbjct: 445 PERKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFD 504
Query: 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFR 543
KSK+H AALTT YGV ELLKA RE LLMKRNSFVYIF+ Q+ ++ + MT+FFR
Sbjct: 505 KSKNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFR 564
Query: 544 TKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIP 603
TKMH+DSVTDG I+ GALFF+++M +F+G +E+ +TI KLPVF+KQRD FFP W Y IP
Sbjct: 565 TKMHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIP 624
Query: 604 SWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663
SWILKIP+SF+E +VF+SYYVIG+DP+AGRFFKQYLL+LA NQM + LFRF+G RN
Sbjct: 625 SWILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARN 684
Query: 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723
++VA FGSF +L+ + LGGF+L RE+VKKWW W YW SP+MYAQN I NEFLGHSW K
Sbjct: 685 MIVANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDK 744
Query: 724 F--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781
S E+LGVQ L SR F A WYW+G GAL GFI+L N F LALT+L + K +
Sbjct: 745 VLNNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQ 804
Query: 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEP 841
++EE ++Q N G + + S N N+ +S A+ S P +RGMVLPF P
Sbjct: 805 PSVSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAP 864
Query: 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 901
SLTFD + YSVDMPQ+MK G+ ED+L LL GVSG+FRPGVLTALMGVSGAGKTTLMDV
Sbjct: 865 LSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDV 924
Query: 902 LAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
LAGRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTV ESL +SAWLRLP +
Sbjct: 925 LAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKD 984
Query: 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
V+S TRKMFIEEVMELVELKPLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 985 VDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1044
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPL
Sbjct: 1045 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPL 1104
Query: 1082 GHHSCHLISYFE 1093
GH S LI YFE
Sbjct: 1105 GHQSSELIKYFE 1116
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1517 bits (3928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1111 (68%), Positives = 880/1111 (79%), Gaps = 20/1111 (1%)
Query: 1 MEESHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGL 60
+++ + L + S S WR G FS SSREEDDEEAL+WAA+EKLPTY+R+++ +
Sbjct: 7 IQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAI 65
Query: 61 L-------TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIV 113
L G VDV LG +ER+ L+ +LV V + DNEKFLLKLK+R++RVGI
Sbjct: 66 LPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGID 125
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
+PT+EVRFEHL EAE + + LP+ T E+ N L ILP+ K+ + +L DVSG
Sbjct: 126 MPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSG 185
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
I+KP R+TLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQ
Sbjct: 186 IIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQ 245
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
HD HIGEMTVRETLAF+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKAA+ G+
Sbjct: 246 HDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQ 305
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
EANV TDY LK+LGL+ICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTG
Sbjct: 306 EANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTG 365
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQIVN +Q +HI GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL
Sbjct: 366 LDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVL 425
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQK 473
EFFESMGFKCP RKGVADFLQEVTSKKDQ QYWA D+PYRFV V+EFV+AFQSFH G+
Sbjct: 426 EFFESMGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRA 485
Query: 474 LSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSI 533
+++EL PFDKSKSH AAL T YG +ELLKA RE+LLMKRNSFVY+F+ Q+ +
Sbjct: 486 IANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVV 545
Query: 534 TLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFK 593
+L+ MTLFFRTKM +DSVT GGIY GALFF ++M +F+GF+E+++T+ KLPVF+KQRD
Sbjct: 546 SLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLL 605
Query: 594 FFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGL 653
F+P W+Y IPSWILKIPI+F+E +VFL+YYVIG+D N G FFKQYLL+LA NQM L
Sbjct: 606 FYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSL 665
Query: 654 FRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713
FRF+G RN++VA F SF +L+ + LGGF+L+RE+VKKWW W YW SP+MYAQN I
Sbjct: 666 FRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISV 725
Query: 714 NEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
NE +GHSW K + S E+LGVQVL+SR F A WYW+G GA+ GF +L N F LAL
Sbjct: 726 NELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLAL 785
Query: 772 TFLNQFEKPRAVITEEFESDEQDN---RIGGTVQLSNCGESGNDNRERNSSS---SLTEA 825
T+L + R ++EE +++ N I G V LS SG+ R + + S
Sbjct: 786 TYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLS----SGSTRRPMGNGTENDSTIVD 841
Query: 826 EASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLT 885
+ + +RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLT
Sbjct: 842 DDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLT 901
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945
ALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VT
Sbjct: 902 ALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVT 961
Query: 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLT 1005
VYESL +SAWLRLP +V+S TRKMFIEEVMELVELK LR +LVGLPGVNGLSTEQRKRLT
Sbjct: 962 VYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLT 1021
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDE
Sbjct: 1022 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDE 1081
Query: 1066 LFLMKRGGREVYVGPLGHHSCHLISYFEVCP 1096
LFLMKRGG E+Y GPLGHHS LI YFE P
Sbjct: 1082 LFLMKRGGEEIYAGPLGHHSSELIKYFESIP 1112
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1515 bits (3922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1111 (67%), Positives = 879/1111 (79%), Gaps = 20/1111 (1%)
Query: 1 MEESHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGL 60
+++ + L + S S WR G FS SSREEDDEEAL+WAA+EKLPTY+R+++ +
Sbjct: 7 IQKVASMRLGGSMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAI 65
Query: 61 L-------TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIV 113
L G VDV LG +ER+ L+ +LV V + DNEKFLLKLK+R++RVGI
Sbjct: 66 LPLGGDDGAGDGGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGID 125
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
+PT+EVRFEHL EAE + + LP+ T E+ N L ILP+ K+ + +L DVSG
Sbjct: 126 MPTIEVRFEHLEAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSG 185
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
I+KP R+TLLLGPP SGKTTLLLALAG+L LK SG+VTYNGH M+EFVPERTAAYISQ
Sbjct: 186 IIKPRRMTLLLGPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQ 245
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
HD HIGEMTVRETLAF+ARCQGVG+R++MLTELSRREKAA IKPD DID FMKAA+ G+
Sbjct: 246 HDLHIGEMTVRETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQ 305
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
EANV TDY LK+LGL+ICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTG
Sbjct: 306 EANVNTDYILKILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTG 365
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQIVN +Q +HI GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL
Sbjct: 366 LDSSTTFQIVNSLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVL 425
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQK 473
EFFES GFKCP RKGVADFLQEVTSKKDQ QYWA D+PYRFV V+EFV+AFQSFH G+
Sbjct: 426 EFFESTGFKCPDRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRA 485
Query: 474 LSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSI 533
+++EL PFDKSKSH AAL T YG +ELLKA RE+LLMKRNSFVY+F+ Q+ +
Sbjct: 486 IANELAVPFDKSKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVV 545
Query: 534 TLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFK 593
+L+ MTLFFRTKM +DSVT GGIY GALFF ++M +F+GF+E+++T+ KLPVF+KQRD
Sbjct: 546 SLIAMTLFFRTKMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLL 605
Query: 594 FFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGL 653
F+P W+Y IPSWILKIPI+F+E +VFL+YYVIG+D N G FFKQYLL+LA NQM L
Sbjct: 606 FYPAWSYTIPSWILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSL 665
Query: 654 FRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713
FRF+G RN++VA F SF +L+ + LGGF+L+RE+VKKWW W YW SP+MYAQN I
Sbjct: 666 FRFIGGAARNMIVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISV 725
Query: 714 NEFLGHSWKKF--TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
NE +GHSW K + S E+LGVQVL+SR F A WYW+G GA+ GF +L N F LAL
Sbjct: 726 NELMGHSWNKIVNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLAL 785
Query: 772 TFLNQFEKPRAVITEEFESDEQDN---RIGGTVQLSNCGESGNDNRERNSSS---SLTEA 825
T+L + R ++EE +++ N I G V LS SG+ R + + S
Sbjct: 786 TYLRPYGNSRQSVSEEELKEKRANLNGEIVGDVHLS----SGSTRRPMGNGTENDSTIVD 841
Query: 826 EASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLT 885
+ + +RGMVLPF P SL+FD V YSVDMPQ+MK QGV +D+L LL GVSG+FRPGVLT
Sbjct: 842 DDTEVTQRGMVLPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLT 901
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945
ALMGVSGAGKTTLMDVLAGRKTGGYI G I ISGYPKKQETFAR+SGYCEQNDIHSP VT
Sbjct: 902 ALMGVSGAGKTTLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVT 961
Query: 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLT 1005
VYESL +SAWLRLP +V+S TRKMFIEEVMELVELK LR +LVGLPGVNGLSTEQRKRLT
Sbjct: 962 VYESLLFSAWLRLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLT 1021
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDE
Sbjct: 1022 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDE 1081
Query: 1066 LFLMKRGGREVYVGPLGHHSCHLISYFEVCP 1096
LFLMKRGG E+Y GPLGHHS LI YFE P
Sbjct: 1082 LFLMKRGGEEIYAGPLGHHSSELIKYFESIP 1112
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1508 bits (3905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 732/1097 (66%), Positives = 877/1097 (79%), Gaps = 25/1097 (2%)
Query: 15 HRSHSRWRTGSVGAFSMSSR----EEDDEEALKWAAIEKLPTYNRLKKGLLTTSQ----- 65
R S WR+G FS SS E+DDEEAL+WAA+E+LPTY+R+++G+L S
Sbjct: 12 RREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGA 70
Query: 66 -GEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHL 124
GE EVDV LG +E + LI +LV + D+E+FLLKL+ R++RVGI PT+EVRFE+L
Sbjct: 71 GGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENL 130
Query: 125 TIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLL 184
+EA+ + ++ LP+ T E + N LHILP+ K+ +T+L DVSGI+KP R+TLLL
Sbjct: 131 EVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLL 190
Query: 185 GPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 191 GPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVR 250
Query: 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304
ETLAF+ARCQGVGTRYEMLTEL+RREKAA IKPD DID++MKA++ G+E++V+TDY LK
Sbjct: 251 ETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILK 310
Query: 305 VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLDICADT+VG+EM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN
Sbjct: 311 ILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVN 370
Query: 365 CFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
+Q IHI GTAVISLLQPAPETYNLFDDIILLSDGQ+VYQGPRE VLEFFE MGF+CP
Sbjct: 371 SLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCP 430
Query: 425 KRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK 484
RKGVADFLQEVTS+KDQ QYW +DRPYRFV V++F AF+SFHVG+ + +EL PFD+
Sbjct: 431 ARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDR 490
Query: 485 SKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRT 544
++SH AAL T YGV ++ELLKA RELLLMKRN+F+YIFK + + + L+ MT FFRT
Sbjct: 491 TRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRT 550
Query: 545 KMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPS 604
M D G IY GAL+F + +F+GFAE++MT++KLPVF+KQRD FFP WAY IPS
Sbjct: 551 SMRHDR-DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPS 609
Query: 605 WILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNL 664
WIL+IPI+FLE V+VF++YYVIG+DP+ RFFKQYLLLLA NQM S LFRF+ IGR++
Sbjct: 610 WILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDM 669
Query: 665 VVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKF 724
VV++TFG ++L ALGGF+L+R +VKKWW W YW SP+ YAQN I NEFLGHSW +
Sbjct: 670 VVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQI 729
Query: 725 TPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVI 784
P +LGV VL+SR F A WYW+GLGAL G+ LL N+ + +AL+ L+ F A +
Sbjct: 730 LPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASM 789
Query: 785 TEEFESDEQDNRIGGTVQLSNCGESGNDNRER--------NSSSSLTEAEASHPKKRGMV 836
+E+ ++ N G V+ G+ +R++ + +S + A++S +K GMV
Sbjct: 790 SEDALKEKHANLTGEVVE----GQKDTKSRKQELELSHIADQNSGINSADSSASRK-GMV 844
Query: 837 LPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 896
LPF P S++F++V YSVDMP+ MK QG+ ED+L+LL GVSG+FRPGVLTALMGVSGAGKT
Sbjct: 845 LPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKT 904
Query: 897 TLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWL 956
TLMDVLAGRKTGGYI GDIRISGYPKKQETFARISGYCEQNDIHSP VTVYESL +SAWL
Sbjct: 905 TLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWL 964
Query: 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016
RLP EV+SE RKMFIEEVM+LVEL LR +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 965 RLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1024
Query: 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+
Sbjct: 1025 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1084
Query: 1077 YVGPLGHHSCHLISYFE 1093
YVGP+G +S LI YFE
Sbjct: 1085 YVGPVGQNSSKLIEYFE 1101
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1507 bits (3902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 727/1072 (67%), Positives = 857/1072 (79%), Gaps = 14/1072 (1%)
Query: 35 EEDDEEALKWAAIEKLPTYNRLKKGLL-----------TTSQGEAFEVDVSNLGLQERQR 83
EEDDEEAL+WAA++KLPTY+R++ +L G VDV +LG ER+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKF 143
L+ +LV V + DNE+FLLKLK RI RVGI +PT+EVRFEHL +EAE + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 FTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203
T E+ N L ILP+ K+ L IL D+SGI+KP R+TLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRLK 229
Query: 204 PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEML 263
LK SG+VTYNGH M++FVP+RTAAYISQHD HIGEMTVRETL+F+ARCQGVG+R++ML
Sbjct: 230 -DLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323
TEL+RREKAA IKPD D+D FMKA++ EG+E+N+ITDY LK+LGL+ICADTMVGD+M RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ+KRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV +Q IHI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQE 443
PAPETY+LFDDIILLSDG IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTS+KDQ+
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRE 503
QYWA D+PYR+V ++EF +AFQSFH G+ +++EL TPFDKSKSH AALTT YGV E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFF 563
LLKA RELLL+KRNSFVYIF+ IQ+ +++ + MT+FFRTKMH+DSV DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 TIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLS 623
++M + +G +E+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+E + F+S
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGG 683
YYVIG+DPN GRFFKQYLL+LA +QM + LFRF+G RNL+VA FGSF +L+ + LGG
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 684 FVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKF--TPTSTESLGVQVLESRE 741
F+L+R++V KWW W YW SP+MYAQN + NEFLGHSW K S E+LGVQ L SR
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 742 FFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
F A WYW+G GAL GFI+L N+ F LALT+L K + I+EE ++Q N G +
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGNVL 828
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
+ S N ++ + A+ S P +RGMVLPF P SLTF+++ YSVDMPQ+MK
Sbjct: 829 DVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEMKA 888
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
G+ ED+L LL GVSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI G+I ISGYP
Sbjct: 889 HGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISGYP 948
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
KKQETFAR+SGYCEQNDIHSP VTV ESL +SAWLRLP +V+S TRKMFIEEVMELVELK
Sbjct: 949 KKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVELK 1008
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR +LVGLPGVNGLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 1009 PLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1068
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
V+TGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGPLGHHS LI YFE
Sbjct: 1069 VNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFE 1120
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1106 | ||||||
| 359482991 | 1445 | PREDICTED: pleiotropic drug resistance p | 0.985 | 0.754 | 0.739 | 0.0 | |
| 359482993 | 1430 | PREDICTED: pleiotropic drug resistance p | 0.976 | 0.755 | 0.742 | 0.0 | |
| 359482989 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.972 | 0.754 | 0.742 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.980 | 0.345 | 0.736 | 0.0 | |
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.977 | 0.756 | 0.740 | 0.0 | |
| 356550580 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.969 | 0.751 | 0.729 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.959 | 0.646 | 0.735 | 0.0 | |
| 359482642 | 1429 | PREDICTED: pleiotropic drug resistance p | 0.973 | 0.753 | 0.734 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.971 | 0.753 | 0.728 | 0.0 | |
| 255572795 | 1437 | ATP-binding cassette transporter, putati | 0.981 | 0.755 | 0.732 | 0.0 |
| >gi|359482991|ref|XP_003632876.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 810/1095 (73%), Positives = 930/1095 (84%), Gaps = 5/1095 (0%)
Query: 4 SHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTT 63
+ EIY A+ + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 3 TAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMG 62
Query: 64 SQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEH 123
SQG A EVDV NLG QE+Q L+ +LV + E DNEKFLL+L+NRIERVGI +P +EVRFEH
Sbjct: 63 SQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEH 122
Query: 124 LTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLL 183
LTI+AEAF+ S+ALPSF F ED L L ILPS ++ TIL DVSGI+KP R+TLL
Sbjct: 123 LTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLL 182
Query: 184 LGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243
LGPPSSGKTTLLLAL+GKLDP+LKV+GRVTYNGH MDEFVP+RTAAYISQHD HIGEMTV
Sbjct: 183 LGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTV 242
Query: 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYL 303
RETLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY L
Sbjct: 243 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 302
Query: 304 KVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIV
Sbjct: 303 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIV 362
Query: 364 NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKC 423
NC KQ IHI +GTAVISLLQPAPETYNLFDDIILLSDG+I+YQGPRE VLEFFES GF+C
Sbjct: 363 NCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRC 422
Query: 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483
P+RKGVADFLQEVTSKKDQ+QYWA K+ PYRFV V+EF AFQSFH G+K+ DEL +P+D
Sbjct: 423 PERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYD 482
Query: 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFR 543
K+KSH AALTTK YGV K+ELL A SRE LLMKRNSFVY+FKL Q+ + ++ MTLF R
Sbjct: 483 KTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLR 542
Query: 544 TKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIP 603
T+MHK+SV DG IY GALFFT+VM +F+G AE++M I KLPVFYKQRD F+P WAYA+P
Sbjct: 543 TEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALP 602
Query: 604 SWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663
+WILKIPI+F+E VWVF++YYVIG+DPN R F+QYLLLL NQM SGLFR + + GRN
Sbjct: 603 TWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRN 662
Query: 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723
++V+ TFG+F +L+LLALGGF+LS ++VKKWW W YW SP+MYAQN I+ NEFLGHSWKK
Sbjct: 663 MIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKK 722
Query: 724 FTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAV 783
STESLGV VL +R FF AYWYW+G GALFGFILL N G+ L L FLN F+KP+AV
Sbjct: 723 NVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAV 782
Query: 784 ITEEFESDEQDNRIGGTVQLSNCGESGND-NRERNSSSSLTEAE----ASHPKKRGMVLP 838
I EE ++ E +I + + S+ + G + R +S+SS E A+H KK+GMVLP
Sbjct: 783 IVEESDNAETGGQIELSQRNSSIDQRGEEIGRSISSTSSAVREEAVAGANHNKKKGMVLP 842
Query: 839 FEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL 898
F+PYS+TFD++ YSVDMP++MK QGV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTL
Sbjct: 843 FQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTL 902
Query: 899 MDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958
MDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRL
Sbjct: 903 MDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRL 962
Query: 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018
P +V SETR+MFIEEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIF
Sbjct: 963 PSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1022
Query: 1019 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078
MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+E+YV
Sbjct: 1023 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYV 1082
Query: 1079 GPLGHHSCHLISYFE 1093
GPLG +SCHLI+YFE
Sbjct: 1083 GPLGRYSCHLINYFE 1097
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482993|ref|XP_002285178.2| PREDICTED: pleiotropic drug resistance protein 1 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1691 bits (4378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1090 (74%), Positives = 926/1090 (84%), Gaps = 10/1090 (0%)
Query: 4 SHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTT 63
+ EIY A+ + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 3 TAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMG 62
Query: 64 SQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEH 123
SQG A EVDV NLG QE+Q L+ +LV + E DNEKFLL+L+NRIERVGI +P +EVRFEH
Sbjct: 63 SQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEH 122
Query: 124 LTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLL 183
LTI+AEAF+ S+ALPSF F ED L L ILPS ++ TIL DVSGI+KP R+TLL
Sbjct: 123 LTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLL 182
Query: 184 LGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243
LGPPSSGKTTLLLAL+GKLDP+LKV+GRVTYNGH MDEFVP+RTAAYISQHD HIGEMTV
Sbjct: 183 LGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTV 242
Query: 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYL 303
RETLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY L
Sbjct: 243 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 302
Query: 304 KVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIV
Sbjct: 303 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIV 362
Query: 364 NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKC 423
NC KQ IHI +GTAVISLLQPAPETYNLFDDIILLSDG+I+YQGPRE VLEFFES GF+C
Sbjct: 363 NCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRC 422
Query: 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483
P+RKGVADFLQEVTSKKDQ+QYWA K+ PYRFV V+EF AFQSFH G+K+ DEL +P+D
Sbjct: 423 PERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYD 482
Query: 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFR 543
K+KSH AALTTK YGV K+ELL A SRE LLMKRNSFVY+FKL Q+ + ++ MTLF R
Sbjct: 483 KTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLR 542
Query: 544 TKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIP 603
T+MHK+SV DG IY GALFFT+VM +F+G AE++M I KLPVFYKQRD F+P WAYA+P
Sbjct: 543 TEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALP 602
Query: 604 SWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663
+WILKIPI+F+E VWVF++YYVIG+DPN R F+QYLLLL NQM SGLFR + + GRN
Sbjct: 603 TWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRN 662
Query: 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723
++V+ TFG+F +L+LLALGGF+LS ++VKKWW W YW SP+MYAQN I+ NEFLGHSWKK
Sbjct: 663 MIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKK 722
Query: 724 FTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAV 783
STESLGV VL +R FF AYWYW+G GALFGFILL N G+ L L FLN F+KP+AV
Sbjct: 723 NVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAV 782
Query: 784 ITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYS 843
I EE ++ E GG ++LS N + ++S A A+H KK+GMVLPF+PYS
Sbjct: 783 IVEESDNAE----TGGQIELS------QRNSSIDQAASTAVAGANHNKKKGMVLPFQPYS 832
Query: 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903
+TFD++ YSVDMP++MK QGV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 833 ITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 892
Query: 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963
GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP +V
Sbjct: 893 GRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVK 952
Query: 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
SETR+MFIEEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 953 SETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1012
Query: 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083
SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+E+YVGPLG
Sbjct: 1013 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGR 1072
Query: 1084 HSCHLISYFE 1093
+SCHLI+YFE
Sbjct: 1073 YSCHLINYFE 1082
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482989|ref|XP_003632875.1| PREDICTED: pleiotropic drug resistance protein 1 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1690 bits (4377), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 809/1090 (74%), Positives = 925/1090 (84%), Gaps = 14/1090 (1%)
Query: 4 SHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTT 63
+ EIY A+ + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 3 TAEIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMG 62
Query: 64 SQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEH 123
SQG A EVDV NLG QE+Q L+ +LV + E DNEKFLL+L+NRIERVGI +P +EVRFEH
Sbjct: 63 SQGAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEH 122
Query: 124 LTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLL 183
LTI+AEAF+ S+ALPSF F ED L L ILPS ++ TIL DVSGI+KP R+TLL
Sbjct: 123 LTIDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLL 182
Query: 184 LGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243
LGPPSSGKTTLLLAL+GKLDP+LKV+GRVTYNGH MDEFVP+RTAAYISQHD HIGEMTV
Sbjct: 183 LGPPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTV 242
Query: 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYL 303
RETLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY L
Sbjct: 243 RETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTL 302
Query: 304 KVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV 363
K+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIV
Sbjct: 303 KILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIV 362
Query: 364 NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKC 423
NC KQ IHI +GTAVISLLQPAPETYNLFDDIILLSDG+I+YQGPRE VLEFFES GF+C
Sbjct: 363 NCLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRC 422
Query: 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFD 483
P+RKGVADFLQEVTSKKDQ+QYWA K+ PYRFV V+EF AFQSFH G+K+ DEL +P+D
Sbjct: 423 PERKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYD 482
Query: 484 KSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFR 543
K+KSH AALTTK YGV K+ELL A SRE LLMKRNSFVY+FKL Q+ + ++ MTLF R
Sbjct: 483 KTKSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLR 542
Query: 544 TKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIP 603
T+MHK+SV DG IY GALFFT+VM +F+G AE++M I KLPVFYKQRD F+P WAYA+P
Sbjct: 543 TEMHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALP 602
Query: 604 SWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663
+WILKIPI+F+E VWVF++YYVIG+DPN R F+QYLLLL NQM SGLFR + + GRN
Sbjct: 603 TWILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRN 662
Query: 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK 723
++V+ TFG+F +L+LLALGGF+LS ++VKKWW W YW SP+MYAQN I+ NEFLGHSWKK
Sbjct: 663 MIVSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKK 722
Query: 724 FTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAV 783
STESLGV VL +R FF AYWYW+G GALFGFILL N G+ L L FLN F+KP+AV
Sbjct: 723 NVTGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAV 782
Query: 784 ITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYS 843
I EE ++ E GG ++LS +RN+ A A+H KK+GMVLPF+PYS
Sbjct: 783 IVEESDNAE----TGGQIELS----------QRNTVREEAVAGANHNKKKGMVLPFQPYS 828
Query: 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903
+TFD++ YSVDMP++MK QGV EDKL LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLA
Sbjct: 829 ITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 888
Query: 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963
GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP +V
Sbjct: 889 GRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSDVK 948
Query: 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
SETR+MFIEEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPT
Sbjct: 949 SETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
Query: 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083
SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+E+YVGPLG
Sbjct: 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGR 1068
Query: 1084 HSCHLISYFE 1093
+SCHLI+YFE
Sbjct: 1069 YSCHLINYFE 1078
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1690 bits (4376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1102 (73%), Positives = 928/1102 (84%), Gaps = 18/1102 (1%)
Query: 6 EIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQ 65
EIY A+ + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL+KGLL SQ
Sbjct: 5 EIYRAAGSLRRNGSMWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRKGLLMGSQ 64
Query: 66 GEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLT 125
G A EVDV NLG QE+Q L+ +LV + E DNEKFLL+L+NRIERVGI +P +EVRFEHLT
Sbjct: 65 GAASEVDVDNLGYQEKQSLMERLVKIAEEDNEKFLLRLRNRIERVGITIPEIEVRFEHLT 124
Query: 126 IEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLG 185
I+AEAF+ S+ALPSF F ED L L ILPS ++ TIL DVSGI+KP R+TLLLG
Sbjct: 125 IDAEAFIGSRALPSFHNFMFNKIEDALTGLRILPSRRRKFTILHDVSGIIKPQRMTLLLG 184
Query: 186 PPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245
PPSSGKTTLLLAL+GKLDP+LKV+GRVTYNGH MDEFVP+RTAAYISQHD HIGEMTVRE
Sbjct: 185 PPSSGKTTLLLALSGKLDPTLKVTGRVTYNGHGMDEFVPQRTAAYISQHDTHIGEMTVRE 244
Query: 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKV 305
TLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY LK+
Sbjct: 245 TLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKI 304
Query: 306 LGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVNC
Sbjct: 305 LGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNC 364
Query: 366 FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK 425
KQ IHI +GTAVISLLQPAPETYNLFDDIILLSDG+I+YQGPRE VLEFFES GF+CP+
Sbjct: 365 LKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDGRIIYQGPREDVLEFFESTGFRCPE 424
Query: 426 RKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKS 485
RKGVADFLQEVTSKKDQ+QYWA K+ PYRFV V+EF AFQSFH G+K+ DEL +P+DK+
Sbjct: 425 RKGVADFLQEVTSKKDQQQYWARKEEPYRFVTVKEFAEAFQSFHTGRKVGDELASPYDKT 484
Query: 486 KSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTK 545
KSH AALTTK YGV K+ELL A SRE LLMKRNSFVY+FKL Q+ + ++ MTLF RT+
Sbjct: 485 KSHPAALTTKKYGVNKKELLDANMSREYLLMKRNSFVYVFKLTQLAIMAVITMTLFLRTE 544
Query: 546 MHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSW 605
MHK+SV DG IY GALFFT+VM +F+G AE++M I KLPVFYKQRD F+P WAYA+P+W
Sbjct: 545 MHKNSVDDGNIYTGALFFTVVMIMFNGMAELAMAIAKLPVFYKQRDLLFYPAWAYALPTW 604
Query: 606 ILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLV 665
ILKIPI+F+E VWVF++YYVIG+DPN R F+QYLLLL NQM SGLFR + + GRN++
Sbjct: 605 ILKIPITFIEVGVWVFMTYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRLIASAGRNMI 664
Query: 666 VAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT 725
V+ TFG+F +L+LLALGGF+LS ++VKKWW W YW SP+MYAQN I+ NEFLGHSWKK
Sbjct: 665 VSNTFGAFVLLMLLALGGFILSHDDVKKWWIWGYWCSPLMYAQNAIVVNEFLGHSWKKNV 724
Query: 726 PTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVIT 785
STESLGV VL +R FF AYWYW+G GALFGFILL N G+ L L FLN F+KP+AVI
Sbjct: 725 TGSTESLGVTVLNNRGFFTEAYWYWIGAGALFGFILLFNFGYTLCLNFLNPFDKPQAVIV 784
Query: 786 EEFESDEQDNRIGGTVQLSNCGESGND----------NRERNSSSSLTEAE----ASHPK 831
EE ++ E GG ++LS S + R +S+SS E A+H K
Sbjct: 785 EESDNAE----TGGQIELSQRNSSIDQAASTERGEEIGRSISSTSSAVREEAVAGANHNK 840
Query: 832 KRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVS 891
K+GMVLPF+PYS+TFD++ YSVDMP++MK QGV EDKL LL GVSGAFRPGVLTALMGVS
Sbjct: 841 KKGMVLPFQPYSITFDDIRYSVDMPEEMKSQGVVEDKLELLKGVSGAFRPGVLTALMGVS 900
Query: 892 GAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951
GAGKTTLMDVLAGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL
Sbjct: 901 GAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLL 960
Query: 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 1011
YSAWLRLP +V SETR+MFIEEVMELVEL PLR +LVGLPGV+GLSTEQRKRLTIAVELV
Sbjct: 961 YSAWLRLPSDVKSETRQMFIEEVMELVELTPLRDALVGLPGVSGLSTEQRKRLTIAVELV 1020
Query: 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KR
Sbjct: 1021 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1080
Query: 1072 GGREVYVGPLGHHSCHLISYFE 1093
GG+E+YVGPLG +SCHLI+YFE
Sbjct: 1081 GGQEIYVGPLGRYSCHLINYFE 1102
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1686 bits (4366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1101 (74%), Positives = 927/1101 (84%), Gaps = 20/1101 (1%)
Query: 3 ESHEIYLASTTSHRSHSR-WRTGSVGAFSMSSR--EEDDEEALKWAAIEKLPTYNRLKKG 59
E E+Y+A + R S WR+ ++ FS SSR E+DDEEALKWAAIE+LPTY+RLKKG
Sbjct: 2 EGTELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLKKG 61
Query: 60 LLTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV 119
LLTTS+GEA E+DV NLG E++ L+++LV V E DNE FLLKLKNRI+RVGI LP +EV
Sbjct: 62 LLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMIEV 121
Query: 120 RFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGR 179
RFEHL +E EA + S+ALP+F F I E LN+LHILPS KK L+IL+DVSGI+KP R
Sbjct: 122 RFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKPKR 181
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+TLLLGPPSSGKTTLLLALAGKLDP LK SGRVTYNGH M+EFVP+RTAAYISQHD HIG
Sbjct: 182 MTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTHIG 241
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
EMTVRETLAFAARCQGVG RYEM++EL RREKA+ IKPDPDIDVFMKA +TEG+EANV+T
Sbjct: 242 EMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANVVT 301
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CAD MVG+EM RGVSGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 302 DYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSSTT 361
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+QIVN KQ IHI +GTAVISLLQP PETYNLFDDIILLSDGQIVYQGPRE VLEFFE M
Sbjct: 362 YQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFEYM 421
Query: 420 GFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479
GFKCP+RKGVADFLQEVTS+KDQ QYWA KD+PY FV V+EF AFQSF VG++L EL
Sbjct: 422 GFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAELS 481
Query: 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMT 539
TPFDKSKSH AALTTK YGVGK ELLKAC SRE+LLMKRNSFVYIFKL Q+ + +V MT
Sbjct: 482 TPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVAMT 541
Query: 540 LFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWA 599
LF RT+MH+DSVT+GGIY GALFF++V +F+G +EIS+TI KLPVFYKQR F+PPWA
Sbjct: 542 LFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPPWA 601
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
+++P WI KIPI+ ++ A+WVFL+YYVIG+DPN GRFFKQYLLL +QM SGLFRF+ A
Sbjct: 602 FSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFIAA 661
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719
GRN++VA TFGSFA+L L ALGGF+LSR+ +KKWW W YW SP+MY QN I+ NEFLG+
Sbjct: 662 AGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFLGN 721
Query: 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEK 779
SW K P +TE+LG+QVLESR FF HAYWYW+G+GAL GF LL N F LALTFL +K
Sbjct: 722 SWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPLQK 781
Query: 780 PRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
P+AVI+E+ S+ + G +QLS S + E +H K++GMVLPF
Sbjct: 782 PQAVISEDSASN-TSGKTGEVIQLS-------------SVRTELIVEENHQKQKGMVLPF 827
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EP+S+TF+++ YSVDMPQ+MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 828 EPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAGKTTLM 887
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI GDIRISG+PKKQETFARISGYCEQNDIHSP VTVYESL YS+WLRLP
Sbjct: 888 DVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSSWLRLP 947
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
PEVNSETRKMFIEEVMELVEL PLRQ+LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 948 PEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1007
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVG
Sbjct: 1008 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVG 1067
Query: 1080 PLGHHSCHLISYFEV---CPD 1097
PLG HSC LI YFE PD
Sbjct: 1068 PLGRHSCQLIKYFEAIEGVPD 1088
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356550580|ref|XP_003543663.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1663 bits (4306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 798/1094 (72%), Positives = 922/1094 (84%), Gaps = 22/1094 (2%)
Query: 3 ESHEIYLASTTSHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLT 62
E +IY AS + RS + WR V FS SSREEDDEEALKWAA+EKLPTYNRL+KGLLT
Sbjct: 2 EGSDIYRASNSLRRSSTAWRNSGVEVFSRSSREEDDEEALKWAALEKLPTYNRLRKGLLT 61
Query: 63 TSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFE 122
S G A E+DVS+LG QER +L+ +LV V E DNE+FLLKLK RI+RVG+ +PT+EVR+E
Sbjct: 62 ASHGVANEIDVSDLGTQERHKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVRYE 121
Query: 123 HLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTL 182
HL IEAEAF+ S+ALPSF T I E N LHI S KKH+TILKDVSGI+KP R+TL
Sbjct: 122 HLNIEAEAFVGSRALPSFINSVTNIIEGFFNLLHITTSKKKHVTILKDVSGIIKPRRMTL 181
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLAL+GKLD +LKVSGRVTYNGH ++EFVP+RTAAYISQHD HIGEMT
Sbjct: 182 LLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEMT 241
Query: 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302
VRETLAF+ARCQGVG+RY+ML+ELSRREKAA IKPDPD+DV+MKA +TEG+E++++TDY
Sbjct: 242 VRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESSIVTDYT 301
Query: 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQI
Sbjct: 302 LKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQI 361
Query: 363 VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
VN +Q +HI +GTAVISLLQPAPETY+LFDDIIL+SDGQ+VY GPRE VL+FFESMGF+
Sbjct: 362 VNSLRQYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGFR 421
Query: 423 CPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPF 482
CP+RKGVADFLQEVTSKKDQ QYWA +D+PYRFVKV +F AFQSFH+G+KL +EL PF
Sbjct: 422 CPERKGVADFLQEVTSKKDQAQYWARRDQPYRFVKVTQFAEAFQSFHIGRKLGEELVVPF 481
Query: 483 DKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFF 542
DK+KSH AALTTK YG+ K+ELLKA SRE LLMKRNSFVYIFKL Q+ + L+ MTLF
Sbjct: 482 DKTKSHPAALTTKKYGINKKELLKANLSREYLLMKRNSFVYIFKLCQLSIMALMTMTLFL 541
Query: 543 RTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAI 602
RT++H++++ D G+Y+GALFFT++M +F+G AEISMTI KLPVFYKQRD F+P WAYAI
Sbjct: 542 RTELHRNNMDDAGLYSGALFFTLIMIMFNGMAEISMTIAKLPVFYKQRDLLFYPSWAYAI 601
Query: 603 PSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGR 662
PSWILKIP++ LE AVWVFL+YYVIG+DPN GRFFKQYL+LL QM S LFR + A+GR
Sbjct: 602 PSWILKIPVTLLEVAVWVFLTYYVIGFDPNVGRFFKQYLILLFIGQMASALFRAIAALGR 661
Query: 663 NLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWK 722
N++V+ TFG+FAVL L LGG+V+S+ ++K WW W YW SP+MY QN ++ NEFL +SW
Sbjct: 662 NMIVSNTFGAFAVLTFLTLGGYVMSKNDIKNWWIWGYWISPLMYGQNALMVNEFLSNSWH 721
Query: 723 KFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRA 782
++ +LGV+ LESR F + +YWYWLGLGA+ GF+LL NV F+ AL L F+KP+A
Sbjct: 722 N----TSRNLGVEYLESRGFPSSSYWYWLGLGAMAGFVLLFNVMFSAALEILGPFDKPQA 777
Query: 783 VITEEFESDEQDNRIGGT---VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF 839
ITEE +E GT V+L SG + + E+SH KK+GMVLPF
Sbjct: 778 TITEEESPNE------GTVAEVELPRIESSGRGD---------SVVESSHGKKKGMVLPF 822
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
EP+S+TFDEV+YSVDMPQ+MK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLM
Sbjct: 823 EPHSITFDEVIYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLM 882
Query: 900 DVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959
DVLAGRKTGGYI G I+ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP
Sbjct: 883 DVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLP 942
Query: 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
V+S+TRKMFIEEVMELVEL PLR SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 943 SGVDSKTRKMFIEEVMELVELNPLRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1002
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVG
Sbjct: 1003 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVG 1062
Query: 1080 PLGHHSCHLISYFE 1093
PLG HS HLI YFE
Sbjct: 1063 PLGRHSTHLIKYFE 1076
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 800/1087 (73%), Positives = 915/1087 (84%), Gaps = 26/1087 (2%)
Query: 10 ASTTSHRSHSR-WRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEA 68
AS + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL++GLL S+GEA
Sbjct: 230 ASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLMGSEGEA 289
Query: 69 FEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEA 128
E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGI +P +EVRFEHLTI+A
Sbjct: 290 SEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFEHLTIDA 349
Query: 129 EAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPS 188
EAF+ S+ALPSF F E +LN + ILPS K+ TIL DVSGI+KP RLTLLLGPPS
Sbjct: 350 EAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTLLLGPPS 409
Query: 189 SGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248
SGKTTLLLALAGKLDP+LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMTVRETLA
Sbjct: 410 SGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMTVRETLA 469
Query: 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308
F+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY LK+LGL
Sbjct: 470 FSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYTLKILGL 529
Query: 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368
DICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI+N KQ
Sbjct: 530 DICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIINSLKQ 589
Query: 369 NIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKG 428
IHI +GTAVISLLQPAPETYNLFDDIILLSD QIVYQGPRE VLEFFES+GFKCP+RKG
Sbjct: 590 TIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFKCPERKG 649
Query: 429 VADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSH 488
ADFLQEVTS+KDQ QYWA KD PY FV V+EF AFQSFH+G+K++DEL +PFD++KSH
Sbjct: 650 EADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPFDRAKSH 709
Query: 489 RAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548
AALTTK YGV K+ELL A SRE LLMKRNSFVYIFKL Q+ + ++ MTLF RT+M+K
Sbjct: 710 PAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFLRTEMNK 769
Query: 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILK 608
+S DG IY GALFFT+VM +F+G AE++MTI KLPVFYKQRDF F+P WAYA+P+W+LK
Sbjct: 770 NSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYALPTWVLK 829
Query: 609 IPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAY 668
IPI+F+E AVWVF++YYVIG+DPN R F+QYLLLL NQM SGLFRF+ A GRN++VA
Sbjct: 830 IPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGRNMIVAS 889
Query: 669 TFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS 728
TFG+FAVL+L+ALGGF+LS + VKKWW W YWSSP+MYAQN I+ NEFLG SW K S
Sbjct: 890 TFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNVTNS 949
Query: 729 TESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEF 788
TESLG+ VL+SR FF A+WYW+G GAL GFI + N + L L +LN FEKP+AVITEE
Sbjct: 950 TESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQAVITEE- 1008
Query: 789 ESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTE--AEASHPKKRGMVLPFEPYSLTF 846
+DN + ++ + E AE +H KK+GMVLPF+P+S+TF
Sbjct: 1009 ----------------------SDNAKTATTEHMVEAIAEGNHNKKKGMVLPFQPHSITF 1046
Query: 847 DEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906
D++ YSVDMP++MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 1047 DDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 1106
Query: 907 TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET 966
TGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL YSAWLRLP +VNSET
Sbjct: 1107 TGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDVNSET 1166
Query: 967 RKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
RKMFIEEVMELVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 1167 RKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1226
Query: 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSC 1086
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVGPLG HS
Sbjct: 1227 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLGRHSS 1286
Query: 1087 HLISYFE 1093
HLI+YFE
Sbjct: 1287 HLINYFE 1293
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482642|ref|XP_002285020.2| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1662 bits (4303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/1091 (73%), Positives = 917/1091 (84%), Gaps = 14/1091 (1%)
Query: 4 SHEIYLASTTSHRSHSR-WRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLT 62
+ + Y AS + R+ S WR+ FS SSR+EDDEEALKWAA+EKLPTYNRL++GLL
Sbjct: 3 TADTYRASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTYNRLRRGLLM 62
Query: 63 TSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFE 122
S+GEA E+D+ NLG QE++ L+ +LV V E DNEKFLLKLKNRI+RVGI +P +EVRFE
Sbjct: 63 GSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGIDVPEIEVRFE 122
Query: 123 HLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTL 182
HLTI+AEAF+ S+ALPSF F E +LN + ILPS K+ TIL DVSGI+KP RLTL
Sbjct: 123 HLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSGIIKPRRLTL 182
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242
LLGPPSSGKTTLLLALAGKLDP+LKV GRVTYNGH M+EFVP+RTAAYISQHD HIGEMT
Sbjct: 183 LLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQHDTHIGEMT 242
Query: 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302
VRETLAF+ARCQGVG RY+ML ELSRREKAA IKPDPD+DVFMKAA+TEG++ NV+TDY
Sbjct: 243 VRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQKENVVTDYT 302
Query: 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQI
Sbjct: 303 LKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQI 362
Query: 363 VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
+N KQ IHI +GTAVISLLQPAPETYNLFDDIILLSD QIVYQGPRE VLEFFES+GFK
Sbjct: 363 INSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVLEFFESIGFK 422
Query: 423 CPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPF 482
CP+RKG ADFLQEVTS+KDQ QYWA KD PY FV V+EF AFQSFH+G+K++DEL +PF
Sbjct: 423 CPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRKVADELASPF 482
Query: 483 DKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFF 542
D++KSH AALTTK YGV K+ELL A SRE LLMKRNSFVYIFKL Q+ + ++ MTLF
Sbjct: 483 DRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVVAVIAMTLFL 542
Query: 543 RTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAI 602
RT+M+K+S DG IY GALFFT+VM +F+G AE++MTI KLPVFYKQRDF F+P WAYA+
Sbjct: 543 RTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFLFYPAWAYAL 602
Query: 603 PSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGR 662
P+W+LKIPI+F+E AVWVF++YYVIG+DPN R F+QYLLLL NQM SGLFRF+ A GR
Sbjct: 603 PTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGLFRFIAAAGR 662
Query: 663 NLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWK 722
N++VA TFG+FAVL+L+ALGGF+LS + VKKWW W YWSSP+MYAQN I+ NEFLG SW
Sbjct: 663 NMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWS 722
Query: 723 KFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRA 782
K STESLG+ VL+SR FF A+WYW+G GAL GFI + N + L L +LN FEKP+A
Sbjct: 723 KNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNYLNPFEKPQA 782
Query: 783 VITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPY 842
VITE E DN + +G++ AE +H KK+GMVLPF+P+
Sbjct: 783 VITE-----ESDN--------AKTATTGDETHTWGEHMVEAIAEGNHNKKKGMVLPFQPH 829
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
S+TFD++ YSVDMP++MK QG ED+L LL GVSGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 830 SITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 889
Query: 903 AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
AGRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL YSAWLRLP +V
Sbjct: 890 AGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESLLYSAWLRLPSDV 949
Query: 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
NSETRKMFIEEVMELVEL PLR +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 950 NSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1009
Query: 1023 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+E+YVGPLG
Sbjct: 1010 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQEIYVGPLG 1069
Query: 1083 HHSCHLISYFE 1093
HS HLI+YFE
Sbjct: 1070 RHSSHLINYFE 1080
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1661 bits (4301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 796/1092 (72%), Positives = 924/1092 (84%), Gaps = 17/1092 (1%)
Query: 3 ESHEIYLASTT-SHRSHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL 61
E +IY AS + RS + WR V AFS SSREEDDEEALKWAA+EKLPTYNRL+KGLL
Sbjct: 2 EGSDIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKGLL 61
Query: 62 TTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRF 121
T S G A E+DVS+LG+QERQ+L+ +LV V E DNE+FLLKLK RI+RVG+ +PT+EVR+
Sbjct: 62 TASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEVRY 121
Query: 122 EHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLT 181
EHL IEAEAF+ S+ALPSF T + E N LH+ S KKH+TILKDVSGI+KP R+T
Sbjct: 122 EHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRRMT 181
Query: 182 LLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241
LLLGPPSSGKTTLLLAL+GKLD +LKVSGRVTYNGH ++EFVP+RTAAYISQHD HIGEM
Sbjct: 182 LLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIGEM 241
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TVRETLAF+ARCQGVG+RY+ML+ELSRREKAA IKPDPD+DV+MKA +TEG+E+N++TDY
Sbjct: 242 TVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVTDY 301
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGLDICADTMVGDEM RG+SGGQ+KRVTTGEM+VGPA ALFMDEISTGLDSSTTFQ
Sbjct: 302 TLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQ 361
Query: 362 IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV+ + +HI +GTAVISLLQPAPETY+LFDDIIL+SDGQ+VY GPRE VL+FFESMGF
Sbjct: 362 IVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESMGF 421
Query: 422 KCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTP 481
+CP+RKGVADFLQEVTSKKDQ QYW +D+PYRFV V +F AFQSFH+G KL +EL P
Sbjct: 422 RCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELTVP 481
Query: 482 FDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLF 541
FD++KSH AALTTK YG+ K+ELLKA SRE LLMKRNSFVY+FKL Q+ + LV MTLF
Sbjct: 482 FDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMTLF 541
Query: 542 FRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYA 601
RT+MH +++ D G+YAGA+FF ++ +F+G AEISMTI KLPVFYKQR+ F+P WAYA
Sbjct: 542 LRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWAYA 601
Query: 602 IPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIG 661
IPSWILKIP++ +E AVWVFL+YYVIG+DPN GRFFKQYL+LL +QM SGLFR + A+G
Sbjct: 602 IPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAALG 661
Query: 662 RNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW 721
RN++VA TFG+FA++ ++ALGGF+LS+ ++K WW W YW SP+MY QN ++ NEFL +SW
Sbjct: 662 RNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSNSW 721
Query: 722 KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781
+T +LGV+ LESR FF +YWYWLGLGAL GF+ L NV F LAL FL F+KP+
Sbjct: 722 HN----ATHNLGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDKPQ 777
Query: 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEP 841
A ITE+ S+E GT L++ G ++ R S E+SH KK+GMVLPFEP
Sbjct: 778 ATITEDESSNE------GT--LADIELPGIESSGRGDSL----VESSHGKKKGMVLPFEP 825
Query: 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV 901
+S+TFDEVVYSVDMPQ+MK QGV ED+LVLL GVSGAFRPGVLTALMGVSGAGKTTLMDV
Sbjct: 826 HSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDV 885
Query: 902 LAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
LAGRKTGGYI G I+ISGYPKKQETFARISGYCEQNDIHSP VTVYESL YSAWLRLP
Sbjct: 886 LAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPSS 945
Query: 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
V+S+TRKMFIEEVMELVEL P+R SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDE
Sbjct: 946 VDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1005
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG+E+YVGPL
Sbjct: 1006 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1065
Query: 1082 GHHSCHLISYFE 1093
G HS HLI YFE
Sbjct: 1066 GRHSSHLIKYFE 1077
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572795|ref|XP_002527330.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223533330|gb|EEF35082.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1659 bits (4295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/1093 (73%), Positives = 931/1093 (85%), Gaps = 7/1093 (0%)
Query: 3 ESHEIYLASTTSHR-SHSRWRTGSVGAFSMSSREEDDEEALKWAAIEKLPTYNRLKKG-L 60
E EIY AS++ R S WR+ S FS S RE+DDEEALKWAA+EKLPTY+RL+KG L
Sbjct: 2 EGSEIYRASSSLRRGSFVGWRSNS-DVFSRSGREDDDEEALKWAALEKLPTYDRLRKGIL 60
Query: 61 LTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVR 120
L+ SQG E+D+ NLGLQE++ LI +LV V E DNEKFLLKLKNRI+RVGI LPT+EVR
Sbjct: 61 LSASQGVFSEIDIDNLGLQEKKTLIERLVKVAEEDNEKFLLKLKNRIDRVGIELPTIEVR 120
Query: 121 FEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRL 180
+EHL IEAEA +ALPSF F +I E LLN+LHILPS + TILKDVSGI+KP R+
Sbjct: 121 YEHLNIEAEAVSGGRALPSFVNFSISIIEGLLNFLHILPSRTRPFTILKDVSGIIKPSRM 180
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240
TLLLGPPSSGKTTLLLALAGKLDP+LK SG VTYNG+ M+EF+P+RTAAYISQHD H+GE
Sbjct: 181 TLLLGPPSSGKTTLLLALAGKLDPNLKFSGNVTYNGYKMNEFIPQRTAAYISQHDEHMGE 240
Query: 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITD 300
+TV+ETLAF+ARCQGVG+++E+L ELSRRE AA IKPDPDIDVFMKAA+TEG+E NV+TD
Sbjct: 241 LTVKETLAFSARCQGVGSQHELLAELSRREIAANIKPDPDIDVFMKAAATEGQETNVVTD 300
Query: 301 YYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGL+ICADT+VG+ M RG+SGGQKKRVTTGEM+VGPA ALFMDEISTGLDSSTT+
Sbjct: 301 YVLKILGLEICADTLVGNAMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTY 360
Query: 361 QIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIVNC KQ HI +GTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRE VL+FFE MG
Sbjct: 361 QIVNCLKQTTHILNGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREQVLDFFEYMG 420
Query: 421 FKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480
F+CP+RKGVADFLQEVTS+KDQ+QYWA +D+PYRF+ V+EF A QS+ VG+++ DEL
Sbjct: 421 FRCPERKGVADFLQEVTSRKDQKQYWARRDQPYRFITVKEFSEALQSYEVGRRIGDELSI 480
Query: 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTL 540
PFDKSKSH AAL TK YGVGKRELLKAC SRE LLMKRNSF YIFKL Q+ + + +TL
Sbjct: 481 PFDKSKSHPAALATKKYGVGKRELLKACISREFLLMKRNSFFYIFKLSQLIIMATIAITL 540
Query: 541 FFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAY 600
F RT+M ++++TDGG+Y GALF+T+ + +F+G AE+SMTI KLPVFYKQRD F+P W+Y
Sbjct: 541 FLRTEMDRETLTDGGVYLGALFYTVTIIMFNGMAELSMTIAKLPVFYKQRDLLFYPAWSY 600
Query: 601 AIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAI 660
++P+W+LKIP++F+E VWV ++YY IG+DPN GRFFKQYLLLL NQM SGLFRF+ A
Sbjct: 601 SLPTWLLKIPVTFVEVGVWVCINYYAIGFDPNIGRFFKQYLLLLFVNQMASGLFRFIAAA 660
Query: 661 GRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720
GRN++VA TFGSFA+L L ALGGFVLSREE+KKWW WAYW SP+MY QN I+ NEFLG+S
Sbjct: 661 GRNMIVANTFGSFALLTLFALGGFVLSREEIKKWWIWAYWLSPLMYGQNAIVVNEFLGNS 720
Query: 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKP 780
W P STESLGVQ+L+SR F+ +AYWYW+GLGAL F+L+ N+ FALALTFL+ FEK
Sbjct: 721 WSHIPPNSTESLGVQLLKSRGFYPYAYWYWIGLGALICFLLVFNLLFALALTFLDPFEKR 780
Query: 781 RAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFE 840
+AVI+E+ +S+E ++ G ++QL N G S +SS +E +H KK+GMVLPFE
Sbjct: 781 QAVISEDSQSNEPADQTGASIQLRNYGSS----HISTTSSDGEISEVNHNKKKGMVLPFE 836
Query: 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
P S+TFD+V+YSVDMPQ+M+ QGV EDKLVLL GVSGAFRPGVLTALMG+SGAGKTTLMD
Sbjct: 837 PRSITFDDVIYSVDMPQEMRSQGVLEDKLVLLKGVSGAFRPGVLTALMGISGAGKTTLMD 896
Query: 901 VLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
VLAGRKTGGYI GDIRISGYPK QETFARISGYCEQNDIHSP VTV ESL YSAWLRLP
Sbjct: 897 VLAGRKTGGYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVRESLIYSAWLRLPS 956
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
EV+S+TRKMF+EEVMELVEL ++ +LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 957 EVDSDTRKMFVEEVMELVELDSIKNALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1016
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG E+YVGP
Sbjct: 1017 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1076
Query: 1081 LGHHSCHLISYFE 1093
LG SCHLI YFE
Sbjct: 1077 LGRQSCHLIKYFE 1089
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1106 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.948 | 0.721 | 0.580 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.947 | 0.720 | 0.578 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.963 | 0.725 | 0.569 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.699 | 0.543 | 0.613 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.695 | 0.533 | 0.528 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.954 | 0.743 | 0.539 | 1.59999999856e-315 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.943 | 0.719 | 0.527 | 1.6e-294 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.679 | 0.527 | 0.465 | 2.9e-293 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.820 | 0.641 | 0.463 | 3.4e-212 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.844 | 0.661 | 0.418 | 3.7e-190 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3239 (1145.2 bits), Expect = 0., P = 0.
Identities = 622/1072 (58%), Positives = 786/1072 (73%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL--TTSQGEAF--EVDVSNLGLQERQRL 84
F S R E+D+ L+WAA+E+LPTY+RL+KG+L T G+ +VDV+NL +E++ L
Sbjct: 46 FGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHL 105
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+ ++ E DNEKFL +L+ R +RVGI +P +EVR+E+L++E + AS+ALP+
Sbjct: 106 MEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVT 165
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
E +L H+LPS K+ + ILKD+SGI+KP R+TLLLGPP D
Sbjct: 166 LNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDD 225
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L++SGR+TY GH EFVP++T AYISQHD H GEMTVRE+L F+ RC GVGTRY++LT
Sbjct: 226 TLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLT 285
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
ELSRRE+ AGIKPDP+ID FMK+ + G+E +++TDY LK+LGLDICADT+VGD MRRG+
Sbjct: 286 ELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGI 345
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQ+KR+TTGEM+VGPA ALFMDEISTGLDSSTTFQI +Q +HI T VISLLQP
Sbjct: 346 SGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQP 405
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
APET+ LFDDIILLS+GQIVYQG R+ VLEFFE MGFKCP+RKG+ADFLQEVTSKKDQEQ
Sbjct: 406 APETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQ 465
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW ++ PY +V V +F + F SFH GQ+L+ E + P+DK+K+H AAL T+ YG+ ++L
Sbjct: 466 YWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDL 525
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
KAC RE LLMKRNSFVY+FK +QI ++L+ MT++FRT+MH +V DG + GALFF+
Sbjct: 526 FKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFS 585
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
++ +F+G AE++ T+++LPVF+KQRDF F+PPWA+A+P ++LKIP+S +E +W+ L+Y
Sbjct: 586 LINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTY 645
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IG+ P+A RFF+Q L NQM LFRFLGA+GR V+A +
Sbjct: 646 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGF 705
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW---KKFTPTSTESLGVQVLESRE 741
++++ W W Y++SP+MY Q ++ NEFL W T + +++G +L+SR
Sbjct: 706 IISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRG 765
Query: 742 FFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
FF YW+W N + +AL +LN +A E + +D G
Sbjct: 766 FFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVE---EGKDKHKG--- 819
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
S+ G G S LT +SH K+GMVLPF+P SL F+ V Y VDMP +MK
Sbjct: 820 --SHSGTGG-------SVVELTST-SSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMKA 869
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
QGV D+L LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+ G I ISGYP
Sbjct: 870 QGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYP 929
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
K Q TFAR+SGYCEQNDIHSP VTVYESL YSAWLRL +++++TR+MF+EEVMELVELK
Sbjct: 930 KNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELK 989
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 990 PLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1049
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
VDTGRTVVCTIHQPSIDIFE+FDEL LMKRGG+ +Y G LGHHS L+ YFE
Sbjct: 1050 VDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFE 1101
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3231 (1142.4 bits), Expect = 0., P = 0.
Identities = 620/1072 (57%), Positives = 788/1072 (73%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLL--TTSQG--EAFEVDVSNLGLQERQRL 84
F S R E+D+ L+WAAIE+LPT++RL+KG+L T++ G E ++D++ L ++++ L
Sbjct: 48 FGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHL 107
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+ +++ E DNEKFL L+ R +RVGI +P +EVR+E++++E + AS+ALP+
Sbjct: 108 MEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVT 167
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
E +L + H+LPS +K + ILKD+SGIVKP R+TLLLGPP D
Sbjct: 168 LNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDD 227
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L++SGR+TY GH EFVP++T AYISQHD H GEMTVRE L F+ RC GVG+RY++++
Sbjct: 228 TLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMS 287
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
ELSRREK GIKPDP ID FMK+ + G+E +++TDY LK+LGLDICAD + GD MRRG+
Sbjct: 288 ELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGI 347
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQKKR+TTGEM+VGPA ALFMDEISTGLDSSTTFQI +Q +HI+ T +ISLLQP
Sbjct: 348 SGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQP 407
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
APET+ LFDDIILLS+GQIVYQGPR+ VLEFFE GF+CP+RKGVADFLQEVTSKKDQEQ
Sbjct: 408 APETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQ 467
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW +++PY +V V +F + F +FH GQKL+ E + P+DK+K+H AAL T+ YG+ EL
Sbjct: 468 YWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWEL 527
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
KAC RE LLMKRNSFVY+FK +QI ++L+ MT++ RT+MH +V DG + GA+FF+
Sbjct: 528 FKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFS 587
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
++ +F+G AE++ T+++LPVFYKQRDF F+PPWA+A+P+W+LKIP+S +E +W+ L+Y
Sbjct: 588 LINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTY 647
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IG+ P+A RFF+Q L NQM LFRFLGAIGR V++ +
Sbjct: 648 YTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGF 707
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKK---FTPTSTESLGVQVLESRE 741
+++++ W WAY+ SP+MY Q I+ NEFL W T + +++G +L+SR
Sbjct: 708 IIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRG 767
Query: 742 FFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTV 801
FF YW+W N+ + LAL +LN +A + EE + D+Q
Sbjct: 768 FFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGK-DKQKGE----- 821
Query: 802 QLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861
N G G+ E NSSS+ PK RGMVLPF+P SL F+ V Y VDMP +MK
Sbjct: 822 ---NRGTEGSVV-ELNSSSN------KGPK-RGMVLPFQPLSLAFNNVNYYVDMPSEMKA 870
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
QGV D+L LL V GAFRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYI G I ISGYP
Sbjct: 871 QGVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYP 930
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
K Q TFAR+SGYCEQNDIHSP VTVYESL YSAWLRL +++ +TR++F+EEVMELVELK
Sbjct: 931 KNQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELK 990
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
PLR S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT
Sbjct: 991 PLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1050
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
VDTGRTVVCTIHQPSIDIFE+FDEL LMKRGG+ +Y G LGHHS L+ YFE
Sbjct: 1051 VDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFE 1102
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3171 (1121.3 bits), Expect = 0., P = 0.
Identities = 619/1086 (56%), Positives = 779/1086 (71%)
Query: 29 FSMSSRE----EDDEEALKWAAIEKLPTYNRLKKGLLTT--------SQGEAFEVDVSNL 76
FS SR DDEEALKWAAIEKLPTY+RL+ L+ +Q + EVDV+ L
Sbjct: 36 FSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDVTKL 95
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
++RQ+ I+ + V E DNE+ L KL+NRI+RVGI LPTVEVR+EHLTI+A+ + +++
Sbjct: 96 DGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTGNRS 155
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXX 196
LP+ + E L + I + K LTILKD+SG++KPGR+TLLLGPP
Sbjct: 156 LPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLL 215
Query: 197 XXXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
D SL+VSG +TYNG+ +DEFVP +T+AYISQ+D H+G MTV+ETL F+ARCQGV
Sbjct: 216 ALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARCQGV 275
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
GTRY++L EL+RREK AGI P+ D+D+FMKA++ +G + +++TDY LK+LGLDIC DT+V
Sbjct: 276 GTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKDTIV 335
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV C +Q +H+N T
Sbjct: 336 GDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLNEAT 395
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
++SLLQPAPET++LFDDIIL+S+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEV
Sbjct: 396 VLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFLQEV 455
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQEQYW + +RPY ++ V EF + ++SFHVG K+S+EL PFDKS+ H+AAL
Sbjct: 456 TSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALVFDK 515
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
Y V KRELLK+C +E LLM+RN+F Y+FK +QI I + TLF RT+M+ + D +
Sbjct: 516 YSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGDANL 575
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
Y GAL F +++ +F+GFAE++M + +LPVFYKQRD F+P W +++P+++L IP S LE
Sbjct: 576 YIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSILES 635
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXX 676
W+ ++YY IG+ P+A RFFKQ+LL+ QM + LFR + ++ R +++A T
Sbjct: 636 TAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGALTLL 695
Query: 677 XXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW--KKFTPTSTESLGV 734
+ ++ WW WAYW SP+ YA NG++ NE W K + ST LG
Sbjct: 696 LVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGT 755
Query: 735 QVLESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQD 794
VL + + + WYW N+ F LALT+LN K ++ EE D
Sbjct: 756 MVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQ 815
Query: 795 NRIGGTVQLSNCGESGNDNRE----RNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVV 850
+ LS GN E R S S EA K+GMVLPF P +++FD+V
Sbjct: 816 GKDPMRRSLSTA--DGNRRGEVAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFDDVK 873
Query: 851 YSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 910
Y VDMP +M+ QGV E +L LL GV+GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 874 YFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 933
Query: 911 ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF 970
I GD+RISG+PK QETFARISGYCEQ DIHSP VTV ESL +SA+LRLP EV + + MF
Sbjct: 934 IEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMF 993
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+++VMELVEL LR S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 994 VDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1053
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLIS 1090
AAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL LMKRGG+ +Y GPLG +S ++
Sbjct: 1054 AAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVE 1113
Query: 1091 YFEVCP 1096
YFE P
Sbjct: 1114 YFESFP 1119
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2555 (904.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 478/779 (61%), Positives = 589/779 (75%)
Query: 29 FSMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQ--GEAFEVDVSNLGLQERQRLIN 86
FS SSREEDDEEAL+WAA+EKLPT++RL+KG+LT S G E+D+ LG Q+ ++L+
Sbjct: 29 FSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLGFQDTKKLLE 88
Query: 87 KLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTT 146
+L+ V + ++EK L KLK RI+RVGI LPT+EVRF+HL +EAE + +ALP+F F +
Sbjct: 89 RLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRALPTFVNFISN 148
Query: 147 IFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSL 206
+ LN LH++P+ KK TIL DVSGIVKPGR+ LLLGPP D L
Sbjct: 149 FADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLALAGKLDQEL 208
Query: 207 KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266
K +GRVTYNGH M+EFVP+RTAAYI Q+D HIGEMTVRET A+AAR QGVG+RY+MLTEL
Sbjct: 209 KQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVGSRYDMLTEL 268
Query: 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326
+RREK A IKPDPDID+FMKA ST GE+ NV+TDY LK+LGL++CADTMVGD+M RG+SG
Sbjct: 269 ARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVGDDMLRGISG 328
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386
GQKKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN + +HI +GTA+ISLLQPAP
Sbjct: 329 GQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTALISLLQPAP 388
Query: 387 ETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYW 446
ET+NLFDDIIL+++G+I+Y+GPR+ V+EFFE+MGFKCP RKGVADFLQEVTSKKDQ QYW
Sbjct: 389 ETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVTSKKDQMQYW 448
Query: 447 AHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLK 506
A +D PYRF++V+EF AFQSFHVG+++ DEL PFDK+KSH AALTTK YGVG +EL+K
Sbjct: 449 ARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKYGVGIKELVK 508
Query: 507 ACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIV 566
SRE LLMKRNSFVY FK Q+ + + MTLFFRT+M K + DG +Y GALFF ++
Sbjct: 509 TSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLYTGALFFILM 568
Query: 567 MPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYV 626
M +F+G +E+SMTI KLPVFYKQRD F+P W Y++P W+LKIPISF+E A+ F++YYV
Sbjct: 569 MLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAALTTFITYYV 628
Query: 627 IGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXX 686
IG+DPN GR FKQY+LL+ NQM S LF+ + A+GRN++VA T
Sbjct: 629 IGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLVFFALGGVVL 688
Query: 687 XREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHA 746
R+++KKWW W YW SP+MY QN ILANEF GHSW + S+E+LGV L+SR F HA
Sbjct: 689 SRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFLKSRGFLPHA 748
Query: 747 YWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDE---QDNRIGGTVQ 802
YWYW N GF LALTFLN KP+AVI EE SDE Q R G V+
Sbjct: 749 YWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQSARSEGVVE 807
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2143 (759.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 414/783 (52%), Positives = 537/783 (68%)
Query: 29 FSMSSRE----EDDEEALKWAAIEKLPTYNRLKKGLLTT-SQGEAF-------EVDVSNL 76
F+ SSR +DEEALKWA+IEKLPTYNRL+ L+ + + + VDV+ L
Sbjct: 34 FNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDVTKL 93
Query: 77 GLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKA 136
+ERQ+ I+ + V E DNE+ L KL+NRI+RVGI LPTVEVR++HLT++A+ + ++
Sbjct: 94 DGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTGDRS 153
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXX 196
LPS + E L + I + K LTILKDVSGIVKP R+TLLLGPP
Sbjct: 154 LPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 213
Query: 197 XXXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
D SL VSG VTYNG+ ++EFVP +T+AYISQ+D H+G MTV+ETL F+ARCQGV
Sbjct: 214 ALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARCQGV 273
Query: 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316
GTRY++L EL+RREK AGI P+ D+D+FMKA++ +G ++++ITDY LK+LGLDIC DT+V
Sbjct: 274 GTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKDTIV 333
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
GD+M RG+SGGQKKRVTTGEM+VGP LFMDEISTGLDSSTTFQIV C +Q +H+ T
Sbjct: 334 GDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLTEAT 393
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+ISLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RKG ADFLQEV
Sbjct: 394 VLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFLQEV 453
Query: 437 TSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKV 496
TSKKDQEQYW +RPYR++ V EF ++F+ FHVG KLS+EL P+DKSKSH+AAL
Sbjct: 454 TSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALMFDK 513
Query: 497 YGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556
Y + K ELLK+C +E +LMKRNSF Y+FK +QI I + TL+ RT+MH + D I
Sbjct: 514 YSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEIDANI 573
Query: 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEP 616
Y G+L F +++ +F+G AE++MTI +LPVFYKQRD F PPW Y +P+++L IPIS E
Sbjct: 574 YVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISIFES 633
Query: 617 AVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXX 676
W+ ++YY IGY P+A RFFKQ+L++ QM +G+FRF+ + R + +A T
Sbjct: 634 TAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVLVLL 693
Query: 677 XXXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW-KKFTPTSTESLGVQ 735
R E+ WW+WAYW SP+ YA N I NE W K + ST LG
Sbjct: 694 VVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRLGTS 753
Query: 736 VLESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDN 795
VL + F WYW N F LALT+L+ K +A++ +E E +E
Sbjct: 754 VLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKE-EDEEAKG 812
Query: 796 RIG 798
+ G
Sbjct: 813 KAG 815
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3026 (1070.3 bits), Expect = 1.6e-315, P = 1.6e-315
Identities = 577/1070 (53%), Positives = 761/1070 (71%)
Query: 28 AFSMSS--REE-DDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNLGLQERQRL 84
AFS S+ ++E +DEE L+WAA+++LPTY+R+++G+ GE E+ + NL E++ L
Sbjct: 8 AFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLEASEQRLL 67
Query: 85 INKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFF 144
+++LV E D E+F +++ R + V + P +EVRF++L +E+ + S+ALP+ F
Sbjct: 68 LDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRALPTIPNFI 127
Query: 145 TTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDP 204
+ E LL +H++ + LTIL +SG+++P RLTLLLGPP
Sbjct: 128 INMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGT 187
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+L+ SG++TYNG+++ E + RT+AY+SQ D H+ EMTVR+TL FA RCQGVG +Y+ML
Sbjct: 188 NLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVGFKYDMLL 247
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324
EL+RREK AGI PD D+D+FMK+ + G E +++ +Y +K+LGLD CADT+VGDEM +G+
Sbjct: 248 ELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVGDEMIKGI 307
Query: 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
SGGQKKR+TTGE++VGPA LFMDEIS GLDSSTT QI+ + + H GT VISLLQP
Sbjct: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTTVISLLQP 367
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
+PETY LFDD+IL+S+GQI+YQGPR+ VL+FF S+GF CP RK VADFLQEVTSKKDQ+Q
Sbjct: 368 SPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVTSKKDQQQ 427
Query: 445 YWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKREL 504
YW+ RPYR+V +F AF+S+ G+KL+ +L+ PFDK +H AAL+T YGV K EL
Sbjct: 428 YWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQYGVKKSEL 487
Query: 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFT 564
LK + + LMK+N+F+Y+FK +Q+ + L+ MT+F RT MH +++ DG IY G+L+F+
Sbjct: 488 LKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFS 547
Query: 565 IVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSY 624
+V+ LF+GF E+ M + KLPV YK RD F+P WAY +PSW+L IP S +E A WV ++Y
Sbjct: 548 MVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESATWVAVTY 607
Query: 625 YVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXX 684
Y IGYDP RF +Q+LL + +QM GLFR +G++GR+++VA T
Sbjct: 608 YTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLVVMTLGGF 667
Query: 685 XXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTST-ESLGVQVLESREFF 743
R+ + WW W YW SP+MYAQN NEFLGH+W+K T +SLG+ +L+ R F
Sbjct: 668 IISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLALLKERSLF 727
Query: 744 AHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQL 803
+ YWYW N+ F L L LN + K +AV++ E E DE++ + G
Sbjct: 728 SGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKKRKGD--- 783
Query: 804 SNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQG 863
E + RE S + K RGMVLPF+P SL+F + Y VD+P +K QG
Sbjct: 784 ----EFVVELREYLQHSG--SIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQG 837
Query: 864 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923
+ ED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I GD+ ISG+PK+
Sbjct: 838 ILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKR 897
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
QETFARISGYCEQND+HSP +TV ESL +SA LRLP +++SET++ F+ EVMELVEL L
Sbjct: 898 QETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSL 957
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+LVGLPGV+GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 958 SGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1017
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
TGRT+VCTIHQPSIDIFE+FDEL MKRGG +Y GPLG SC LI YFE
Sbjct: 1018 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2828 (1000.6 bits), Expect = 1.6e-294, P = 1.6e-294
Identities = 566/1072 (52%), Positives = 729/1072 (68%)
Query: 35 EEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE-----VDVSNLGLQERQRLINKLV 89
+ D E AL+WA IE+LPT R++ LL E VDV+ LG ER +I KL+
Sbjct: 52 DHDAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLI 111
Query: 90 TVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEA-FLASKALPSFTKFFTTIF 148
E DN K L K++ RI+RVG+ LPT+EVR+E L + AE + KALP+ +
Sbjct: 112 KHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVL 171
Query: 149 EDLLNYLHILPSTKKH---LTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPS 205
+L+ L K H + I+ DV+GI+KPGRLTLLLGPP + +
Sbjct: 172 SELVK----LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENN 227
Query: 206 LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTE 265
LK SG ++YNGH +DEFVP++T+AYISQ+D HI EMTVRET+ F+ARCQGVG+R +++ E
Sbjct: 228 LKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMME 287
Query: 266 LSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325
+S+REK GI PD ++D +MKA S EG + ++ TDY LK+LGLDICA+ ++GD MRRG+S
Sbjct: 288 VSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGIS 347
Query: 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPA 385
GGQKKR+TT EM+VGP ALFMDEI+ GLDSST FQIV +Q HI+S T ++SLLQPA
Sbjct: 348 GGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPA 407
Query: 386 PETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQY 445
PE+Y+LFDDI+L++ G+IVY GPR VL FFE GF+CP+RKGVADFLQEV SKKDQ QY
Sbjct: 408 PESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQY 467
Query: 446 WAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELL 505
W H+D PY FV V+ F+ +G+K+ D L P+D+SKSH+ AL+ VY + EL
Sbjct: 468 WWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELF 527
Query: 506 KACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTI 565
AC SRE LLMKRN FVYIFK Q+ + MT+F RT+M D + G Y ALFF +
Sbjct: 528 IACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGID-IIHGNSYMSALFFAL 586
Query: 566 VMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYY 625
++ L GF E+SMT +L VFYKQ+ F+P WAYAIP+ +LK+P+SF E VW LSYY
Sbjct: 587 IILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYY 646
Query: 626 VIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXX 685
VIGY P A RFFKQ++LL A + +FR L AI + +V + T
Sbjct: 647 VIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFV 706
Query: 686 XXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAH 745
+ W KW +W++P+ Y + G+ NEFL W + P + +LG +L++R +
Sbjct: 707 IPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPNNF-TLGRTILQTRGMDYN 765
Query: 746 AYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSN 805
Y YW N+ F LALTFL RA+I+++ S+ Q GT + +
Sbjct: 766 GYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQ-----GTEKST- 819
Query: 806 CGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVP 865
E + ++ S TE E MVLPF+P ++TF ++ Y VDMP +M+ QG
Sbjct: 820 --EDSSVRKKTTDSPVKTEEEDK------MVLPFKPLTVTFQDLNYFVDMPVEMRDQGYD 871
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+ KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+DVLAGRKT GYI GDIRISG+PK QE
Sbjct: 872 QKKLQLLSDITGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQE 931
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
TFAR+SGYCEQ DIHSP +TV ES+ YSAWLRL PE+++ T+ F+++V+E +EL ++
Sbjct: 932 TFARVSGYCEQTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKD 991
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
SLVG+ GV+GLSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTG
Sbjct: 992 SLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTG 1051
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPD 1097
RT+VCTIHQPSIDIFEAFDEL L+KRGGR +Y GPLG HS H+I YFE P+
Sbjct: 1052 RTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPE 1103
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1824 (647.1 bits), Expect = 2.9e-293, Sum P(2) = 2.9e-293
Identities = 356/765 (46%), Positives = 486/765 (63%)
Query: 36 EDDEEALKWAAIEKLP-----TYNRLKKGLLTTSQGEAFE-------VDVSNLGLQERQR 83
E DEE L+WAAI +LP T+N + + T +Q + +DV L +R+
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDVKKLDRADREM 91
Query: 84 LINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKF 143
L+ + + ++ DN K L +K R++RVG+ +P +EVRFE+L IEA+ ++ALP+
Sbjct: 92 LVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVNV 151
Query: 144 FTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXD 203
FE L+ L I+ K L ILKD+SGI+KPGR+TLLLGPP D
Sbjct: 152 SRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKLD 211
Query: 204 PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYE-M 262
SLK +G +TYNG N+++F +RT+AYISQ DNHI E+TVRETL FAARCQG +
Sbjct: 212 KSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAGY 271
Query: 263 LTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322
+ +L+R EK GI+P +ID FMKAAS +GE+ +V TDY LKVLGLD+C+DTMVG++M R
Sbjct: 272 MKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMMR 331
Query: 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
GVSGGQ+KRVTTGEM VGP LFMDEISTGLDSSTTFQIV C + +H+ T +++LL
Sbjct: 332 GVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMALL 391
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
QPAPET++LFDD+ILLS+G +VYQGPRE V+ FFES+GF+ P RKGVADFLQEVTSKKDQ
Sbjct: 392 QPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKDQ 451
Query: 443 EQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKR 502
QYWA +PY+F+ V + AAF++ G +L PFDK + +AL + +
Sbjct: 452 AQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISGW 511
Query: 503 ELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALF 562
E LK C RELLL+KR+ F+Y F+ Q+G + LV T+F +T++H S G Y LF
Sbjct: 512 ENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCLF 571
Query: 563 FTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFL 622
F +V +F+GF+E+ + I +LPVFYKQRD F P W+++I SW+L++P S LE VW +
Sbjct: 572 FGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSGV 631
Query: 623 SYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXX 682
Y+ +G P+AGRFF+ LLL + +QM GLFR + ++ R++V+A T
Sbjct: 632 VYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLLG 691
Query: 683 XXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREF 742
+ ++K WW W +W SP+ Y Q I NEF W + S ++G+ +L+ R F
Sbjct: 692 GFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTIGLNLLKLRSF 751
Query: 743 FAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEE 787
+ YWYW N LAL +LN K RAV+ ++
Sbjct: 752 PTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDD 796
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2051 (727.0 bits), Expect = 3.4e-212, P = 3.4e-212
Identities = 437/942 (46%), Positives = 595/942 (63%)
Query: 30 SMSSREEDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNLGLQERQRLINKLV 89
S S+ ++ DEEALKWAA+EKLPT+ RL+ ++ + VDV+ LG+ +RQ+ I+ +
Sbjct: 28 SGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPHEDL---VDVTKLGVDDRQKFIDSIF 84
Query: 90 TVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFE 149
VTE DNEKFL K +NRI+RV I LPTVEVRFE +TIEA + +ALP+ I E
Sbjct: 85 KVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALPTLPNAALNIAE 144
Query: 150 DLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXXXXXXXDPSLKVS 209
L L + +TIL+DVSGI+KP R+TLLLGPP D SLKV+
Sbjct: 145 RGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDQSLKVT 204
Query: 210 GRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
GRVTYNGH ++EFVP++T+AYISQ+D H+G MTV+ETL F+ARCQGVGTRY++L+EL RR
Sbjct: 205 GRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGTRYDLLSELVRR 264
Query: 270 EKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329
EK AGI P+P++D+FMK+ + ++++ITDY L++LGLDIC DT+VGDEM RG+SGGQK
Sbjct: 265 EKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGDEMIRGISGGQK 324
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV C ++ + T ++SLLQPAPET+
Sbjct: 325 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVLMSLLQPAPETF 384
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHK 449
LFDDIILLS+GQIVYQGPR+ VL FFE+ GFKCP RKG ADFLQEVTS+KDQEQYWA
Sbjct: 385 ELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTSRKDQEQYWADS 444
Query: 450 DRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACT 509
+PY ++ V EF F++FHVG L +L P+D+ KSH A+L K + V K +L K C
Sbjct: 445 KKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHSVPKSQLFKVCW 504
Query: 510 SRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPL 569
RELLLMKRN+F YI K +QI + L+ T++ RT+M + +DG +Y GAL F++++ +
Sbjct: 505 DRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYIGALMFSMIVNM 564
Query: 570 FSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGY 629
F+GFAE+++ I +LPVFYKQRD F PPW +++P+++L IPIS E VWV ++YY+IG+
Sbjct: 565 FNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVVWVTITYYMIGF 624
Query: 630 DPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXXXXXXXXXXXXRE 689
P RF K L++ QM G+FRF+ A R++++A T R
Sbjct: 625 APELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLLFLLGGFIVPRG 684
Query: 690 EVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS--TESLGVQVLESREFFAHAY 747
E+ KWWKWAYW SP+ Y + + NE L W P+S + SLG+ VLE + F
Sbjct: 685 EIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWIN-QPSSDNSTSLGLAVLEIFDIFTDPN 743
Query: 748 WYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCG 807
WYW N+ LALTFLN EK +AV+++E + ++NR N
Sbjct: 744 WYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKE---NTEENRA------ENGS 794
Query: 808 ESGNDNRERNSSSSLTEAEASHPKKRGMV-LPFEPYSLTFDEVVYSVDMPQQMK-LQGV- 864
+S + + +R T S V +P E E S D Q +K + GV
Sbjct: 795 KSKSIDVKRGMVLPFTPLTMSFDNVNYYVDMPKE-----MKEQGVSKDKLQLLKEVTGVF 849
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD---IRISGYP 921
L L GVSGA + T LM V AG+ T + + G+ RISGY
Sbjct: 850 RPGVLTALMGVSGAGK----TTLMDVL-AGRKTGGYIEGDIRISGFPKRQETFARISGYC 904
Query: 922 KKQETFA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
++ + + +++ +++ I+S F+ + + + +R EV
Sbjct: 905 EQNDIHSPQVT--VKESLIYSAFLRLPKEVTKYEKMRFVDEV 944
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1843 (653.8 bits), Expect = 3.7e-190, P = 3.7e-190
Identities = 415/991 (41%), Positives = 580/991 (58%)
Query: 30 SMSSREEDD------EEALKWAAIEKLPTYNRLKKGLLTTSQGEAFE-----VDVSNLGL 78
S SSR E + E AL+WA I++LPT+ RL+ L+ GE E VDV+ LG
Sbjct: 7 SSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGA 65
Query: 79 QERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEA-FLASKAL 137
ER +I KL+ E DN K L K++ R+ERVG+ P++EVR+EHL +EA + KAL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 138 PSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPXXXXXXXXXX 197
P+ +F DLL L + + + ++ IL DVSGI+ PGRLTLLLGPP
Sbjct: 126 PTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 198 XXXXXDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVG 257
+ +LK G ++YNGH ++E VP++T+AYISQHD HI EMT RET+ F+ARCQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 258 TRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317
+R +++ E+S+REK GI PDP+ID +MKA S +G + ++ TDY LK+LGLDICA+T+VG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA 377
+ M+RG+SGGQKKR+TT EM+VGP ALFMDEI+ GLDSST FQI+ +Q HI + T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 378 VISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437
+SLLQPAPE+Y+LFDDI+L+++G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 438 SKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVY 497
SKKDQ QYW H++ P+ FV V F+ +G+K+ + L P+D SK+H+ AL+ VY
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 498 GVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557
+ K EL +AC SRE LLMKRN FVY+FK Q+ ++ MT+F RT+M D + G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDID-IIHGNSY 543
Query: 558 AGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPA 617
LFF V+ L G E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 618 VWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTXXXXXXXX 677
VW L+YYVIGY P RFF+Q+++L A + +FR + AI + V A T
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 678 XXXXXXXXXXREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVL 737
++ W KW +W +P+ YA+ G+ NEFL W+K PT+ +LG +L
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQPTNV-TLGRTIL 722
Query: 738 ESREFFAHAYWYWXXXXXXXXXXXXXNVGFALALTFLNQFEKPRAVITEEFESDEQDNRI 797
ESR Y YW N F LAL+FL R +I+++ S+ Q
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQ---- 778
Query: 798 GGTVQLSNCGESGNDNRERNSSSSLTEAEASH--PKKRGMVLPFEPYSLTFDEVVYSVDM 855
GT S N+ +SS E P K + + F+ + D V
Sbjct: 779 -GTKD-----SSVKKNKPLDSSIKTNEDPGKMILPFKP-LTITFQDLNYYVDVPVEMKGQ 831
Query: 856 P-QQMKLQGVPE-------DKLVLLNGVSGAFRPGVLTALMG--VSG--AGKTTLMDVLA 903
+ KLQ + E L L G+SGA + +L L G SG G+ + L
Sbjct: 832 GYNEKKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLK 891
Query: 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963
++T R+SGY ++ + + S E++ I+S ++ + + P+
Sbjct: 892 VQETFA------RVSGYCEQTDIHSP-SITVEESLIYSAWLRLVPEI--------NPQTK 936
Query: 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
K +E + EL E+K + G+ G++
Sbjct: 937 IRFVKQVLETI-ELEEIKDALVGVAGVSGLS 966
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6846 | 0.9674 | 0.7519 | yes | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.7194 | 0.9620 | 0.7419 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.7040 | 0.9665 | 0.7444 | N/A | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6962 | 0.9719 | 0.7444 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1106 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-99 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-73 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-70 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-61 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 5e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 1e-47 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-44 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-41 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 5e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-33 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 4e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-28 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-24 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-23 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-20 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 5e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-20 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-19 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-19 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-19 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-18 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-18 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-17 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-16 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-15 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 2e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-15 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-14 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-14 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 5e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-13 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-13 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-13 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-13 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 6e-13 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 7e-13 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 9e-13 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 9e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-12 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-12 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-12 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-12 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-12 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-12 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-11 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-11 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-11 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-11 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-11 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-11 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-11 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 5e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 6e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 8e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 9e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 9e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 1e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-10 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 9e-10 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-09 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-09 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-09 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-09 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-09 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-09 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-09 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-09 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-09 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-08 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-08 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-08 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-08 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-08 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-08 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 5e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 6e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 9e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 9e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 9e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-07 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-07 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-07 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 2e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-07 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-07 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 6e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 6e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 7e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-07 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 9e-07 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 9e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-06 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-06 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-06 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-06 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-06 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 2e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-06 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 2e-06 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-06 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-06 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-06 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-06 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-06 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 7e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 7e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 8e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 9e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 9e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 1e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 2e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-05 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-05 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 4e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 4e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-05 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-05 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-05 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-05 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 8e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 8e-05 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 8e-05 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 8e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 9e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 9e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 9e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 9e-05 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-04 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-04 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 2e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-04 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-04 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 3e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-04 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-04 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-04 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 5e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 6e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 6e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 6e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 7e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 7e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 7e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 8e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 9e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 9e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 9e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.001 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 0.001 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.001 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 0.002 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 0.002 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.002 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 0.002 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 0.002 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| pfam12730 | 230 | pfam12730, ABC2_membrane_4, ABC-2 family transport | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.003 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.003 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.003 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 0.003 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.003 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.004 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1579 bits (4089), Expect = 0.0
Identities = 674/1115 (60%), Positives = 832/1115 (74%), Gaps = 32/1115 (2%)
Query: 11 STTSHRSHSRWRTGSVGAFSMSSRE-------EDDEEALKWAAIEKLPTYNRLKKGLLTT 63
+ RS SR FS S+ ++DEEALKWAAIEKLPTY+RL+ ++ +
Sbjct: 9 RRSISRSVSRSSRNMEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKS 68
Query: 64 --------SQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLP 115
+Q EVDV+ L +RQ+ I+ + V E DNEKFL K +NRI+RVGI LP
Sbjct: 69 FVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLP 128
Query: 116 TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIV 175
TVEVRFEHLT+EA+ ++ S+ALP+ I E L L I + K LTILKD SGI+
Sbjct: 129 TVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGII 188
Query: 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD 235
KP R+TLLLGPPSSGKTTLLLALAGKLDPSLKVSG +TYNG+ ++EFVP +T+AYISQ+D
Sbjct: 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQND 248
Query: 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEA 295
H+G MTV+ETL F+ARCQGVGTRY++L+EL+RREK AGI P+ ++D+FMKA + EG ++
Sbjct: 249 VHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKS 308
Query: 296 NVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLD 355
++ITDY LK+LGLDIC DT+VGDEM RG+SGGQKKRVTTGEM+VGP LFMDEISTGLD
Sbjct: 309 SLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLD 368
Query: 356 SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEF 415
SSTT+QIV C +Q +H+ T ++SLLQPAPET++LFDDIILLS+GQIVYQGPR+ +LEF
Sbjct: 369 SSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEF 428
Query: 416 FESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLS 475
FES GFKCP+RKG ADFLQEVTSKKDQEQYWA +++PYR++ V EF F+SFHVG +L
Sbjct: 429 FESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLE 488
Query: 476 DELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITL 535
+EL PFDKS+SH+AAL Y V K ELLKAC +E LLMKRN+FVY+FK +QI +
Sbjct: 489 NELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAA 548
Query: 536 VYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFF 595
+ T+F RT+MH + DG +Y GAL F++++ +F+GFAE+++ I +LPVFYKQRD F
Sbjct: 549 IASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFH 608
Query: 596 PPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFR 655
PPW + +P+++L IPIS +E VWV ++YY IG+ P A RFFKQ LL+ QM +G+FR
Sbjct: 609 PPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFR 668
Query: 656 FLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANE 715
+ ++ R +++A T G+ +L++ LGGF+L + E+ WW+WAYW SP+ Y N + NE
Sbjct: 669 LIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNE 728
Query: 716 FLGHSW-KKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFL 774
W K ++ LG VL + F WYW+G+GAL GF +L NV F LALT+L
Sbjct: 729 MFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYL 788
Query: 775 NQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRE-------------RNSSSS 821
N K +A+I+EE + + LS+ GN+ RE +N SS
Sbjct: 789 NPLGKKQAIISEETAEEMEGEEDSIPRSLSSAD--GNNTREVAIQRMSNPEGLSKNRDSS 846
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP 881
L A P KRGMVLPF P +++FD+V Y VDMP +MK QGV ED+L LL V+GAFRP
Sbjct: 847 LEAANGVAP-KRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRP 905
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS 941
GVLTALMGVSGAGKTTLMDVLAGRKTGGYI GDIRISG+PKKQETFARISGYCEQNDIHS
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001
P VTV ESL YSA+LRLP EV+ E + MF++EVMELVEL L+ ++VGLPGV GLSTEQR
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1061
KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE
Sbjct: 1026 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1085
Query: 1062 AFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCP 1096
AFDEL LMKRGG+ +Y GPLG +S +I YFE P
Sbjct: 1086 AFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIP 1120
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 918 bits (2374), Expect = 0.0
Identities = 321/1066 (30%), Positives = 505/1066 (47%), Gaps = 119/1066 (11%)
Query: 93 EVDNEKFLLKLKNRIERVGIVLP--TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFED 150
E + + ++ + I+ I + V +++L+ A S P+F I
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 151 LLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK-VS 209
L K ILK + G++KPG LT++LG P SG +TLL +A D V
Sbjct: 61 GFRKL-KKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 210 GRVTYNGHNMDEFVPERTA--AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
G +TY+G +E Y ++ D H +TV ETL FAARC+ R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
+ I D Y+ GL +T VG++ RGVSGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387
++KRV+ E +G A D + GLDS+T + + K + +I T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 388 TYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWA 447
Y LFD +I+L +G +Y GP + ++FE MGFKCP R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 448 -HKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK---------------SKSHRAA 491
++ + R QEF +++ +L E+ D+ +K +
Sbjct: 333 GYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRT 390
Query: 492 LTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSV 551
+ Y V +K C +R L MK N +F + + L+ ++F+ +
Sbjct: 391 RPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NT 447
Query: 552 TDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPI 611
+D GALFF I+ FS EI+ P+ K R + + P A AI S I +IP
Sbjct: 448 SDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPF 507
Query: 612 SFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFG 671
+E V+ + Y+++ + AGRFF L+L +S LFR +GA+ + L A T
Sbjct: 508 KIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPA 567
Query: 672 SFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW--KKFTPTS- 728
+ +L L GF + R + W KW Y+ +P+ YA ++ NEF G + ++ P+
Sbjct: 568 AILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGG 627
Query: 729 -TESLGVQ--------------VLESREFFAHAY-----WYWLGLGALFGFILLLNVGFA 768
++LGV ++ ++ ++ W G + GF + +
Sbjct: 628 GYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYI 687
Query: 769 LALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEAS 828
L F ++ ++ G+ R + + T A
Sbjct: 688 LLTEFNKGAKQKGEILVF---------------------RRGSLKRAKKAGE--TSASNK 724
Query: 829 HPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL-----------QGVPEDKLVLLNGVSG 877
+ + G VL + D+V DM ++ + ++K V+LN V G
Sbjct: 725 NDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDG 784
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQN 937
+PG LTALMG SGAGKTTL++VLA R T G ITG R+ +F R GY +Q
Sbjct: 785 WVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQ 844
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
D+H P TV ESL +SA+LR P V+ + ++EEV++L+E++ ++VG+PG GL+
Sbjct: 845 DLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLN 903
Query: 998 TEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056
EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS
Sbjct: 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPS 963
Query: 1057 IDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEV-----CPD 1097
+FE FD L L+++GG+ VY G LG +S +I+YFE CP+
Sbjct: 964 AILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPE 1009
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 311 bits (800), Expect = 2e-99
Identities = 113/239 (47%), Positives = 142/239 (59%), Gaps = 47/239 (19%)
Query: 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKGG---------KRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 901 VLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
VLAGRKT G ITG+I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD L L+KRGG+ VY G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 3e-73
Identities = 96/237 (40%), Positives = 139/237 (58%), Gaps = 45/237 (18%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+L+F + +V + LL VSG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 903 AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962
AGR+TG ++G++ I+G P + +F +I GY Q+DI P +TV E+L ++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1023 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
TSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+L L+ + GR +Y G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 5e-70
Identities = 159/644 (24%), Positives = 273/644 (42%), Gaps = 70/644 (10%)
Query: 146 TIFEDLLNYLHILPSTKKH-LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204
++ L++ L ++ +LK+VSG+ KPG L ++G +GKTTL+ ALA +
Sbjct: 18 GSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77
Query: 205 SLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
+K SG V NG +D +AY+ Q D I +TVRE L F A M
Sbjct: 78 GVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQA-------HLRMPR 130
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR-RG 323
++++EK + V+ LGL CA+T +G R +G
Sbjct: 131 RVTKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKG 166
Query: 324 VSGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
+SGG++KR+ E++ P L LF DE ++GLDS + +V K + T + ++
Sbjct: 167 LSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIH 224
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
QP+ E + LFD IIL+++G++ Y G + + FF +G CP+ ADF +V +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLA---V 281
Query: 443 EQYWAHKDRPYRFVKVQEF----------VAAFQSFHVGQKLSDELQTPFDKSKSHRAAL 492
++ R F V L + + + + A+
Sbjct: 282 IPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM--EGIGYNASW 339
Query: 493 TTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVT 552
T+ Y + KR L LL + +LIQ ++ ++ + + V
Sbjct: 340 WTQFYALLKRSWLSVLRDPLLLKV---------RLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 553 DGGIYAGALFFTIVMPLFSG-FAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPI 611
+ GALF + F F I++ +LPVF ++ + AY + I ++P+
Sbjct: 391 NIN---GALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFG 671
+ PA++ ++Y++IG A F L+ + + + + +A T G
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 672 SFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTE- 730
V+ L GGF ++ + + ++KW + S Y G+L N++ + T +T
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 731 ---SLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALAL 771
S G +LE+ F +L L L I + AL
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 2e-61
Identities = 93/232 (40%), Positives = 140/232 (60%), Gaps = 5/232 (2%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYPKKQETFAR 929
LL VSG +PG L A+MG SGAGKTTLM+ LA R G +G + ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
IS Y +Q+D+ P +TV E L + A LR+P V + ++ ++EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 990 LPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEV-CPDAH 1099
+CTIHQPS ++FE FD++ LM GR Y+G + S CP+ +
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGHPCPENY 269
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 190 bits (485), Expect = 5e-55
Identities = 82/211 (38%), Positives = 125/211 (59%), Gaps = 8/211 (3%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFAR 929
+LN VS G + A++G SG+GKTTL+D ++GR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE-EVMELVELKPLRQSLV 988
Y Q+DI P +TV E+L Y+A LRLP + + RK +E ++ + L + +LV
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV 141
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V
Sbjct: 142 K-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIV 196
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ TIHQP D+F FD + L+ G VY G
Sbjct: 197 ILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 1e-47
Identities = 64/216 (29%), Positives = 107/216 (49%), Gaps = 8/216 (3%)
Query: 503 ELLKACTSRELLLMKRNSFV-YIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGAL 561
LKA RE L R+ + +++LIQ + LV+ T+F D+ G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL----DTSLGGLNRPGLL 56
Query: 562 FFTIVMPLFSGFAEISMTIVK-LPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWV 620
FF+I+ FS IS ++ V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLA 680
+ Y+++G + RFF L+LL SGL F+ A+ + A G +L LL
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 681 LGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716
L GF + + + W +W Y+ +P+ YA + ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 5e-44
Identities = 65/217 (29%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--KKQ 924
L+GVS PG + L+G +GAGKTTL+ +LAG +G+I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R GY Q P +TV E+L + A L + +E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R
Sbjct: 131 NKKVR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
G + + E D + ++ G+ + G
Sbjct: 186 GGVTILLSTHILEEAEELCDRVIILND-GKIIAEGTP 221
|
Length = 293 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 6e-41
Identities = 140/589 (23%), Positives = 232/589 (39%), Gaps = 105/589 (17%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
K+ IL +V G VKPG LT L+G +GKTTLL LA ++ + G NG +D
Sbjct: 773 KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
F +R+ Y+ Q D H+ TVRE+L F+A R+ K+
Sbjct: 833 SF--QRSIGYVQQQDLHLPTSTVRESLRFSAYL--------------RQPKSVSKS---- 872
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG-EMMV 339
E + +K+L ++ AD +VG G++ Q+KR+T G E++
Sbjct: 873 -------------EKMEYVEEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGVELVA 918
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-SLLQPAPETYNLFDDIILL 398
P L LF+DE ++GLDS T + I + + + G A++ ++ QP+ + FD ++LL
Sbjct: 919 KPKLLLFLDEPTSGLDSQTAWSIC-KLMRKL-ADHGQAILCTIHQPSAILFEEFDRLLLL 976
Query: 399 SDG-QIVYQGP----RELVLEFFESMGF-KCPKRKGVADFLQEV-----TSKKDQEQYWA 447
G Q VY G ++ +FE G KCP+ A+++ EV + +Q+ Y
Sbjct: 977 QKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQD-YHE 1035
Query: 448 HKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKA 507
+ V+ + D L+ K++ Y K
Sbjct: 1036 VWRNSSEYQAVKNEL-------------DRLEAELSKAEDDNDPDALSKYAASLWYQFKL 1082
Query: 508 CTSRELL--------LMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAG 559
R L + IF + IG FF+ + + ++A
Sbjct: 1083 VLWRTFQQYWRTPDYLYSKFFLT-IFAALFIGFT-------FFKVGTSLQGLQNQ-MFAV 1133
Query: 560 ALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDF--------KFFPPWAYAIPSWILKIPI 611
+ + PL + LP F QRD + F A+ ++IP
Sbjct: 1134 FMATVLFNPLIQQY---------LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPY 1184
Query: 612 SFLEPAVWVFLSYYVIGYDPNA-------GRFFKQYLLLLAFNQMISGLFRFLGAIGRNL 664
+ + ++ F+ YY +G+ NA R +LL F S L + + + N
Sbjct: 1185 NLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNA 1244
Query: 665 VVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713
A S + L+ G + + +W + Y SP Y +L+
Sbjct: 1245 DNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 8e-40
Identities = 73/246 (29%), Positives = 122/246 (49%), Gaps = 38/246 (15%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
K+ IL DVS V+ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
++ AY+ Q D + +TVRETL + A R+ + I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------RLPRKSSDAIRKKRVED 125
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG-EMMVGP 341
V ++ A T +G + +G+SGG+++RV+ +++ P
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
+ L +DE ++GLDS T +V+ Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KV-LILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 402 QIVYQG 407
+IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 156 bits (396), Expect = 2e-39
Identities = 137/529 (25%), Positives = 249/529 (47%), Gaps = 54/529 (10%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
RT +++Q D +TVRETL F + + + L+++EK +
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFCSLLR-------LPKSLTKQEK-------------I 179
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG-EMMVGPALA 344
A + VI++ LGL C +T++G+ RG+SGG++KRV+ EM++ P+L
Sbjct: 180 LVAES------VISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAA 464
+ G + +FES+GF ADFL ++ + Q + +++P VK Q VA+
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN--VK-QSLVAS 343
Query: 465 FQSFHVGQ-KLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVY 523
+ + + K + E+ + + +TK + R + ++ +L++R+
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 524 IFKLIQIGSITLVYMTLFFRTKM--HKD--SVTDGGIYAGALFFTIVMPLFSGFAEISMT 579
+ + V M H D V D G LFF + +F G +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQD---RLGLLFF---ISIFWGVFPSFNS 457
Query: 580 IVKLP----VFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGR 635
+ P +F K+R + +Y + + +P+ + P +++ ++Y++ G P G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 636 FFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGF 684
F L+LL + + GL LGA + A T + +L + GGF
Sbjct: 518 FLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGF 566
|
Length = 659 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 4e-39
Identities = 80/223 (35%), Positives = 136/223 (60%), Gaps = 6/223 (2%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+LNGV+G PG + A++G SG+GK+TL++ LAGR G TG I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
G+ Q+DI P +TV E+L + + LRLP + + + + E V+ + L +++G
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093
++HQPS +++ FD + ++ GR ++ G G + ++YFE
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFGK-GSDA---MAYFE 299
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 5e-37
Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 51/294 (17%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
T L VS V+PG + LLGP +GKTTLL LAG L P+ SG + G+++
Sbjct: 13 KYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDV 69
Query: 220 DEFVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ + R Y+ Q + E+TVRE L F AR G+
Sbjct: 70 VKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS-------------------- 109
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
EEA + L++ GL+ A+ V R +SGG K+R++
Sbjct: 110 --------------KEEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALA 150
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS--LLQPAPETYNLFDDI 395
++ L +DE ++GLD + +I ++ T ++S +L+ E L D +
Sbjct: 151 LLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRV 207
Query: 396 ILLSDGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSKKDQEQYWA 447
I+L+DG+I+ +G E + E F G P+R +A+ L+ + K +E+
Sbjct: 208 IILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 8e-37
Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT 376
G+E RG+SGG++KRV+ E +V A L D + GLDSST +I+ C + + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
+SL Q + E Y+LFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 2e-34
Identities = 44/93 (47%), Positives = 58/93 (62%), Gaps = 2/93 (2%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-- 222
+ ILKD SG+VKPG + L+LG P SG +TLL ALA + + ++ V G + YNG EF
Sbjct: 20 IPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255
Y+S+ D H +TVRETL FA RC+G
Sbjct: 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 5e-33
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 38/219 (17%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKK 923
K+ +L SG +PG + ++G G+G +TL+ LA R T G + GDI +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1042 VD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
D T +++Q S +I++ FD++ ++ GR++Y G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-32
Identities = 150/599 (25%), Positives = 269/599 (44%), Gaps = 94/599 (15%)
Query: 150 DLLNYLHILPS-------TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202
D +NY +P+ T+ L +L++V+G +PG LT L+G +GKTTL+ LAG+
Sbjct: 871 DDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 930
Query: 203 DPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEM 262
+ G + +G + R + Y Q+D H ++TVRE+L ++A + +
Sbjct: 931 TGGY-IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------L 982
Query: 263 LTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322
E+S+ EK + D ++++ LD D +VG
Sbjct: 983 PKEVSKEEKM------------------------MFVDEVMELVELDNLKDAIVGLPGVT 1018
Query: 323 GVSGGQKKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
G+S Q+KR+T E++ P++ +FMDE ++GLD+ IV +N T V ++
Sbjct: 1019 GLSTEQRKRLTIAVELVANPSI-IFMDEPTSGLDARAA-AIVMRTVRNTVDTGRTVVCTI 1076
Query: 382 LQPAPETYNLFDDIILLS-DGQIVYQGP----RELVLEFFESM-GF-KCPKRKGVADFLQ 434
QP+ + + FD+++L+ GQ++Y GP ++E+FE++ G K ++ A ++
Sbjct: 1077 HQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWML 1136
Query: 435 EVTSKKDQEQYWAHKDRPYRFVKVQ-EFVAAFQSFHVGQK---LSDELQTPFDKSKSHRA 490
EV+S + VK+ +F ++S + Q+ L EL TP +
Sbjct: 1137 EVSSLAAE-------------VKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYF 1183
Query: 491 ALTTKVYGVGKRELLKACTSRELLLMKR----NSFVYIFKLIQIGSITLVYMTLFFRTKM 546
A G+ K+C ++ R N + F L L+ T+F++
Sbjct: 1184 ATQYSQSTWGQ---FKSCLWKQWWTYWRSPDYNLVRFFFTLAA----ALMVGTIFWKVGT 1236
Query: 547 HKDSVTDGGIYAGALFFTIVMPLFSGFAEIS----MTIVKLPVFYKQRDFKFFPPWAYAI 602
+ + D + GA++ + LF G S M V+ VFY++R + YAI
Sbjct: 1237 KRSNANDLTMVIGAMYAAV---LFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAI 1293
Query: 603 PSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGL-FRFLG--- 658
+ +IP ++ + + Y ++ ++ A +FF Y F S L F + G
Sbjct: 1294 AQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFY-----FISFFSFLYFTYYGMMT 1348
Query: 659 -AIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716
++ N VA F + + GF + R ++ KWW W YW PV + G++ +++
Sbjct: 1349 VSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQY 1407
|
Length = 1470 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 4e-31
Identities = 60/206 (29%), Positives = 101/206 (49%), Gaps = 20/206 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA- 928
++ +S G + L+G +GAGKTT + +L G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 929 -RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ GYC Q D +TV E L + A L+ + K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKR 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1048 VVCTIHQPSIDIFEAF-DELFLMKRG 1072
++ T H S+D EA D + +M G
Sbjct: 185 IILTTH--SMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 1/111 (0%)
Query: 146 TIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205
T+ L +K +LK+VSG KPG LT ++GP +GK+TLL ALAG+
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTG- 61
Query: 206 LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
L VSG V NG +D+ + Y+ Q D +TVRETL FAA+ +G+
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 4e-29
Identities = 72/208 (34%), Positives = 105/208 (50%), Gaps = 15/208 (7%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--KKQ 924
K L+GVS PG+ L+G +GAGKTTLM +LA G IRI G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ R GY Q P TV E L Y AWL+ + S+ K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 7e-28
Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 23/216 (10%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P+ L+ +S + G ++G +G+GK+TL+ +L G G +G++ + G +
Sbjct: 10 PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTK 67
Query: 925 ET---FARISGYCEQNDIHSP---FV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
+ R G QN P F TV E + + PE E R +EE +E
Sbjct: 68 LSLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALE 120
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
LV L+ LR LS Q++R+ IA L +P I+ +DEPT+GLD ++
Sbjct: 121 LVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ G+T++ H + E D + +++ G
Sbjct: 176 LLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-27
Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 59/203 (29%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
L+ VS + G + AL+G +G+GK+TL+ +AG +G+I I G +
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAK----- 65
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ L+ LR+ +
Sbjct: 66 ------------------------------------------------LPLEELRRRIGY 77
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
+P LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQ---LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVI 134
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H P A D + ++K G
Sbjct: 135 IVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 33/64 (51%), Positives = 43/64 (67%)
Query: 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKP 780
W K S E+LG VL+SR F AYWYW+G+GAL GF +L N+ F LALT+LN K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 781 RAVI 784
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 8e-24
Identities = 61/217 (28%), Positives = 101/217 (46%), Gaps = 31/217 (14%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQ 924
+L+ +S + G +T ++G +G+GK+TL+ LAG +G++ + G K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLF-----YSAWLRLPPEVNSETRKMFIEEVMELVE 979
A+ Y Q+ +TVYE + + P S+ + +EE +EL+
Sbjct: 74 --LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRP----SKEDEEIVEEALELLG 127
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L+ L V+ LS +R+R+ IA L I+ +DEPTS LD V+ +R
Sbjct: 128 LEHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLR 182
Query: 1040 N-TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ + G TVV +H D+ A D L L+K G
Sbjct: 183 DLNREKGLTVVMVLH----DLNLAARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 61/210 (29%), Positives = 101/210 (48%), Gaps = 25/210 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L VS +PG A++G +GAGK+TL+ + G + T +G IR+ G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 930 ISGYCEQN---DIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
I GY Q D P ++V + L+ L S+ K ++E +E V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRL---SKADKAKVDEALERVGLSE 124
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 125 LADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR 179
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T++ H + + E FD + L+ R
Sbjct: 180 REGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 7e-23
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L +S + G +TAL+G +GAGK+TL+ + G +G+I+I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 931 SGYCEQNDIHSPF-----VTVYE-----SLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
GY Q S +TV + W R N + ++ ++E +E V +
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRL---NKKDKEK-VDEALERVGM 129
Query: 981 KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ LR +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G+TV+ H + + FD + + R
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 49/211 (23%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
+L+ +S + G + ++G +GAGK+TL+ LAG + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1044 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
G+TVV +H ++ D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL-AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 3e-22
Identities = 66/219 (30%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ 924
K+ L GVS + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 925 ETFAR---ISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENV------ELPLLLAGVPKKERRERAEELLE 126
Query: 980 LKPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
VGL + LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1035 MRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
M +R + G T+V H P ++ E D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 3e-22
Identities = 46/205 (22%), Positives = 80/205 (39%), Gaps = 53/205 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
L+ +S G + L+G +GAGKTTL+ ++ G + G +I++ G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLSG--------------------------------- 98
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 99 -------G----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + H + D + ++ G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 2e-21
Identities = 61/215 (28%), Positives = 94/215 (43%), Gaps = 35/215 (16%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L+ +S G + AL G +GAGKTTL +LAG +++ G I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 929 RISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK---PLR 984
+ GY Q+ D +V E L L+ N + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPL- 125
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 126 ----------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
G+ V+ H D FL K R + +
Sbjct: 176 GKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 25/223 (11%)
Query: 859 MKLQGVPED--KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-G 913
++L+G+ + + L+ +S PG AL+G SG GKTTL+ ++AG R G I
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 914 DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
++G P ++ R G Q+ P +TV E++ + LR P+ R + E
Sbjct: 61 GRDVTGVPPER----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRE 113
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
++ELV L+ L + LS Q++R+ +A L PS++ +DEP S LDA+
Sbjct: 114 LLELVGLEGLLNRY-----PHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREE 168
Query: 1034 VMRTVRNT-VDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ ++ + G T + H D EA D + +M G
Sbjct: 169 LREELKELQRELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 9e-21
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
L D+S +K G L++GP SGK+TLL L G L P+ SG V +G ++ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GP 341
EE + L+++GL+ D +SGGQK+RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDI 395
+ L +DE + GLD + +++ K+ + G +I LL L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 2e-20
Identities = 69/256 (26%), Positives = 107/256 (41%), Gaps = 62/256 (24%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ D+S V G + LLG +GKTT L L G+L P+ SG NG+++ +
Sbjct: 16 PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI---RTD 69
Query: 226 RTAA-----YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R AA Y Q D E+TVRE L F AR +G+
Sbjct: 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL------------------------ 105
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E + L+VLGL A+ +SGG K++++ ++G
Sbjct: 106 ----------PKSEIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIALIG 150
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDII 396
L +DE ++GLD ++ I + + G ++I S+ E L D I
Sbjct: 151 GPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEALCDRIA 203
Query: 397 LLSDGQIVYQG-PREL 411
++SDG++ G P+EL
Sbjct: 204 IMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.6 bits (223), Expect = 2e-20
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 53/208 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN VS G + AL+G SG+GK+TL+ +AG G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1047
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1048 VVCTIHQPSIDIFEAF---DELFLMKRG 1072
VV H D+ EA D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-20
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 19/216 (8%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+ L VS G L+G +G+GK+TL+ +L G +G++ + G E
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSSE 71
Query: 926 T----FARISGYCEQNDIHSPFV-TVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVE 979
+ G QN F TV + + + L LP E E + + E +ELV
Sbjct: 72 KSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE---EIEE-RVAEALELVG 127
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L+ L LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 128 LEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1040 NTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074
+ G+T++ H + E D + ++ G
Sbjct: 183 KLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKI 217
|
Length = 235 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 31/230 (13%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIR 916
K+ G+ +K+ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 917 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
++ +K+ + + G+ QN + P +TV E+ + LP + ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLEN------VELPLLIAGKSAGRRKR 120
Query: 973 EVMELVELKPLRQSLVGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
EL+E ++GL + LS Q++R+ IA L+ NP II DEPT L
Sbjct: 121 AAEELLE-------VLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNL 173
Query: 1027 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075
D++ A V+ +R + G+T++ H P ++ + D + +K G E
Sbjct: 174 DSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKIE 221
|
Length = 226 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 7e-20
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--- 922
D L+ ++ + G LTAL+G SGAGK+TL+++L G G+IR++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 923 KQETFARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
E + + + QN P++ T+ E++ L P+ + E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENI-----LLARPDASDEE----IIAALDQAG 435
Query: 980 LKPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
L GL V GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ ++ +TV+ H+ D +A D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 1e-19
Identities = 71/256 (27%), Positives = 112/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G +T +LGP SGK+TLL LAG L P SG V +G ++ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ +E I + L++LGL+ AD V + +SGG+++RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
LA L +DE ++ LD + +++ + ++ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRD-LNREKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-19
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 18/189 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ A G + AL+G +GAGK+TL+ L G R G + D Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 930 IS-GYCEQN---DIHSPFVTVYESLFYSAW-LRLPPEVNSETRKMFIEEVMELVELKPLR 984
G Q+ + + V + + + L L E + + E + V LR
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA---EVERR-VREALTAVGASGLR 121
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1045 GRTVVCTIH 1053
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 33/86 (38%), Positives = 56/86 (65%), Gaps = 1/86 (1%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
RG+SGG++KRV+ +V LF+DE ++GLDSS+ Q+++ ++ T + S+
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICSI 168
Query: 382 LQPAPETYNLFDDIILLSDGQIVYQG 407
QP+ E + LFD ++LLS G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 4e-19
Identities = 58/199 (29%), Positives = 88/199 (44%), Gaps = 32/199 (16%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--K 922
++GV+ R G + +G +GAGKTT + +L R T G R++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP--------PEVNSETRKMFIEEV 974
+ R G Q + +V E L + L P+ +E R EE+
Sbjct: 60 EPRKVRRSIGIVPQ------YASVDEDL--TGRENLEMMGRLYGLPKDEAEER---AEEL 108
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+EL EL VG S R+RL IA L+ P ++F+DEPT+GLD R +
Sbjct: 109 LELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163
Query: 1035 MRTVRNTVDTGRTVVCTIH 1053
+R + G T++ T H
Sbjct: 164 WDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 4e-19
Identities = 61/224 (27%), Positives = 94/224 (41%), Gaps = 27/224 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L VS + PG AL+G SGAGK+TL+ L G T G + I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 929 RI-SGYCEQNDIHSPFVTVYE----------SLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
R G Q ++V E S + S + P E E ++ +E
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE---EKQRAL--AALER 131
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V L LS Q++R+ IA L+ P +I DEP + LD ++ VM
Sbjct: 132 VGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDL 186
Query: 1038 VRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
++ + G TV+ ++HQ D+ + + + + GR V+ GP
Sbjct: 187 LKRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-19
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 5/112 (4%)
Query: 148 FEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK 207
+++L NY +P +L ++SG VKPG LT L+G +GKTTLL LAG+ +
Sbjct: 6 WKNL-NY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV- 61
Query: 208 VSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259
++G + NG +D+ R+ Y+ Q D H +TVRE L F+A +G+
Sbjct: 62 ITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLSVE 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 8e-19
Identities = 62/213 (29%), Positives = 104/213 (48%), Gaps = 16/213 (7%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQET 926
++GVS +PG +T L+G +GAGKTT + +LAG G+ T D + P E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP--AEA 76
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R+ G+ + +T E+L Y A L + + +EE+ + + ++ L
Sbjct: 77 RRRL-GFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDR 132
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 133 RVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGK 187
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
++ + H ++ D + ++ R GR VY G
Sbjct: 188 CILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 1e-18
Identities = 59/201 (29%), Positives = 87/201 (43%), Gaps = 36/201 (17%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
LV L+ VS + RPG + L+G +GAGKTTL ++++G R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 925 ------ETFARISGYCEQNDIHSPF--VTVYE--------SLFYSAWLRLPPEVNSETRK 968
TF Q F +TV E L E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 969 MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1029 RAAAIVMRTVRNTVDTGRTVV 1049
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 62/207 (29%), Positives = 99/207 (47%), Gaps = 21/207 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GDIRISGYPKKQE---T 926
L+ VS RPG AL+G +GAGK+TL +L T Y+ G I ++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
AR+ +Q + ++V ++L Y A L + R I E++ + L
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1045
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V+ H +D EA D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 82.4 bits (205), Expect = 5e-18
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 54/211 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
P +L VS +PG A++G SG+GK+TL+ +L T G I + +
Sbjct: 11 PGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD 70
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
E+ + Y Q+ PF LF S T I E
Sbjct: 71 --LESLRKNIAYVPQD----PF------LF------------SGT----IRE-------- 94
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 ------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA- 141
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G+TV+ H+ S D + ++ G
Sbjct: 142 LAKGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 5e-18
Identities = 51/192 (26%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQET 926
L+G++ + G L+G SGAGK+TL+ ++ + +G IR++G +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSDLRGRAIP 74
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ R G Q+ P VYE++ EV + + V +EL L
Sbjct: 75 YLRRKIGVVFQDFRLLPDRNVYENV------AFALEVTGVPPREIRKRVPAALELVGLSH 128
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ G
Sbjct: 129 KHRALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAG 186
Query: 1046 RTVVCTIHQPSI 1057
TVV H +
Sbjct: 187 TTVVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 8e-18
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 33/218 (15%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQE 925
+L GV R G + A++G SG+GK+TL+ ++ G R G I G+ +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 926 TFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
R G Q + + TV+E++ + LR E ++ EE+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 981 KPLRQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
K L VGL G LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-LE--AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1036 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R+ G T + H F D + ++ G
Sbjct: 177 DLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDG 213
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
I E + P +T E+L A L + I+EV+++V LK + V
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKDSAKKKVK 125
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 126 -----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1050 CTIHQ 1054
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-17
Identities = 71/262 (27%), Positives = 110/262 (41%), Gaps = 42/262 (16%)
Query: 823 TEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPG 882
T E K + LP + F+ V + P+D VL +S PG
Sbjct: 452 TPPEQEG-DKTLIHLPKLQGEIEFENVSFRYG----------PDDPPVL-EDLSLEIPPG 499
Query: 883 VLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKKQ---ETFARISGYCEQN 937
A++G SG+GK+TL+ +L G Y G I + G + R GY Q+
Sbjct: 500 EKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD 555
Query: 938 DIHSPFVTVYESLFYSAW---LRL-PPEVNSET--RKMFIEEVMELVELKPLR-QSLVGL 990
LF + + L PE E + E +E P+ + VG
Sbjct: 556 PF----------LFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGE 605
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
G N LS QR+RL +A L++ P I+ +DE TS LD AI+++ + + GRTV+
Sbjct: 606 GGAN-LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QILQGRTVII 663
Query: 1051 TIHQPSIDIFEAFDELFLMKRG 1072
H+ S + D + ++ +G
Sbjct: 664 IAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 61/260 (23%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
+ + LK VS ++ G ++GP SGK+TLL L G P+ SG V +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVD 64
Query: 216 GHNMDEFVPERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
G ++ + + AA ++ Q N + ++T E + GV + R
Sbjct: 65 GTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-------ER 117
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---S 325
RE+A + L+ +GL GD + S
Sbjct: 118 RERAEEL---------------------------LERVGL--------GDRLNHYPSELS 142
Query: 326 GGQKKRVTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
GGQ++RV + P + + DE TG LDS T +++ ++ ++ +GT ++ ++
Sbjct: 143 GGQQQRVAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVT 198
Query: 384 PAPETYNLFDDIILLSDGQI 403
PE D II L DG+I
Sbjct: 199 HDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 60/209 (28%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
+ GVS R G + L+G +GAGKTT + +L + T G ++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G Q+ +T +E+L+ A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1046
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1047 TVVCTIHQPSIDIFEA---FDELFLMKRG 1072
T++ T H + EA D + ++ G
Sbjct: 184 TILLTTH----YMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 28/231 (12%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GDIRISG 919
P K L N ++ PG A++G SGAGK+TL+ + + G I DI
Sbjct: 12 PNGKQALKN-INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR 70
Query: 920 YPKKQETFARISGYCEQNDIHSPFVTVYESL---------FYSAWLRLPPEVNSETRKMF 970
K ++ RI G Q+ +TV E++ + + L E + E
Sbjct: 71 GKKLRKLRRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSA 129
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+E V L + R + LS Q++R+ IA L P +I DEP + LD +
Sbjct: 130 LERV-GLADKAYQR--------ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
Query: 1031 AAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ VM ++ + G TV+ +HQ +D+ + + + + + G V+ G
Sbjct: 181 SKQVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 56/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
L +N VS RPG + L+G +GAGKTTL +++ G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 925 ------ETFARISGYCEQNDIHSPFVTVYESLF--------YSAWLRLPPEVNSETRKMF 970
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 971 I-EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1030 AAAIVMRTVRNTVDT-GRTVV 1049
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-17
Identities = 58/244 (23%), Positives = 105/244 (43%), Gaps = 45/244 (18%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+ F V +S P ++ L+ VS R G A++G G+GK+TL+ +L
Sbjct: 2 RIEFRNVSFSY-----------PNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLL 50
Query: 903 AGRKTGGYI--TGDIRISGYPKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLR 957
AG Y +G + + G +Q A + GY Q D+ + T+ +++ A
Sbjct: 51 AGL----YKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ-DVTLFYGTLRDNITLGA--- 102
Query: 958 LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP---------GVNGLSTEQRKRLTIAV 1008
P + E ++ EL + + P GLS QR+ + +A
Sbjct: 103 --PLADDE-------RILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153
Query: 1009 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068
L+ +P I+ +DEPTS +D + + +R + +T++ H+PS+ + D + +
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIV 210
Query: 1069 MKRG 1072
M G
Sbjct: 211 MDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
++ +S + G L+G SG GKTTL+ ++AG + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L+
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1042
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1043 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRG-------GREVYVGP 1080
+ G T V H D EA D + +M G E+Y P
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 64/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L V+ G + A++G SGAGK+TL+ L G T G I + ++I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 929 RIS-GYCEQNDIHSPFVTVYE-----SLFYSAWLR----LPPEVNSETRKMFIEEVMELV 978
R G Q P ++V E L Y++ R L + E + ++ + +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDALERVG 136
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L Q + LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 137 ILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1039 R--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ N D G TV+ +HQ +D+ + + + + + GR V+ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 63/258 (24%), Positives = 105/258 (40%), Gaps = 48/258 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFV 223
LKDVS ++ G LL+GP SGK+TLL L G L P+ + V G T + ++ E
Sbjct: 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELR 78
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ + Q+ D+ + TV + +AF G+ R E
Sbjct: 79 --QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------PREEIEE--------- 117
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGP 341
L+++GL+ D + SGGQK+RV G + +GP
Sbjct: 118 ---------------RVAEALELVGLEELLDRPPFNL-----SGGQKQRVAIAGVLAMGP 157
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
+ L +DE + GLD +++ K+ + G +I + D +++L DG
Sbjct: 158 EI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
Query: 402 QIVYQGPRELVLEFFESM 419
+I+ G + E +
Sbjct: 216 KILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 21/196 (10%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
VL +G+S G L G +G+GKTTL+ ++AG G I D P E
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 928 ARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ +N + P +TV E+L F++A+L ++ I +E V L PL
Sbjct: 76 HYLG---HRNAMK-PALTVAENLEFWAAFLG--------GEELDIAAALEAVGLAPL--- 120
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 121 -AHLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178
Query: 1047 TVVCTIHQPSIDIFEA 1062
V+ H P + + A
Sbjct: 179 IVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 67/248 (27%), Positives = 103/248 (41%), Gaps = 41/248 (16%)
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP 881
L A K V SL F V + + L VS P
Sbjct: 301 LDAAPRPLAGKAP-VTAAPAPSLEFSGVSVAY------------PGRRPALRPVSFTVPP 347
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK---KQETFARISGYCEQND 938
G AL+G SGAGK+TL+++L G G I ++G P +++ + Q+
Sbjct: 348 GERVALVGPSGAGKSTLLNLLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQH- 404
Query: 939 IHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-VGL---- 990
PF+ T+ E++ RL S+ I E +E L +L GL
Sbjct: 405 ---PFLFAGTIAENI------RLARPDASDAE---IREALERAGLDEFVAALPQGLDTPI 452
Query: 991 -PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G GLS Q +RL +A + + ++ +DEPT+ LDA A V+ +R + GRTV+
Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVL 511
Query: 1050 CTIHQPSI 1057
H+ ++
Sbjct: 512 LVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-16
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 13/213 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ +S + G L AL+G SGAGK+TL+ ++AG G I + R+ R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G+ Q+ P +TV +++ + +R P + +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR--VEELLRLVQLEGLADR-- 133
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1047
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G T
Sbjct: 134 -YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
V H + E D + ++ +G E VGP
Sbjct: 191 TVFVTHDQE-EALELADRVVVLNQGRIEQ-VGP 221
|
Length = 345 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 65/215 (30%), Positives = 99/215 (46%), Gaps = 35/215 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L +S + G AL+G SG GK+TL+ ++AG R T G ++ + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
GY Q D P++TV +++ L E+ + E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNV------ALGLELQGVPKAEARERAEELLEL-------VG 120
Query: 990 LPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1043
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1044 TGRTVVCTIHQPSIDIFEAF---DELFLM-KRGGR 1074
TG+TV+ H DI EA D + ++ R GR
Sbjct: 181 TGKTVLLVTH----DIDEAVFLADRVVVLSARPGR 211
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-16
Identities = 62/193 (32%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L+GVS PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R C Q D H TV E+L + P+ E + +E V L ++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 989 -GLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
GL V G LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1043 DTGRTVVCTIHQP 1055
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 5e-16
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 18/173 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L +S G +TAL+G SG GK+TL+ +L G G++ + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD 75
Query: 929 RIS-----GYCEQNDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ G Q +PF ++Y+++ Y L E +EE + L
Sbjct: 76 VLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWD 131
Query: 983 -LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
++ L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 132 EVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 8e-16
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 14/182 (7%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARIS 931
VS G +T L+G +GAGKTTL+ ++A G +T D + P +I
Sbjct: 21 VSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR--RKIG 78
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ +++ +T E+L Y A L ++ + K I E+ + ++L VG
Sbjct: 79 VLFGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-- 132
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ +
Sbjct: 133 ---EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFS 189
Query: 1052 IH 1053
H
Sbjct: 190 SH 191
|
Length = 245 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+D+S V+ G +T L+GP +GK+TLL A+ G L PS SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L++++K
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ +EA L+ +G++ D +G+ +SGGQK+RV +
Sbjct: 119 -------KVDEA-------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL---LQPAPETYNLFDDIILLSD 400
L +DE TG+D + +I + K+ + G V+ + L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKE-LR-QEGKTVLMVTHDLGLVMA---YFDRVICL-N 213
Query: 401 GQIVYQGPRELVLE 414
++ GP E VL
Sbjct: 214 RHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 53/257 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFV 223
LKDVS + PG L+GP +GK+TLL L G ++P+ SG V +G ++ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I Q N I ++V E + + R T + + EK +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV-LSGRLGRRSTWRSLFGLFPKEEKQRAL---- 126
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
L+ +GL A D++ SGGQ++RV +M
Sbjct: 127 ---------------------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIARALM 160
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISLLQPAPETYNL----FD 393
P L L DE LD +++ Q+++ K+ I+ G T ++SL Q +L D
Sbjct: 161 QQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYAD 213
Query: 394 DIILLSDGQIVYQGPRE 410
I+ L DG+IV+ GP
Sbjct: 214 RIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 73/250 (29%), Positives = 100/250 (40%), Gaps = 48/250 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L P SG+VT +G + P
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRD-PSFV 73
Query: 228 AAYISQHDNHIG---EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
I G +T RE L + AR L LSR+E A I
Sbjct: 74 RRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI--------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
A + K L L D VG S G K++V +V
Sbjct: 115 ----------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSI 154
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE ++GLD T + + KQ N G AVI E L D +I+L G++V
Sbjct: 155 LVLDEPTSGLDIRTRRKFHDFIKQL--KNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV 212
Query: 405 YQGPRELVLE 414
+G E +
Sbjct: 213 LEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 61/224 (27%), Positives = 102/224 (45%), Gaps = 27/224 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT---GDIRISGYPKKQE 925
+++GV PG LT L+G +G+GK+TL+ +LAG R G + D+ G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLH--GLSRRAR 73
Query: 926 TFARISGYCEQNDIHSPFVTVYESL------FYSAWLRLPPEVNSETRKMFIEEVMELVE 979
AR EQ+ + +TV + + S W P + + + E
Sbjct: 74 --ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTE 126
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L L ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083
TG TVV +H +++ ++ + ++ GGR V GP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGPPRE 223
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 60/210 (28%), Positives = 94/210 (44%), Gaps = 27/210 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L V+ G L+G SG GK+TL+ ++AG T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R QN P +TVYE++ + LR +P + ++EV +L+ L+ L
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR----VKEVAKLLGLEHLLNRK 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TG 1045
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ + G
Sbjct: 131 P-----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLG 184
Query: 1046 RTVVCTIHQPSIDIFEA---FDELFLMKRG 1072
T + H D EA D + +M G
Sbjct: 185 TTTIYVTH----DQVEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 2e-15
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 57/213 (26%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P + +L VS + PG A++G SG+GK+TL ++ G R T G +R+ G
Sbjct: 11 PGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADI 66
Query: 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
Q GY Q+D ++F + E
Sbjct: 67 SQWDPNELGDHVGYLPQDD-----------------------------ELFSGSIAE--- 94
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
N LS QR+RL +A L NP I+ +DEP S LD + + +
Sbjct: 95 --------------NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIA 140
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T + H+P + D + +++ G
Sbjct: 141 ALKAAGATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 57/221 (25%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ +L ++ + G A++G SG GK+TL+ ++AG + T G + D R P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD 73
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
GY Q D P++TV +++ L E+ +++ E EL+EL
Sbjct: 74 ------IGYVFQEDALLPWLTVLDNV------ALGLELRGKSKAEARERAKELLEL---- 117
Query: 985 QSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1040 NTV-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREV 1076
+T +TV+ H D+ EA D + ++ +
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP---KKQETF 927
LL+GVS RPG + A++G +GAGK+TL+ L+G + +G++ ++G P E
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEEL 73
Query: 928 ARISGYCEQNDIHS-PFVTVYESLFYSAWLRLPPEVNSETRK--MFIEEVMELVELKPLR 984
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1038
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLH--DLNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 60/203 (29%), Positives = 91/203 (44%), Gaps = 37/203 (18%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY------- 920
V+L+GV G + A++G SG+GK+TL+ ++ G R G+I I G
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSE 77
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYES--LFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ E R+ G Q +TV+E+ +LP + ELV
Sbjct: 78 EELYEIRKRM-GVLFQQGALFSSLTVFENVAFPLREHTKLPES-----------LIRELV 125
Query: 979 ELKPLRQSLVGLPGVNG------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+K LVGL G LS RKR+ +A + +P ++F+DEPTSGLD +A
Sbjct: 126 LMK---LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 1033 IVMRTVRNTVDT-GRTVVCTIHQ 1054
++ +R D G TV+ H
Sbjct: 183 VIDELIRELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 4e-15
Identities = 57/188 (30%), Positives = 94/188 (50%), Gaps = 18/188 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+NGVS + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 929 RIS-GYCEQNDIHSPF--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ GY Q S F +TV E++ A L + ++ + R+ +EE++E + LR+
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENI--LAVLEIR-GLSKKEREEKLEELLEEFHITHLRK 128
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKAS-----SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1046 RTVVCTIH 1053
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ---ETFARISGYCE 935
+T + G SGAGK+TL+ +AG + GG I + + +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q P + V E+L + L + N E ++ ++E+++L+ L L
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ 1054
LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+ H
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHD 191
Query: 1055 PSIDIFEAF---DELFLMKRG 1072
S EA D + +M+ G
Sbjct: 192 LS----EAEYLADRIVVMEDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 6e-15
Identities = 71/273 (26%), Positives = 115/273 (42%), Gaps = 60/273 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
+LKDV+ ++ G +LLGP GK+TLL +AG +P+ SG + +G ++ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+R A + Q+ H MTV E +AF + +GV E+ +R K
Sbjct: 74 KRGIAMVFQNYALYPH---MTVYENIAFGLKLRGVPKA-----EIDKRVKEV-------- 117
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
K+LGL+ + +SGGQ++RV +V
Sbjct: 118 ---------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARALVRK 151
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
+DE + LD+ + + K +H GT I + E L D I++++DG
Sbjct: 152 PKVFLLDEPLSNLDAKLRVLMRSEIK-KLHERLGTTTIYVTHDQVEAMTLADRIVVMNDG 210
Query: 402 QIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+I G P EL ++ P VA F+
Sbjct: 211 RIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 59/214 (27%), Positives = 101/214 (47%), Gaps = 25/214 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----TGDIRISGYPKKQETF 927
L+ +S + G + L+G +GAGKTT + ++ G I +G++ G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQS 986
RI GY + P + V + L Y A L+ L E E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1047 TVVCTIHQPSIDIFEAF-DELFLMKRGGREVYVG 1079
TV+ + HQ +++ E D + L+ + GR V G
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNK-GRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 7e-15
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ L + +S G + G +GAGKTTL+ +LAG R G + + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E++ + Y +T E+L F+ + N+ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHFWQRFHG---SGNAAT----IWEALAQVGLAGL 123
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 124 ED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA 178
Query: 1044 TGRTVVCTIHQP 1055
G V+ T HQP
Sbjct: 179 QGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 62/244 (25%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L D+S V+PG LLGP GKTTLL +AG P SG + +G ++ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R + Q +TV E +AF + +GV E+ R +
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPAL 343
L+++GL+ + +SGGQ++RV + P+L
Sbjct: 115 ------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE + LD+ ++ K+ + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELKE-LQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 66/287 (22%), Positives = 108/287 (37%), Gaps = 81/287 (28%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D+S +K G L LLGP +GK+TLL +AG P +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ ++ D +G MTV + +AF + + E +E R + +
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVEEL-- 121
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L + + D +SGGQ++RV
Sbjct: 122 ------------------------------LRLVQLEGLADRYPAQLSGGQRQRVA---- 147
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ---NIHINSGTAVISLLQPAPETY 389
+ ALA L +DE LD ++ ++ +H G + + E
Sbjct: 148 -LARALAVEPKVLLLDEPFGALD----AKVRKELRRWLRKLHDRLGVTTVFVTHDQEEAL 202
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
L D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 203 ELADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 58/185 (31%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS G + AL+G +GAGKTTL+ + G G I I+G P
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHE 71
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R GY + P +TV E+L A+ R + RK +E V EL LK R
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK-----RKARLERVYELFPRLKERR 126
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R D
Sbjct: 127 KQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181
Query: 1045 GRTVV 1049
G T++
Sbjct: 182 GVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 66/263 (25%), Positives = 106/263 (40%), Gaps = 74/263 (28%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHN 218
+ + LKDV+ ++ G ++GP SGK+T LL L G LD P+ SG V NG +
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGLDKPT---SGEVLINGKD 68
Query: 219 MDEFVPERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
+ + + A ++ Q+ N + ++TV E + G RR++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG--------RRKR 120
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMVGDEMRRGVSGGQKK 330
AA + L+VLGL D + +SGGQ++
Sbjct: 121 AA--------------------------EELLEVLGLEDRLLKKKPSE-----LSGGQQQ 149
Query: 331 RVTTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVI----S 380
RV + AL + DE TG LDS T +++ ++ ++ G +I
Sbjct: 150 RV-----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD 202
Query: 381 LLQPAPETYNLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 203 -----PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 3e-14
Identities = 67/259 (25%), Positives = 110/259 (42%), Gaps = 50/259 (19%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK V+ VK G + ++GP SGK+TL +AG PS +V SG + + G ++ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG--HPSYEVTSGTILFKGQDLLELEPD 72
Query: 226 RTAA---YIS-QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
A +++ Q+ I ++ E L A +RR + + +
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSA----RGEEPL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-G 340
D+ + L +LG+D + + + G SGG+KKR +M +
Sbjct: 115 DLL--DFLKLLKAK-------LALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALLE 162
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII---- 396
P LA+ +DEI +GLD + + + +I+ Q L + I
Sbjct: 163 PKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQ------RLLNYIKPDYV 215
Query: 397 -LLSDGQIVYQGPRELVLE 414
+L DG+IV G EL E
Sbjct: 216 HVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 3e-14
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
++ VS R G L+G SG+GK+TL +LAG + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 929 RISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R Q+ S P +TV + L LR+ + R+ + E++ELV L P +
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPP--EF 422
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
L P + LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYP--HELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 3e-14
Identities = 59/190 (31%), Positives = 96/190 (50%), Gaps = 15/190 (7%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
DKLV+ +G+S + G L+G +GAGKTT + +L G G I + G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 927 -FARIS-GYCEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
AR G Q D P TV E+L + + L + R + + ++E +L+
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLS---AAAARAL-VPPLLEFAKLENK 131
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1044 TGRTVVCTIH 1053
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 55/177 (31%), Positives = 79/177 (44%), Gaps = 21/177 (11%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRI 917
+ G + LN VS G ++G SG+GK+TL +LAG + + +G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 918 SG--YPKKQET--FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFI 971
G K+ F R Q+ S P TV L LR S+ R I
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP--LRPHGLSKSQQR---I 121
Query: 972 EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
E+++ V L P L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-14
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 33/216 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS RPG + AL+G +GAGK+TLM +L+G G +I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 930 ISGYCEQND-----IH-----SPFVTVYESLFYSAWLRLPPEVNSETRKMFIE--EVMEL 977
S + +H P ++V E++F + + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR-KAMRRRARELLAR 132
Query: 978 VEL-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ L LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 133 LGLDIDPDT-LVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R G ++ H+ ++FE D + +++ G
Sbjct: 187 LIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 4e-14
Identities = 54/202 (26%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQ--- 924
LL+ VS RPG + A++G +GAGK+TL+ L+ G ++ G++R++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 925 ETFARISGYCEQNDIHS----PFVTVYE--SLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
AR Q HS PF TV E ++ + E ++ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1032
+L L LS +++R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1033 IVMRTVRN-TVDTGRTVVCTIH 1053
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 4e-14
Identities = 64/225 (28%), Positives = 99/225 (44%), Gaps = 30/225 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L+ VS G L AL+G SG+GKTTL+ ++AG R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G+ Q+ +TV++++ + LR+ P +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 989 GLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
L + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1044 -TGRTVVCTIHQPSIDIFEAFDELFLMKRG-------GREVYVGP 1080
T V H + E D + +M +G EVY P
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT--GDIRISGYPKKQETF 927
L+ VS + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 928 ARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ Q+ + S P +T+ E + + E RK + ++ V L
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+ P + LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 5e-14
Identities = 58/182 (31%), Positives = 90/182 (49%), Gaps = 11/182 (6%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFARIS 931
VS G + L+G +GAGKTT ++ G R G I D IS P I
Sbjct: 22 VSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI- 80
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
GY Q ++VY++L A L++ ++++E R+ E+ME ++ LR S+
Sbjct: 81 GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG--- 135
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T
Sbjct: 136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLIT 193
Query: 1052 IH 1053
H
Sbjct: 194 DH 195
|
Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 6e-14
Identities = 70/270 (25%), Positives = 99/270 (36%), Gaps = 73/270 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+LK V V+ G + ++GP SGK+TLL + G L P SG V +G ++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R + Q +TV E +AF R T LS E
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLR---------EHTRLSEEE--------- 112
Query: 280 DID--VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
I V K L+ +GL D + +SGG KKRV
Sbjct: 113 -IREIVLEK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV----- 145
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
ALA L DE + GLD + I + +++ G I +
Sbjct: 146 ----ALARALALDPELLLYDEPTAGLDPIASGVIDDLI-RSLKKELGLTSIMVTHDLDTA 200
Query: 389 YNLFDDIILLSDGQIVYQGPRELVLEFFES 418
+ + D I +L DG+IV +G E E S
Sbjct: 201 FAIADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 75/275 (27%), Positives = 112/275 (40%), Gaps = 69/275 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
ILK V+ VK G + ++GP SGK+TL + G P +V G + ++G ++ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFA--ARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
ER A I LAF GV + ++ R A GI P+
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGI--LPEFI 120
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM-RRGV----SGGQKKRVTTGEM 337
+K ++LGLD +E R V SGG+KKR ++
Sbjct: 121 KELKEK--------------AELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
++ P LA+ +DE +GLD + +N ++ G +I+ Q L D
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREE---GRGVLIITHYQ------RLLD 208
Query: 394 DII-----LLSDGQIVYQGPRELVLEFFESMGFKC 423
I +L DG+IV G EL E E G+
Sbjct: 209 YIKPDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 1e-13
Identities = 59/208 (28%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L L DVS V+PG + L+GP +GKTTL ++G L P+ SG V ++G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 225 -ERTAAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
E I Q E+TV E + AA+ + T +L +RRE+
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
EA + L+ +GL AD G+ +S GQ++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVN 364
+ P L L +DE + GL+ T ++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAE 184
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 1e-13
Identities = 61/264 (23%), Positives = 96/264 (36%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
IL VS V G + LLG +GKTTLL + G L P SG + ++G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTR-------YEMLTEL-SRREKA 272
A Y+ + E+TV E L A + R YE+ L RR++
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
AG T+ SGG+++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN-SGTAVISLLQPAPETYN 390
+M P L L +DE S GL +I ++ + G ++ + Q A
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 18/208 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ + G +TA++G +GAGK+TL L G + + G I D + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 930 IS-GYCEQNDIHSPF-VTVYESLFYSAW-LRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
S G Q+ + F +VY+ + + A L+LP + E RK ++ ++ ++ L+
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED---EVRKR-VDNALKRTGIEHLKDK 137
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1045
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1046 RTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATH--DIDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 1e-13
Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 23/242 (9%)
Query: 822 LTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQM---KLQGVPE---DKLVLLNGV 875
LT A A +R + P E E S+ L GV + DK V+ NG+
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-KKQETFARIS-GY 933
S G L+G +GAGK+T+ ++ G + G I + G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 934 CEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVM-ELVELKPLRQSLVGLP 991
Q D TV E+L + + + TR+ IE V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1052 IH 1053
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 56/273 (20%), Positives = 99/273 (36%), Gaps = 74/273 (27%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
P+ + L DVS +K G L+G SGK+TL A+ G L P SG + ++
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP---TSGSIIFD 65
Query: 216 GHNMDEFVPE------RTAAYISQHDNHIGE----MTVRETLAFAARCQGVGTRYEMLTE 265
G ++ + + + Q + + MT+ E +A R G ++ E E
Sbjct: 66 GKDLLKLSRRLRKIRRKEIQMVFQ--DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKE 123
Query: 266 LSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325
G+ + + E +S
Sbjct: 124 A-VLLLLVGVGLPEE---VLNRYPHE--------------------------------LS 147
Query: 326 GGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI- 379
GGQ++RV + ALA L DE ++ LD S QI++ K+ + G ++
Sbjct: 148 GGQRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLF 201
Query: 380 -----SLLQPAPETYNLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 202 ITHDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 56/221 (25%), Positives = 84/221 (38%), Gaps = 57/221 (25%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---- 919
E K +L GV+ + G + A+MG +G+GK+TL + G Y +T G+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 920 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESL--FYSAWLRLPP 960
YP I G VT + L +A
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTNSDFLRAAMNARRGARG 114
Query: 961 EVNSETRKMFIEEVMELVELKPL---RQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSI 1016
+ +++ +E EL+ L R VN G S ++KR I L+ P +
Sbjct: 115 ILPEFIKEL--KEKAELLGLDEEFLER-------YVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+DEP SGLD A IV + + GR V+ H +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 25/199 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQE 925
V+L+ ++ G + A++G SG+GK+TL++++ + G Y+ G KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 926 TFARIS-GYCEQNDIHSPFV-----TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
F R GY QN F TV E+L L+ E R+ +E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENL--DLGLKYKKLSKKEKREK-KKEALEKVG 123
Query: 980 L-KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L L+Q + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLL 177
Query: 1039 RNTVDTGRTVVCTIHQPSI 1057
D G+T++ H P +
Sbjct: 178 LELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 26/217 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISG---YPKKQET 926
L G+S G + +G +GAGKTT + +L+G + T G ++R++G + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG----EVRVAGLVPWKRRKKF 92
Query: 927 FARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVEL--KPL 983
RI Q + V +S +A LPP + E +++L EL P+
Sbjct: 93 LRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSE-LLDLEELLDTPV 151
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
RQ LS QR R IA L+ P I+F+DEPT GLD A + ++
Sbjct: 152 RQ----------LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR 201
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
+ G TV+ T H DI EA L+ GR +Y G
Sbjct: 202 ERGTTVLLTSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 63/221 (28%), Positives = 112/221 (50%), Gaps = 26/221 (11%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQET 926
V+L+ VS G +T+++G +GAGK+TL+ +++ +K G IT D ++ P +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPS-KEL 73
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP---PEVNSETRKMFIEEVMELVELKPL 983
++S ++N I+S TV + + + R P + E R++ I E +E + L+ L
Sbjct: 74 AKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLEDL 128
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + LS QR+R IA+ L + + +DEP + LD + + +M+ +R D
Sbjct: 129 SDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD 183
Query: 1044 T-GRTVVCTIHQPSIDIFEA---FDELFLMKRGGREVYVGP 1080
G+T+V +H DI A D + +K G+ V G
Sbjct: 184 ELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQETF 927
LN +S + PG L L+G +GAGKTTLMDV+ G R G GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 928 ARISGYCEQNDIHSPF--VTVYESLFY------SAWLRLPPEVNSETRKMFIEEVMELVE 979
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
L R L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 3e-13
Identities = 46/203 (22%), Positives = 78/203 (38%), Gaps = 62/203 (30%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H+ ++FE D + +++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-13
Identities = 73/331 (22%), Positives = 126/331 (38%), Gaps = 54/331 (16%)
Query: 751 LGLGALFGFILLLNVG-FALALTFLNQFEKPRAVITEEFESDEQ----DNRIGGTVQLSN 805
L LG L VG A + +L + P + E ++ R+ +
Sbjct: 254 LALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELL---- 309
Query: 806 CGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVP 865
+ + + G S+ F+ V +S
Sbjct: 310 -----------DEEPEVEDPPDPLKDTIG--------SIEFENVSFSYP----------- 339
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
K +L +S + PG A++G SG+GK+TL+ +L +G+I I G +
Sbjct: 340 -GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 926 TFA---RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ + G Q+ + F T+ E++ E+ + E + L
Sbjct: 397 SLDSLRKRIGIVSQDPLL--FSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLP 452
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
++VG GVN LS QR+RL IA L+ NP I+ +DE TS LD A++ ++
Sbjct: 453 DGYDTIVGERGVN-LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ GRT + H+ S + D + ++ G
Sbjct: 512 LK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 48/192 (25%), Positives = 82/192 (42%), Gaps = 18/192 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+ +L G+S G + G +G GKTTL+ +LAG R G + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ R Y P ++ E+L F++A + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHG--------GAQRTIEDALAAVGLTGF 120
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
LP LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 121 ED----LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA 175
Query: 1044 TGRTVVCTIHQP 1055
G V+ T HQ
Sbjct: 176 RGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 4e-13
Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 23/200 (11%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS------GY 933
RPG L+GV+GAGKTT +L G T +GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
C Q D +T E L+ A LR P IE+V ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
Query: 1054 QPSIDIFEAF-DELFLMKRG 1072
S++ EA L +M +G
Sbjct: 2129 --SMEECEALCTRLAIMVKG 2146
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 64/259 (24%), Positives = 104/259 (40%), Gaps = 42/259 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
LKDV+ + G + ++GP +GK+TLL +L G +DP+ SG + +NG + + +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I Q N + ++V E + T + S+ +KA
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY-TSTWRSLFGLFSKEDKAQA----- 128
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+D E ++ Y + A T+ SGGQ++RV +V
Sbjct: 129 -LDAL--------ERVGILDKAYQR-------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ DE LD + ++++ K I+ G VI L D II L
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLHQVDLAKKYADRIIGLK 222
Query: 400 DGQIVYQGP-RELVLEFFE 417
G+IV+ GP EL E +
Sbjct: 223 AGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-13
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 41/200 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
+L VS + PG +LGP SGK+TLL LAG LDP G VT +G ++D+
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + +Q D H+ + TVRE L A T E+ L R G+
Sbjct: 407 VRRRVSVCAQ-DAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWL---- 454
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
A +G DT++G E +SGG+++R+ ++ A
Sbjct: 455 ---RALPDG-------------------LDTVLG-EGGARLSGGERQRLALARALLADAP 491
Query: 344 ALFMDEISTGLDSSTTFQIV 363
L +DE + LD+ T +++
Sbjct: 492 ILLLDEPTEHLDAETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 26/202 (12%)
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIR-----ISGYPKKQETFARISGYCEQNDIH 940
++G +G+GK+ L++ +AG +G I I+ P ++ Y QN
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDI----SYVPQNYAL 82
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM---ELVELKPLRQSLVGLPGVNGLS 997
P +TVY+++ Y R + E + + I E++ L+ KP LS
Sbjct: 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LS 131
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+++R+ IA LV NP I+ +DEP S LD R + ++ V +
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 1058 DIFEAFDELFLMKRGGREVYVG 1079
+ + D++ +M G+ + VG
Sbjct: 192 EAWALADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-13
Identities = 66/251 (26%), Positives = 112/251 (44%), Gaps = 49/251 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L D++ +K G+LT L+G +GK+TLL L G L P+ G + NG ++ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ +++SQ+ ++ T+RE + A + + E + + P PD
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENILLA---RPDASD-EEIIAALDQAGLLEFVPKPD-- 444
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
GL DT++G E G+SGGQ +R+ ++ PA
Sbjct: 445 ------------------------GL----DTVIG-EGGAGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNI-HINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + LD+ T QI+ Q + + V+ ++ E D I++L +G
Sbjct: 476 SLLLLDEPTAHLDAETE-QII---LQALQELAKQKTVL-VITHRLEDAADADRIVVLDNG 530
Query: 402 QIVYQG-PREL 411
++V QG EL
Sbjct: 531 RLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 9e-13
Identities = 67/264 (25%), Positives = 106/264 (40%), Gaps = 55/264 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
LT + DVS V+PG + L+GP +GKTTL + G PS SG V + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R A I+ Q +TV E +A A + L R K
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHAR---LGLSGLLGRPRARKE-------- 122
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
+ A E L+ +GL AD G+ +S GQ++R+ E
Sbjct: 123 ----EREARERAREL-------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARA 163
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV------ISLLQPAPETYN 390
+ P L L +DE + GL+ T ++ + + G + + L+
Sbjct: 164 LATQPKL-LLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MG 215
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 216 LADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 68/257 (26%), Positives = 106/257 (41%), Gaps = 51/257 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L P SG VT NG ++ + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
A H + +LAF Q V ++ R +G +P
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREP-------- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM------V 339
EE I L L A R +SGG+++RV ++ V
Sbjct: 110 -------EEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
LF+DE ++ LD + T ++ G AV+++L D I+
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQL-----AREGGAVLAVLHDLNLAAQYADRIV 212
Query: 397 LLSDGQIVYQGPRELVL 413
LL G+++ G + VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 9e-13
Identities = 59/203 (29%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFA-RI 930
L+ V+ G L AL+G SG+GK+TL+ ++AG + +G IR++G + R
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRK 73
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
G+ Q+ +TV +++ + +R P K +EE++ELV+L+ L
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDR---Y 127
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR-TVV 1049
P N LS QR+R+ +A L P ++ +DEP LDA+ + +R D T V
Sbjct: 128 P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTV 185
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
H + E D + +M G
Sbjct: 186 FVTHDQE-EAMEVADRIVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 66/253 (26%), Positives = 106/253 (41%), Gaps = 49/253 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
LK+++ + PG ++GP +GK+TLL + ++PS SG + G ++ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R I QH N I +TV E + R T +L S +K
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDK-------- 123
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
+A S L+ +GL A D++ SGGQ++RV +
Sbjct: 124 -----ERALSA------------LERVGLADKAYQRA-DQL----SGGQQQRVAIARALA 161
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISL--LQPAPETYNLFDDI 395
P L L DE LD T+ Q+++ K I+ G T +I+L + A + D I
Sbjct: 162 QQPDLIL-ADEPIASLDPKTSKQVMDYLK-RINKEDGITVIINLHQVDLAKK---YADRI 216
Query: 396 ILLSDGQIVYQGP 408
+ L G+IV+ G
Sbjct: 217 VGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-12
Identities = 51/214 (23%), Positives = 78/214 (36%), Gaps = 48/214 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ +S + G +L GP SGKTTLL +AG L P +G + +G ++D+
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+ + +TV E L F A G + DI
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIA--- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
AA L+ +GL A G +S GQK+RV ++V
Sbjct: 110 -AA--------------LEAVGLAPLAHLPFGY-----LSAGQKRRVALARLLVSNRPIW 149
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE + LD++ + H+ G VI
Sbjct: 150 ILDEPTAALDAAAVALFAELIR--AHLAQGGIVI 181
|
Length = 207 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 77/304 (25%), Positives = 128/304 (42%), Gaps = 62/304 (20%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
P +KK L D+S + G T L+G SGK+T+ + G L P + ++T +G
Sbjct: 16 PDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73
Query: 219 MDEF----VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
+ + E+ DN TV + +AF + V R EM+
Sbjct: 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRPEMIK---------- 122
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT- 333
I D DV M + E AN+ SGGQK+RV
Sbjct: 123 IVRDVLADVGM-LDYIDSEPANL---------------------------SGGQKQRVAI 154
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
G + V P + + +DE ++ LD + QI+ ++ + + VIS+ E N+ D
Sbjct: 155 AGILAVEPKI-IILDESTSMLDPAGKEQILKLIRK-LKKKNNLTVISITHDIDEA-NMAD 211
Query: 394 DIILLSDGQIVYQG-PRELV--LEFFESMGFKCP---------KRKGVADFLQEVTSKKD 441
+++L DG+++ QG P E+ +E + +G P K KG++ QE+ +++
Sbjct: 212 QVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGIS-VPQEINTEEK 270
Query: 442 QEQY 445
QY
Sbjct: 271 LVQY 274
|
Length = 282 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 62/252 (24%), Positives = 103/252 (40%), Gaps = 53/252 (21%)
Query: 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL----DPSLKVSGRVTYN 215
S +K +L D++ + PG + +L GP SGKTT LL L G L + SLKV G+ Y
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQELYG 71
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ R YI Q N +G +T R+ + A E+ LS +E
Sbjct: 72 ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------ELQPNLSYQE----- 117
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR---RGVSGGQKKRV 332
+ + L+ +GL GD + +SGGQK+RV
Sbjct: 118 ---------ARERARA----------MLEAVGL--------GDHLDYYPHNLSGGQKQRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+V + DE + LDS + +V ++ G ++ ++ ++
Sbjct: 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVA 208
Query: 393 DDIILLSDGQIV 404
D I+ + DG+++
Sbjct: 209 DRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-12
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 36/216 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L ++ + +PG A++G +GAGKTTL+++L G I D I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 929 RISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ G Q F+ T+ E++ EEV+E +
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATD---EEVIEAAKEAGAHD 120
Query: 986 SLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 121 FIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQE 180
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + GRT + H+ S I A D++ ++ G
Sbjct: 181 ALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 29/220 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P K L G+S + + G A++G SG+GK+TL ++ G +G +R+ G KQ
Sbjct: 327 PGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQ 384
Query: 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
ETF + GY Q D+ TV E++ R + E +++E +L
Sbjct: 385 WDRETFGKHIGYLPQ-DVELFPGTVAENI-----ARFGENADPE-------KIIEAAKLA 431
Query: 982 PLRQSLVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ + ++ LP G G LS QR+R+ +A L +P ++ +DEP S LD
Sbjct: 432 GVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQ 491
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++ G TVV H+PS + D++ +++ G
Sbjct: 492 ALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 1e-12
Identities = 60/256 (23%), Positives = 97/256 (37%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+ L+ VS V+ G + LLG +GKTTLL + G + P SGR+ ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
P A AY+ + +TV E L A R + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEENLLLGA---------------YARRDKEAQERDL 116
Query: 280 DIDVFMKAASTEGEEANVITDYY--LKVLGLDICADTMVGDEMRR---GV-SGGQKKRVT 333
+ +V+ + + LK E R G SGG+++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+M P L L +DE S GL +I K+ + G ++ + Q A +
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSDGQIVYQGP 408
D +L +G+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-12
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQ 924
+ L+ VS G + ++G SGAGK+TL+ ++ R T G + D ++ + +
Sbjct: 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAE 77
Query: 925 -ETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ G Q N + S TV+E++ + P E+ + + V EL+EL
Sbjct: 78 LRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQRVAELLEL- 128
Query: 982 PLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVM 1035
VGL LS Q++R+ IA L NP I+ DE TS LD +I+
Sbjct: 129 ------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
+ G T+V H+ +++ + D + ++ +G
Sbjct: 183 LLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQG 218
|
Length = 339 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
LKD++ V G L ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R EK IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFDE----ERYEKV--IKACALEPD 109
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMM 338
+++ +G+ T +G+ +G+ SGGQK+R+
Sbjct: 110 LEIL-----PDGDL-------------------TEIGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC + +N+ T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYNLFDDIILLSDGQ 402
A D I++L +G+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 2e-12
Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+LKDVS +KPG ++GP SGK+TLL L DP+ SG + +G ++ + E
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDLDLES 73
Query: 226 --RTAAYISQHDNHIGEMTVRE 245
+ AY+ Q D + T+RE
Sbjct: 74 LRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 74/268 (27%), Positives = 114/268 (42%), Gaps = 37/268 (13%)
Query: 816 RNSSSSLTEAEASHP-KKRGMVLPFEPYS-LTFDEVVYSVDMPQQMKLQGVPEDKLVLLN 873
R S L E A P M LP P L+ + + P K +L
Sbjct: 306 RQSYKRLNELLAELPAAAERMPLP-APQGALSVERLTA-----------APPGQKKPILK 353
Query: 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARI 930
G+S A + G ++G SG+GK+TL +L G +G +R+ G +Q E R
Sbjct: 354 GISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRH 411
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE-----EVMELVELKPL-R 984
GY Q D+ T+ E++ R E + E IE V EL+ P
Sbjct: 412 IGYLPQ-DVELFDGTIAENI-----ARFGEEADPEK---VIEAARLAGVHELILRLPQGY 462
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ +G G LS QR+R+ +A L +P ++ +DEP S LD+ A + +
Sbjct: 463 DTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G TVV H+PS + D++ +++ G
Sbjct: 522 GGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L VS G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G Q+ P TVYE++ LP V + + V E+++L L+
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENV------ALPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
LP + LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1048 VVCTIH 1053
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 929 RISGYCE--QNDIHSPFVTVYE----------SLFYSAWLRLPPEVNSETRKMFIEEVME 976
R +G Q +TV+E S+F S + RL E IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 3e-12
Identities = 74/276 (26%), Positives = 115/276 (41%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T + D+S +K G LLGP GKTTLL +AG PS SG + +G ++ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
R + Q H MTV E +AF + + ++ K A IK
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLK-------------VRKKLKKAEIK-- 114
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338
EEA L+++GL+ AD +SGGQ++RV +
Sbjct: 115 -----------ARVEEA-------LELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
V L +DE + LD+ Q+ K+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 64/265 (24%), Positives = 104/265 (39%), Gaps = 71/265 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHN---MDE 221
LKD+S + G +T L+GP GK+TLL L L P G V +G + +D
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R + A
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR-----GVSGGQKKRVTT 334
L+ L DE++ G+SGGQ++R+
Sbjct: 124 -----------------------LRKAALW--------DEVKDRLHALGLSGGQQQRLCL 152
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVI---SLLQPAPE 387
+ P + L +DE ++ LD +T +I + K+ T VI ++ Q A
Sbjct: 153 ARALANEPEV-LLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIVTHNMQQAA-- 204
Query: 388 TYNLFDDIILLSDGQIVYQGPRELV 412
+ D L +G++V GP E +
Sbjct: 205 --RVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-12
Identities = 64/277 (23%), Positives = 100/277 (36%), Gaps = 77/277 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL V V G + +LG SGK+TLL + G L P G + +G ++ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ Q +TV E +AF T+L
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF---------PLREHTKLPESLIR------- 122
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
++ V MK L+++GL D +SGG +KRV
Sbjct: 123 EL-VLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV------- 154
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPAPET 388
ALA LF+DE ++GLD + I + +N G VI +
Sbjct: 155 --ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLDSL 209
Query: 389 YNLFDDIILLSDGQIVYQGPRE--------LVLEFFE 417
+ D + +L+DG+++ +G E V +FF
Sbjct: 210 LTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 64/248 (25%), Positives = 101/248 (40%), Gaps = 45/248 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
L DV+ V G L LLGP SGK+TLL +AG P SGR+ NG +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R ++ QH +TVR+ +AF E+ + KA
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFG-------------LEIRKHPKAK----------- 106
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
+KA E L+++ L +GD +SGGQ++RV +
Sbjct: 107 IKARVEE----------LLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE LD+ ++ + ++ T V + E + D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKIE 210
Query: 405 YQG-PREL 411
G P E+
Sbjct: 211 QIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-12
Identities = 62/201 (30%), Positives = 90/201 (44%), Gaps = 26/201 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIT-GDIRISGYP--KKQ 924
+L+G+ +PG + A++G SG+GKTTL+ L + G I GDI I +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 925 ETFARI----SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ R G+ QN P TV E++ + P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENI-----IEGPVIVKGEPKEEATARARELL-- 129
Query: 981 KPLRQSLVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1036 RTVRNTVDTGRTVVCTIHQPS 1056
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 3e-12
Identities = 66/209 (31%), Positives = 100/209 (47%), Gaps = 20/209 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK-QETFARI 930
L+ +S R G + ALMG +GAGK+TL+ +L+G G I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 931 -SG----YCEQNDIH-SPFVTVYESLFYSAWL-RLPPEVNSETRKMFIEEVMELVELKPL 983
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
GR ++ H+ +IF D + + K G
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 18/208 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI-----SGYPKKQET 926
L ++ PG + L G SG+GKTTL+ ++ G ++ G +++ G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R + GY Q F+T +++ + L L P ++ + + ++E V L
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLG---D 133
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1044
L P + LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 134 HLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G T++ H I + D + M+ G
Sbjct: 192 GCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 24/209 (11%)
Query: 860 KLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919
K G E +L +L GV + G A++G SG+GK+TL+ VLAG +G++R+ G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 920 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
P ++ A + G+ Q+ P +T E+ + LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALEN------VALPLELRGESSADSRA 125
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1028
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+ A ++ R + G T+V H P +
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 34/205 (16%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYP--- 921
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME----- 976
R G Q E++ ++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 977 -----LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPS 1056
+MR + + GRTV+ H+ S
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 22/212 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKKQET 926
+LN +S + G +TAL+G +G GK+TL+ A R ++G GD IS +Q
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ-- 73
Query: 927 FARISGYCEQNDIHSPFVTVYESLFY--SAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
AR Q+ + +TV E + Y S WL L +++E + + ME + L
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNAR-VNQAMEQTRINHLA 132
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 133 DRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ 187
Query: 1045 GRTVVCTIHQPSIDIFEA---FDELFLMKRGG 1073
G+TVV +H D+ +A D L ++ G
Sbjct: 188 GKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-12
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 896 TTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY 952
+TL+ ++ G + T G I D +G ++ RI G Q+ P +TV E+LF+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRI-GVVFQDPQLFPELTVRENLFF 59
Query: 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012
+ EE +E V L V LS Q++R+ IA L+
Sbjct: 60 GL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALLK 107
Query: 1013 NPSIIFMDEPTS 1024
P ++ +DEPT+
Sbjct: 108 KPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 5e-12
Identities = 66/258 (25%), Positives = 114/258 (44%), Gaps = 61/258 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS ++PG ++G SGK+TLL L G P+ G V +G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R Y+ Q D + T+R+ +A A P D +
Sbjct: 538 RRNIGYVPQ-DPRLFYGTLRDNIALGA-------------------------PYADDEEI 571
Query: 285 MKAASTEGEEANVITDYY-LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PA 342
++AA G +T++ GLD +G E R +SGGQ++ V ++ P
Sbjct: 572 LRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDPP 621
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDII 396
+ L +DE ++ +D+ + + + K+ + +G ++ SLL L D II
Sbjct: 622 I-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTLVLVTHRTSLLD-------LVDRII 670
Query: 397 LLSDGQIVYQGPRELVLE 414
++ +G+IV GP++ VLE
Sbjct: 671 VMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 55/192 (28%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-----YPKKQET 926
L+ VS R G L G SGAGKTTL+ +L G T G +RI+G +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q+ P TVYE++ +R E + R + + V L+
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEH--- 129
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1046 RTVVCTIHQPSI 1057
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 34/214 (15%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY-P-KKQETFARISGYCEQ 936
G + +G +GAGK+T + +L G T G + R++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 937 NDIHSPFVTVYESLFYSAWLRLPPEVNSETR----KMFIEEVMELVEL----KPLRQSLV 988
+ L++ EV F E + L E+ L+
Sbjct: 103 -------MGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWP-- 153
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1047
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ + T
Sbjct: 154 ----VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQAT 209
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
V+ T H DI D + L+ + G+ V+ G L
Sbjct: 210 VLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 7e-12
Identities = 65/252 (25%), Positives = 106/252 (42%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S + PG ++G SGK+TLL L G P GR+ +G ++++
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R Y+ Q D + ++RE +A P+ +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G ++ + L + DT VG E +SGGQ++R+ ++
Sbjct: 579 IIEAAQLAG-----AHEF---IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKPK 629
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE ++ LD T I QN+ I G VI ++ T D II+L G+
Sbjct: 630 ILLLDEATSALDPETEAII----LQNLLQILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-12
Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 16/217 (7%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ET 926
LL+ +S F G +T L+G +G+GK+TL+ +L GR G+I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 927 FARISGYCEQNDIHSPFVTVYE--SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
FAR Y Q + +TV E ++ W + R+ +EE + LV LKPL
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREK-VEEAISLVGLKPLA 141
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVD 1043
LV + LS +R+R IA+ + + + +DEPTS LD V+ V R + +
Sbjct: 142 HRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQE 196
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G TV+ +H I++ + + + RGG + G
Sbjct: 197 RGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+DVS VKPG ++GP +GK+TLL A+ G L P+ SG + G +++
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + G+ + LS+ +KA
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKADKAK---------- 112
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+EA L+ +GL AD +G E+ SGGQ++RV +V
Sbjct: 113 --------VDEA-------LERVGLSELADRQIG-EL----SGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL--LQPAPETYNLFDDIILLSDG 401
L +DE G+D T I ++ + T ++ L E FD ++LL +
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVLE---YFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 52/202 (25%), Positives = 76/202 (37%), Gaps = 49/202 (24%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
+I S KK IL D+S + G + L G +GKTTL LAG + S SG + N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLN 60
Query: 216 GHNMDEFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
G + ++ Y+ Q D + +VRE L
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------------------ 96
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTT 334
+K E+A + LK L L + +SGGQK+R+
Sbjct: 97 ----------LKELDAGNEQAETV----LKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 335 G-EMMVGPALALFMDEISTGLD 355
++ G L L DE ++GLD
Sbjct: 138 AAALLSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 57/249 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP--- 224
L +VS ++ G ++G SGK+TLL LAG P+ SG V +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R Y+ Q D + T+R+ + A P D +
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA-------------------------PLADDERI 110
Query: 285 MKAASTEGEEANVITDYYLK-VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G +TD+ K GL D +G E RG+SGGQ++ V ++
Sbjct: 111 LRAAELAG-----VTDFVNKHPNGL----DLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILL 398
L +DE ++ +D ++ ++ +Q + T +I SLL L D II++
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLLD-------LVDRIIVM 211
Query: 399 SDGQIVYQG 407
G+IV G
Sbjct: 212 DSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 61/219 (27%), Positives = 95/219 (43%), Gaps = 27/219 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS G + AL+G +GAGKTTL+ + G R G I I+G P
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP----PHE 74
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R Y + P +TV E+L A+ R + E ++ +EEV EL LK R
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKERR 130
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 131 NQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185
Query: 1045 GRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
G + + Q + A D ++++ GR V G
Sbjct: 186 GGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 56/217 (25%), Positives = 94/217 (43%), Gaps = 36/217 (16%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKK 923
+L VS G A++G SG+GK+T++ DV +G I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 924 ---QETFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
++ R G Q ND T+ ++ Y EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R V GRT + H+ S I A D++ ++K G
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-11
Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
D L G++ G + AL+G +GAGK+TL G + T G + Y KK
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKS 72
Query: 925 ETFARIS-GYCEQN---DIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEV-MELV 978
R + G QN + +P TV E + F L L E + K ++ V ME
Sbjct: 73 LLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF 130
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
E KP LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ +
Sbjct: 131 ENKPPHH----------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLL 180
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAF-DELFLMKRG 1072
+ G T++ + H +D+ + D++++M G
Sbjct: 181 YDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 51/166 (30%), Positives = 78/166 (46%), Gaps = 15/166 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
V L+GVS + G L+G SG GKTTL+ ++AG T G I I+ P
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLP-- 68
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R QN P +TV+E++ + LRL ++ K + E ++LV+L+
Sbjct: 69 --PHKRPVNTVFQNYALFPHLTVFENIAFG--LRL-KKLPKAEIKERVAEALDLVQLEGY 123
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 124 ANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-S 380
RG+S Q+KR+T G + LF+DE ++GLDS + IV F + + +SG A++ +
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV-RFLKKL-ADSGQAILCT 164
Query: 381 LLQPAPETYNLFDDIILL-SDGQIVYQG 407
+ QP+ + FD ++LL G+ VY G
Sbjct: 165 IHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 2e-11
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
T L D+S V+ G + LLGP +GKTTL+ + G L P SG + G ++ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 223 VPE--RTAAYISQHDNHIGEMTVRETLAF 249
E R Y+ + + +TVRE L
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 65/259 (25%), Positives = 99/259 (38%), Gaps = 68/259 (26%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG----H 217
KK + + VS VKPG +T LLGP +GKTT L LAG L+P +G T +G
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 218 NMDE------FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
E FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLGFVSDSTGLY--------DRLTARENLEYFAGLYGL--------------- 108
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
+G+E + LG++ D VG G S G +++
Sbjct: 109 -------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144
Query: 332 VTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
V +V L +DE +TGLD + + + + G ++ E
Sbjct: 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQEV 199
Query: 389 YNLFDDIILLSDGQIVYQG 407
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L+ VS V PG L+GP +GK+TLL L G +DP+ G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A++ QH + T+ E + A + + E+ + AG+
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRLA---RPDASD----AEIREALERAGL--------- 437
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
D ++ L + DT +G+ G+SGGQ +R+ + A
Sbjct: 438 ---------------DEFVAALPQGL--DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGDIRISGYPKKQETFA 928
L+ VS + G + +G +GAGK+T M ++ G Y+ +G +++ G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 929 --RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKPL 983
R GY + H+P +Y ++ +L+ + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPE 126
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ +G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 52/207 (25%), Positives = 100/207 (48%), Gaps = 14/207 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
++ +S PG + L+G +GAGKTT ++ G G+I +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 932 GYC-EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
GY E+ ++ P +TV + L Y A L+ P+ + + ++ +E +E+ + +
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-- 128
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
LS ++++ ++ P ++ +DEP SGLD ++ + + G T++
Sbjct: 129 ---KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIF 185
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVY 1077
+ H+ + E D L ++K+G +Y
Sbjct: 186 SSHRME-HVEELCDRLLMLKKGQTVLY 211
|
Length = 300 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 63/232 (27%), Positives = 94/232 (40%), Gaps = 49/232 (21%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQET- 926
+N ++ G L+G SG+GKTT M + I G+I I G +++
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDP 70
Query: 927 --FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R GY Q P +TV E++ L P++ ++ E EL+ L
Sbjct: 71 VELRRKIGYVIQQIGLFPHMTVEENI------ALVPKLLKWPKEKIRERADELLAL---- 120
Query: 985 QSLVGLPGVN-------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
VGL LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 121 ---VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRD 172
Query: 1038 ------VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
R + G+T+V H DI EAF D + +MK G P
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTP 220
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 16/153 (10%)
Query: 881 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQ-ETFARISGYC 934
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
Q P ++V +L Y P E R++ E V+EL+ + L L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHLLGRLPG----- 130
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-11
Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+T L+D+S V+ G L+GP GK+TLL +AG P+ SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
+ P Y+ Q D + +TV + +A QGV RE+A
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA-------EARERAEE---- 114
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV----TT 334
L+++GL + +SGG ++RV
Sbjct: 115 -----------------------LLELVGLSGFENAYPHQ-----LSGGMRQRVALARA- 145
Query: 335 GEMMVGPALALFMDE 349
+ V P + L +DE
Sbjct: 146 --LAVDPDV-LLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 56/167 (33%), Positives = 82/167 (49%), Gaps = 27/167 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQETFA 928
L +S + + G L+G SG GKTTL+ ++AG R+T G I R I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSL 987
G Q+ P +TV +++ Y + R M EV E V EL L
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAEL----LDL 121
Query: 988 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 122 VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP- 921
G E +L +L GV + G AL+G SG+GK+TL+ +LAG G +G++ + G P
Sbjct: 17 GQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQPL 74
Query: 922 ------KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
+ + A+ G+ Q+ + P + E++ A LR E + ++R
Sbjct: 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGAK 128
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L+E L + L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 3e-11
Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 18/179 (10%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQND-IH 940
G + AL+GV+G+GK+TL L G +G I I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 941 SPFVTVYESLF------YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
F + E + + WLR + + + + + V++ R +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 14/159 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
L VS G L ++G SG GKTTL++++AG T G I+++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVG 989
G QN+ P++ V +++ + LR + R+ +++ LV L+ + +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYIWQ 132
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
L G R+R+ IA L P ++ +DEP LDA
Sbjct: 133 LSG------GMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 58/188 (30%), Positives = 97/188 (51%), Gaps = 16/188 (8%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK-KQETFA 928
V++N +S G L+G +GAGK+T+ +L G + G I + G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 929 RIS-GYCEQNDIHSPFVTVYESLF-YSAWLRLPPEVNSETRKMFIEEVM-ELVELKPLRQ 985
R++ G Q D P TV E+L + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-E 126
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S + V LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1046 RTVVCTIH 1053
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 3e-11
Identities = 64/222 (28%), Positives = 94/222 (42%), Gaps = 40/222 (18%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGY-------PKKQE 925
VS PG + ++G SG+GKTTL+ ++GR G +T +R ++
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 926 TFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFI------------E 972
R G+ QN + V SA N R M I +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQV------SA------GGNIGERLMAIGARHYGNIRAEAQ 132
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ +E VE+ R + LP S ++RL IA LV P ++FMDEPT GLD A
Sbjct: 133 DWLEEVEIDLDR--IDDLP--RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 1033 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++ +R V + G VV H ++ A D L +MK+G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 60/263 (22%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
++ + ILK +S + PG+ L+G GK+T++ L DP+ SG + +G ++
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIR 68
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ +SQ + + + T+ E + + KP
Sbjct: 69 DLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG-------------------------KP 102
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTG 335
D + +AA ++AN I D+ ++ L DT+VG+ RG SGGQK+R+
Sbjct: 103 DATDEEVEEAA----KKAN-IHDF---IMSLPDGYDTLVGE---RGSQLSGGQKQRIAIA 151
Query: 336 EMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYN 390
++ P + L +DE ++ LD+ + + T VI S ++ A
Sbjct: 152 RALLRNPKI-LLLDEATSALDAESEKLVQEAL-DRAMKGRTTIVIAHRLSTIRNA----- 204
Query: 391 LFDDIILLSDGQIVYQG-PRELV 412
D I +L +GQ+V QG EL+
Sbjct: 205 --DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 64/251 (25%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEF 222
I+ V PG LT LLGP SGK+TLL LAG L P +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R A + Q + +TVR+ +A L + R AG D D
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVA--------------LGRIPHRSLWAG---DSPHD 114
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ D L L AD + +SGG+++RV +
Sbjct: 115 A-------------AVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + LD + + ++ +G V++ L + D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRE--LAATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 5e-11
Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 46/235 (19%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGH-NMDEFVPERTAAYIS 232
+T + G +GK+TLL +AG P + ++G V ++ ++ +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEIST 352
L +LGLD + +SGG+K+RV + L +DE +
Sbjct: 116 ----------LDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLLDEPFS 160
Query: 353 GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
LD + Q++ KQ I N VI + E L D I+++ DG++ Y G
Sbjct: 161 ALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 5e-11
Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 19/164 (11%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGDIRISGYPKKQ 924
LL V+ G + LMG SG GK+TL+ + G TG + R+ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R G Q+ + P ++V ++L ++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
P LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DPAT--LSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 5e-11
Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 30/221 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRD 68
Query: 925 ETFA---RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
T A R G Q D+ TV E++ Y P TR EEV E
Sbjct: 69 YTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PG---ATR----EEVEEAARAA 115
Query: 982 PLRQSLVGLP-------GVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ ++ LP G G LS QR+R+ IA L+ +P I+ +DE TS LD +
Sbjct: 116 NAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
+V + + RT H+ S I A D + +++ G
Sbjct: 176 LVQAALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 6e-11
Identities = 56/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG---YPKKQ 924
++GVS + G + ++G SG+GK+ L + G K I G+I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 925 ETFARISG----YCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ +I G Q+ + S P +T+ + + L E ++ E++ELV
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKER-AIELLELV 138
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ + L P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ +
Sbjct: 139 GIPDPERRLKSYP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLL 196
Query: 1039 RNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + G ++ H + + E D + +M GR V GP
Sbjct: 197 KELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-11
Identities = 60/241 (24%), Positives = 99/241 (41%), Gaps = 46/241 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
T L D++ + G +LLGP GKTT L +AG +P+ SGR+ G ++ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR-EKAAGIKPDPDIDV 283
+R A + Q+ MTV + +AF + + V E+ R + A
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKD-----EIDERVREVA---------- 115
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++L ++ + D + +SGGQ++RV G +V
Sbjct: 116 --------------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPK 150
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
MDE + LD+ Q+ K + GT I + E + D I +++DGQI
Sbjct: 151 VFLMDEPLSNLDAKLRVQMRAELK-RLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
Query: 404 V 404
Sbjct: 210 Q 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 8e-11
Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 16/188 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+N VS G + L+G +GAGKTT ++ G R G I D I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 929 RIS-GYCEQNDIHSPF--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ GY Q S F +TV +++ +R +E RK ++ ++E + LR
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRD 134
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
S + LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D G
Sbjct: 135 S----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRG 189
Query: 1046 RTVVCTIH 1053
V+ T H
Sbjct: 190 IGVLITDH 197
|
Length = 243 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 9e-11
Identities = 68/279 (24%), Positives = 103/279 (36%), Gaps = 96/279 (34%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L P SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VFMKAA--STEGEEANVITDYYLKVLGLDICADTMVGDEMR--RGVSGGQKKRVTTGEMM 338
V M A E + + L + L A R +SGG+++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDLAHLAG-------RDYPQLSGGEQQRV------ 143
Query: 339 VGPALA---------------LFMDEISTGLDSS---TTFQIV-NCFKQNIHINSGTAVI 379
LA L +DE ++ LD + ++ + G AVI
Sbjct: 144 ---QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVI 195
Query: 380 SLL----QPAPETYNLF-DDIILLSDGQIVYQGPRELVL 413
+L A + D I+LL G++V G VL
Sbjct: 196 VVLHDLNLAA-----RYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 68/209 (32%), Positives = 98/209 (46%), Gaps = 42/209 (20%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYITGDIRISG---YPK 922
LN VS F P +TAL+G SG+GK+TL M+ L T ITG I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 923 KQETF---ARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ +T I +Q + PF +++YE++ Y LRL K ++E +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRL----KGIKDKQVLDEAVEKS 128
Query: 979 --------ELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD
Sbjct: 129 LKGASIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 1030 AAAIVMRTVRNTVD--TGRTVVCTIHQPS 1056
+A + T+ D T V ++ Q S
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 9e-11
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 13/206 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L G++ F +T L+G +G GK+TL L+G R G + + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R Q+ F T +S + L TR+ ++E + LV+ + R
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1048 VVCTIHQPSID-IFEAFDELFLMKRG 1072
V+ + H ID I+E D ++++++G
Sbjct: 189 VIISSH--DIDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 71/270 (26%), Positives = 112/270 (41%), Gaps = 69/270 (25%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP 224
++DVS V+PG + ++G SGK+TL LAL G L ++ SG V +G ++
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 225 E-------RTAAYISQHDNHI--GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ A I Q MT+ + + A R G G+R E R++A
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAE------ARKRAV-- 134
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
L+ +GL D D +SGG ++RV
Sbjct: 135 -------------------------ELLEQVGLP---DPERRDRYPHQLSGGMRQRV--- 163
Query: 336 EMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390
M+ ALA L DE +T LD +T QI++ K ++ G AV+ + T++
Sbjct: 164 --MIAMALALKPKLLIADEPTTALDVTTQAQILDLLK-DLQRELGMAVLFI------THD 214
Query: 391 L------FDDIILLSDGQIVYQGPRELVLE 414
L D ++++ G+IV GP E +L
Sbjct: 215 LGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 29/163 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
+N +S + L+G +GAGK+TL+ ++ G R T +G+I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPLR 984
I E ++ +T E+L L P+ S I+EV+ +V+L K +
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLPD--SR-----IDEVLNIVDLTNTGKKKAK 123
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
Q +G+ ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 124 QFSLGM----------KQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 24/198 (12%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY 920
D L +G+S G + G +G+GKTTL+ +LAG G + ++G
Sbjct: 7 TCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRVLLNGG 62
Query: 921 PKKQE--TFARISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMEL 977
P + + AR Y ++V E+L F+ A +S+ + +EE +
Sbjct: 63 PLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHA-------DHSDEQ---VEEALAR 112
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V L P V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 113 VGLNGFED----RP-VAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEA 167
Query: 1038 VRNTVDTGRTVVCTIHQP 1055
+ G VV T HQ
Sbjct: 168 MAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 56/220 (25%), Positives = 92/220 (41%), Gaps = 21/220 (9%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT--GDIRISGYPKKQET 926
+L +S PG A++G +GAGKTTL+ +L G + G +T G G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-ETIFEL 104
Query: 927 FARISGYC--EQNDIHSPFVTVYESLFYSAW---LRLPPEVNSETRKMFIEEVMELVELK 981
RI G E ++ TV + + S + + + E + + ++EL+ K
Sbjct: 105 RKRI-GLVSSELHERFRVRETVRDVV-LSGFFASIGIYQEDLTAEDLAAAQWLLELLGAK 162
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR-- 1039
L G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 163 HLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL 217
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
++ H +I F L+K G V G
Sbjct: 218 AASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-10
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 4/96 (4%)
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ EL + VG G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 576 ISELPQGYNTEVGEKGAN-LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+R + GRTV+ H+ + A D + ++++G
Sbjct: 635 NMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 64/254 (25%), Positives = 100/254 (39%), Gaps = 61/254 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L DVS V+PGR LLGP +GK+TL L G+++ GH++ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A + Q +++VR+ L + A G LSR E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPAL 343
L LGL AD V R ++GG ++RV ++ PAL
Sbjct: 117 ------------------LARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVN-----CFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
L +DE + GLD ++ I Q + + T ++ ++ D +++L
Sbjct: 154 -LLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD-------DRLVVL 205
Query: 399 SDGQIVYQG-PREL 411
G+++ G EL
Sbjct: 206 HRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-R 226
LK+VS V+ G ++LGP SGK+ LL +AG + P SG++ NG ++ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+Y+ Q+ MTV + +A+ + + V ++E +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKV----------DKKEIERKVL---------- 111
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
E A ++LG+D + + +SGG+++RV +V L
Sbjct: 112 ------EIA--------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQ 406
+DE + LD T ++ K+ I G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+L+D+S + G L+GP SGK+TL+ + D SGR+ +GH++ ++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD---SGRILIDGHDVRDYTLAS 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R +SQ D + TV E +A+ +P +
Sbjct: 74 LRRQIGLVSQ-DVFLFNDTVAENIAYG-------------------------RPGATREE 107
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
+AA AN ++ ++ L DT++G+ RGV SGGQ++R+ ++
Sbjct: 108 VEEAA----RAANA-HEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIARALLKD 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIIL 397
L +DE ++ LD+ + + + + N T VI S ++ A D I++
Sbjct: 157 PPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIAHRLSTIENA-------DRIVV 208
Query: 398 LSDGQIVYQG 407
L DG+IV +G
Sbjct: 209 LEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 53/212 (25%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 856 PQQMKLQGV----PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI 911
Q ++L+ V P + L + G A++G SG+GK+TL+ +LAG
Sbjct: 334 GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQ 391
Query: 912 TGDIRISGYP----KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR 967
G I ++G +Q IS ++ + S T+ ++L + P+ + E
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE- 443
Query: 968 KMFIEEVMELVEL-KPLRQSLVGLP-----GVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021
+ ++ V L K L + GL G LS +R+RL +A L+ + + +DE
Sbjct: 444 ---LWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDE 500
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
PT GLD V+ + + G+T++ H
Sbjct: 501 PTEGLDPITERQVLALLFEHAE-GKTLLMVTH 531
|
Length = 573 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 49/182 (26%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L ++ +TAL+G SG GK+TL+ D++ G + + G++ + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 922 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
K + R+ G Q N PF ++Y+++ Y LRL + E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 976 ELVELKPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
E+VE L++ L GLS Q++RL IA L P ++ MDEPTS
Sbjct: 124 EIVE-SSLKK--AALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAVKPEVLLMDEPTSA 179
Query: 1026 LD 1027
LD
Sbjct: 180 LD 181
|
Length = 253 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 62/211 (29%), Positives = 99/211 (46%), Gaps = 26/211 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
L+ S +PG AL+G SG+GK+T+ ++AG + G +I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 929 RISG---YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSE--TRKMFIEEVMELVELKPL 983
++ +Q DI TV ++L + W P+ + + I +V +
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--ITSRPGG 604
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ +R
Sbjct: 605 YDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--- 660
Query: 1044 TGRTVVCTI--HQPSIDIFEAFDELFLMKRG 1072
R C I H+ S I + DE+ +++RG
Sbjct: 661 --RGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 53/194 (27%), Positives = 78/194 (40%), Gaps = 51/194 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH----NMDEF 222
L VS + PG + LLGP +GKTTL+ LA PS SG + +G +
Sbjct: 15 ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKL 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R Y+ Q TVRE L + A +G+ S+ KA
Sbjct: 71 --RRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIP---------SKEVKAR--------- 110
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-P 341
D L+++ L A +G +SGG ++RV + +VG P
Sbjct: 111 ----------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVGDP 149
Query: 342 ALALFMDEISTGLD 355
++ L +DE + GLD
Sbjct: 150 SI-LIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 24/210 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
L GVS G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 929 RIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLR 984
R Y Q P +TV E+L ++ + + EL P+
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENL----------LTGLAALPRRSRKIPDEIYELFPVL 121
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ ++G G + LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE 180
Query: 1045 GRTVVCTIHQPSIDI-FEAFDELFLMKRGG 1073
G + + Q +D E D ++M+RG
Sbjct: 181 GGMAILLVEQ-YLDFARELADRYYVMERGR 209
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 887 LMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPF 943
L+G SG GKTT + ++AG T G I G ++ P K A + QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVF----QNYALYPH 86
Query: 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003
+TVY+++ + LR P+ + R + EV EL++++ L LS QR+R
Sbjct: 87 MTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQR 138
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDAR 1029
+ + +V P + MDEP S LDA+
Sbjct: 139 VALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (149), Expect = 4e-10
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 26/225 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD-IRISGYPKKQETFARI 930
L+ V G + AL+G SG+GK+TL+ L+G TG G I + G ++E R+
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRL 77
Query: 931 SGYCEQNDIHSPFV----------TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ ++ ++ ++ +V E++ A P T + + L
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTP---FWRTCFSWFTREQKQRAL 134
Query: 981 KPLRQSLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ L + VG+ V+ LS Q++R+ IA L+ +I DEP + LD +A IVM
Sbjct: 135 QALTR--VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVM 192
Query: 1036 RTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
T+R+ G TVV T+HQ +D + E + R G Y G
Sbjct: 193 DTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 4e-10
Identities = 59/216 (27%), Positives = 92/216 (42%), Gaps = 35/216 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQE--- 925
++ V+ G L+G SG+GKTT + + I G+I I G
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPV 71
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKP 982
R GY Q P +TV E++ P+ + E K +E+++LV L P
Sbjct: 72 ELRRKIGYVIQQIGLFPHLTVAENI------ATVPKLLGWDKERIKKRADELLDLVGLDP 125
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVR 1039
+ P + LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 126 -SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQ 182
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
G+T+V H DI EA D + +M G
Sbjct: 183 KE--LGKTIVFVTH----DIDEALKLADRIAVMDAG 212
|
Length = 309 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-10
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 39/199 (19%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQET 926
+V + VS + + G + AL+G +GAGK+TLM +L G + G+IR+ G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDS----GEIRVDGKE----- 67
Query: 927 FARISGYCEQND--------IHSPFV-----TVYESLFYSAWLRLPPEVN-SETRKMFIE 972
RI D +H F+ TV E++ ++ + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 973 EVMEL--VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
E+ E + + P + V LS +++R+ I L ++ +DEPT+ L +
Sbjct: 123 ELSERYGLPVDPDAK-------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQE 175
Query: 1031 AAIVMRTVRNTVDTGRTVV 1049
A + +R G+T++
Sbjct: 176 ADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 5e-10
Identities = 54/213 (25%), Positives = 97/213 (45%), Gaps = 18/213 (8%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETF 927
+L GVS + G + A++G SG+GK+TL+ +L G +G++ +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 928 ARISGYCEQNDIHSPFVTVYESLF--YSAW--LRLPPEVNSETRKMFIEEVMELVELKPL 983
+ + + F+ + L ++A + +P + ++ K E E++E L
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGL 131
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---MRTVRN 1040
+ P LS +R+R+ IA LV PS++ DEPT LD A I+ M +
Sbjct: 132 EHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR 189
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++T VV H ++ + D + MK G
Sbjct: 190 ELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 20/152 (13%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA---RISGYCE 935
G+ TAL G SG+GKT+L++++AG R G I + R+ +K R GY
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVF 82
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q+ P TV +L Y W ++ + ++++ L+ ++ L L PG
Sbjct: 83 QDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LDRYPGT-- 128
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 6e-10
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 18/215 (8%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVL--AGRKTGGYITGDIR-ISGYPK 922
+ VS PG + ++G SG+GK+T LM +L GR T G + D R + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 923 KQET--FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
++ + Q+ + S P +T+ + + + L +E RK E++E V
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSR-AEARKR-AVELLEQV 140
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L P + P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ +
Sbjct: 141 GL-PDPERRDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLL 197
Query: 1039 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + G V+ H + + E D + +M +G
Sbjct: 198 KDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 6e-10
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 12/206 (5%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFA 928
+L+ +S G L AL+G SG GKTTL+ +AG +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R QN P + V +++ + + P+ + R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1046
LP LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T++C H D D+ +MK G
Sbjct: 191 TILCVTHDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 7e-10
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +VS +K G + L+GP SGK+TLL A+AG L P+ SG + +G ++ + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLE 69
Query: 226 ---RTAAYISQ 233
R Y+ Q
Sbjct: 70 ELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 53/217 (24%), Positives = 72/217 (33%), Gaps = 51/217 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L P +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
Y+ E+T E L F AA I
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF-------------WQRFHGSGNAATI------- 111
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
EA L +GL D VG +S GQ++RV + + PA
Sbjct: 112 ----------WEA-------LAQVGLAGLEDLPVGQ-----LSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE T LD + H G V+
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184
|
Length = 209 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 7e-10
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
EDK +L GV+ + G + A+MG +G+GK+TL +AG + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 926 TFARISGYCEQNDIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFI---------- 971
+ E LF + + P E+ + F+
Sbjct: 66 LLE---------------LEPDERARAGLFLA--FQYPEEIPGVSNLEFLRSALNARRSA 108
Query: 972 --EEVMELVELKPLRQ---SLVGLP------GVN-GLSTEQRKRLTIAVELVANPSIIFM 1019
EE ++L++ L + +L+G+ VN G S ++KR I + P + +
Sbjct: 109 RGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
DE SGLD A IV + + R+ + H +
Sbjct: 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 7e-10
Identities = 63/292 (21%), Positives = 114/292 (39%), Gaps = 87/292 (29%)
Query: 155 LHI-LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGR 211
L + P+ + + VS +K G + ++G SGK+ L A+ G L + V G
Sbjct: 7 LSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 212 VTYNGHNMDEFVPERTA-------AYISQHD-----NHIGEMTVRETLAFAARCQGVGTR 259
+ ++G ++ + A I Q D N + MT+ + +A R
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQ-DPMTSLNPV--MTIGDQIAEVLR-----LH 118
Query: 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319
+ L++ +E+A L+++G+ D
Sbjct: 119 GKGLSKKEAKERAI---------------------------ELLELVGIP--------DP 143
Query: 320 MRRG------VSGGQKKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ 368
RR +SGG ++RV M+ ALA L DE +T LD + QI++ K+
Sbjct: 144 ERRLKSYPHELSGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE 198
Query: 369 NIHINSGTAVI------SLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
+ GTA+I ++ + D + ++ G+IV +GP E + +
Sbjct: 199 -LQREKGTALILITHDLGVV------AEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-10
Identities = 65/218 (29%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L V+ PG + AL+G +GAGK+TLM VL+G T G IT I Y K A
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTIT--INNINYNKLDHKLAA 78
Query: 930 ISG----YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
G Y E + I +TV E+L+ R T+K+ +++ E++
Sbjct: 79 QLGIGIIYQELSVIDE--LTVLENLYIG---RHL------TKKVCGVNIIDWREMRVRAA 127
Query: 986 SL---VGL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA---IV 1034
+ VGL V LS ++ L IA L+ + +I MDEPTS L + ++
Sbjct: 128 MMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLI 187
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
M +R G +V H+ + +I D +MK G
Sbjct: 188 MNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 32/190 (16%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIT-GDIRISG 919
G P +K L NG+S G ++G +GAGK+TL++ +AG T G I + ++
Sbjct: 14 GTPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK 72
Query: 920 YPKKQ--ETFARI-----SGYCEQNDIHSPFVTVYESLFYSAWLR------LPPEVNSET 966
+ AR+ +G P +T+ E+L + L +N
Sbjct: 73 KSVAKRANLLARVFQDPLAGTA-------PELTIEENL--ALAESRGKKRGLSSALNERR 123
Query: 967 RKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
R F E + L L+ +GL LS QR+ L++ + + P I+ +DE T+
Sbjct: 124 RSSFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 1026 LDARAAAIVM 1035
LD + A VM
Sbjct: 179 LDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN---M 219
+LKD+S ++PG ++GP SGK+TL+ L DP+ SG + +G + +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ +SQ D + T+RE +A G E+ K A
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAH--- 445
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+ L DT+VG E +SGGQ++R+ ++
Sbjct: 446 --EFIAN---------------------LPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
L +DE ++ LD+ T I + K + T +I+ T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALK-KLLKGRTTLIIAHR---LSTIKNADRIIVLD 537
Query: 400 DGQIVYQGPRE 410
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 50/257 (19%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+LKDVS + G+ ++GP SGK+T+L L D S SG + +G ++ E
Sbjct: 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS---SGSILIDGQDIREVT 69
Query: 224 PE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ R + Q D + T+ + + +PD
Sbjct: 70 LDSLRRAIGVVPQ-DTVLFNDTIGYNIRYG-------------------------RPD-- 101
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMM 338
A E EA + K++ DT+VG+ RG+ SGG+K+RV +
Sbjct: 102 ------ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGE---RGLKLSGGEKQRVAIARAI 152
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ L +DE ++ LD+ T +I + G I + N D II+L
Sbjct: 153 LKNPPILLLDEATSALDTHTEREIQAALRDVS---KGRTTIVIAHRLSTIVNA-DKIIVL 208
Query: 399 SDGQIVYQG-PRELVLE 414
DG+IV +G EL+ +
Sbjct: 209 KDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 59/245 (24%), Positives = 102/245 (41%), Gaps = 57/245 (23%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+DVS + G L ++LGP GKTTLL +AG + PS G + NG ++ ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q++ + + V + +AF + +G+ RRE A
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRREIA-------------- 113
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVGPALAL 345
L ++GL+ + +SGG ++RV + V P L L
Sbjct: 114 -------------HQMLALVGLEGAEHKYIWQ-----LSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQI----VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS-- 399
+DE LD+ T Q+ ++ +++ +G V+ + E L +++LS
Sbjct: 155 LLDEPFGALDALTREQMQELLLDLWQE-----TGKQVLLITHDIEEALFLATRLVVLSPG 209
Query: 400 DGQIV 404
G++V
Sbjct: 210 PGRVV 214
|
Length = 259 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 67/286 (23%), Positives = 104/286 (36%), Gaps = 48/286 (16%)
Query: 132 LASKALPSFTKFFT----TIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPP 187
LP + I E L+ ++ IL D+S V PG ++GP
Sbjct: 8 SRGVELPEPKEPKKRHPIEINEPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPN 66
Query: 188 SSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFVPE--RTAAYIS--QHDNHIGEM 241
+GKTTLL L G+ PS SG VT G E + E + +S H+
Sbjct: 67 GAGKTTLLSLLTGEHPPS---SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE 123
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TVR+ + Y+ A +
Sbjct: 124 TVRDVVLSGF--FASIGIYQEDLTAEDLAAAQWL-------------------------- 155
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
L++LG AD G +S G+++RV +V L +DE + GLD Q
Sbjct: 156 -LELLGAKHLADRPFGS-----LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQ 209
Query: 362 IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
++N ++ A++ + A E F +LL +G++V QG
Sbjct: 210 LLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 64/213 (30%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L ++ G L ++G SG GKTTL++++AG Y G I + G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
G QN+ P+ V +++ + L V R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1047
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1048 VVCTIHQPSIDIFEAF---DELFLMKRG-GREV 1076
V+ H DI EA EL L+ G GR V
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 59/225 (26%), Positives = 95/225 (42%), Gaps = 27/225 (12%)
Query: 857 QQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIR 916
M+L V E L +SG R G + L+G +GAGK+TL+ +AG +G +G I+
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 917 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE 973
+G P + AR Y Q + V+ L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLH--------QPDKTRTELLND 108
Query: 974 VMELVEL-KPLRQSLVGLPGVNGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1027
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + R + G +V + H + + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 2e-09
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L D+S ++ G + +LGP +GK+TLL LAG L PS SG + +G ++ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 63/247 (25%), Positives = 99/247 (40%), Gaps = 46/247 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM--DEFVPE 225
++ VS V+ G + LLGP +GKTT + L L P+ SGR T GH++ +
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVR 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R + Q + E+T E L AR GV RRE+ +
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERIDEL---------- 115
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
L +GL AD +V + SGG ++R+ +V L
Sbjct: 116 -----------------LDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
F+DE + GLD T + ++ + G ++ E L D + ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 406 QG-PREL 411
+G P EL
Sbjct: 213 EGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 69/263 (26%), Positives = 105/263 (39%), Gaps = 64/263 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
+ DVS ++ G L+G SGK+TL LAG L PS SG + ++G ++D E
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELR 363
Query: 226 ---RTAAYISQH-----DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
R + Q + MTV + LA R G G+ E RR + A +
Sbjct: 364 RLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE------RRARVAEL-- 412
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L+++GL D +SGGQ++RV
Sbjct: 413 -------------------------LELVGL----PPEFLDRYPHELSGGQRQRVA---- 439
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+ ALA L +DE + LD S Q++N K + G + + +
Sbjct: 440 -IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD-LQEELGLTYLFISHDLAVVRYIA 497
Query: 393 DDIILLSDGQIVYQGPRELVLEF 415
D + ++ DG+IV +GP E V E
Sbjct: 498 DRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 68/258 (26%), Positives = 100/258 (38%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-DEFVPER 226
L DVS + G L LLGP SGKTTLL +AG P SG + + G + D V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
++ QH MTV + +AF R V R E E R K +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLR---VKPRSERPPEAEIRAKVHEL----------- 120
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
LK++ LD AD +SGGQ++RV + L
Sbjct: 121 ----------------LKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI--- 403
+DE LD+ ++ ++ +H + + E + D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 63/251 (25%), Positives = 108/251 (43%), Gaps = 47/251 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL ++S +KPG + ++G SGK+TL + P +GRV +GH++ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAW 73
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q +N + ++R+ +A A P ++
Sbjct: 74 LRRQVGVVLQ-ENVLFNRSIRDNIALA-------------------------DPGMSMER 107
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
++AA G + L DT+VG E G+SGGQ++R+ ++
Sbjct: 108 VIEAAKLAGAHDFI--------SELPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPR 158
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L DE ++ LD + I+ +N+H I +G VI ++ T D II++ G+
Sbjct: 159 ILIFDEATSALDYESEHAIM----RNMHDICAGRTVI-IIAHRLSTVKNADRIIVMEKGR 213
Query: 403 IVYQGPRELVL 413
IV QG + +L
Sbjct: 214 IVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 63/270 (23%), Positives = 99/270 (36%), Gaps = 59/270 (21%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NM 219
+ + DV+ ++ G +L+GP SGKTT L + ++P+ SG + +G ++
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
D R Y+ Q +TV E +A + G
Sbjct: 69 DPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK--------------------- 107
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
E D L ++GLD + D +SGGQ++RV V
Sbjct: 108 -------------ERIKKRADELLDLVGLD---PSEYADRYPHELSGGQQQRVG-----V 146
Query: 340 GPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
ALA L MDE LD T Q+ K + G ++ + E L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKLADR 205
Query: 395 IILLSDGQIVYQG-PRELVL----EFFESM 419
I ++ G+IV P E++ +F E
Sbjct: 206 IAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 35/203 (17%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY------P 921
K+ L VS + G + ++G SGAGK+TL+ + G + +G + + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 922 KKQETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
K+ R G Q N + S TV+E++ P E+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 980 LKPLRQSLVGL-------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
L VGL P LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 127 L-------VGLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 1033 IVMRTVRNT-VDTGRTVVCTIHQ 1054
++ +R+ + G T+V H+
Sbjct: 178 SILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-09
Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 30/183 (16%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK-- 923
D ++L+ VS PG A++G SG+GK+TL+ +L G +T +G + G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 924 -QETFARISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 982 PLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1033 IVM 1035
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 2e-09
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 38/170 (22%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE 925
+ +LL +S G A++G +GAGK+TL+ +LAG G ++G +++ G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
GY +Q+ +T + E + + +R
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTVLEELSEGFPDGDEQEVRA 421
Query: 986 SL--VGLPG------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 422 YLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 49/206 (23%), Positives = 79/206 (38%), Gaps = 43/206 (20%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L GV+ + G + ALMG +G+GK+TL + G G+I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 931 SGYCEQNDIHSPFVTVYE----SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
DI + E +F A+ PPE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFL-AFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V+ H + + D + ++ G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDG 181
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 52/220 (23%), Positives = 89/220 (40%), Gaps = 51/220 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L ++ + G L+GP +GK+TLL + + P+ SG + NG ++ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Y+ + D + + V E +AFA GV R E+ +R AA
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+++GL + +SGG+++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS 380
L DE + LD TT++I+N K+ I+ T V++
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 71/304 (23%), Positives = 111/304 (36%), Gaps = 79/304 (25%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
+T L DVS + G + ++G +GK+TLL + P+ SG V +G ++
Sbjct: 16 TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTA 72
Query: 222 FVPE------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ I QH N + TV E +AF GV + E +
Sbjct: 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV----------PKAEIKQRV 122
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRV 332
L+++GL D+ R +SGGQK+RV
Sbjct: 123 AE------------------------LLELVGLS--------DKADRYPAQLSGGQKQRV 150
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPA 385
+ ALA L DE ++ LD TT I+ K IN G ++ L+
Sbjct: 151 A-----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHE 201
Query: 386 PE-TYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
E + D + +L G++V +G V E F + PK +F+ E E+
Sbjct: 202 MEVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEE 253
Query: 445 YWAH 448
Sbjct: 254 LLER 257
|
Length = 339 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 3e-09
Identities = 63/274 (22%), Positives = 102/274 (37%), Gaps = 62/274 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
L VS +K G LLGP GKTTLL +AG P+ SG + +G ++ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R + Q+ +TV E +AF R + + E+ R A
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
L ++ L+ A+ ++ SGGQ++RV +V
Sbjct: 115 ------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLD----SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L +DE LD ++ + + G + + E + D I +++
Sbjct: 152 LLLDEPLGALDLKLRKDMQLEL-----KRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G+I G P E+ E P + VADF+
Sbjct: 207 GKIQQIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 4e-09
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 42/184 (22%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 922 KKQETFA---RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
KK + R+ G Q +PF +++Y+++ Y P ++ K ++E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 978 VELKPLRQSLVGLP---------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L++ L GLS Q++RL IA L P ++ +DEPTS LD
Sbjct: 123 ---ESLKK--AALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDP 177
Query: 1029 RAAA 1032
A
Sbjct: 178 IATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 52/247 (21%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
HL + D++ V G + +LGP +GK+TLL +AG P SG + NG +
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETP---ASGEILINGVDHTAS 66
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
P ER + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
+K + + E+ +GL + +SGGQ++RV +V
Sbjct: 100 ---LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + LD + +++ Q + ++ + + + D ++ L +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 402 QIVYQGP 408
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 4e-09
Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ 924
+L G+ + G + ++G SG+GK+TL+ + G I ++++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPL 983
+ G Q P +TV E++ L P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENI------TLAPIKVKGMSKAEAEERALELLEK--- 122
Query: 984 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
VGL LS Q++R+ IA L NP ++ DEPTS LD V+ +
Sbjct: 123 ----VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVM 178
Query: 1039 RNTVDTGRTVVCTIHQ 1054
++ + G T+V H+
Sbjct: 179 KDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 5e-09
Identities = 55/270 (20%), Positives = 102/270 (37%), Gaps = 51/270 (18%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
T+L D+S ++ G L L+G GKTTLL A+AG + + ++GR+ ++ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R A + Q+ + V + +AF R +++ A I
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLR--------------AQKMPKADI--------- 114
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
A + D LK++GL + +SGG ++R+ +
Sbjct: 115 ----------AERVAD-ALKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE + LD++ + ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 405 YQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 219 AHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 53/194 (27%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 886 ALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS---GYCEQN---DI 939
A++G +GAGK+TL G +G + I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999
SP TV + + A+ + ++ ET + + ++ L+ LR + P + LS
Sbjct: 92 FSP--TVEQDI---AFGPINLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1058
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1059 IFEAFDELFLMKRG 1072
+ E D +++M +G
Sbjct: 201 VPEMADYIYVMDKG 214
|
Length = 277 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 5e-09
Identities = 55/232 (23%), Positives = 92/232 (39%), Gaps = 40/232 (17%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-YPKKQ 924
E++LV LN +S F + ++G SG+GK+TL+ G Y G I++ Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 925 ETFARISGYCEQNDI------------------HSPFVTVYES--LFYSAWLRLPPEVNS 964
+ + I + F E +F L +
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 965 ETRKMFIEEVMEL----VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+ K ++ + M L +E P GLS Q++R+ IA L P I+ D
Sbjct: 154 KLAKFYLNK-MGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFD 201
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
EPT+GLD + +M+ + + +TV H + E DE+ +M +G
Sbjct: 202 EPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 5e-09
Identities = 66/224 (29%), Positives = 94/224 (41%), Gaps = 42/224 (18%)
Query: 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGDIRISGYPK-------- 922
VS PG + ++G SG+GK+TL+ LAGR G T +R SG
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMR-SGAELELYQLSEA 78
Query: 923 KQETFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFI---------- 971
++ R G+ QN + V SA N R M I
Sbjct: 79 ERRRLMRTEWGFVHQNPRDGLRMRV------SA------GANIGERLMAIGARHYGNIRA 126
Query: 972 --EEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
++ +E VE+ P R + LP S ++RL IA LV P ++FMDEPT GLD
Sbjct: 127 TAQDWLEEVEIDPTR--IDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS 182
Query: 1030 AAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
A ++ +R V D G V+ H + A L +M++G
Sbjct: 183 VQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 6e-09
Identities = 53/188 (28%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L G+S + G TAL+G +GAGK+TL+ L G G +++ G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 932 ---GYCEQNDIHSPFV-TVYESL-FYSAWLRL-PPEVNSETRKMFIEEVMELVELKPLRQ 985
G Q+ F TV++ + F + L EV EE ++ V + R
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1046 RTVVCTIH 1053
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 7e-09
Identities = 61/245 (24%), Positives = 96/245 (39%), Gaps = 51/245 (20%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L D+S V+ G + LLGP +GKTT + + G + P SG V ++G +D
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+ + +M V + L + A+ +G L + E I
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKG----------LKKEEARRRI---------- 109
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPALA 344
D +L+ L L A+ V +E+ S G +++V ++ P L
Sbjct: 110 --------------DEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIH--INSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE +GLD V K I +G VI L D ++LL+ G+
Sbjct: 150 LILDEPFSGLDPVN----VELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
Query: 403 IVYQG 407
V G
Sbjct: 206 AVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 54/215 (25%), Positives = 82/215 (38%), Gaps = 55/215 (25%)
Query: 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG- 216
+ + L+ILK V +VK G ++GP SGK+TLL LAG DPS SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 217 --HNMDE----FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRRE 270
H +DE + R ++ Q + I +T E +A +G + ++
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG--AKAL 130
Query: 271 KAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR---RGVSGG 327
L+ +GL G + +SGG
Sbjct: 131 --------------------------------LEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
+++RV G LF DE + LD +T +I
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKI 185
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 18/210 (8%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP----KKQET 926
+L+GV + R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 927 FARISGYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
R++ + + F V E R ++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGV---- 129
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
P V LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1045 GRTVVCTIHQPSIDIFEAF-DELFLMKRGG 1073
G+T V IH +D+ + DEL L+ G
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLADGR 216
|
Length = 402 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 54/190 (28%), Positives = 86/190 (45%), Gaps = 19/190 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G+S + G + ++G SG+GK+TL+ L G G IT D G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 990 LPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
L LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1045 GRTVVCTIHQ 1054
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 8e-09
Identities = 52/249 (20%), Positives = 97/249 (38%), Gaps = 52/249 (20%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
+HL + D++ V G + ++GP +GK+TLL +AG ++P SG + N +
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
P +R + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEMM 338
+K + + E+ D + D + R +SGGQ++RV +
Sbjct: 99 ---LKLNAEQQEKVV------------DAAQQVGIADYLDRLPEQLSGGQRQRVALARCL 143
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
V P L +DE + LD +++ KQ T ++ + + + I ++
Sbjct: 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVV 202
Query: 399 SDGQIVYQG 407
S G+I
Sbjct: 203 SQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 9e-09
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 33/225 (14%)
Query: 887 LMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQNDIHSPF 943
L+G SG GKTTL+ +LAG + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003
+TV E++ + +R +V K + E + LV+L+ + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEA 1062
+ +A LV P I+ +DEP S LD + + ++ + G T V H D EA
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH----DQEEA 164
Query: 1063 F---DELFLMKRG-------GREVYVGPLGHHSCHLI---SYFEV 1094
D + +M++G E+Y P I + FE
Sbjct: 165 MTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIGEINVFEA 209
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 1e-08
Identities = 48/182 (26%), Positives = 76/182 (41%), Gaps = 31/182 (17%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
LL VS PG L+G +GAGK+TL+ +LAG +G++ R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 930 ISGYCEQNDIHSPFVTVYESLF--YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ GY Q P TV + + + L E+ + + L EL+ L + L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 988 ---------------VGLPG----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+G P V+ LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1029 RA 1030
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 61/206 (29%), Positives = 89/206 (43%), Gaps = 26/206 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+L V L +S R G + L+G +GAGK+TL+ +AG G +G I+ +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 919 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P + AR Y Q + V++ L L P + +E + EV
Sbjct: 56 GQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVA 111
Query: 976 ELVELKPLRQSLVGLPGVNGLS-TE-QRKRLTIAVEL----VANPS--IIFMDEPTSGLD 1027
E + L +G VN LS E QR RL AV L NP+ ++ +DEP + LD
Sbjct: 112 EALGL----DDKLGRS-VNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLD 165
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIH 1053
A + R + G VV + H
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 874 GVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISG---YPKKQETF 927
V+ + G + AL+G SG GKTT + + + G +TG I + G Y + +
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 928 A--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
A R G Q P ++V++++ A L+L + + E + L +
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVK 139
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ P GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 140 DRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 1e-08
Identities = 57/202 (28%), Positives = 96/202 (47%), Gaps = 20/202 (9%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFARISGYCEQ 936
+ G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E +
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP------VR 83
Query: 937 NDIHSPFVTVYESLFYSAWLR---LPPE---VNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ F LF L+ P+ + E + E +E+V L +
Sbjct: 84 KKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA--DEFWEKS 141
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
P LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 142 P--FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 1051 TIHQPSIDIFEAFDELFLMKRG 1072
H D+ + D ++L+++G
Sbjct: 200 VTHLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL D+S + G++T L+GP GK+TLL A L P SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLT---ELSRREKAAGIKPDP 279
+ A ++ QH +TVRE +A+ R L+ LS + A
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAYG--------RSPWLSLWGRLSAEDNAR------ 118
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
++ M+ ++ AD + D +SGGQ++R ++
Sbjct: 119 -VNQAMEQ------------------TRINHLADRRLTD-----LSGGQRQRAFLAMVLA 154
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ +DE +T LD + +++ ++ G V+++L + D +++L+
Sbjct: 155 QDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASRYCDHLVVLA 212
Query: 400 DGQIVYQGPRELVL 413
+G ++ QG E V+
Sbjct: 213 NGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-08
Identities = 56/201 (27%), Positives = 91/201 (45%), Gaps = 20/201 (9%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
P + L+ VS RPG A++G G+GK+TL+ +L G + T G + + I
Sbjct: 474 PGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQID 533
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET--RKMFIEEVMELVE 979
R GY Q D + T+ +++ A P + E R + V E V
Sbjct: 534 P--ADLRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEEILRAAELAGVTEFVR 585
Query: 980 LKPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
P L +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 586 RHP--DGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1037 TVRNTVDTGRTVVCTIHQPSI 1057
++ + G+T+V H+ S+
Sbjct: 643 RLKRWL-AGKTLVLVTHRTSL 662
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 59/221 (26%), Positives = 89/221 (40%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L DVS ++ G L GP +GKTTLL L G L PS G+V G +++ R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRL-RGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + D + + TV E +A +G R E+ RR AA
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
L+ +GL+ AD +SGG+++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
P L L DE + LD + +I++ K+ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 57/195 (29%), Positives = 84/195 (43%), Gaps = 30/195 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT-GGYITGDIRISGYPKK 923
L G+S PG AL+G SG GK+T++ D +G G D+ + +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQ 78
Query: 924 QETFARISGYCEQNDIHSP---FVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVE 979
I G Q P T+ E++ Y EV +K I + +M L
Sbjct: 79 ------I-GLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSL-- 125
Query: 980 LKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
P +LVG G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 126 --PDGYDTLVGERGSQ-LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL 182
Query: 1039 RNTVDTGRTVVCTIH 1053
+ GRT + H
Sbjct: 183 -DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 51/242 (21%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+D++ ++ G L ++LGP GKTTLL +AG + G +T +G ++ ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q++ + V++ +AF + GV R E A +
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEKM-------QRLEIAHQM----------- 112
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR--GVSGGQKKRVTTGEMMVGPALA 344
LK +GL+ G E R +SGGQ++RV +
Sbjct: 113 ----------------LKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQL 149
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402
L +DE LD+ T Q+ + +G V+ + E + +++LLS G+
Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGR 208
Query: 403 IV 404
+V
Sbjct: 209 VV 210
|
Length = 255 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 54/181 (29%), Positives = 83/181 (45%), Gaps = 36/181 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYP--- 921
L ++ + +TAL+G SG GK+TL+ D++ G + ITGDI +G
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENIMD 77
Query: 922 KKQETFA--RISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ A R G Q +PF ++YE++ Y P ++ E K ++ ++E
Sbjct: 78 SGADVVALRRKIGMVFQRP--NPFPKSIYENVAYG------PRIHGEKNKKTLDTIVE-- 127
Query: 979 ELKPLRQSLVG-------LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
K L+ + + LS Q++RL IA L NP +I MDEP S LD A
Sbjct: 128 --KSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIAT 185
Query: 1032 A 1032
A
Sbjct: 186 A 186
|
Length = 253 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 65/223 (29%), Positives = 100/223 (44%), Gaps = 46/223 (20%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITG-DIRISGYP 921
+LNG+S G A++G SGAGK+T++ DV +G T I G DIR
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV--- 330
Query: 922 KKQETFARISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
Q++ R G Q ND T+ ++ Y P+ +E + E
Sbjct: 331 -TQQSLRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAAAE 374
Query: 977 LVELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
++ QSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 375 AAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTH 433
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +R V GRT + H+ S I +A DE+ ++ G
Sbjct: 434 TEQAIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P+ L VS + G A++G +G+GK+TL +L G G I + G
Sbjct: 16 PDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVL 71
Query: 923 KQETFARIS---GYCEQNDIHSP---FV--TVYESLFYSAWLRLPPEVNSETRKMFIEEV 974
+ET + G QN P FV TV + + + E R+ +E V
Sbjct: 72 SEETVWDVRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERV 121
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+ + + L P + LS Q++R+ IA L P II +DE TS LD R V
Sbjct: 122 DQALRQVGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179
Query: 1035 MRTVRNTVDTGR-TVVCTIHQPSIDIFEAF--DELFLMKRG 1072
+ TVR + TV+ H D+ EA D + +M +G
Sbjct: 180 LETVRQLKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 43/194 (22%), Positives = 71/194 (36%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+ +L+D++ V+ G +LGP GK+TLL +AG P+ SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKS--------------------------- 103
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
EA L+++GL D ++ SGG ++RV A+A
Sbjct: 104 -------KAEARERAKELLELVGLAGFEDKYP-HQL----SGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 63/271 (23%), Positives = 104/271 (38%), Gaps = 54/271 (19%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
H ++ + ++D+S + G + LG +GK+T L L G L P+ SG+V N
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT---SGKVRVN 84
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
G P R + + M + L + E+L I
Sbjct: 85 G-----KDPFRRREEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKL---------I 125
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
PD D F + D+ ++L L + + +R+ +S GQ+ R
Sbjct: 126 YEIPD-DEFAERL-----------DFLTEILDL----EGFLKWPVRK-LSLGQRMRAELA 168
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
++ P LF+DE + GLD + I F + + V LL T ++FDDI
Sbjct: 169 AALLHPPKVLFLDEPTVGLDVNAQANIRE-FLKEYNEERQATV--LL-----TTHIFDDI 220
Query: 396 -------ILLSDGQIVYQGPRELVLEFFESM 419
+L+ GQ+V+ G + E F
Sbjct: 221 ATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 62/257 (24%), Positives = 102/257 (39%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM---DEF 222
LK+ + + G +LG SGK+TLL LAG DP G +T NG + DE
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQ 408
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
T + ++Q H+ T+R+ L A PD D
Sbjct: 409 ALRETISVLTQ-RVHLFSGTLRDNLRLA-------------------------NPDAS-D 441
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ AA + ++ +T +G E R +SGG+++R+ ++ A
Sbjct: 442 EELWAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDA 493
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-----FDDIIL 397
+DE + GLD T Q++ + H T ++ T+ L D II+
Sbjct: 494 PLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDRIIV 544
Query: 398 LSDGQIVYQGPRELVLE 414
L +G+I+ +G +L
Sbjct: 545 LDNGKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 26/212 (12%)
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCE 935
G + A++G SGAGK+TL++++AG +T +G+I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 936 QNDIHSPFVTVYES--LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
+N++ + +TV ++ L S L+L N+E R+ +E V L L LPG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGF---LKRLPGE 129
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1049
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1050 CTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
H P D D + + GR G
Sbjct: 185 MVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 3e-08
Identities = 57/214 (26%), Positives = 97/214 (45%), Gaps = 23/214 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L GV+ + G +L+G SG GK+TL+++++G G + + G + R+
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTS--GGVILEGKQITEPGPDRMV 58
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ QN P++TV E++ A R+ P+++ R+ +EE + LV L ++ P
Sbjct: 59 VF--QNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVG---LTEAADKRP 112
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1050
G LS ++R+ IA L P ++ +DEP LDA + + + TV+
Sbjct: 113 G--QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLM 170
Query: 1051 TIHQPSIDIFEAFDELFL-----MKRGGREVYVG 1079
H D+ EA L L M G +G
Sbjct: 171 VTH----DVDEA---LLLSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-------KK 923
+L+ VS + G + A++G SG+GK+TL+ +L G T +GD+ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
P + LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-08
Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 56/256 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +S +++PG L+G SGK+TL+ + +P SG++ +GH++ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R A +SQ D + T+ +A+ Q
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQ------------------------------ 433
Query: 285 MKAASTEGEEANVITDYYLK--VLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
A E E A + Y + V L + DT +G+ +SGGQ++R+ ++ A
Sbjct: 434 --ADRAEIERA--LAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDA 488
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIILL 398
L +DE ++ LD+ + + + + T VI S ++ A D I+++
Sbjct: 489 PILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 399 SDGQIVYQGPRELVLE 414
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
L VS P +T L+GP SGK+TLL ++ L+P + ++G + YNGHN+ D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N M++ E + + R +G+ ++K D
Sbjct: 81 TVDLRKEIGMVFQQPNPF-PMSIYENVVYGLRLKGI------------KDKQ---VLDEA 124
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
++ +K AS E + + D L G+SGGQ++RV ++
Sbjct: 125 VEKSLKGASIWDEVKDRLHDSAL-------------------GLSGGQQQRVCIARVLAT 165
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ +DE ++ LD + +I
Sbjct: 166 SPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-08
Identities = 48/217 (22%), Positives = 72/217 (33%), Gaps = 50/217 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG--HNMDEF 222
+ + +S + G + GP GKTTLL LAG L P SG V +NG
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
P R Y+ E++ E L F A
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAA------------------------------ 99
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
A E+A L +GL D +S GQ++R+ + + A
Sbjct: 100 -IHGGAQRTIEDA-------LAAVGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE +T LD + + + H+ G V+
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRA--HLARGGIVL 181
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 62/248 (25%), Positives = 103/248 (41%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ V PG + LLG +GK+TL+ L+G +P+ G +T N N ++ +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID- 282
A I Q + I E+TV E L + R LT +K G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
M+ A ++ L +GL + D V + +S K+ + + ++ A
Sbjct: 120 REMR------VRAAMM----LLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399
+ MDE ++ L + F I+N + GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 37/218 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYITGDIRISGYPKK- 923
+N A G + +MG+SG+GK+T + +L AG+ +I G+ + P +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGENIMKQSPVEL 65
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+E + G Q P +T+ ++ L + RK E+ +EL++L
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL--- 116
Query: 984 RQSLVGLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
VGL + LS ++R+ +A L A P I+ MDE S LD + +
Sbjct: 117 ----VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172
Query: 1039 RNTVDT-GRTVVCTIHQPSIDIFEAF---DELFLMKRG 1072
+ T +T+V H D+ EA D + +MK G
Sbjct: 173 KKLQATLQKTIVFITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 70/278 (25%), Positives = 113/278 (40%), Gaps = 59/278 (21%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----LKVSG 210
L ++H IL+D+S ++PGR+T LLG +GK+TLL ALAG L +V+G
Sbjct: 5 DHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG 64
Query: 211 RVTYNGHNMDEFVPERTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS 267
VT NG + R A A + Q + AF+AR + RY
Sbjct: 65 DVTLNGEPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRYP------ 110
Query: 268 RREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327
+ AG D ++ +A + G A +VG ++ +SGG
Sbjct: 111 -HARRAGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSGG 149
Query: 328 QKKRVTTGEMM---------VGPALALFMDEISTGLDSSTTFQI---VNCFKQNIHINSG 375
+ RV ++ P L +DE + LD + ++ V ++ ++
Sbjct: 150 ELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL--- 206
Query: 376 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
V++++ D I +L+DG IV G VL
Sbjct: 207 -GVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 5e-08
Identities = 59/222 (26%), Positives = 94/222 (42%), Gaps = 32/222 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQ--ET 926
+N S G + +MG+SG+GK+TL+ +L T G I D + I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 927 FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADK 160
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------VRN 1040
N LS ++R+ +A L +P I+ MDE S LD ++RT +
Sbjct: 161 YP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDELLEL 210
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVG 1079
+T+V H D+ EA D + +MK G V VG
Sbjct: 211 QAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 41/193 (21%), Positives = 69/193 (35%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-- 224
+L +V+ + G + L+GP GK+TLL + G L +G + N +D +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDM-LPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+R + Q ++V + L FA
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFAL--------------------------------- 102
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
A+ +G + L+ GLD +SGGQ+ RV ++ A
Sbjct: 103 --PATLKGNARRNAANAALERSGLDGAFHQDPAT-----LSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 64/257 (24%), Positives = 93/257 (36%), Gaps = 56/257 (21%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG P SG + +G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY 301
TV E +AF + + V E+ R A
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L+++ L D +SGGQ++RV +V P + L +DE + LD
Sbjct: 85 -LRLVQL-----EEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PRELVLEFFESM 419
Q+ K I G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 7e-08
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 29/191 (15%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+ ++ V+PG + ++GP SGK+TL LAG+ D + G V + G ++ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
A GE + + GV ++ + T L+ G +P +D F
Sbjct: 74 DRA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF- 118
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-GPALA 344
+ +++ + K+ L + D ++ + G SGG+KKR +M V P L
Sbjct: 119 -------DFQDLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELC 167
Query: 345 LFMDEISTGLD 355
+ +DE +GLD
Sbjct: 168 I-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 7e-08
Identities = 68/275 (24%), Positives = 107/275 (38%), Gaps = 58/275 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ ++ + G LLGP GKTT+L +AG P SGR+ +G ++ E
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAE 84
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R + Q MTV E +AF R Q P +I
Sbjct: 85 NRHVNTVFQSYALFPHMTVFENVAFGLRMQKT--------------------PAAEIT-- 122
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR--GVSGGQKKRVTTGEMMVGPA 342
EA L+++ L+ A R+ +SGGQ++RV +V
Sbjct: 123 -----PRVMEA-------LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + LD Q+ N K + G + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
I G PRE+ ++ PK VA F+ E+
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEI 248
|
Length = 375 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 63/217 (29%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL--LALAGKLDPSLKVSGRVTYNGHN- 218
KH LKD++ + ++T L+GP GK+TLL L L P +V G V +G N
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 219 ----MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR-EKAA 273
+D R + Q N M++ + +A+ R G+ + EL E +
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGIKDK-----ELDEIVESS- 129
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKK 330
+K A+ E V D + + G+SGGQ++
Sbjct: 130 -----------LKKAALWDE----------------------VKDRLHKSALGLSGGQQQ 156
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
R+ + ALA L MDE ++ LD +T +I
Sbjct: 157 RLC-----IARALAVKPEVLLMDEPTSALDPISTLKI 188
|
Length = 253 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 9e-08
Identities = 59/257 (22%), Positives = 110/257 (42%), Gaps = 54/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L DVS + G +T ++GP +GK+T LL++ +L K SG +T +G + +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGFG--------RFP--------------------- 102
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ + T +E I + ++ L L+ +D + DE+ SGGQ++R +
Sbjct: 103 -YSQGRLT--KEDRRIINEAIEYLHLEDLSDRYL-DEL----SGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
LA + +DE LD + QI+ ++ G ++ +L D I+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLAD-ELGKTIVVVLHDINFASCYSDHIVA 208
Query: 398 LSDGQIVYQGPRELVLE 414
L +G++V QG + +++
Sbjct: 209 LKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 9e-08
Identities = 46/216 (21%), Positives = 90/216 (41%), Gaps = 46/216 (21%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
L ++ G L A++G G+GK++L+ L G K G ++ I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 929 RISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-L 983
Y Q P++ T+ E+ LF + E+V++ L+P L
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILF-----------GKPFDEERYEKVIKACALEPDL 110
Query: 984 R------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMR 1036
+ +G G+N LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 111 EILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
Query: 1037 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + +T + HQ + + D++ ++ G
Sbjct: 170 CILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 864 VPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------ITGDIRI 917
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG +TGD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 918 SGYP 921
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 30/223 (13%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YITGDIRISGYPKKQ- 924
V +N VS R G + +MG+SG+GK+TL+ + T G I G I+ +K+
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQ-DIAAMSRKEL 96
Query: 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E + Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGW 153
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----ARAAAIVMRTVR 1039
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 154 EHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVG 1079
+T+V H D+ EA D + +MK GR V VG
Sbjct: 209 E---LQKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVG 243
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN---M 219
T+L DVS ++ G + LLGP SGK+TLL +AG +P SG + +G + +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDL 67
Query: 220 DEFVP--ERTAAYISQHDNHIGEMTVRETLAFA 250
++ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 44/203 (21%), Positives = 70/203 (34%), Gaps = 48/203 (23%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----- 221
+LK ++ + G + LLG +GK+TLLL L G L P SG V +G +D
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q D+ + V + +AF G+
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGL------------------------ 99
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E L +G + +SGG+KKRV +
Sbjct: 100 ----------SEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIV 363
L +DE + GLD + Q++
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQML 167
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
LL +S G L L G +GAGKTTL+ ++AG G+I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 931 SGYC---EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
C ++ I +P++T+ E+ Y +++ + I E+ L L+ L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1048 VVCTIHQ 1054
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETF 927
L+G++ RPG AL+G SGAGK+TL +L + +G I + G +Q E
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELR 413
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
AR++ + + + +V E++ Y EV + R E + L +
Sbjct: 414 ARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDTY 469
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
+G GV LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GRT
Sbjct: 470 LGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGRT 527
Query: 1048 VVCTIHQ 1054
+ H+
Sbjct: 528 TLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-07
Identities = 67/258 (25%), Positives = 109/258 (42%), Gaps = 46/258 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
IL D+S +K T ++G SGK+TL L G SG + NG ++ + +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DR 543
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q N++ + E F+ G+ E L G K + D
Sbjct: 544 HT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKENVSQDEIWA 583
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
A A + D LG T + +E +SGGQK+R+ ++ + L
Sbjct: 584 ACEI----AEIKDDIENMPLGYQ----TELSEE-GSSISGGQKQRIALARALLTDSKVLI 634
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTA--VISLLQPAPETYNLFDDIILLSDGQIV 404
+DE ++ LD+ T +IVN +++ T V L A ++ D II+L G+I+
Sbjct: 635 LDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKII 687
Query: 405 YQGP-RELVLE--FFESM 419
QG EL+ F+ S+
Sbjct: 688 EQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 40/185 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L G+S + A +G SG GK+T + D++ + + G+IRI G Y
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRNIYD 74
Query: 922 KKQET--FARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
K + + G Q +PF +++E++ Y LR VN FI + +E
Sbjct: 75 KGVQVDELRKNVGMVFQRP--NPFPKSIFENVAYG--LR----VNGVKDNAFIRQRVEET 126
Query: 979 --------ELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L++S L G Q++RL IA + +PS++ MDEP S LD
Sbjct: 127 LKGAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPI 180
Query: 1030 AAAIV 1034
+ A V
Sbjct: 181 STAKV 185
|
Length = 250 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 1e-07
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 29/183 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L+ VS R G + +L G +GAGK+TLM VL+G G G+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 932 GYCEQND---IHS-----PFVTVYESLFYSA-WLRLP----PEVNSETRKMFIEEVMELV 978
E+ IH ++V E++F + +K+
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKL--------- 127
Query: 979 ELKPLRQSL-VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
L L+ + P V L Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 128 -LAQLKLDINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDI 185
Query: 1038 VRN 1040
+R+
Sbjct: 186 IRD 188
|
Length = 506 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 58/258 (22%), Positives = 95/258 (36%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DE-- 221
+ V+ V+ G + LGP +GKTT + L L P+ SG G+++ +
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
VP+ + ++T RE L R G L + E+A +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG-------LPKDEAEERAEEL-- 108
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
L++ L AD VG SGG ++R+
Sbjct: 109 -------------------------LELFELGEAADRPVG-----TYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
++ LF+DE +TGLD T + + K+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-----EGVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSDGQIVYQG-PREL 411
I ++ G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 57/257 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
+LKD++ +KPG ++GP +GKTTL+ L DP G++ +G ++
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDISRKS 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ Q D + T+ E + +P+ +
Sbjct: 75 LRSMIGVVLQ-DTFLFSGTIMENIRLG-------------------------RPNATDEE 108
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
++AA G ++ L G DT++G E +S G+++ + M+
Sbjct: 109 VIEAAKEAG------AHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLRD 157
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIIL 397
L +DE ++ +D+ T +++ + + + +I S ++ A D I++
Sbjct: 158 PKILILDEATSNIDTETE-KLIQEALEKLMKGRTSIIIAHRLSTIKNA-------DKILV 209
Query: 398 LSDGQIVYQGPRELVLE 414
L DG+I+ +G + +L
Sbjct: 210 LDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 61/242 (25%), Positives = 111/242 (45%), Gaps = 33/242 (13%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
++ FD V Y+ +G P + ++ V+ F G A++G +G+GK+TL+ +
Sbjct: 2 TIRFDNVSYTYQ-------KGTPYEH-QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNI 53
Query: 903 AG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLFYSAWL 956
+ T G +T DI I+ K ++ + R + V+ ES + +
Sbjct: 54 NALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFEDTV 103
Query: 957 RLPPEVNSETRKMFIEEVME-----LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV 1011
+ KM ++EV L++L R + P +S Q +++ I L
Sbjct: 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSILA 161
Query: 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070
NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+ +MK
Sbjct: 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMK 220
Query: 1071 RG 1072
G
Sbjct: 221 EG 222
|
Length = 286 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
D LVL VS PG +TAL+G SG+GK+T++ +L + GG + D G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLD----GKP--- 77
Query: 925 ETFARISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELV----- 978
IS Y E +HS V E + ++ L+ ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 979 -----ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
EL + VG G + LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1034 VMRTVRNTVDTGRTVVCTIHQ 1054
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 69/270 (25%), Positives = 117/270 (43%), Gaps = 49/270 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK ++ + G + ++GP SGK+TL +AG P+ K+ G + + G ++ + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDILFKGESILDLEPE 79
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELS--RREKAAGIKPDPDIDV 283
A H+G LAF + G L+ + K G P+ D
Sbjct: 80 ERA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQG-LPELDPLE 125
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM-MVGPA 342
F++ +I + LK++G+D + + + G SGG+KKR +M ++
Sbjct: 126 FLE----------IINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY-NLFDDII----- 396
LA+ +DE +GLD I N + S ++I + Y L D I
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGI--NKLMTSENSIILITH-----YQRLLDYIKPDYVH 223
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
++ +G+I+ G EL E E G+ K+
Sbjct: 224 VMQNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 25/223 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI---TGDIRISGYPKKQET 926
++ VS + G + ++G SGAGKTTL ++AG T G + GD + +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 927 FARISGYC----EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R Y ++ D++ P TV ++L + L LP E+ K I M + +
Sbjct: 360 RGRAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
+ L P + LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1043 -----DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ +T + H + + D LM R G+ V +G
Sbjct: 471 LKAREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 32/213 (15%)
Query: 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCE 935
F G +TA++G SG+GK+TL++++AG +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 936 QNDIHSPFVTVYES--LFYSAWLRLPPE----VNSETRKMFIEEVMELVELKPLRQSLVG 989
+N++ +TV ++ L S L+L E + ++ + + R
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLE-------KR----- 124
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1046
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079
TV+ HQP D + + GR G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 55/222 (24%), Positives = 108/222 (48%), Gaps = 36/222 (16%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPK 922
P+ K L ++ G AL+G SGAGKT+L++ L G++ G ++I+G
Sbjct: 360 PDGK-TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL-----GFLPYQGSLKINGIEL 413
Query: 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
++ E++ + + QN P T+ +++ P+ + E ++ + +E
Sbjct: 414 RELDPESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDE-------QLQQALE 460
Query: 980 LKPLRQSLVGLP-GVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+ + L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA +
Sbjct: 461 NAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+VM+ + N +T + HQ ++ +D++++M+ G
Sbjct: 521 EQLVMQAL-NAASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 45/188 (23%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L V +TA +G SG GK+T + D + G + +TG I + G Y
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYD 90
Query: 922 KKQ---ETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETR-KMFIEEVME 976
+ E AR+ G Q +PF ++YE++ Y P ++ R K ++E++E
Sbjct: 91 PRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVE 141
Query: 977 LVELKPLRQSLVGL----------PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
LR++ GL PG GLS Q++RL IA + +P +I MDEP S L
Sbjct: 142 ----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194
Query: 1027 DARAAAIV 1034
D A A V
Sbjct: 195 DPIATAKV 202
|
Length = 267 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 14/176 (7%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG---YPKKQE 925
L+G+S F LTAL+G SG GK+T + L ITG+I+ G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 926 TFA--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-KP 982
+ G Q PF +VY+++ Y L++ + E +EE ++ + K
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ +L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 137 TKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 47/188 (25%), Positives = 79/188 (42%), Gaps = 60/188 (31%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L ++ +TAL+G SG GK+T + D++ K I G++ + G Q
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----Q 70
Query: 925 ETFARISGYCEQNDIHS-------------PF-VTVYESLFYSAWLRLPPEVNSETRKMF 970
+ Y D++ PF +++Y+++ Y P + K
Sbjct: 71 DI------YKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKK 118
Query: 971 IEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019
++E++E K L+ + + L GLS Q++RL IA L P ++ M
Sbjct: 119 LDEIVE----KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPEVLLM 170
Query: 1020 DEPTSGLD 1027
DEPTS LD
Sbjct: 171 DEPTSALD 178
|
Length = 250 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 62/264 (23%), Positives = 112/264 (42%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+ ++++ + G T ++GP GK+TLL L+ + P G V +G ++ + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A I +Q+ G++TV+E +A RY +R K D +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVARG--------RYPHQPLFTRWRKE-------DEE 122
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
KA G IT + + DT+ SGGQ++R ++
Sbjct: 123 AVTKAMQATG-----ITHLADQSV------DTL---------SGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+ +DE +T LD S ++ + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 3e-07
Identities = 53/192 (27%), Positives = 82/192 (42%), Gaps = 40/192 (20%)
Query: 858 QMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GD 914
M+ G L+ +N V+ R + +L+G +GAGKTT+ + L G + TGG I
Sbjct: 12 MMRFGG-----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 915 IRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTVYESL-----------FYSAWL 956
I G P Q TF + + E +TV E+L +S L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLL 118
Query: 957 RLPPEVNSETRKM-FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015
+ P +E+ + +E V L G L+ Q++RL IA +V P
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPE 173
Query: 1016 IIFMDEPTSGLD 1027
I+ +DEP +GL+
Sbjct: 174 ILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
+ +++ + G +L+GP SGKTT + + ++P+ SG + +G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
R Y+ Q IG MTV E +A + + RE+A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWP-------KEKIRERA--------- 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
D L ++GLD D +SGGQ++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
ALA L MDE LD T Q+ FK + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ +G+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 57/220 (25%), Positives = 94/220 (42%), Gaps = 29/220 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P L+ +S PG AL+G SG+GK+TL++++ + +G I + G+
Sbjct: 341 PGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLAD 398
Query: 925 ETFARISGYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEV------ME 976
T A + D+ T+ ++ Y + + IE +
Sbjct: 399 YTLASLRRQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQD 450
Query: 977 LVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
V+ PL + +G GV LS QR+RL IA L+ + I+ +DE TS LD +
Sbjct: 451 FVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE---- 505
Query: 1036 RTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R V+ ++ GRT + H+ S E D + +M G
Sbjct: 506 RLVQAALERLMQGRTTLVIAHRLS--TIEKADRIVVMDDG 543
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 21/159 (13%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YPKKQETFARIS-G 932
+TAL+G SG GK+TL+ D++ G K ITG + + G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 933 YCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
Q +PF +++YE++ Y LR + + +E + L + +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-07
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 11/210 (5%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK----QETF 927
L+G+ RPG L G +GAGK+TLM +L+G G G+I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQS 986
Q P ++V E++F + LP + + + ++ ++L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL--KAH 190
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076
V C ++ +A + + R G+ V
Sbjct: 191 GVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ ++S V PG + LLGP +GKTT + G L+P+ G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 5e-07
Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 57/278 (20%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN----M 219
+LK +S V+ G + +++GP SGK+TLL L G +P SG +T +G +
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKK 70
Query: 220 DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
D R + Q N +TV E + A ++ + KA
Sbjct: 71 DILKLRRKVGMVFQQFNLFPHLTVLENVTLA------------PVKVKKLSKA------- 111
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
EA L+ +GL AD D +SGGQ++RV +
Sbjct: 112 --------------EAREKALELLEKVGL---ADKA--DAYPAQLSGGQQQRVAIARALA 152
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ P + LF DE ++ LD ++++ K G +I + + D +I +
Sbjct: 153 MDPKVMLF-DEPTSALDPELVGEVLDVMKDL--AEEGMTMIIVTHEMGFAREVADRVIFM 209
Query: 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+I+ +GP E EFF++ PK + FL ++
Sbjct: 210 DQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 50/181 (27%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQND 938
G + A+MG SGAGK+TL++++AG G D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 939 IHSPFVTVYESLFYSAWLRLPP--EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996
+TV +++ L L P ++N+E ++ + + + V + L LP L
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEK-VVDAAQQVGIADY---LDRLP--EQL 129
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1055
S QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 130 SGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
Query: 1056 S 1056
S
Sbjct: 190 S 190
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---TGDIRISGYPKKQETFARISGYCEQN 937
G L L+G +GAGKTTL+ R G I G ++++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 938 DIHS-----PFVTVYESLFYS-----AWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
H P ++V ++ WLR P + + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1048 VVCTIH 1053
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP------KKQ 924
+L VS + G L+G SG GK+TL +L G + G + G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 925 ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
F R Q+ + P +TV + + LR ++ +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 --EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 47/166 (28%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP------KK 923
LN VS + + G AL+G SG GK+TL +L G + G++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ----GNVSWRGEPLAKLNRAQ 83
Query: 924 QETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
++ F R Q+ I + P TV E + LR ++ R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 D--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 6e-07
Identities = 53/187 (28%), Positives = 81/187 (43%), Gaps = 46/187 (24%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L+GV+ +TALMG SG+GK+TL+ V + I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 931 SG--YCEQNDIHS--------------------PFVTVYESLFYSAWLRLPPEVNSETRK 968
SG Y + DI P ++++E++ + L+L V S +K
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENV--ALGLKLNRLVKS--KK 117
Query: 969 MFIEEVMELVELKPLRQSL---VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
E V +E L + + P LS Q++RL IA L P ++ DEPT+
Sbjct: 118 ELQERVRWALEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 1026 LDARAAA 1032
LD A
Sbjct: 177 LDPENTA 183
|
Length = 250 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 7e-07
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 25/184 (13%)
Query: 879 FRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITG--DIRISGYPKKQETFARISGY 933
F +TA +G +GAGKTT + +L G +G + G DI + +Q G
Sbjct: 953 FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL-----GM 1007
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
C Q++I +TV E + + A L+ + E ++ +E ++E L R
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE-----EA 1059
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRTVVC 1050
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT++
Sbjct: 1060 QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRTIIM 1115
Query: 1051 TIHQ 1054
+ H
Sbjct: 1116 STHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+ VS V G +T +LG GKTTLL L G L SG + +G ++ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETL 247
A AY+ Q +TV E L
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENL 96
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 7e-07
Identities = 52/254 (20%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
+K+V+ V+ G + L+GP GKTT L A+ L P +V+GR+ +G ++ D
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M+V + + + G+ R ++ R + A + +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW--DE 137
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+ +K +T G+SGGQ++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE ++ LD ++T +I + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISG---YPKKQE 925
L G+ F +TAL+G SG GK+T + L G ITG++ + G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 926 T--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP----PEVNSETRKMFIEEVMELVE 979
+ G Q PF ++YE++ Y LRL V E + +++ E
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 980 LK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+K L +S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 7e-07
Identities = 53/181 (29%), Positives = 78/181 (43%), Gaps = 36/181 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGD-IRISGYPKK 923
L+ +S F +TAL+G SG GK+T + D++ G + G I D I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 924 QETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
R G Q +PF +++E++ Y LR VN K ++ E +E +
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LR----VNGVKDKAYLAERVE----RS 129
Query: 983 LRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
LR + + L GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 130 LRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIAT 185
Query: 1032 A 1032
Sbjct: 186 Q 186
|
Length = 253 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 325 SGGQKKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
SGGQ++RV ++ P L L +DE ++GLD ++ +++ ++ G VI +
Sbjct: 82 SGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRE--LAEEGRTVIIVTH 138
Query: 384 PAPETYNLFDDIILLSDGQ 402
D +I+L DG+
Sbjct: 139 DPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 64/219 (29%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L + + VL + GVSG+GK+TL+ G Y +G R+ + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK-------- 56
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSL 987
S + +FI+++ L+++ L Q L
Sbjct: 57 -------------------------------FSRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+ LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1046 RTVVCTIHQPSIDIFEAFDELFLM-----KRGGREVYVG 1079
TV+ H D+ + D + K GG+ V+ G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-06
Identities = 54/196 (27%), Positives = 76/196 (38%), Gaps = 52/196 (26%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ +S V+ G LLGP +GKTT L L G P +G ++ G E VP
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCG----EPVPS 73
Query: 226 RT------AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R + Q DN + TVRE L V RY L+ + R +
Sbjct: 74 RARHARQRVGVVPQFDNLDPDFTVRENLL-------VFGRYFGLSAAAARALVPPL---- 122
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
L+ L+ AD VG+ +SGG K+R+T +V
Sbjct: 123 -----------------------LEFAKLENKADAKVGE-----LSGGMKRRLTLARALV 154
Query: 340 GPALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 155 NDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 65/264 (24%), Positives = 111/264 (42%), Gaps = 70/264 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ +K G +T +LG +GK+TL L G L PS SGR+ ++G +D
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPID------- 71
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
Y + G M +RE+ VG ++ DPD +F
Sbjct: 72 --YSRK-----GLMKLRES---------VGMVFQ----------------DPDNQLF--- 96
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTM---VGDEMRR-GV-----------SGGQKKRV 332
A+V D + L + D + V + ++R G+ S GQKKRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
++V L +DE + GLD +I+ + T +I+ + L+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD--IDIVPLY 208
Query: 393 -DDIILLSDGQIVYQG-PRELVLE 414
D++ ++ +G+++ QG P+E+ E
Sbjct: 209 CDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-06
Identities = 63/260 (24%), Positives = 108/260 (41%), Gaps = 45/260 (17%)
Query: 157 ILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
I+P K L+ +S ++ G ++GP SGK+TL + G P+ SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDG 379
Query: 217 HNMDEFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273
++ ++ E + Y+ Q D + TV E +A R+
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF------------- 415
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333
G DP+ + EA + + +L L DT++G +SGGQ++R+
Sbjct: 416 GENADPEKII----------EAAKLAGVHELILRLPDGYDTVIGPG-GATLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393
+ G + +DE ++ LD + N K + T V+ +P+ D
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVD 521
Query: 394 DIILLSDGQIVYQGPRELVL 413
I++L DG+I G R+ VL
Sbjct: 522 KILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (122), Expect = 1e-06
Identities = 68/276 (24%), Positives = 110/276 (39%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVP 224
L D+ VK G T L+G SGK+TLL L G L P+ + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
E+A I L+++GL ++ +SGGQ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + GLD +++ F ++IH SG V+ + + + D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLF-ESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 1e-06
Identities = 57/216 (26%), Positives = 85/216 (39%), Gaps = 44/216 (20%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG------ 919
EDK +L G++ RPG + A+MG +G+GK+TL LAGR+ G + G
Sbjct: 12 EDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL 70
Query: 920 ---------------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNS 964
YP I G Q + + V R ++
Sbjct: 71 SPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQEPLDR 117
Query: 965 ETRKMFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDE 1021
+ +EE + L+++ L +S VN G S ++KR I V P + +DE
Sbjct: 118 FDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPELCILDE 171
Query: 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
SGLD A IV V + D R+ + H I
Sbjct: 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI 207
|
Length = 248 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 1e-06
Identities = 67/247 (27%), Positives = 109/247 (44%), Gaps = 46/247 (18%)
Query: 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM 899
+ SLT + V + P+ +L G+S + G AL+G +G GK+TL+
Sbjct: 335 DQVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 900 DVLAGRKTGGY--ITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES--LFYSAW 955
+L T + G+I ++G P I+ Y E + V + LF SA
Sbjct: 384 QLL----TRAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLF-SAT 429
Query: 956 LR-----LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP---GVNG--LSTEQRKRLT 1005
LR P + E + EV++ V L+ L + GL G G LS +++RL
Sbjct: 430 LRDNLLLAAPNASDEA----LIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485
Query: 1006 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065
IA L+ + ++ +DEPT GLDA ++ + +TV+ H+ + E FD
Sbjct: 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLA-EHAQNKTVLMITHR--LTGLEQFDR 542
Query: 1066 LFLMKRG 1072
+ +M G
Sbjct: 543 ICVMDNG 549
|
Length = 574 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-06
Identities = 53/204 (25%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIT-GDIRISGY 920
P VL +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 14 PNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKI 71
Query: 921 PKKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL---PPEVNSETRKMFIEEVM 975
+ I Q+ P LF S +R P S+ + + +
Sbjct: 72 GLHDLRSRISIIP----QD----PV------LF-SGTIRSNLDPFGEYSDEE---LWQAL 113
Query: 976 ELVELKPLRQSLV-GLPGV-----NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E V LK +SL GL V LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 114 ERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053
A++ +T+R TV+ H
Sbjct: 174 TDALIQKTIR-EAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-06
Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF- 222
+L D+S + G++ LLGP SGKTTLL +AG + SG + ++G ++
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK--AAGIK 276
+R ++ QH MTV + +AF LT L RRE+ AA IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
LL+ ++ RPG + G SGAGKT+L+ LAG + +G I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-- 459
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ Q + P T+ E+L Y P+ + + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 990 L-PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081
+ H+P++ F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-06
Identities = 70/253 (27%), Positives = 109/253 (43%), Gaps = 49/253 (19%)
Query: 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904
FD+V +S D QGV VS +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 905 RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY----SAWLRL-- 958
++ +G I I G I + + V ++ + +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 959 PPEVNSETRKMF-IEEVMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016
P + E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS-------IDIFEA------- 1062
+ +DE TS LD A V + + + GRT H+ S I +F+
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 1063 -FDELFLMKRGGR 1074
FDE L+ RGGR
Sbjct: 552 SFDE--LVARGGR 562
|
Length = 588 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 33/162 (20%), Positives = 49/162 (30%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L P+ SG + +G + + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307
F R E L+ +G
Sbjct: 58 FFGLR------DKEADARAEE---------------------------------ALERVG 78
Query: 308 LDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDE 349
L D + SGGQK+RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 57/225 (25%), Positives = 84/225 (37%), Gaps = 62/225 (27%)
Query: 157 ILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
+ T +T LKDVS V G + ++G +GK+TL+ + G P+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDG 66
Query: 217 HNMDEFVP------ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT--RYEMLTELSR 268
++ R I QH N + TV E +A GV E + EL
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLEL-- 124
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
L+++GL+ AD +SGGQ
Sbjct: 125 ----------------------------------LELVGLEDKADAYPAQ-----LSGGQ 145
Query: 329 KKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQ 368
K+RV + ALA L DE ++ LD TT I+ +
Sbjct: 146 KQRVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD 185
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 56/196 (28%), Positives = 83/196 (42%), Gaps = 33/196 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+P SG VT
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Y+SQ E TV + + +G G E+L EL E+A + DPD ++
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAEL---EEAYALLADPDDELLA 117
Query: 286 KAASTEGE------EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+ + E EA L LG D V +SGG ++RV ++
Sbjct: 118 ELEALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALL 169
Query: 340 GPALALFMDEISTGLD 355
L +DE + LD
Sbjct: 170 EEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVPE 225
ILK V+ +K G + L+GP SGK+TL + G P +V G + + G ++ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 67/284 (23%), Positives = 115/284 (40%), Gaps = 75/284 (26%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
LK+++ + ++T L+GP GK+TLL +L L P +++ G+V ++G ++ D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M++ + +A+ R G+ + E+ + K A + D
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAAL-WDEV 134
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
D +A LGL SGGQ++R+ +
Sbjct: 135 KDRLHDSA-----------------LGL----------------SGGQQQRLC-----IA 156
Query: 341 PALA-----LFMDEISTGLDSSTTFQI---VNCFKQNIHINSGTAVI---SLLQPAPETY 389
ALA L +DE ++ LD T +I + K+ T VI ++ Q A
Sbjct: 157 RALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY-----TIVIVTHNMQQAA---- 207
Query: 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ D DG++V GP E + F + PK K D++
Sbjct: 208 RISDRTAFFYDGELVEYGPTE---QIFTN-----PKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 58/234 (24%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK V+ ++ G L+G GK+TLL ++G P+ SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
+ Q+ + + +TVRE +A A +L +LS+ E+ A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG K+RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
DE LD+ T + Q I V+ + E L D +++L++G
Sbjct: 139 DEPFGALDALTRGNLQEELMQ-IWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 52/266 (19%), Positives = 97/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----- 222
+ D + G + +++G SGK+T + L ++P+ +G++ +G N+ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
V + + Q MT+ + + G E R+EKA +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKALEL----- 113
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
LK++GL+ DE+ SGG ++RV +
Sbjct: 114 ----------------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE + LD + + K+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISG 932
VS R G A++G +G+GK+TL +LAG T G I + + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 933 -YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ + N +P + + + L LRL ++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRIGQIL--DFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 883 VLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISG---YPKKQETFA--RISGYC 934
+ ALMG SG GK+TL+ + L + G++R+ G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE--LKP------LRQS 986
Q P +T+Y+++ + ++L V S+ +E+ E VE LK ++
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSK------KELDERVEWALKKAALWDEVKDR 142
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
L P LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 143 LNDYPS--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEY 199
Query: 1047 TVVCTIHQPS----IDIFEAFDELFLMKRGGREVYVGP 1080
T+V H P+ + + AF L+L G+ + VGP
Sbjct: 200 TIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-06
Identities = 62/218 (28%), Positives = 98/218 (44%), Gaps = 37/218 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG---YITGDIRISGYPKKQET 926
L+G + PG + AL+G +GAGK+T+M VL G + G Y+ ++ +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 927 FARISGYCEQNDIHS-----PFVTVYESLFY-----SAWLRLPPEVNSETRKMFIEEVME 976
A I IH P +T+ E++F + + R+ + +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 977 LVELKPLRQS--LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
L L S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
R +R GR +V H+ +IFE D++ + + G
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 27/169 (15%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISG---YPKKQETFA 928
V+ P +TA +G SG GK+T++ L G + G++ + G Y + A
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 929 --RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-- 984
R G Q P +++ +++ A L+L N K ++E++E K LR
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVV--AGLKL----NGVRNKKDLDELVE----KSLRGA 132
Query: 985 ------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 133 NLWNEVKDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 64/256 (25%), Positives = 105/256 (41%), Gaps = 62/256 (24%)
Query: 843 SLTFDEV--VYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMD 900
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 901 VLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958
+ + G IT I+GY ET G + V++
Sbjct: 52 HFNALLKPSSGTIT----IAGYHITPET-----GNKNLKKLRKKVSLVFQF--------- 93
Query: 959 PPEVNSETRKMFIEEVMELVELKPLR----------QSLVGLPGVNGLSTE--------- 999
PE ++F V++ VE P ++L L V GLS +
Sbjct: 94 -PEA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFEL 146
Query: 1000 ---QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD 206
Query: 1057 IDIFEAFDELFLMKRG 1072
D+ E D++ +++ G
Sbjct: 207 -DVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 889 GVSGAGKTTLMDVLAGRK---TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945
G SG GK+TL+ ++AG + +G G+ R++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL--RQSLVGLPGVNGLSTEQRKR 1003
V E++ S L+L E + + +V E+++L L R+ LS QR+R
Sbjct: 92 VAENM--SFGLKLAGAKKEEINQR-VNQVAEVLQLAHLLDRKP-------KALSGGQRQR 141
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
+ I LVA PS+ +DEP S LDA A + MR
Sbjct: 142 VAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-------YPKKQETFA--RISGYCEQN 937
L+G SGAGK++L+ VL + +G + I+G P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P +TV E+L + P V ++ + +L++ L+ P LS
Sbjct: 91 YNLWPHLTVQENL-----IEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLS 143
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 50/172 (29%), Positives = 75/172 (43%), Gaps = 22/172 (12%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPKKQ 924
D L ++G+S R G L+G SG+GK+TL G I G+IR G
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 925 ETFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRL-PPEVNSETRKMFIEEVM 975
+ + + + F Y SL LR+ P++++ R + E +
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E V L P + P + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EEVGLDP--ATRNRYP--HEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 57/219 (26%), Positives = 99/219 (45%), Gaps = 41/219 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYITGDIRISGYPKK 923
+L V +PG + G +G+GK++L +D+ G+ + I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL- 90
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLR--LPPEVNSETRKMFIEEVMELVELK 981
+R+S + + + + +S +R L PE +++ E +E+ +LK
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLK 136
Query: 982 PLRQSLVGLPGVNGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
+ +SL G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + V T RTVV H+ S I +A D + ++ RG
Sbjct: 195 LQKVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 61/250 (24%), Positives = 96/250 (38%), Gaps = 57/250 (22%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
+L D+S VK G + LGP +GKTT + + G + P SG +T++G + +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R A I + +T RE L AR G+
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKR 106
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
ID L V+GL A V G S G K+R+ ++G
Sbjct: 107 IDEV------------------LDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLG 143
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS--LLQPAPETYNLFDDIIL 397
P L L +DE + GLD ++ ++ T +IS LL E + D I +
Sbjct: 144 NPDL-LILDEPTNGLDPDGIKELRE-LILSLRDQGITVLISSHLLS---EIQKVADRIGI 198
Query: 398 LSDGQIVYQG 407
++ G+++ +G
Sbjct: 199 INKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 68/259 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L+DVS + G L GP +GK+TLL + G+ P+ G++ NGH++ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
++ + D + + TV E +A R G R E+ RR
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGE 336
L ++GL + R +SGG+++RV
Sbjct: 122 -----------------------LDLVGL--------KHKARALPSQLSGGEQQRVAIAR 150
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHIN-SGTAVISLLQPAPETYNLFDD- 394
+V L DE + LD +++I+ F++ IN GT V+ A L +
Sbjct: 151 AIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRM 203
Query: 395 ---IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 204 RHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 53/195 (27%), Positives = 75/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++ D+S + G LLGP +GK+T+ L G + P G++T + E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ Q DN E TVRE L R G +S RE A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+ L+ AD V +SGG K+R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 3e-06
Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGDIRISGYPKKQE- 925
VS F +TA++G SG GK+T++ + + R TG + D I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 926 -TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-KPL 983
+ R G Q P +++Y+++ A +L VN +E ++ V L +
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEV 138
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ L LS Q++RL IA + P +I MDEP S LD
Sbjct: 139 KDRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 12/102 (11%)
Query: 975 MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
+E VE+ R + LP S ++RL IA LV +P ++FMDEPT GLD A +
Sbjct: 135 LERVEIDAAR--IDDLPTT--FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 1035 MRTVRNTV-DTGRTVVCTIHQPSIDIFEA---FDELFLMKRG 1072
+ +R V + G VV H D+ A L +MK+G
Sbjct: 191 LDLLRGLVRELGLAVVIVTH----DLAVARLLAHRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISG---YPKKQETFA--RISGYCE 935
+TAL+G SG GK+T + L + I G++ + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 936 QNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP---------LRQ 985
Q +PF +++Y+++ Y P ++ K +++++E K L++
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
S + L G Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSG------GQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (118), Expect = 3e-06
Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 11/188 (5%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-ITGDIRISGYP----KK 923
+L+ VS F +T+LMG +G+GKTT + L K GY +GD+ + G +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
F R G Q P + L +L P E R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDAV 153
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+ D
Sbjct: 154 KDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD 211
Query: 1044 TGRTVVCT 1051
++ T
Sbjct: 212 RLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 68/250 (27%), Positives = 102/250 (40%), Gaps = 66/250 (26%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTAAYI 231
G L LLGP +GKTTLL A+ G + P+ +KV+G G +VP+R
Sbjct: 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR----- 57
Query: 232 SQH----DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
H D I +V T+ +S R G P + F
Sbjct: 58 --HEFAWDFPI---SVAHTV------------------MSGRTGHIGWLRRPCVADF--- 91
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA--- 344
L+ +GL AD VG+ +SGGQ++RV +V ALA
Sbjct: 92 ---------AAVRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRP 132
Query: 345 --LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE TGLD T + F + +GTA++ + D ++LL +G+
Sbjct: 133 SVLLLDEPFTGLDMPTQELLTELFIE--LAGAGTAILMTTHDLAQAMATCDRVVLL-NGR 189
Query: 403 IVYQG-PREL 411
++ G P++L
Sbjct: 190 VIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 38/230 (16%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPK 922
P + L VS G A++G +G+GK+T+ +L G + G +I+I G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITI 73
Query: 923 KQETFARIS---GYCEQN-DIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
+E I G QN D + F+ TV + + + + V + K I+++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAK 128
Query: 977 LVELKPL--RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
V ++ ++ LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 129 KVGMEDYLDKEPQ-------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181
Query: 1035 ---MRTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELFLMKRGGREVYVG 1079
M +R T +T++ H D+ EA D++ + G+ + G
Sbjct: 182 KKIMVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 17/175 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
G + G +GAGKTTL+ VLAG +G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 941 SPFVTVYESLFYSAWL--RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 59/207 (28%), Positives = 96/207 (46%), Gaps = 41/207 (19%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI-- 939
G + L+G SG GKTT++ ++AG + G I I G + T I +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTHRSI----QQRDICM 82
Query: 940 --HS----PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
S P +++ E++ Y L++ V E RK ++E +ELV+L V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1048
+ +S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1049 VCTIHQPSIDIFEAF---DELFLMKRG 1072
+ H S EAF D + +M +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 70/258 (27%), Positives = 111/258 (43%), Gaps = 65/258 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV-------TYNGHNMD 220
LK ++ + G + LLGP +GK+TL L G L P+ SG V Y+ ++
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLL 74
Query: 221 EFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
E +T + Q+ D+ + TV E +AF G+ E+ +R K A
Sbjct: 75 EV--RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA------ 121
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMM 338
+KA EG E ++ +SGGQKKRV G +
Sbjct: 122 -----LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILA 153
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCF----KQNIHINSGTAVISLLQPAPETYNLFDD 394
+ P + + +DE ++GLD QI+ K+ I I T + L P Y D
Sbjct: 154 MKPEI-IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DK 206
Query: 395 IILLSDGQIVYQG-PREL 411
+ ++SDG+I+ +G P+E+
Sbjct: 207 VYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 53/237 (22%), Positives = 92/237 (38%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG P + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEAN 296
++VR L RY M +R E
Sbjct: 86 LFPHLSVRGNL-----------RYGM-----KR--------------------ARPSERR 109
Query: 297 VITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGG+K+RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVL 413
++I+ + + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILP-YLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 48/234 (20%), Positives = 89/234 (38%), Gaps = 44/234 (18%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQ 233
G +T ++GP SGK+TLL +AG P SGRV NG ++ P +R + + Q
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
+N +TV + + G+ ++ E R+ + K
Sbjct: 78 ENNLFAHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEK------- 123
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353
+ +SGG+++RV ++V L +DE
Sbjct: 124 -------------------------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAA 158
Query: 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
LD + ++++ +H + V+ + + L ++ L +G+I QG
Sbjct: 159 LDPALRAEMLDLVLD-LHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 47/181 (25%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234
V G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEE 294
+++ E L F G RR K G
Sbjct: 91 PGLKADLSTLENLHFLCGLHG------------RRAK-----------------QMPGSA 121
Query: 295 ANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGL 354
L ++GL DT+V R +S GQKKR+ + + PA +DE L
Sbjct: 122 --------LAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 355 D 355
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 59/283 (20%), Positives = 101/283 (35%), Gaps = 93/283 (32%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN----- 218
L L +VS + G ++G SGKTT + L L P +G + + +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKK 75
Query: 219 --------MDEFVPERTAA----YISQHDNHIG-----------EMTVRETLAFAARCQG 255
+++ V ++T I + +G E T+ + + F G
Sbjct: 76 KTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG 135
Query: 256 VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315
V EEA Y++++GLD
Sbjct: 136 V----------------------------------SKEEAKKRAAKYIELVGLDE----- 156
Query: 316 VGDEMRR---GVSGGQKKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371
++R +SGGQK+RV G + + P L DE + GLD +I+ F N++
Sbjct: 157 --SYLQRSPFELSGGQKRRVALAGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLN 212
Query: 372 INSGTAVISLLQPAPETYNLFDDI-------ILLSDGQIVYQG 407
T ++ T++L D++ I DG+I+ G
Sbjct: 213 KQGKTIILV-------THDL-DNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 52/196 (26%), Positives = 88/196 (44%), Gaps = 28/196 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
LN ++ +TAL+G SG GK+T + D++ G K I G++ G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYS 78
Query: 925 ETF-----ARISGYCEQNDIHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
F R G Q +PF+ ++Y+++ Y P+++ K ++E++E
Sbjct: 79 NNFDILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQS 130
Query: 979 ELKP-LRQSLVGLPGVNGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
K L + N LS Q++RL IA L P++I MDEPTS LD + +
Sbjct: 131 LKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190
Query: 1036 RTVRNTVDTGRTVVCT 1051
+ N ++ ++ T
Sbjct: 191 ELIINLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 5e-06
Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 24/193 (12%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQETF 927
+LN +S + R G A+ G SG GK+TL+ ++A T G + + +S K E +
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL--KPEAY 75
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET-RKMFIEEVMELVELKPLRQS 986
+ YC Q TV ++L + +R N R ++ L+ L S
Sbjct: 76 RQQVSYCAQTPALFG-DTVEDNLIFPWQIR-----NRRPDRAAALD----LLARFALPDS 125
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA----AIVMRTVRNTV 1042
++ + LS +++R+ + L P I+ +DE TS LD ++ R VR
Sbjct: 126 ILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR--- 181
Query: 1043 DTGRTVVCTIHQP 1055
+ V+ H
Sbjct: 182 EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 6e-06
Identities = 43/205 (20%), Positives = 83/205 (40%), Gaps = 48/205 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
L D++ + ++T L+GP GK+T L L L ++K+ G V +G N+ D
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + E+ D
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL---------------DKI 123
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEM 337
++ +K A+ E V D++++ +SGGQ++R+
Sbjct: 124 VEWALKKAALWDE----------------------VKDDLKKSALKLSGGQQQRLCIART 161
Query: 338 MVGPALALFMDEISTGLDSSTTFQI 362
+ + MDE ++ LD +T +I
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 40/185 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISG---YP 921
L +S +TA +G SG GK+TL+ D++ + I G+IR+ G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 922 KKQE--TFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
KK + R G Q +PF ++YE++ Y LRL N ++E +E
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRV----LDEAVERS 148
Query: 979 --------ELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
E+K L ++ GL G Q++RL IA + P ++ +DEPTS LD
Sbjct: 149 LRGAALWDEVKDRLHENAFGLSG------GQQQRLVIARAIAIEPEVLLLDEPTSALDPI 202
Query: 1030 AAAIV 1034
+ +
Sbjct: 203 STLKI 207
|
Length = 272 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 6e-06
Identities = 51/172 (29%), Positives = 75/172 (43%), Gaps = 28/172 (16%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGDIRISGYPKKQE 925
V++ +S RPG L+G SG+GK+T L+ ++ + G+I G P
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHN- 351
Query: 926 TFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRL-PPEVNSETRKMFIEEVME 976
R ++ I F SL LR+ P +++ R+ + VME
Sbjct: 352 -LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVME 410
Query: 977 LVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
V L P R P S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 411 EVGLDPETRHRY---PA--EFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 7e-06
Identities = 47/183 (25%), Positives = 87/183 (47%), Gaps = 18/183 (9%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDI 939
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 940 HSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIE--EVMELVELKPL-RQSLVGLPGV 993
P++ TV E++ + + N + K + + ++L P Q+ +G G+
Sbjct: 86 QKPWLLNATVEENITFGS------PFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRTVVCT 1051
N LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT+V
Sbjct: 140 N-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 1052 IHQ 1054
H+
Sbjct: 199 THK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 7e-06
Identities = 41/165 (24%), Positives = 58/165 (35%), Gaps = 59/165 (35%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
++GVS + + G L+G SG GK+TL ++ G T G I + K T
Sbjct: 29 VDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL-------FEGKDITKLS 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL------ 983
E R+ + E++E V L
Sbjct: 82 ---------------------------------KEERRER-VLELLEKVGLPEEFLYRYP 107
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ LS QR+R+ IA L NP +I DEP S LD
Sbjct: 108 HE----------LSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 34/195 (17%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYITGDIRISGY--PKKQETFARIS 931
R G + L+G +G GK+T + +LAG+ K D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 932 GYCEQNDIHSP-FVTVYESLFYSAWLRLPPEVNSETRKM--------FIEEVMELVELKP 982
+ I P +V +P V + ++ ++E+++ +EL+
Sbjct: 84 EG-DVKVIVKPQYVD-----------LIPKAVKGKVGELLKKKDERGKLDELVDQLELRH 131
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
+ ++ LS + +R+ IA L + F DEP+S LD + R +R
Sbjct: 132 VLDR-----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELA 186
Query: 1043 DTGRTVVCTIHQPSI 1057
+ V+ H ++
Sbjct: 187 EDDNYVLVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 7e-06
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 16/210 (7%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYITGDIRISGYPKKQET 926
L+ ++ + + G + AL+G SG+GK+ ++ +L T +G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 927 F-ARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R QN + P T+ + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G ++ H + + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 7e-06
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ + G ++G +G+GK+TL L G R G + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 930 ISGYCEQNDIHSPFV--TVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ G QN + FV TV E L F L LPP E RK ++ + + L+ R
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKR-VDRALAEIGLEKYRHR 132
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 133 -----SPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T+V H +++ D + +M RG
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-06
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 19/190 (10%)
Query: 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRI---SGYPKKQET 926
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 927 FARISGYCEQNDIHSPF-----VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
A I+ N F + + SL + + + E EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 982 --PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ Q++ L G N Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSGGN-----QQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1040 NTVDTGRTVV 1049
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 8e-06
Identities = 50/197 (25%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFARISGYCEQ 936
RPG + ++G +G GK+T + +LAG G Y P E R G Q
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRY-------EDPPSWDEVIKRFRGTELQ 150
Query: 937 NDIHSPFVTVYESLFYSAWLR----------LPPEVNSETRKM--------FIEEVMELV 978
N Y Y LR +P V + ++ +EV+E +
Sbjct: 151 N---------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERL 201
Query: 979 ELKPL--RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036
L+ + R V+ LS + +R+ IA L+ + + F DEP+S LD R R
Sbjct: 202 GLENVLDRD-------VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAAR 254
Query: 1037 TVRNTVDTGRTVVCTIH 1053
+R + G+ V+ H
Sbjct: 255 VIRELAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 8e-06
Identities = 66/267 (24%), Positives = 115/267 (43%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-DEFVP-- 224
L +V+ ++ G L+G SGK+TL+ L G L P+ SG++ +G ++ D+ V
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 225 --ERTAAYISQHDNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ + Q+ + + E T+ + +AF G+ E+ R K A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
+ ++GLD + D+ +SGGQK+RV ++
Sbjct: 127 ---------------------MNIVGLDY--EDY-KDKSPFELSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L +DE + GLD +I+N K +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIK-ELHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-06
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 50/253 (19%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
ILK +S ++ G ++GP SGK+TL L G P SG V +G ++ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP---TSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
Q HIG + Q V L + + E A + D + ++
Sbjct: 407 ------QLGRHIGYLP-----------QDV-----ELFDGTIAENIARFGEEADPEKVIE 444
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PALAL 345
AA + + +L L DT +G+ +SGGQ++R+ + G P L +
Sbjct: 445 AA--------RLAGVHELILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL-V 494
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILLSD 400
+DE ++ LDS + GT V+ S L D I++L D
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILA-AKARGGTVVVIAHRPSALASV-------DKILVLQD 546
Query: 401 GQIVYQGPRELVL 413
G+I GPRE VL
Sbjct: 547 GRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 9e-06
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 11/162 (6%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETF 927
+LN +S G + AL+G SG+GKTTL+ ++AG +T G+I +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R G+ Q+ +TV++++ + L + P +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
P LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++ +S V G LLGP +GK+T+ + G P +G++T + VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ Q DN E TVRE L R G+ TR
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------- 147
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
E + L+ L+ AD V D +SGG K+R+T ++
Sbjct: 148 -------------EIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 47/239 (19%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L P SG V G ++ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R Y+ +H+ +M VRE L F + Y M +L ++ I
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQF------IAGIYGMKGQLLKQRVEEMI---------- 118
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
E + + + K+ L S G ++RV + ++ L
Sbjct: 119 -------ELVGLRPEQHKKIGQL----------------SKGYRQRVGLAQALIHDPKVL 155
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
+DE +TGLD + +I N K I +I E + D +I+++ G+IV
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L L +++ + G+LT+++G GK++LLLA+ G++ + G+V ++ N E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ A ++P
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTD------ACSLQP 121
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTG 335
D D+ F G++ T +G+ RG+ SGGQ++R+
Sbjct: 122 DIDLLPF-------GDQ-------------------TEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 26/212 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+ V+ RP + ALMG +GAGK+TL+ L G +K +G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 930 ISGYCEQNDI---HSPFVTVYE-SLFYSAWL-RLPPEVNSETRKMFIEEVMELVELKPLR 984
S +N I H V + S+ + WL R P T+ MF+++ + K +
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 985 QSL----VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
L V LS Q + + IA N I+ MDEPTS L + + +R
Sbjct: 120 DELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRK 179
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G +V H+ +IF+ DE+ +++ G
Sbjct: 180 LKERGCGIVYISHKME-EIFQLCDEITILRDG 210
|
Length = 491 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR-ISGYPKKQ 924
K+ L+ VS G + L+G +GAGKTTL+ L G R T G I D + I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-L 983
++ E + S +TV E+L + R F E + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1044 TGRTVVCTI 1052
R TI
Sbjct: 182 QLREQGMTI 190
|
Length = 237 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 25/184 (13%)
Query: 886 ALMGVSGAGKTTLMDVL--------AGRKTGG---YITGDI-RISGYPKKQETFARISGY 933
+MG SG+GK+TL+ VL + K G Y DI +I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR--KMFIEEVMELVELKPLRQSLVGLP 991
Q P +++Y+++ Y L E R K +EE + V L + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP----LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSP 150
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1051
+ LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V
Sbjct: 151 A-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIV 208
Query: 1052 IHQP 1055
H P
Sbjct: 209 SHNP 212
|
Length = 257 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 1e-05
Identities = 53/183 (28%), Positives = 80/183 (43%), Gaps = 46/183 (25%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFARI 930
+ G+ G L+G SG GK+TL+ ++AG + IT G+I I G R+
Sbjct: 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGG---------RV 67
Query: 931 SGYCE----------QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
E QN P ++V E++ Y +R P+ E R + E ++EL
Sbjct: 68 VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILEL 124
Query: 981 KPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAI 1033
+PL R+ LS QR+R+ + +V P++ DEP S LDA R
Sbjct: 125 EPLLDRKPRE----------LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ-- 172
Query: 1034 VMR 1036
MR
Sbjct: 173 -MR 174
|
Length = 356 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 32/162 (19%)
Query: 884 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YITGDIRISGYPKKQETFARISGY 933
+TA++G SG GK+T +++++ KT G Y +I Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 934 CEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG--- 989
++ + PF ++Y+++ Y P+++ K ++E++E K LR + +
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVE----KSLRGAAIWDEL 157
Query: 990 ----LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 158 KDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 41/165 (24%), Positives = 79/165 (47%), Gaps = 14/165 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYITGDIRISGYP--KKQET 926
L ++ + +TA++G SG GK+T ++++ +TG++ +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 927 FARIS---GYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ G Q +PF ++++++ Y R+ N + + +E+ ++ V L
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+ + + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 46/217 (21%), Positives = 68/217 (31%), Gaps = 52/217 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+ +S + G + GP SGKTTLL LAG P +GRV NG +D
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R Y+ ++V E L F E L
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALAR----------------- 112
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+GL+ D V +S GQ++RV +++
Sbjct: 113 -----------------------VGLNGFEDRPVAQ-----LSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
+DE +T LD + + H G V+
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAG--HCARGGMVV 179
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 47/191 (24%), Positives = 88/191 (46%), Gaps = 12/191 (6%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ 924
+L+ + G + ++G SG+GK+TL+ + L +G I ++++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 925 ETFARI-SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
E R +G Q P +T E++ + P V +++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ P + LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1044 TGRTVVCTIHQ 1054
G T+V H+
Sbjct: 185 EGMTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 49/210 (23%), Positives = 85/210 (40%), Gaps = 50/210 (23%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--TGDIRISGYPK 922
PE + +L +S + G AL+G SG+GK+TL+ +L TG G+I + G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVP- 65
Query: 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+S + + S + + P + T
Sbjct: 66 -------VSDL--EKALSSLISVLNQR----------PYLFDTT---------------- 90
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
LR +L G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 91 LRNNL-GRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-V 144
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+T++ H + E D++ ++ G
Sbjct: 145 LKDKTLIWITHH--LTGIEHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 42/170 (24%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYI--------TGDIRISGYPKKQETFA 928
+TA++G SG GKTTL+ D + G + G I + ++ Y KK
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKK----- 85
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G Q P +++Y+++ + P ++ K ++ ++E + L+++ +
Sbjct: 86 --VGMVFQKPTPFP-MSIYDNVAFG------PRIHGVKSKHKLDRIVE----ESLKKAAL 132
Query: 989 --------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
PG LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 133 WDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 48/205 (23%), Positives = 91/205 (44%), Gaps = 38/205 (18%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ L DP+ G++ +G ++
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
N + ++R+++A + G+ R S RE + + +A
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVYEA 444
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFM 347
A +A D+ LK DT+VG+ R +SGG+++R+ ++ A L +
Sbjct: 445 A-----KAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILVL 495
Query: 348 DEISTGLDSSTTFQI---VNCFKQN 369
DE ++ LD T ++ ++ ++N
Sbjct: 496 DEATSALDVETEARVKNAIDALRKN 520
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 49/175 (28%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YITGDIRISGY 920
PE + L+GVS G A++G SG GK+TL + + TGG Y G +
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKA 82
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESL----FYSAWLRLPPEVNSE----TRKMFIE 972
+ + R I F Y SL L P +N+ R+
Sbjct: 83 DPEAQKLLR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKAL 135
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+M V L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 136 AMMAKVGLRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 29/153 (18%)
Query: 885 TALMGVSGAGKTTLMDVLAG--RKTGGYIT--------GDIRISGYPKKQETFARISGYC 934
TA+ G SGAGKT+L++ ++G R G I + I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994
Q+ P V +L Y + F ++++ L+ ++PL L PG
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYPG-- 127
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 38/216 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G++ PG + AL+G SG+GK+T+ +L + TGG + D G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD----GVPLVQ----- 547
Query: 930 ISGYCEQNDIHSPFVTV-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+ + +H V E + +S +R + EE+M + ++
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 989 GLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
P NG TE Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 602 EFP--NGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQL 655
Query: 1038 VRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + RTV+ H+ S E D++ ++K+G
Sbjct: 656 LQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 46/183 (25%), Positives = 73/183 (39%), Gaps = 44/183 (24%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE--RTAAYIS 232
V+PG LLG +GKTT L G + SG T G ++ + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGD---TTVTSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEG 292
Q D +T RE L AR +GV
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV----------------------------------PA 2044
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEIST 352
EE + ++ ++ LGL + AD + G SGG K++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 3e-05
Identities = 47/214 (21%), Positives = 83/214 (38%), Gaps = 21/214 (9%)
Query: 847 DEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-R 905
EVV V+ L + + VS R G + + GV+G G++ L++ ++G R
Sbjct: 254 GEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR 308
Query: 906 KTGGYITGDIRISGYPKKQETFARIS-----GYCEQNDIH---SPFVTVYESLFYSAWLR 957
K +G I ++G R Y ++ +++ E+L
Sbjct: 309 KP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHD 364
Query: 958 LPPEVNSE-TRKMFIEE-VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015
P + I + EL+E +R P LS +++L +A EL P
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELARRPD 423
Query: 1016 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
++ +PT GLD A + + D G+ V+
Sbjct: 424 LLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 58/247 (23%), Positives = 92/247 (37%), Gaps = 59/247 (23%)
Query: 177 PGR-LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM-----DEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG P GR+ NG + F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
Y+ Q TVR L + M +
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVGPALALFM 347
D + +LG++ D G +SGG+K+RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
DE LD +I+ + + + ++ + E L D +++L +G++ G
Sbjct: 153 DEPLASLDLPRKREILP-YLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASG 211
Query: 408 PRELVLE 414
P E V
Sbjct: 212 PLEEVWG 218
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 323 GVSGGQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381
G SGG+KKR ++++ P LA+ DE +GLD + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYNLFDDII-----LLSDGQIVYQGPRELVLEFFE 417
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 57/259 (22%), Positives = 97/259 (37%), Gaps = 68/259 (26%)
Query: 171 VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA-- 228
+S V+ G + L+GP +GK+TLL +AG L SG + + G ++ + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA 287
AY+SQ M V ++ LT L + +K
Sbjct: 71 RAYLSQQQTPPFAMPV----------------FQYLT-LHQPDKTR-------------- 99
Query: 288 ASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGG--QKKRVTTGEMMVGPA 342
A+ + ++ + D++ R V SGG Q+ R+ + V P
Sbjct: 100 ---TEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
+ L +DE LD + ++++ Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 54/248 (21%), Positives = 93/248 (37%), Gaps = 64/248 (25%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL ++S V+ G + GP GK+TLL +A + P+ SG + + G ++ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD--I 281
+ +Y +Q G+ TV + L F + +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVG 340
D+ + A + IT+ +SGG+K+R+ +
Sbjct: 115 DLLARFALPDSILTKNITE-----------------------LSGGEKQRIALIRNLQFM 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCF-----KQNIHINSGTAVISLLQPAPETYNLFDDI 395
P + L +DEI++ LD S I +QN+ AV+ + + D +
Sbjct: 152 PKI-LLLDEITSALDESNKRNIEEMIHRYVREQNV------AVLWITHDKDQAIRHADKV 204
Query: 396 ILLSDGQI 403
I L G
Sbjct: 205 ITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+LK++S +K G LLG SGK+TLL L G L P G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + P+ SG + + G ++ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAF 249
+Y +Q G+ TV + L F
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 3e-05
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L P + + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAFAARCQ 254
GE+ +R LA A + +
Sbjct: 61 GSGELRLRLALALARKLK 78
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 42/167 (25%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQETFA----RISGYCEQND 938
+TAL+G SG GK+T + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 939 IHSPFV-TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPLRQSLVGLPG 992
+ FV ++YE++ Y+ L + N + + + + ++ V L L+Q+ + L G
Sbjct: 90 V---FVKSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSG 145
Query: 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 146 ------GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 4e-05
Identities = 57/247 (23%), Positives = 95/247 (38%), Gaps = 41/247 (16%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHN---MDE 221
+L V+ + +T L+GP SGK+TLL +L P +VSG V +G + MD
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
R + Q N I +++ E +A + + + EL R + A
Sbjct: 78 IELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK---ELQERVRWA-------- 126
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
++ A E + LD A + SGGQ++R+ +
Sbjct: 127 ---LEKAQLWDEVKD----------RLDAPAGKL---------SGGQQQRLCIARALAFQ 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401
L DE + LD T +I + F + + ++ + + + D + L G
Sbjct: 165 PEVLLADEPTANLDPENTAKIESLF---LELKKDMTIVLVTHFPQQAARISDYVAFLYKG 221
Query: 402 QIVYQGP 408
QIV GP
Sbjct: 222 QIVEWGP 228
|
Length = 250 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTI 1052
N LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++
Sbjct: 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISIT 200
Query: 1053 HQPSIDIFEAF--DELFLMKRGGREVY 1077
H D+ EA D + +M +G VY
Sbjct: 201 H----DLSEAMEADHVIVMNKG--TVY 221
|
Length = 269 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 16/131 (12%)
Query: 133 ASKALPSFTKFFTTIFEDLLN-YLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGK 191
SK + + ++ + L + LKD+S + G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 192 TTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251
+TLL +AG P+ SG+V G + A I E+T RE +
Sbjct: 67 STLLKLIAGIYKPT---SGKVKVTG---------KVAPLIELGAGFDPELTGRENIYLRG 114
Query: 252 RCQGVGTRYEM 262
G+ TR E+
Sbjct: 115 LILGL-TRKEI 124
|
Length = 249 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 64/227 (28%), Positives = 105/227 (46%), Gaps = 45/227 (19%)
Query: 872 LNGVSGAFRPG--VLT------------ALMGVSGAGKTTLMDVLAGRKTGGYIT---GD 914
++ VS A+R VL AL+G +G+GK+TL +L G Y G+
Sbjct: 343 IDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMG-----YYPLTEGE 397
Query: 915 IRISGYPKKQETFA--RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
IR+ G P + + R Q D P V + ++ A + L ++ SE + +
Sbjct: 398 IRLDGRPLSSLSHSVLRQGVAMVQQD---P-VVLADTFL--ANVTLGRDI-SEEQ---VW 447
Query: 973 EVMELVELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ +E V+L L +SL +G G N LS Q++ L +A LV P I+ +DE T+
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQG-NNLSVGQKQLLALARVLVQTPQILILDEATAN 506
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+D+ + + + V T+V H+ S I EA D + ++ RG
Sbjct: 507 IDSGTEQAIQQALA-AVREHTTLVVIAHRLST-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 76/279 (27%), Positives = 117/279 (41%), Gaps = 60/279 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTYNGHNMDEFVP 224
L DV+ VK G ++LG SGK+T+ + L PS + V G T + N+ +
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI-- 83
Query: 225 ERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
A + Q+ DN I V E +AF E L GI P
Sbjct: 84 RNKAGMVFQNPDNQIVATIVEEDVAFGP---------ENL----------GIPP------ 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG----VSGGQKKRVT-TGEMM 338
EE D LK +G+ E RR +SGGQK+RV G +
Sbjct: 119 ---------EEIRERVDESLKKVGMY---------EYRRHAPHLLSGGQKQRVAIAGILA 160
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
+ P +F DE + LD S ++VN K+ ++ G +I + E D II++
Sbjct: 161 MRPECIIF-DEPTAMLDPSGRREVVNTIKE-LNKKYGITIILITHYMEEAVEA-DRIIVM 217
Query: 399 SDGQIVYQG-PRELV--LEFFESMGFKCPKRKGVADFLQ 434
G++V +G P+E+ +E + +G P+ +A L+
Sbjct: 218 DSGKVVMEGTPKEIFKEVEMMKKIGLDVPQVTELAYELK 256
|
Length = 280 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-05
Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 38/160 (23%)
Query: 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS-- 941
LT L+G SG GKTT++ ++AG +T +G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 942 ------PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL------KPLRQSLVG 989
P +TV+E++ + ++ P R + E + +V+L KP +
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKPHQ----- 144
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 ------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ 924
+ LN VS G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 925 ETFAR--ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
T AR I + ++ S TV+ ++ LP E+++ + +V EL+ L
Sbjct: 77 LTKARRQIGMIFQHFNLLSS-RTVFGNV------ALPLELDNTPKDEIKRKVTELLALVG 129
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 130 LGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 5e-05
Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEFV 223
ILKD+S + G + ++GP +GK+TL+ + +DP+ G + +G +D
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
E NV +YYL ++GL+ T + SGG+ +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGLNKEYATRDVKNL----SGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 35/198 (17%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP-KKQ-E 925
+L +G+S G L + G +GAGKT+L+ +LAG R G++ G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIRRQRD 70
Query: 926 TFARISGYC-EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ + Y Q I +T E+L + RL + E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENL--RFYQRLHGPGDDEA----------------LW 111
Query: 985 QSL--VGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1038 VRNTVDTGRTVVCTIHQP 1055
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 46/187 (24%), Positives = 70/187 (37%), Gaps = 58/187 (31%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQETFA 928
+ G+ F +TAL+G SG+GK+T + L +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 929 RISGYCEQNDIHSPFVTVYE-----------------SLFYSAWLRLPPEVNSETRKMFI 971
DI+ + VYE S++ + L E K +
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFAL--ERAGVKDKKVL 136
Query: 972 EEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+E++E L+Q+ + L LS Q++RL IA + P I+ MD
Sbjct: 137 DEIVE----TSLKQAALWDQVKDDLHKSAL----TLSGGQQQRLCIARAIAVKPDILLMD 188
Query: 1021 EPTSGLD 1027
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 55/206 (26%)
Query: 857 QQMKLQGVPEDKLVLLNGVS---GAFRP----------GVLTALMGVSGAGKTTLM---- 899
+ + ++ ++ L V+ G F G +TAL+G SG GK+T++
Sbjct: 1 SIKTNKKISKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60
Query: 900 ---DVLAGRKTGGYITGDIRISGYPKK---QETFARISGYCEQNDIHSPF-VTVYESLFY 952
D++ G G + D Y + E RI +Q + PF ++YE++ +
Sbjct: 61 RMNDLIEGCSLKGRVLFD-GTDLYDPRVDPVEVRRRIGMVFQQPN---PFPKSIYENIAF 116
Query: 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQR 1001
A +N T M ELVE + LR++ V G LS Q+
Sbjct: 117 GA------RINGYTGDM-----DELVE-RSLRKAAVWDECKDKLNESG----YSLSGGQQ 160
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLD 1027
+RL IA + P +I MDEP S LD
Sbjct: 161 QRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
T LKD+S VK G LLGP GKTTLL +AG + +G + G
Sbjct: 16 AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGG 65
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 55/248 (22%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
L ++ V+PG L+GP +GK+TL L DP SGR+ +G ++ + P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAEL 412
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
R + D + +V E + + +PD
Sbjct: 413 RARMALVPQDPVLFAASVMENIRYG-------------------------RPD------- 440
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPAL 343
A E E A + + L DT +G+ RGV SGGQ++R+ ++ A
Sbjct: 441 -ATDEEVEAAARAAHAHEFISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAILKDAP 496
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNLFDDIILLS 399
L +DE ++ LD+ + Q+V + + T +I + + A D I+++
Sbjct: 497 ILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRLATVLKA-------DRIVVMD 548
Query: 400 DGQIVYQG 407
G+IV QG
Sbjct: 549 QGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
+ LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1054 QPSI 1057
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-05
Identities = 42/203 (20%), Positives = 74/203 (36%), Gaps = 60/203 (29%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
++ +LKD+S + G ++GP +GK+TLL LAG+L P +SG V
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP---LSGTVKV- 381
Query: 216 GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
G + Y QH + + +T+
Sbjct: 382 GETVK-------IGYFDQHRDELDPD---KTV---------------------------- 403
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRV 332
++ + E+ + YL G G++ + V SGG+K R+
Sbjct: 404 -----LEELSEGFPDGDEQ--EVRA-YLGRFGFT-------GEDQEKPVGVLSGGEKARL 448
Query: 333 TTGEMMVGPALALFMDEISTGLD 355
++++ P L +DE + LD
Sbjct: 449 LLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 34/208 (16%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL-------AGR---KTGGYITGDIRI 917
+L +L VS G AL G SGAGK+TL+ L +GR + G +
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 918 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLFYSAWLRLPPEVNSETRKM 969
S +++ GY Q P V+ V E L P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 970 FIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
EL+ + + L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-05
Identities = 63/248 (25%), Positives = 96/248 (38%), Gaps = 41/248 (16%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+L +++ +KPG ++GP SGK+TL L P G+V +G ++ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH---GQVLVDGVDLAIADP-- 526
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
A+ R GV + +L S R+ A P + +
Sbjct: 527 ---------------------AWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIH 565
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
AA G + L +T VG E +SGGQ++R+ +VG L
Sbjct: 566 AAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRILI 616
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
DE ++ LD + I+ N+ I G VI + T D II+L GQI
Sbjct: 617 FDEATSALDYESEALIMR----NMREICRGRTVIIIAHRL-STVRACDRIIVLEKGQIAE 671
Query: 406 QGPRELVL 413
G E +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 45/197 (22%), Positives = 74/197 (37%), Gaps = 48/197 (24%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK + VK G + +++GP SGK+TLL + +P SG + +G + +
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKK 69
Query: 225 E-----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + Q N +TV E + A ++ KA
Sbjct: 70 NINELRQKVGMVFQQFNLFPHLTVLENITLA------------PIKVKGMSKA------- 110
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MM 338
EA L+ +GL AD +SGGQ++RV +
Sbjct: 111 --------------EAEERALELLEKVGLADKADAYPAQ-----LSGGQQQRVAIARALA 151
Query: 339 VGPALALFMDEISTGLD 355
+ P + LF DE ++ LD
Sbjct: 152 MNPKVMLF-DEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 995 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1050
LS +++ +A+ L + + +DE GLD R + + + G V+
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 1051 TIHQPSIDIFEAFDELFLMKRGGREVY 1077
H P ++ E D+L +K+ VY
Sbjct: 137 ITHLP--ELAELADKLIHIKKVITGVY 161
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 8e-05
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 33/197 (16%)
Query: 855 MPQQMKLQGVP-EDKLVLLNGVSGAFRPGVLTALMGVSGAGKT----TLMDVL-AG-RKT 907
MPQQ++L+ + + L++GVS + G + AL+G SG+GK+ + +L AG R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 908 GGYITGD-IRISGYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961
G + D ++ + A I S + N +H+ E+ L P +
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETC---LALGKPAD 114
Query: 962 VNSETRKMF---IEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018
+ T + +E +++L P +S +R+ IA+ L+ I
Sbjct: 115 DATLTAALEAVGLENAARVLKLYPFE-----------MSGGMLQRMMIALALLCEAPFII 163
Query: 1019 MDEPTSGLDARAAAIVM 1035
DEPT+ LD A A ++
Sbjct: 164 ADEPTTDLDVVAQARIL 180
|
Length = 254 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 53/234 (22%), Positives = 89/234 (38%), Gaps = 58/234 (24%)
Query: 849 VVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 908
V Y+ D+P +L VS + G ++G +GAGK+TL +LA +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 909 GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------FYSAWLRLPP 960
G I I G + P + SL +S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH--QPSIDIFEAFDELFLMKRG 1072
E T+ +D A++ +T+R T T++ H + ID +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLRTIID----YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-05
Identities = 54/187 (28%), Positives = 80/187 (42%), Gaps = 36/187 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQE--- 925
L GVS +TAL+G SG GK+T + L R I G + + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 926 --TFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFI---------EE 973
+ G Q+ +PF ++ E++ Y P + + + +
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYG------PRKHGDINTGLLARLLGRDDKDA 172
Query: 974 VMELVELKPLRQSLVGLPGVN--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
ELVE + LRQ+ + VN GLS Q++RL IA L +P +I MDEP S
Sbjct: 173 EDELVE-RSLRQAAL-WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA 230
Query: 1026 LDARAAA 1032
LD A +
Sbjct: 231 LDPIATS 237
|
Length = 305 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 50/225 (22%), Positives = 88/225 (39%), Gaps = 37/225 (16%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDI--RIS----- 918
+ K VL N +S G + ++G SGAGK+ LM VL G +G I ++
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 919 GYPKKQETFARISGYCEQN--DIHSPFVTVYESLFYSAWLRLP----------------- 959
GY ++ C F + + L R+
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 960 ------PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSI 1057
P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-05
Identities = 67/278 (24%), Positives = 107/278 (38%), Gaps = 60/278 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D++ + G L ++G GKT+L+ A+ G+L + S V G +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS--VVIRG----------S 680
Query: 228 AAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP-DPDIDVFMK 286
AY+ Q + I TVRE + F G+ +E R +A + D+D+
Sbjct: 681 VAYVPQV-SWIFNATVRENILF-------GSDFES----ERYWRAIDVTALQHDLDLLPG 728
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
TE E V +SGGQK+RV+ + +
Sbjct: 729 RDLTEIGERGV-------------------------NISGGQKQRVSMARAVYSNSDIYI 763
Query: 347 MDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405
D+ + LD+ Q+ + C K + + V + L P L D IIL+S+G I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 406 QGPRELVLEFFESMGF--KCPKRKGVADFLQEVTSKKD 441
+G E +S K + G D QEV + +
Sbjct: 820 EGTFA---ELSKSGSLFKKLMENAGKMDATQEVNTNDE 854
|
Length = 1495 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 9e-05
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR--ISGYCEQN 937
G A++G SGAGK+TL++++AG T +G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 938 DIHSPFVTVYE--SLFYSAWLRLPPE----VNSETRKMFIEEVMELVELKPLRQSLVGLP 991
++ +TV + L + L+L +++ R+M IE+++ R LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLA-------R-----LP 127
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 9e-05
Identities = 26/80 (32%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020
EV ++K+ I + + + K ++LVG + LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1021 EPTSGLDARAAAIVMRTVRN 1040
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 9e-05
Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 33/162 (20%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFA 928
+L+ VS +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 929 RISGYCEQN---DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
RI GY Q D P +TV + +LRL P +K I ++ V+
Sbjct: 68 RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPGT----KKEDILPALKRVQ----AG 111
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 112 HLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
K L +VS ++ G ++G SGK+TL LAG PS SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDG 68
|
Length = 252 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L+IL V +VK G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 225 ERTAAYISQH 234
E A ++H
Sbjct: 80 EARAKLRAKH 89
|
Length = 228 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-04
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 57/252 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
++++ S ++PG+ L+G SGK+T+ +AG P SG + ++G +E E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREV 550
Query: 227 TAAYISQHDNHIG--EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
A ++ D I E TVR+ L T + +L R K A I DV
Sbjct: 551 LANSVAMVDQDIFLFEGTVRDNLTLWDP-----TIPD--ADLVRACKDAAIH-----DVI 598
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG-PAL 343
+ G +A + E +SGGQ++R+ +V P++
Sbjct: 599 T--SRPGGYDAELA--------------------EGGANLSGGQRQRLEIARALVRNPSI 636
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI-----SLLQPAPETYNLFDDIILL 398
L +DE ++ LD T I N+ T +I S ++ D+II+L
Sbjct: 637 -LILDEATSALDPETEKIID----DNLRRRGCTCIIVAHRLSTIRDC-------DEIIVL 684
Query: 399 SDGQIVYQGPRE 410
G++V +G E
Sbjct: 685 ERGKVVQRGTHE 696
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 37/204 (18%), Positives = 59/204 (28%), Gaps = 69/204 (33%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
PG + ++G G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000
E + + L Q L+ + G S
Sbjct: 39 -----------------------------------EDILEEVLDQLLLIIVGGKKASGSG 63
Query: 1001 RKRLTIAVELV--ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTI 1052
RL +A+ L P ++ +DE TS LDA A+++ + TV+ T
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 1053 HQPSI----DIFEAFDELFLMKRG 1072
+ + FD ++
Sbjct: 124 NDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 44/177 (24%), Positives = 73/177 (41%), Gaps = 23/177 (12%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDV---LAGRKTGGYITGDIRISGYPKKQET 926
+L +S F G + ++G SGAGK+TL+ + L G + + I
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVID-- 74
Query: 927 FARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q P + TV +++ Y L+ V+ +E + +V L
Sbjct: 75 LRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD-------VEYYLSIVGL--- 120
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
V LS + +R++IA L NP ++ +DEPTS LD + I+ +
Sbjct: 121 -NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 1e-04
Identities = 48/202 (23%), Positives = 80/202 (39%), Gaps = 44/202 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
+K+V + G++T L+GP GK+T+L +L L + GRV ++G ++ D
Sbjct: 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N + ++ E +AF AR G + L E S R+ A
Sbjct: 89 PVEVRRRIGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELVERSLRKAAV------- 140
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
D C D + +E +SGGQ++R+ +
Sbjct: 141 ---------------------------WDECKDKL--NESGYSLSGGQQQRLCIARTIAI 171
Query: 341 PALALFMDEISTGLDSSTTFQI 362
+ MDE + LD +T +I
Sbjct: 172 EPEVILMDEPCSALDPISTLKI 193
|
Length = 269 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 49/161 (30%), Positives = 76/161 (47%), Gaps = 21/161 (13%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFARIS 931
VS G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 932 GYCEQNDIHSPFVTVYESL-FYSAWLRLPP-EVNSETRKMF-IEEVMELVELKPLRQSLV 988
Q+ P +TV +++ F +LP E+ S +M + + E + KP
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKP------ 147
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 -----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 62/277 (22%), Positives = 113/277 (40%), Gaps = 44/277 (15%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTL---LLALAGKLDPSLKVSGRVTYNGHNMDE 221
LT+L ++ V G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYH------ 66
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+P R + + H+ +M +G ++ + + P +
Sbjct: 67 -MPGRNGPLVPADEKHLRQMR-----------NKIGMVFQSFNLFPHKTVLDNVTEAPVL 114
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE-MMVG 340
+ M A E + L ++GL AD D M +SGGQ++RV + +
Sbjct: 115 VLGMARAEAEKRAMEL-----LDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
P + LF DE+++ LD +++N ++ + T ++ + D +
Sbjct: 165 PKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRVCFFDK 222
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV QG P E+ F+ PK + +FL +V
Sbjct: 223 GRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T+L +S G++T L+G SGK+TLL L PS G + + ++ + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R AY+ Q MTVRE +A RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVAIG--------RYPWHGALGR-------------- 119
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
F A + EEA + ++GL A +V +SGG+++R ++ +
Sbjct: 120 -FGAADREKVEEA-------ISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE ++ LD + ++ + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 62/253 (24%), Positives = 96/253 (37%), Gaps = 54/253 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGHNMDEFVP 224
LK +S + G T LLGP +GK+TLLL L G P +KV GR N N V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREV-NAENEKW-VR 78
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ D+ + TV + +AF G+ E+ RR + A
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA----------- 122
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPAL 343
LK + + D+ +S GQKKRV G + + P +
Sbjct: 123 ------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLAMDPDV 159
Query: 344 ALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
+ +DE LD T +I++ G VI D +I+L +
Sbjct: 160 -IVLDEPMAYLDPRGQETLMEILDRLHNQ-----GKTVIVATHDVDLAAEWADQVIVLKE 213
Query: 401 GQIVYQGPRELVL 413
G+++ +G + L+
Sbjct: 214 GRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-- 225
+ D S V+ G + +++G SGK+TL+ L ++P+ G + +G ++ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + + Q + TV E +AF QGV + R E+A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------KAEREERALEA----- 148
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
L+++GL+ AD + +SGG ++RV +
Sbjct: 149 ----------------------LELVGLEGYADKYPNE-----LSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
L MDE + LD ++ + + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 64/257 (24%), Positives = 104/257 (40%), Gaps = 72/257 (28%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
+LK +S +K G LLG GK+TLL L DP G + NG + ++ E
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY-SEA 410
Query: 226 --RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD-- 280
R A + +SQ H+ T+R+ L A P+
Sbjct: 411 ALRQAISVVSQR-VHLFSATLRDNLLLA-------------------------APNASDE 444
Query: 281 --IDVFMK---AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
I+V + E ++ GL + +G E R +SGG+++R+
Sbjct: 445 ALIEVLQQVGLEKLLEDDK------------GL----NAWLG-EGGRQLSGGEQRRLGIA 487
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL---- 391
++ A L +DE + GLD+ T QI+ + H + T ++ T+ L
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMI-------THRLTGLE 538
Query: 392 -FDDIILLSDGQIVYQG 407
FD I ++ +GQI+ QG
Sbjct: 539 QFDRICVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DEFVPERTAAY 230
+ G L + GP +GKT+LL LAG P +G V + G + DE+ + Y
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEY--HQDLLY 78
Query: 231 ISQHDNHI-GEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ H I E+T E L F R G G + L++
Sbjct: 79 LG-HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 44/237 (18%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P+ L V+ +PG + + G +G+GK+TL+ ++ ++ GDIR P +
Sbjct: 324 PQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTK 381
Query: 925 -------ETFARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEV 974
A +S +PF+ TV ++ A R P+ + IE V
Sbjct: 382 LQLDSWRSRLAVVS--------QTPFLFSDTVANNI---ALGR--PDATQQE----IEHV 424
Query: 975 MEL--VELKPLR-----QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L V LR + VG GV LS Q++R++IA L+ N I+ +D+ S +D
Sbjct: 425 ARLASVHDDILRLPQGYDTEVGERGVM-LSGGQKQRISIARALLLNAEILILDDALSAVD 483
Query: 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH 1084
R ++ +R + GRTV+ + H+ S + EA E+ +M+ G + G+H
Sbjct: 484 GRTEHQILHNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH----IAQRGNH 533
|
Length = 569 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 14/208 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFA 928
LN S F+ +T ++G +G+GK+T++ + G +TG I GD I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAW---LRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R+ + +I F LF + P E ++ ++V EL++L L +
Sbjct: 87 RL-----RKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPE 141
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1044
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 30/166 (18%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGG--YITGDIRISGYPKKQETFARISGYC 934
+TA +G SG GK+T + D++ G G Y G S E RI
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 935 EQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL--- 990
++ +PF +++++++ Y P N + +E+++E K L+ + +
Sbjct: 170 QKP---TPFEMSIFDNVAYG------PRNNGINDRKILEKIVE----KSLKSAALWDEVK 216
Query: 991 ----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
N LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 217 DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---------PKKQETFARISGYCEQN 937
L+G SGAGK++L+ VL + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P +TV ++L + P V ++ + +L+E L+ P LS
Sbjct: 91 YNLWPHLTVQQNL-----IEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLS 143
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 52/208 (25%), Positives = 78/208 (37%), Gaps = 43/208 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
L D+S V PG L +L+GP +GKTTL+ + GK P G V ++G D
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD-TD------- 69
Query: 228 AAYISQHDNH-IGEMTVRETLAFAARCQGVG------TRYEMLTELSRREKAAGIKPDPD 280
+++ H I G+G T +E LT E A
Sbjct: 70 ---LTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+F + EE I D L +GL D + +S GQK+ + G ++
Sbjct: 114 ASLFARL---RAEERRRI-DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQ 164
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQ 368
L +DE G+ + T + K
Sbjct: 165 DPKLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG---HNMDEF 222
T+L V V+ G L L+GP +GKTTLL A+ G L P+ +G V G +
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSAR 73
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R A + Q + E VR+ + R R++ TE R ++
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRAA----------VE 121
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
M+ +T +SGG+++RV +
Sbjct: 122 RAMERTGVAQFADRPVTS-----------------------LSGGERQRVLLARALAQAT 158
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
L +DE + LD + + + ++ ++ G ++ + D+++LL+DG+
Sbjct: 159 PVLLLDEPTASLDINHQVRTLELVRR--LVDDGKTAVAAIHDLDLAARYCDELVLLADGR 216
Query: 403 IVYQGPRELVL 413
+ GP VL
Sbjct: 217 VRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG---YPKKQETF 927
+L G++ + G + A+MG +G+GK+TL V+AG + GDI G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 928 ARISGYCE-QNDIHSPFVTVYESLFYSAWLRLP----------PEVNSETRKMFIEEVME 976
A + + Q I P V+ + +LRL PE++ I E ++
Sbjct: 82 AHLGIFLAFQYPIEIPGVS------NADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLK 135
Query: 977 LVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
LV + P L ++ VN G S ++KR I + + + +DE SGLD A I
Sbjct: 136 LVGMDPSFLSRN------VNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKI 189
Query: 1034 VMRTVRNTVDTGRTVVCTIH 1053
+ + + + +++ H
Sbjct: 190 IAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 54/264 (20%), Positives = 99/264 (37%), Gaps = 55/264 (20%)
Query: 156 HILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215
L K+ +L +VS ++ G LLG GK+TL L G P+ G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFR 71
Query: 216 GHNMDEFVPE------RTAAYISQHDNHIG----EMTVRETLAFAARCQGVGTRYEMLTE 265
G ++ + + R + Q + MTVR+ + R L E
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVRQIIGEPLR------HLTSLDE 123
Query: 266 LSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325
++ + A + L ++GL ++ D++ R +S
Sbjct: 124 SEQKARIAEL---------------------------LDMVGLR--SEDA--DKLPRQLS 152
Query: 326 GGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384
GGQ +R+ + V P L + +DE + LD I+ ++ + GTA + +
Sbjct: 153 GGQLQRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHD 210
Query: 385 APETYNLFDDIILLSDGQIVYQGP 408
+ + ++ GQIV +
Sbjct: 211 LRLVQSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 69/293 (23%), Positives = 117/293 (39%), Gaps = 55/293 (18%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGH 217
LK+VS + G +LG SGK+T+ L G L P +K+ G +T +
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDG-ITISKE 76
Query: 218 NMDEFVPERTAAYISQH-DNH-IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
N+ E + I Q+ DN IG TV + +AF G + + +K
Sbjct: 77 NLKEI--RKKIGIIFQNPDNQFIG-ATVEDDIAF-------GLENKKVP----PKK---- 118
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
MK +I D KV D D+ + +SGGQK+RV
Sbjct: 119 ---------MKD---------IIDDLAKKVGMEDYL------DKEPQNLSGGQKQRVAIA 154
Query: 336 EMM-VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394
++ + P + +F DE ++ LD +I + +IS+ E D
Sbjct: 155 SVLALNPEIIIF-DESTSMLDPKGKREIKKIMVD-LRKTRKKTLISITHDMDEAILA-DK 211
Query: 395 IILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQEVTSKKDQEQ 444
+I+ S+G+++ QG + +L E E P ++ L+ + ++E+
Sbjct: 212 VIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 983 LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042
LR+ L+ P + LS +++RL A L+ P +F+DE TS LD + + + ++
Sbjct: 80 LREQLI-YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK--- 135
Query: 1043 DTGRTVVCTIHQPSIDIF 1060
+ G TV+ H+PS+ F
Sbjct: 136 ELGITVISVGHRPSLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+L+DVS V G+LT++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF-----AARCQGV 256
+ AY+ Q I TVR + F AAR
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILFFDEEDAARLADA 755
|
Length = 1560 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--KQ 924
D +L GVS +TA++G SG GK+T + L + ++R+ G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 925 ETFAR---ISGYCEQNDIHSPF-----VTVYESLFYSAWL-RLPPEVNSETRKMFIEEVM 975
+ R ++ Q + P ++VY+++ Y + P++ + +E +
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD---IVESAL 131
Query: 976 ELVEL-----KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
+ +L + +S + L G Q++RL IA L P ++ MDEP GLD A
Sbjct: 132 KDADLWDEIKHKIHKSALDLSG------GQQQRLCIARALAVKPKVLLMDEPCFGLDPIA 185
Query: 1031 AAIVMRTVRN-TVDTGRTVVCTIHQ-PSIDIFEAFDELF 1067
+ V +++ + + T+V H + F F
Sbjct: 186 SMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 316 VGDEMRRGVSGGQKKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINS 374
V + + G+SGGQ++RV + + P + L +DE ++ LD T ++ K +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYNLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 51/255 (20%), Positives = 98/255 (38%), Gaps = 55/255 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
++ VS VK G + LLGP +GKTT + G + P SG++ +G ++ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ A Y+ Q + ++TV E + + LS++E+
Sbjct: 71 KRARLGIGYLPQEASIFRKLTVEENILAVLE----------IRGLSKKEREE-------- 112
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV-G 340
+ L+ + + +SGG+++RV +
Sbjct: 113 ----------------KLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALATN 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHI--NSGTAVISLLQPAPETYNLFDDIILL 398
P L +DE G+D I ++ I I + G V+ ET ++ D ++
Sbjct: 152 PKF-LLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITDRAYII 206
Query: 399 SDGQIVYQG-PRELV 412
+G+++ +G P E+
Sbjct: 207 YEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN---MDEF 222
L D+S V PG L +++GP +GKTT++ + GK P G V + G + + E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEH 72
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L +S + G ++G +GK+TLL A+AG L P+ SG++ +G ++ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFAAR 252
+ A +++ E+T+ E LA A
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAES 108
|
Length = 263 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 31/160 (19%)
Query: 882 GVLTALMGVSGAGKTTLMDVLAGRKTGG----YITGDIRISGYPKKQETFARISGYCEQN 937
G TA++G +G GK+TL+ L+ T ++ G+ I Y K+ AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGE-HIQHYASKE--VARRIGLLAQN 89
Query: 938 DIHSPFVTVYESL---------FYSAWLRLPPE-VNSETRKMFIEEVMELVELKPLRQSL 987
+TV E + ++ W + E V + I + QS
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLA--------DQS- 140
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
V+ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 44/203 (21%), Positives = 80/203 (39%), Gaps = 43/203 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNM-----D 220
+KDVS +T ++GP GK+T+L ++ D PS +V+G++ + ++ D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N M++ + + + G R
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNR--------------------- 118
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
EA+ I + LK + L D D + + M +SGGQ++R+ +
Sbjct: 119 ------------SEADEIVESSLKRVALWDEVKDRLKSNAME--LSGGQQQRLCIARTIA 164
Query: 340 GPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD +T +I
Sbjct: 165 VKPEVILMDEPASALDPISTLKI 187
|
Length = 252 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 986 SLVGLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1040 NTVDTGRTVVCTIH 1053
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 4e-04
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 29/166 (17%)
Query: 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGY 933
G G + ++G +G GKTT + +LAG + G D+++S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 934 CEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993
TV + L + S F E+++ + L+ L + V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
+ LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 4e-04
Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARI 930
+L+G+S P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 931 SGYCEQNDIHSPFVTVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLV 988
D+ + +S + +S +R + SE + E +E +K + ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 989 GL-----PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 24/202 (11%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYITGDIRISGY------ 920
L +L+G++ + G AL+G SG+GK+T++ +L + G I + +
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 921 ---PKKQETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEE 973
P ++ ++ G Q+ P TV +++ + L L +E R
Sbjct: 73 PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR------ 126
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
MEL+++ L +P LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 AMELLDMVGLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 1034 VMRTVRN-TVDTGRTVVCTIHQ 1054
V+ +R + T++ H+
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 34/163 (20%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYITGD-IRISGYPKKQETFARISGYCE 935
+TAL+G SG GK+T + D++ G + G+I D + I + G
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVF 90
Query: 936 QNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL----------VELKPLR 984
Q +PF ++++++ Y LR ++ E + FIEE +E V+ K +
Sbjct: 91 QKP--NPFPKSIFDNVAYG--LR----IHGEDDEDFIEERVEESLKAAALWDEVKDKLDK 142
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
+L GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 143 SAL-------GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-TGDIRISGYPKKQETFA 928
L GV+ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 929 RIS-GYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q+ H + TVY++ + +P + + V ++ L
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDN------VAIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1046 RTVVCTIH 1053
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 36/209 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L VS G L+G +GAGK+TL+ +LAG G +T R+S
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS------LLGL 91
Query: 930 ISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVEL-----KPL 983
G+ ++ T E++ L L + E + I+E++E EL P+
Sbjct: 92 GGGF--NPEL-----TGRENIYLNGRLLGLSRK---EIDEK-IDEIIEFSELGDFIDLPV 140
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
+ S+ + RL A+ P I+ +DE + DA R +R +
Sbjct: 141 KT----------YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK 190
Query: 1044 TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
G+TV+ H PS I D ++++G
Sbjct: 191 QGKTVILVSHDPSS-IKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
LS Q++RL IA + +P +I MDEP S LD A + + + + TVV H
Sbjct: 181 LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 4e-04
Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 52/226 (23%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGYPKKQETFA 928
L V+ G TA +G +G+GK+T+M +L G G D I+ K +
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK---- 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP------ 982
DI V L + PE ++F E V++ V P
Sbjct: 79 ---------DIKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVS 117
Query: 983 -------LRQSLVGLPGVNG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026
R+ L L G++ LS Q +R+ IA L P I+ +DEPT+GL
Sbjct: 118 QEEAEALAREKLA-LVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
D + +M + +G T+V H D+ D ++++++G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 5e-04
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
+L++VS ++PG ++GP SGK+TL + G L P+ SGRV +G
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT---SGRVRLDG 63
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 13/108 (12%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG----HNMDEFV 223
LK +S ++ G + +GP +GKTT L L+G L P+ SG V G +F+
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFL 93
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGV-----GTRYEMLTEL 266
R Q ++ V ++ A + R + L+EL
Sbjct: 94 -RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 5e-04
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
K +LK VS + G + ++G SGK+TLL L G +P+ SG V +NG ++
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSL 69
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 5e-04
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 36/160 (22%)
Query: 885 TALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHS 941
T ++G+SG+GK+TL +L G +G+I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 942 PFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998
P++ ++ E+L A + +E+ E+ ++ + +P G T
Sbjct: 557 PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIKDDIENMP--LGYQT 603
Query: 999 E-----------QRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 604 ELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 54/252 (21%), Positives = 101/252 (40%), Gaps = 57/252 (22%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
T+ +L+DVS + PG +T L+GP SGK+T++ L P G+V +G +
Sbjct: 23 TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ---GGQVLLDGKPIS 79
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGT-RYEMLTELSRREKAAGIK 276
++ + + + Q ++++ +A+ G+ + +E + E +++ A
Sbjct: 80 QYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCSFECVKEAAQKAHAHSF- 132
Query: 277 PDPDIDVFMKAASTE-GEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
I TE GE+ + + SGGQK+RV
Sbjct: 133 ----ISELASGYDTEVGEKGSQL--------------------------SGGQKQRVAIA 162
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SLLQPAPETYNL 391
++ L +DE ++ LD+ + Q V + VI S ++ A
Sbjct: 163 RALIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVERA------ 215
Query: 392 FDDIILLSDGQI 403
D I++L G+I
Sbjct: 216 -DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 41/202 (20%), Positives = 83/202 (41%), Gaps = 42/202 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLL--LALAGKLDPSLKVSGRVTYNGHNM-----D 220
LK+++ + +T ++GP GK+T + L L ++ P++K++G + YNG N+ D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N + ++ + +A+ R G + ++ EK+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKL---QEIVEKS-------- 135
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+K + E + + L +SGGQ++R+ +
Sbjct: 136 ----LKDVALWDEVKDRLHTQAL-------------------SLSGGQQQRLCIARALAT 172
Query: 341 PALALFMDEISTGLDSSTTFQI 362
L MDE ++ LD +T +I
Sbjct: 173 NPDVLLMDEPTSALDPVSTRKI 194
|
Length = 259 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 31/167 (18%)
Query: 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISGYC 934
G+ + ++G +G GKTT + +LAG G I ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 935 EQNDIHSPFVTVYESLFYSAWLRLPPEV--NSETRKMFIEEVMELVELKPLRQSLVGLPG 992
TV + L + + T F E+ + ++++ + V
Sbjct: 77 ----------TVRDLLS---------SITKDFYTHPYFKTEIAKPLQIEQILDREV---- 113
Query: 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 -PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 57/256 (22%), Positives = 103/256 (40%), Gaps = 47/256 (18%)
Query: 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PE 225
+DVS + PG + ++G SGK+TLL LAG+L P + + +G ++ + E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 226 RTA------AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
R ++ Q+ M V R +G R+ A
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH-----YGNIRATAQ----- 129
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
D+ +V +I + D++ R SGG ++R+ +V
Sbjct: 130 --------------------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLV 164
Query: 340 -GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398
P L +FMDE + GLD S ++++ + + + G AVI + L ++++
Sbjct: 165 TRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRLLVM 222
Query: 399 SDGQIVYQGPRELVLE 414
G++V G + VL+
Sbjct: 223 QQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 6e-04
Identities = 45/175 (25%), Positives = 76/175 (43%), Gaps = 30/175 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYITGDIRISG-----YPK 922
+ G+S G AL+G SG+GK+ +++ +L + +G I G +
Sbjct: 26 VKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFDGEDLLAASE 84
Query: 923 KQETFARISGYCEQNDIH----------SPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
+Q + G N I +P T+ + L LRL ++ +
Sbjct: 85 RQ--LRGVRG----NKIGMIFQEPMTSLNPLHTIGKQLAEV--LRLHRGLSRAAARARAL 136
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
E++ELV + + L P + LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 137 ELLELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 37/172 (21%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQET 926
+LN +S + R G + G SG GK+TL+ ++A +G + IS E
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP--EI 78
Query: 927 FARISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
+ + YC Q +P + TVY++L + P ++ ++ +
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQ-----------PDPAIF 117
Query: 984 RQSLV--GLP------GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
L LP + LS +++R+++ L P ++ +DE TS LD
Sbjct: 118 LDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 6e-04
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 33/169 (19%)
Query: 876 SGAFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFARISG 932
G G V+ + G +G GKTT +LAG G + +++IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 933 YCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
TV + LR + ++ S + E+++ ++L+ L V
Sbjct: 412 --------DYDGTVED------LLRSITDDLGSS---YYKSEIIKPLQLERLLDKNV--- 451
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 --KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 62/271 (22%), Positives = 101/271 (37%), Gaps = 61/271 (22%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----- 221
+LK ++ +T L+G GK+TL + L+G L P G V + G +D
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ ++ A + I + +AF+ R GV E++RR
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRR----------- 116
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
+D + + I + +S GQKKRV +V
Sbjct: 117 VDEALTLVDAQHFRHQPI-----------------------QCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFK----QNIHINSGTAVISLLQPAPETYNLFDDII 396
A L +DE + GLD + Q++ + Q H+ + I L+ Y + D +
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI------YEISDAVY 207
Query: 397 LLSDGQIVYQG-PRELVL--EFFESMGFKCP 424
+L GQI+ G P E+ E E G P
Sbjct: 208 VLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 7e-04
Identities = 60/239 (25%), Positives = 97/239 (40%), Gaps = 52/239 (21%)
Query: 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDP---SLKVSGRVTYNGHNMDEFVPE---RTA 228
+ G+ L+GP +GKT+LL AL G L P SLK+ NG + E PE +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKI------NGIELRELDPESWRKHL 425
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
+++ Q + + T+R+ + PD + +A
Sbjct: 426 SWVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL 459
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMD 348
E A V L GLD T +GD+ G+S GQ +R+ ++ P L +D
Sbjct: 460 ----ENAWVSEFLPLLPQGLD----TPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLD 510
Query: 349 EISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407
E + LD+ + ++ + V L+ + +D I ++ DGQIV QG
Sbjct: 511 EPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 22/191 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-----KKQET 926
++ VS + R G + + G+ GAG+T L+ L G G + G++ I+G P Q
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAI 334
Query: 927 FARISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL------V 978
A I+ E H P + V +++ S + S KM I+ EL +
Sbjct: 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSV-------LKSFCFKMRIDAAAELQIIGSAI 387
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+ ++ + LP + LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 388 QRLKVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1039 RNTVDTGRTVV 1049
G ++
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 48/223 (21%), Positives = 81/223 (36%), Gaps = 53/223 (23%)
Query: 157 ILPSTKKHL-----TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVS 209
I+ S+ HL LK + +T L+GP GK+T L L L P + ++
Sbjct: 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTIT 64
Query: 210 GRVTYNGHN-----MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLT 264
G V+ G N D + + Q N ++ E + + R GV
Sbjct: 65 GNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPF-PFSIYENVIYGLRLAGV-------- 115
Query: 265 ELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR-- 322
D V +A T ++A + + V D +
Sbjct: 116 --------------KDKAVLDEAVETSLKQAAIWDE---------------VKDHLHESA 146
Query: 323 -GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+SGGQ++RV ++ + +DE ++ LD ++ QI N
Sbjct: 147 LSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189
|
Length = 252 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (99), Expect = 7e-04
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 17/206 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET---FA 928
LNGVS + G +++G +G+GK+T ++ G G ++I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN ++ F A + E + + EE+++ V+ L +++
Sbjct: 81 RKIGMVFQNP---------DNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML 131
Query: 989 GLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
V +I +D + D + +MK G
Sbjct: 192 LTVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 60/294 (20%), Positives = 116/294 (39%), Gaps = 19/294 (6%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK++S ++ G + +LG +GK+ L+ L G +D SGR+ Y+ ++
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYHVALCEKCGY 71
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ + + G E + F + R + + A D +D
Sbjct: 72 VERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNV 131
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR-----RGVSGGQKKRVTTGEMMV 339
++A G E + ++ MV R R +SGG+K+RV +
Sbjct: 132 LEALEEIGYEGKEAVGRAVDLI-------EMVQLSHRITHIARDLSGGEKQRVVLARQLA 184
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY-NLFDDIILL 398
DE + LD T + N ++ + + + V++ PE +L D I L
Sbjct: 185 KEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEVIEDLSDKAIWL 242
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDR 451
+G+I +G P E+V F E G +++ + + + ++ + + DR
Sbjct: 243 ENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKVRNVSKRYISVDR 294
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-04
Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 58/210 (27%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHN-----MD 220
LK ++ ++ ++T L+GP GK+T L L L PS+K+ G V +G + +D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + ++ + + K A +
Sbjct: 79 VNQLRKRVGMVFQQPNPF-PMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAAL----- 132
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEM 337
+E V D +++ G+SGGQ++R +
Sbjct: 133 -----------WDE---------------------VKDRLKKSALGLSGGQQQR-----L 155
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQI 362
+ ALA L MDE ++ LD +T +I
Sbjct: 156 CIARALAVEPEVLLMDEPTSALDPISTLKI 185
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 8e-04
Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 38/171 (22%)
Query: 884 LTALMGVSGAGKTTLM---DVLAGRKTGGYITGDIRISGYPKKQ----------ETFARI 930
+TAL+G SG GK+T + + + G + G+I + +P E RI
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNILSPEVDPIEVRMRI 101
Query: 931 SGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV- 988
S ++ + PF +++E++ Y +R R+ +EE +E LR + +
Sbjct: 102 SMVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVE----NALRNAALW 148
Query: 989 -------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
G N LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 149 DEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 72/264 (27%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG SG + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGSGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
A AY+SQ M V L Q TR E+L +++
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH---QPDKTRTELLNDVAGA------------- 112
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGE--M 337
L LD D++ R SGG+ +RV +
Sbjct: 113 -----------------------LALD--------DKLGRSTNQLSGGEWQRVRLAAVVL 141
Query: 338 MVGPAL-----ALFMDEISTGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
+ P L +DE LD S ++++ Q G A++ T
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTL 196
Query: 390 NLFDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 RHAHRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 9e-04
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921
+L G+ G + AL+G +GAGK+TLM ++AG +G + I G P
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNP 74
|
Length = 510 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 9e-04
Identities = 49/165 (29%), Positives = 73/165 (44%), Gaps = 40/165 (24%)
Query: 884 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIT--GDIRISGYPKKQETFARISGYC 934
+TA +G SG GK+T++ D++ G + G +T G + E RI G
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRI-GMV 96
Query: 935 EQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV----- 988
Q +PF ++Y+++ Y +N M ELVE + LRQ+ +
Sbjct: 97 FQKP--NPFPKSIYDNIAYG------ARINGYKGDM-----DELVE-RSLRQAALWDEVK 142
Query: 989 ------GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
GL LS Q++RL IA + P +I MDEP S LD
Sbjct: 143 DKLKQSGL----SLSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 9e-04
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 855 MPQQMKLQGVP--EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGR 905
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D+++G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 906 KTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEV 962
+ G + D P R+ +Q + PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFG------PRM 111
Query: 963 NSETRKMFIEEVMELVELKPLRQSLV-----------GLPGVNGLSTEQRKRLTIAVELV 1011
T + ++EV+E K LRQ+ + GL LS Q++RL IA L
Sbjct: 112 LGTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLA 163
Query: 1012 ANPSIIFMDEPTSGLD 1027
P +I MDEP S LD
Sbjct: 164 IEPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 52/246 (21%), Positives = 95/246 (38%), Gaps = 54/246 (21%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
IL D++ ++ G++ ++G SGK+TLL + SG+V NG
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFD---SGQVYLNGQETP 63
Query: 221 --------EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+F E Y+ Q+ I TV E L +G +Y+ L++ +REK
Sbjct: 64 PLNSKKASKFRRE-KLGYLFQNFALIENETVEENLD-------LGLKYKKLSKKEKREK- 114
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
K L+ +GL++ + + +SGG+++RV
Sbjct: 115 ------------KK--------------EALEKVGLNLKLKQKIYE-----LSGGEQQRV 143
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
++ P + DE + LD ++++ + +N I ++ PE
Sbjct: 144 ALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE---LNDEGKTIIIVTHDPEVAKQA 200
Query: 393 DDIILL 398
D +I L
Sbjct: 201 DRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 20/154 (12%)
Query: 293 EEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TGEMMVGPALALFMDEIS 351
EA + +YL +GLD D+ + + G+SGGQK+RV G + + P + +F DE +
Sbjct: 150 SEAKKLAKFYLNKMGLD---DSYL-ERSPFGLSGGQKRRVAIAGILAIQPEILIF-DEPT 204
Query: 352 TGLD---SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG- 407
GLD Q++ K N V + + D++I++ G+I+ G
Sbjct: 205 AGLDPKGEHEMMQLILDAKAN-----NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
Query: 408 PRELVL--EFFESMGFKCPKRKGVADFLQEVTSK 439
P E+ S + P+ V + ++ K
Sbjct: 260 PYEIFTDQHIINSTSIQVPR---VIQVINDLIKK 290
|
Length = 320 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 44/205 (21%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGHNM-----D 220
L D++ + R+T L+GP GK+TLL L P +++G + YNG N+ D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
R + Q N + ++ E +A+ R G + + D
Sbjct: 82 VVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTL---------------DTI 125
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM-V 339
++ +K A+ E + + D L +SGGQ++R+ + V
Sbjct: 126 VEKSLKGAALWDEVKDRLHDSAL-------------------SLSGGQQQRLCIARTLAV 166
Query: 340 GPALALFMDEISTGLDSSTTFQIVN 364
P + L MDE + LD T +I +
Sbjct: 167 NPEVIL-MDEPCSALDPIATAKIED 190
|
Length = 253 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 61/252 (24%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL +S + G+ ++G +GK+T+L L D + SG +T +G ++ + +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDIRDVTQQS 334
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
R A I D + T+ + + + + E
Sbjct: 335 LRRAIGIVPQDTVLFNDTIAYNIKYGR------------PDATAEEV------------- 369
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG--VSGGQKKRVTTGEMMVGPA 342
AA+ + + I L DT VG+ RG +SGG+K+RV ++
Sbjct: 370 -GAAAEAAQIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNP 418
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSG---TAVI----SLLQPAPETYNLFDDI 395
L +DE ++ LD+ T I + + S T VI S + A D+I
Sbjct: 419 PILILDEATSALDTHTEQAI----QAALREVSAGRTTLVIAHRLSTIIDA-------DEI 467
Query: 396 ILLSDGQIVYQG 407
I+L +G+IV +G
Sbjct: 468 IVLDNGRIVERG 479
|
Length = 497 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383
+SGGQ +++ ++ + +DE + GLD + Q++ K + + +I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS-LQTDENKTIILVSH 204
Query: 384 PAPETYNLFDDIILLSDGQIVYQG-PREL 411
E D++I++ +G IV Q P+EL
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.001
Identities = 45/204 (22%), Positives = 84/204 (41%), Gaps = 26/204 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L +S G ++G +GAGK+TL+ ++AG + T +G ++++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 930 ISGYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
++ E P +T E++ L L + E ++E++E EL +
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDE----KVDEIIEFAEL----GDFI 141
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1048
P V S+ RL +V P I+ +DE + DA + + V+ +T+
Sbjct: 142 DQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTI 200
Query: 1049 VCTIHQPSIDIFEAFDELFLMKRG 1072
V H I + D ++ G
Sbjct: 201 VLVSHDLGA-IKQYCDRAIWLEHG 223
|
Length = 249 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 60/257 (23%), Positives = 104/257 (40%), Gaps = 55/257 (21%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L++V+ +KPG++ + GP SGK+TLL + D S G + ++ + +
Sbjct: 329 PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKL--- 382
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
Q D+ + V F + ++ A G +PD
Sbjct: 383 -------QLDSWRSRLAVVSQTPF------------LFSDTVANNIALG-RPD------- 415
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGPAL 343
A E E + + +L L DT VG+ RGV SGGQK+R++ ++ A
Sbjct: 416 -ATQQEIEHVARLASVHDDILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAE 471
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLLQPAPETYNLFDDIIL 397
L +D+ + +D T QI++ +Q G VI S L A +I++
Sbjct: 472 ILILDDALSAVDGRTEHQILHNLRQ---WGEGRTVIISAHRLSALTEA-------SEILV 521
Query: 398 LSDGQIVYQGPRELVLE 414
+ G I +G + + +
Sbjct: 522 MQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 53/206 (25%), Positives = 78/206 (37%), Gaps = 59/206 (28%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929
VLL VS + G LT ++G +G+GK+TL+ L
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS------------------------- 708
Query: 930 ISGYCEQNDIHSPFVTVYESLFY---SAWLRLPPEVNSETRK---MFIEE----VMELVE 979
Q +I V S+ Y AW+ +N+ R F EE + + V
Sbjct: 709 ------QFEISEGRVWAERSIAYVPQQAWI-----MNATVRGNILFFDEEDAARLADAVR 757
Query: 980 LKPLRQSLVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+ L L L G GL TE Q+ R+++A + AN + +D+P S LDA
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQ 1054
V+ G+T V HQ
Sbjct: 816 HVGERVVEECFLGALAGKTRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 0.001
Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 27/165 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETFAR 929
LNG++ + G L A++G G GK++L+ L K G++ ++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL---RQS 986
I QND ++ E++ + L N + + +E L +L+ L ++
Sbjct: 710 I-----QND------SLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRT 752
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+G GVN LS Q++R+++A + +N I D+P S +DA
Sbjct: 753 EIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 40/256 (15%)
Query: 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903
+TF +V + P ++ L + V+ + G A++G +G+GK+TL+ L
Sbjct: 3 ITFQKVEHRYQY-------KTPFERRALYD-VNVSIPSGSYVAIIGHTGSGKSTLLQHLN 54
Query: 904 G--RKTGGYIT-GDIRISGY--PKKQETFARISGYCEQNDIHSPF-VTVYESLFYSAWLR 957
G + T G +T G+ I+ KK + + G Q H F TV + + +
Sbjct: 55 GLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG---- 110
Query: 958 LPPE---VNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012
P V+ E K E++ELV L L +S L G Q +R+ IA L
Sbjct: 111 --PMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSG------GQMRRVAIAGVLAM 162
Query: 1013 NPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071
P ++ +DEPT+GLD + +M + + G T V H D D++ +M +
Sbjct: 163 EPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK 221
Query: 1072 GG-------REVYVGP 1080
G RE++ P
Sbjct: 222 GTVFLQGTPREIFADP 237
|
Length = 290 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 25/211 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--ITGDIRISGYPKKQETFAR 929
L ++ G AL+G SG+GK+T+ ++L T Y G+I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 930 ISGYC---EQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
+ QN +H T+ ++ Y+ + E E +M M+ + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFIN--KMDNG 469
Query: 987 LVGLPGVNG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + R ++ +D
Sbjct: 470 LDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE----RAIQAALDE 525
Query: 1045 ---GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
RT + H+ S E DE+ +++ G
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 56/210 (26%), Positives = 85/210 (40%), Gaps = 30/210 (14%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD------IRIS 918
P+ K LN +S + G TAL+G +G+GK+T+ + G + D I +
Sbjct: 16 PDSKKPALNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVD 70
Query: 919 GYPKKQETFARIS---GYCEQNDIHSPFV--TVYESLFYSAWLRLPPEVNSETRKMFIEE 973
G +T I G QN + FV TV + + + R V + +
Sbjct: 71 GITLTAKTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRD 126
Query: 974 VMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
V+ V + S LS Q++R+ IA L P II +DE TS LD
Sbjct: 127 VLADVGMLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 1034 VMRTVRN-TVDTGRTVVCTIHQPSIDIFEA 1062
+++ +R TV+ H DI EA
Sbjct: 182 ILKLIRKLKKKNNLTVISITH----DIDEA 207
|
Length = 282 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 58/258 (22%), Positives = 90/258 (34%), Gaps = 40/258 (15%)
Query: 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH 217
L T L V + G + LLGP SGK+TLL L+G + + G
Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR 69
Query: 218 NM--------DEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRR 269
+ D YI Q N + ++V E + A +G+ T S
Sbjct: 70 TVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA----LGSTPFWRTCFS-- 123
Query: 270 EKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329
F + +A L +G+ A V +SGGQ+
Sbjct: 124 -------------WFTREQKQRALQA-------LTRVGMVHFAHQRVST-----LSGGQQ 158
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389
+RV ++ A + DE LD + +IV ++I+ N G V+ L
Sbjct: 159 QRVAIARALMQQAKVILADEPIASLDPESA-RIVMDTLRDINQNDGITVVVTLHQVDYAL 217
Query: 390 NLFDDIILLSDGQIVYQG 407
+ I+ L G + Y G
Sbjct: 218 RYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 64/255 (25%), Positives = 103/255 (40%), Gaps = 51/255 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----V 223
LKDVS V G ++G SGK+TL L G L P +G +T G + E V
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDV 79
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ DN TV++ +AF GV R EM+ R A
Sbjct: 80 RRQVGMVFQNPDNQFVGATVQDDVAFGLENIGV-PREEMV----ERVDQA---------- 124
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
L+ +G++ + E R +SGGQK+RV ++
Sbjct: 125 -------------------LRQVGMEDFLN----REPHR-LSGGQKQRVAIAGVLALQPD 160
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
+ +DE ++ LD +++ +Q + G V+S+ E D +I+++ G+I
Sbjct: 161 IIILDEATSMLDPRGRREVLETVRQ-LKEQKGITVLSITHDLDEAAQA-DRVIVMNKGEI 218
Query: 404 VYQGPRELVLEFFES 418
+ +G E E F+S
Sbjct: 219 LEEGTPE---EIFKS 230
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 63/282 (22%), Positives = 111/282 (39%), Gaps = 70/282 (24%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----- 222
+ DVS V+ G + +++G SGK+TLL + ++P+ SG+V +G ++
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKEL 96
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
+ + + + Q + TV E +AF QGV R E+AA
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP-------RAEREERAA------- 142
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
EA L+++GL+ + +SGG ++RV +
Sbjct: 143 -------------EA-------LELVGLEGWEHKYPDE-----LSGGMQQRVG-----LA 172
Query: 341 PALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
ALA L MDE + LD ++ + + + ++ + E L D I
Sbjct: 173 RALAVDPDILLMDEAFSALDPLIRREMQDELLR-LQAELQKTIVFITHDLDEALRLGDRI 231
Query: 396 ILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
++ DG++V G P E++ P V +F + V
Sbjct: 232 AIMKDGRLVQVGTPEEILTN---------PANDYVREFFRGV 264
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L P L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQ 233
A I Q
Sbjct: 64 IATIMQ 69
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 53/269 (19%), Positives = 107/269 (39%), Gaps = 52/269 (19%)
Query: 149 EDLLN----YLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-- 202
ED+ N YL+I ILKD++ + + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 203 -DPSLKVSGRVTYNGHN---MDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT 258
D +KV G+V Y G + +D + + Q N +++ + +A+ + G+
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE 122
Query: 259 RYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318
+ E+ + + G+ +V+ + S +
Sbjct: 123 KREIKKIVEECLRKVGLWK----EVYDRLNSPASQ------------------------- 153
Query: 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV 378
+SGGQ++R+T + L MDE ++ +D + I + + + A+
Sbjct: 154 -----LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE---LKNEIAI 205
Query: 379 ISLLQPAPETYNLFDDIILLSDGQIVYQG 407
+ + + + D + L +G++V G
Sbjct: 206 VIVSHNPQQVARVADYVAFLYNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.002
Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 38/199 (19%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYITGD-IRISGYPKKQETFARIS 931
VS + G A++G +GAGKTTL+++L T G I D I I+ +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR--------- 404
Query: 932 GYCEQNDIHSPFVTVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVE--------LKP 982
+ TV++ ++ +R + E EEV E + LK
Sbjct: 405 -----ESLRKSIATVFQDAGLFNRSIRENIRLGREGATD--EEVYEAAKAAAAHDFILKR 457
Query: 983 LR--QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+LVG G N LS +R+RL IA ++ N I+ +DE TS LD A V+N
Sbjct: 458 SNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RVKN 512
Query: 1041 TVDT---GRTVVCTIHQPS 1056
+D RT H+ S
Sbjct: 513 AIDALRKNRTTFIIAHRLS 531
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 55/251 (21%), Positives = 97/251 (38%), Gaps = 49/251 (19%)
Query: 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF 222
K + L +VS V G++ ++G +GK+TL+ + P+ SG V +G ++
Sbjct: 16 KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTL 72
Query: 223 V-PERTAA-----YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
E T A I QH N + TV +A
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALP-------------------------- 106
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336
++ +T +E L ++GL D +SGGQK+RV
Sbjct: 107 --------LELDNTPKDEIKRKVTELLALVGL-----GDKHDSYPSNLSGGQKQRVAIAR 153
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
+ L DE ++ LD +TT I+ K+ I+ G ++ + + D +
Sbjct: 154 ALASNPKVLLCDEATSALDPATTQSILELLKE-INRRLGLTILLITHEMDVVKRICDCVA 212
Query: 397 LLSDGQIVYQG 407
++S+G+++ QG
Sbjct: 213 VISNGELIEQG 223
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.002
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVV 1049
P LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++
Sbjct: 1354 PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTII 1413
Query: 1050 CTIHQ 1054
H+
Sbjct: 1414 TIAHR 1418
|
Length = 1466 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+LKD+S + PG L+G +GK+TLL +AG+L+P G VT+
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV------- 63
Query: 226 RTAAYISQ 233
Y Q
Sbjct: 64 -KIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|221739 pfam12730, ABC2_membrane_4, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 39/210 (18%), Positives = 74/210 (35%), Gaps = 22/210 (10%)
Query: 512 ELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI-----YAGALFFTIV 566
ELL +KR I LI + + + L F + + ALF ++
Sbjct: 3 ELLKLKRTKIFLIL-LI-LPLLLALLALLLFGVNGDTGLSPGSLLLSSFSFLSALFLPLL 60
Query: 567 MPLFSGFA---EISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLS 623
+ + + E +KL + K F A + IL ++ L + ++
Sbjct: 61 IAILASLLVSREFKNGTIKLLLSLPISRGKIF--LAKLLVLLIL-SLLASLLLLLLSLIA 117
Query: 624 YYVIGYDP----NAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLL 679
++G LLL ++ L FL + RN + + + +LL
Sbjct: 118 GLLLGGSGFSLSLLLGALLLLLLLSLLALLLILLILFLSLLLRN-----SAVAIGIGLLL 172
Query: 680 ALGGFVLSREEVKKWWKWAYWSSPVMYAQN 709
L G +L + + W+Y V+ + +
Sbjct: 173 ILLGLLLGSLPLWLLFPWSYLPLIVLLSLS 202
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 230 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 18/51 (35%), Positives = 35/51 (68%), Gaps = 3/51 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---LKVSGRVTY 214
+LK+++ ++ G + + G SGKT+LL+ + G+L+PS +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 47/181 (25%), Positives = 81/181 (44%), Gaps = 32/181 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVL---AGRKTGGYITGDIRISG---YPKKQE 925
+ G+S +TA++G SG GK+T + L + + + G + G Y +
Sbjct: 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82
Query: 926 T--FARISGYCEQNDIHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV---- 978
R G Q +PF +++YE++ Y ++++ + ++E++E
Sbjct: 83 INRLRRQIGMVFQRP--NPFPMSIYENVAYGV------RISAKLPQADLDEIVESALKGA 134
Query: 979 ----ELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
E+K L +S +GL G Q++RL IA L P ++ MDEP S LD A
Sbjct: 135 ALWQEVKDKLNKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMK 188
Query: 1034 V 1034
V
Sbjct: 189 V 189
|
Length = 259 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1054
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH- 199
Query: 1055 PSIDIFEAFDELFLMKRGGRE 1075
+D D + +MK G E
Sbjct: 200 -DLDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.003
Identities = 43/204 (21%), Positives = 79/204 (38%), Gaps = 49/204 (24%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
+ VS R G + + G+ GAG+T L L G + +G+I + G
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDG------------ 320
Query: 932 GYCEQNDIHSP---------FVT-------------VYESLFYSAWLRLPPE--VNSETR 967
+ I SP +V + E++ ++ R ++
Sbjct: 321 ---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKE 377
Query: 968 KMFIEEVMELVELKP--LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ E + + +K Q + L G N Q+K + +A L +P ++ +DEPT G
Sbjct: 378 RALAERYIRRLRIKTPSPEQPIGTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRG 431
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVV 1049
+D A A + R +R G+ ++
Sbjct: 432 IDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
T + ++S V + LLGP +GK+TLL + G L P+ SG + ++GH
Sbjct: 14 TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW 64
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 45/204 (22%), Positives = 83/204 (40%), Gaps = 47/204 (23%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLAL--AGKLDPSLKVSGRVTYNGH----NMDE 221
LK ++ + ++T L+GP GK+TLL L L +K++G++T +G N+D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
+ Q N M++ E +A+ R QG+ + + D +
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL---------------DEVV 122
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR---GVSGGQKKRVTTGEMM 338
+ ++ A+ E V D ++ G+SGGQ++R+ +
Sbjct: 123 ERSLRGAALWDE----------------------VKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 339 VGPALALFMDEISTGLDSSTTFQI 362
+ MDE ++ LD T +I
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.003
Identities = 46/182 (25%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRIS 918
+G P +K L+ V+ G L+G +G+GK+TL+ L G +G I + I+
Sbjct: 14 EGTPFEK-KALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDIT 72
Query: 919 GYPKKQETFARISGYCEQNDIHSPFV-TVYESL-FYSAWLRLPPEVNSETRKMFIEEVME 976
K + G Q + F T+ + + F L L + E + ++ M
Sbjct: 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGL----SEEEIENRVKRAMN 128
Query: 977 LVELK--------PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028
+V L P LS Q++R+ IA + P I+ +DEPT+GLD
Sbjct: 129 IVGLDYEDYKDKSPFE-----------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP 177
Query: 1029 RA 1030
+
Sbjct: 178 KG 179
|
Length = 287 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219
I ++S V G++T ++GP GKTTLL + G++ P G + ++G N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENI 71
|
Length = 269 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYC 934
+S R G A++G +G+GK+TL +LAG +G++ I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 935 EQNDIHSPFVTVYESL--------FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
Q I F SL LRL ++ E R+ I E + V L P S
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHAS 144
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 145 Y--YP--HMLAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 33/223 (14%), Positives = 68/223 (30%), Gaps = 10/223 (4%)
Query: 504 LLKACTSRELLLMKRNSFVY-IFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALF 562
L+ ++L+ + I LI G + + L R + S A +
Sbjct: 35 FLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRL--YHWSNPSLDYLAFIVP 92
Query: 563 FTIVMPLFSGFAEISMTIVKLPVFYKQRDFKF---FPPWAYAIPSWILKIPISFLEPAVW 619
I+M + + + + + + + + ++ L +
Sbjct: 93 GVILMSVLFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLV 152
Query: 620 VFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA-IGRNLVVAYTFGSFAVLVL 678
+ + +++G LLLL L L L A G+ +L L
Sbjct: 153 LLVIAFLLGVPFLGS-LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPL 211
Query: 679 LALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW 721
L G E + W + + +P+ YA + + W
Sbjct: 212 GFLSGVFFPLELLPAWLQGISYINPLTYAIDAL--RYVYLGGW 252
|
Length = 286 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.003
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1057
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 57/243 (23%), Positives = 90/243 (37%), Gaps = 45/243 (18%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+LK ++ + PG + L+GP SGK+T+ L P+ G+V +G VP
Sbjct: 496 VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDG------VP-- 544
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+ Q+D+H V VG + + R A G+ PD ++
Sbjct: 545 ----LVQYDHHYLHRQVA----------LVGQEPVLFSGSVRENIAYGLTDTPDEEI--M 588
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
AA+ + I DT VG E +SGGQK+R+ +V L
Sbjct: 589 AAAKAANAHDFIM-------EFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKPRVLI 640
Query: 347 MDEISTGLD--SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
+DE ++ LD Q V+ + D I++L G +V
Sbjct: 641 LDEATSALDAECEQLLQESRSRA-------SRTVLLIAHRLSTVERA-DQILVLKKGSVV 692
Query: 405 YQG 407
G
Sbjct: 693 EMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+LKD+S +KPG L+ GP +GK++L ALAG L P SGR+ F+P+
Sbjct: 15 VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAG-LWPW--GSGRIGMPEGEDLLFLPQ 71
Query: 226 R 226
R
Sbjct: 72 R 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 23/55 (41%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216
LKDVS V G L+G +GK+TLL LAG P SG VT G
Sbjct: 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPD---SGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1106 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-190 Score=1718.29 Aligned_cols=1005 Identities=55% Similarity=0.926 Sum_probs=934.0
Q ss_pred cchHHHhHHHHHhhCCChhhhhhcccccCCCCcceecccCcChHHHHHHHHHhhhcccccHHHHHHHHHHHHHhcCCCCC
Q 001291 36 EDDEEALKWAAIEKLPTYNRLKKGLLTTSQGEAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLP 115 (1106)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 115 (1106)
+||||+|+|||+|||||++| +++.+... .++|+.+++..+++.++++..+..++|+++++.++++|++++ ++|
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~p 84 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFE--SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--ELP 84 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhcc--CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cCC
Confidence 34999999999999999999 66543211 179999999999999999999999999999999999999998 899
Q ss_pred cceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCCHHHHH
Q 001291 116 TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL 195 (1106)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1106)
.++++++++.+++++..| ||+.|...+.++.++...+.. ++....||+|+||.++||+|++++|||||||||||
T Consensus 85 ~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttll 158 (1391)
T KOG0065|consen 85 TIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTLL 158 (1391)
T ss_pred ceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHHH
Confidence 999999999999998766 999999999998887766544 55667899999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCC
Q 001291 196 LALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275 (1106)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~ 275 (1106)
++|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|+|++.
T Consensus 159 kal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~-- 233 (1391)
T KOG0065|consen 159 KALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA-- 233 (1391)
T ss_pred HHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH--
Confidence 999999988777789999999999999889999999999999999999999999999999999887 666666542
Q ss_pred CCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCC
Q 001291 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLD 355 (1106)
Q Consensus 276 ~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD 355 (1106)
..+|++++++||++|+||+||++++||+||||||||+||+++++++++++|||+|+|||
T Consensus 234 ---------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLD 292 (1391)
T KOG0065|consen 234 ---------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLD 292 (1391)
T ss_pred ---------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccccc
Confidence 26899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHh
Q 001291 356 SSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1106)
Q Consensus 356 ~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1106)
++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||+++
T Consensus 293 SsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt~ 372 (1391)
T KOG0065|consen 293 SSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLTE 372 (1391)
T ss_pred HHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHH
Q 001291 436 VTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLL 515 (1106)
Q Consensus 436 v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~ 515 (1106)
+++++++.++|..+..++.+.++.++.+.|.+++.+.++..+++.|+++++.++.++..++|.++.|+|+++|+.|++++
T Consensus 373 vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~l 452 (1391)
T KOG0065|consen 373 VTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFLL 452 (1391)
T ss_pred hhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCc
Q 001291 516 MKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFF 595 (1106)
Q Consensus 516 ~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y 595 (1106)
++||.+++++++++.+++++++|++|+++.+ .+..+...+.|++||++++.++++++++++++.++|||+|||+..||
T Consensus 453 ~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~fY 530 (1391)
T KOG0065|consen 453 MKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSFY 530 (1391)
T ss_pred HhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhccccc
Confidence 9999999999999999999999999999985 45667888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 001291 596 PPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAV 675 (1106)
Q Consensus 596 ~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~ 675 (1106)
++|||+++++++++|+.++++++|.+|+||++|+.+++++||.+|+++++.+++++++|++++++++++.+|+.++.+.+
T Consensus 531 ~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~~ 610 (1391)
T KOG0065|consen 531 PPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGILL 610 (1391)
T ss_pred ChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCccccc------------CC---CccchHHHHhhcc
Q 001291 676 LVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT------------PT---STESLGVQVLESR 740 (1106)
Q Consensus 676 l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~l~~~ 740 (1106)
+++.+++||+|++.+||+||+|++|++|++|++++++.|||++++|.|.. .. ...+.|..+++.+
T Consensus 611 L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g~ 690 (1391)
T KOG0065|consen 611 LVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSGR 690 (1391)
T ss_pred HHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEecc
Confidence 99999999999999999999999999999999999999999999999971 11 1356788899988
Q ss_pred ccc-----ccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcc
Q 001291 741 EFF-----AHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRE 815 (1106)
Q Consensus 741 ~~~-----~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 815 (1106)
++. +..+|+|+++|+++||.++|++++.+++.|+++..+.+..+..+...+...... ... ...
T Consensus 691 ~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~-------~~~----~~~- 758 (1391)
T KOG0065|consen 691 DYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKS-------AGS----SSE- 758 (1391)
T ss_pred cccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchh-------ccc----ccc-
Confidence 887 778999999999999999999999999999999888777765544332211100 000 000
Q ss_pred cCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCH
Q 001291 816 RNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGK 895 (1106)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGK 895 (1106)
.. ...+.....++++.+|++|..++++||.|.+++|-+++.+| +++++|+|||+.++||.++||||+|||||
T Consensus 759 ----~~-~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGK 830 (1391)
T KOG0065|consen 759 ----IE-KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGK 830 (1391)
T ss_pred ----cc-ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCch
Confidence 00 00011111356788999999999999999999999998887 67889999999999999999999999999
Q ss_pred HHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHH
Q 001291 896 TTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975 (1106)
Q Consensus 896 STLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 975 (1106)
|||||+|+||+++|+++|+|.|||+|+.+.+|+|.+|||+|+|.|.+.+||+|.|.|+|++|++.+++.+++.++|++++
T Consensus 831 TTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi 910 (1391)
T KOG0065|consen 831 TTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVI 910 (1391)
T ss_pred HHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q 001291 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054 (1106)
Q Consensus 976 ~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~ 1054 (1106)
+.++|++++|.++|.|| .+||++|||||+||++|++|| .||||||||||||++++..|++++|+++++|+|||||+||
T Consensus 911 ~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQ 989 (1391)
T KOG0065|consen 911 ELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQ 989 (1391)
T ss_pred HHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 99999999999999999 899999999999999999999 8999999999999999999999999999999999999999
Q ss_pred ccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCCcccc
Q 001291 1055 PSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDAHFHI 1102 (1106)
Q Consensus 1055 ~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~~~~~ 1102 (1106)
||.++++.||++++|++||++||+|++|++|+++|+|||+++||+++.
T Consensus 990 PS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~ 1037 (1391)
T KOG0065|consen 990 PSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCIS 1037 (1391)
T ss_pred CcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCC
Confidence 999999999999999999999999999999999999999999999854
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-176 Score=1714.04 Aligned_cols=1094 Identities=61% Similarity=1.014 Sum_probs=956.5
Q ss_pred cccchhccccccccccccccCCCCccCCC-------CCCcchHHHhHHHHHhhCCChhhhhhcccccC-----CCC---c
Q 001291 4 SHEIYLASTTSHRSHSRWRTGSVGAFSMS-------SREEDDEEALKWAAIEKLPTYNRLKKGLLTTS-----QGE---A 68 (1106)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~ 68 (1106)
|++..|..|.+.+ .++|.. +++|++. +..|||||+|+|||+||||||+|+|++++.+. .|+ .
T Consensus 5 ~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1470)
T PLN03140 5 GGSMRRSISRSVS-RSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81 (1470)
T ss_pred cccHHHHHHHHhh-hhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccc
Confidence 3445555554443 345633 6888542 13578999999999999999999999999652 122 2
Q ss_pred ceecccCcChHHHHHHHHHhhhcccccHHHHHHHHHHHHHhcCCCCCcceEEEeeeEEEEEEecccccCCChhhHhHHHH
Q 001291 69 FEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIF 148 (1106)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 148 (1106)
.|+|+++|+.++++.+++++++++++|+++|+.++++|.+++|+++|+++|+|+||+|++++.++++.+||++|...+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~ 161 (1470)
T PLN03140 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIA 161 (1470)
T ss_pred cccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceE
Q 001291 149 EDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA 228 (1106)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~ 228 (1106)
+.+.+..+...+++.+++||+|+||.++|||+++|+||||||||||||+|+|+++|+.+++|+|+|||+++++..+++.+
T Consensus 162 ~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i 241 (1470)
T PLN03140 162 ESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241 (1470)
T ss_pred HHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhccccee
Confidence 87776555444555678899999999999999999999999999999999999998778899999999998776667889
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1106)
+||+|+|.|++++||+|||.|+++|++.+.++++..++++++++.++.|+.+++.+|++...++.+.+..++.+++.+||
T Consensus 242 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred EEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 99999999999999999999999999877777666677788888888899999999998888877778889999999999
Q ss_pred cccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH
Q 001291 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1106)
Q Consensus 309 ~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1106)
++|+||.||+++.+||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.+++
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766889999999999999
Q ss_pred HhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhc
Q 001291 389 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSF 468 (1106)
Q Consensus 389 ~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1106)
+++||+|++|++|+++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+++.++++++++|+++
T Consensus 402 ~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s 481 (1470)
T PLN03140 402 FDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481 (1470)
T ss_pred HHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988888887666777778999999999999
Q ss_pred hhhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCC
Q 001291 469 HVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHK 548 (1106)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~ 548 (1106)
+.++.+.++++.|.+++..++.....+.|..++++|++.|++|++++++||+..+++|+++.+++|+++|++||+++.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99988888877776665556666666789999999999999999999999999999999999999999999999998766
Q ss_pred CcccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhcc
Q 001291 549 DSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIG 628 (1106)
Q Consensus 549 ~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1106)
.+..++..+.|++||++++.+++++++++.++.++|+|+|||+.+||++|+|++|+++.++|+.++++++|++|+|||+|
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 55567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHH
Q 001291 629 YDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQ 708 (1106)
Q Consensus 629 ~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~ 708 (1106)
|.+++++||.|++++++.++++.++|++++++++++.+|+.+++++++++++|+||++++++||+||+|++|+||++|++
T Consensus 642 l~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ 721 (1470)
T PLN03140 642 FAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721 (1470)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCccccc-CCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccc
Q 001291 709 NGILANEFLGHSWKKFT-PTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEE 787 (1106)
Q Consensus 709 ~al~~nef~~~~~~~~~-~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~ 787 (1106)
+++++|||.+..|.+.. .......|.++|+.+++.....|+|++++++++|+++|+++++++|+|.++.......+..+
T Consensus 722 eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~ 801 (1470)
T PLN03140 722 NALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801 (1470)
T ss_pred HHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccccc
Confidence 99999999998886432 23345789999999999988899999999999999999999999999998766655544322
Q ss_pred cccccccccccC--cccccCCCC---CC---CCCccc-C-CCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccc
Q 001291 788 FESDEQDNRIGG--TVQLSNCGE---SG---NDNRER-N-SSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQ 857 (1106)
Q Consensus 788 ~~~~~~~~~~~~--~~~~~~~~~---~~---~~~~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~ 857 (1106)
............ ......... .. ...... . ..............++++.+|+.|.+++|+||+|+|++|.
T Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~ 881 (1470)
T PLN03140 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPA 881 (1470)
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCc
Confidence 111000000000 000000000 00 000000 0 0000000000112345677899999999999999999998
Q ss_pred hhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccC
Q 001291 858 QMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQN 937 (1106)
Q Consensus 858 ~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~ 937 (1106)
+++..+..++++.+|+|||++++||+++||+|||||||||||++|+|+.++|+.+|+|.++|.+..+..+++.+|||+|+
T Consensus 882 ~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~ 961 (1470)
T PLN03140 882 EMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN 961 (1470)
T ss_pred cccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccc
Confidence 87766666677789999999999999999999999999999999999987777899999999887655566789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001291 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017 (1106)
Q Consensus 938 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~il 1017 (1106)
+.+++.+||+|++.|++.++.+.....+++++.++++++.++|.++.+..+|.+++++|||||||||+||+||+.+|+||
T Consensus 962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL 1041 (1470)
T PLN03140 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041 (1470)
T ss_pred cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999998887665555566667899999999999999999988887889999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCC
Q 001291 1018 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPD 1097 (1106)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g 1097 (1106)
||||||+|||+.++..+++.|++++++|+||||++|||+.++++.||++++|++||+++|.|+.+++++++++||++++|
T Consensus 1042 ~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g 1121 (1470)
T PLN03140 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPG 1121 (1470)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCC
Confidence 99999999999999999999999998899999999999977889999999999889999999999999999999999999
Q ss_pred Ccc
Q 001291 1098 AHF 1100 (1106)
Q Consensus 1098 ~~~ 1100 (1106)
+|+
T Consensus 1122 ~~~ 1124 (1470)
T PLN03140 1122 VPK 1124 (1470)
T ss_pred CCC
Confidence 864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-136 Score=1338.42 Aligned_cols=952 Identities=33% Similarity=0.547 Sum_probs=770.5
Q ss_pred ccHHHHHHHHHHHHHhcCCCCC--cceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeece
Q 001291 94 VDNEKFLLKLKNRIERVGIVLP--TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDV 171 (1106)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~p--~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 171 (1106)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+....||+.|.+.+....+..... ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 5677777766666666666666 9999999999999 344566789999998876664433221 12334567899999
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||.++.+.. .++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 99999999999999999999999999999974211 24999999998875432 2456999999999999999999999
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
|+++++....+.. ...+.+ ..+..++.+++.+||++++||.||+++.+||||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~-----------------------~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREE-----------------------YAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHH-----------------------HHHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9988764211100 000000 11233567899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
||||+||++|+.+|+|+||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876678999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcCCcccc---
Q 001291 409 RELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKS--- 485 (1106)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 485 (1106)
++++.+||+++||.||++.++|||+.+++++.++ +++... +.....+.+++.++|+.++.++++.++++.+.+..
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~-e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGY-EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccc-cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999887543 222111 11123568899999999887776665544322110
Q ss_pred ------------ccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccc
Q 001291 486 ------------KSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTD 553 (1106)
Q Consensus 486 ------------~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~ 553 (1106)
...+.....+.|..++|.|+++|++|+++.++||+..++.++++.+++|+++|++||+++.+ ..+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~---~~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKN---TSD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---chh
Confidence 00011223456889999999999999999999999999999999999999999999987643 235
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCch
Q 001291 554 GGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNA 633 (1106)
Q Consensus 554 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 633 (1106)
.+.+.|++||++++.++.++.++..++.+|++|+|||..++|++++|++|+.+.++|+.++.+++|++|+|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 67789999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHH
Q 001291 634 GRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILA 713 (1106)
Q Consensus 634 ~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~ 713 (1106)
++||.+++++++...++.++++++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||+.|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccccc--C----------------------CCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 001291 714 NEFLGHSWKKFT--P----------------------TSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFAL 769 (1106)
Q Consensus 714 nef~~~~~~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l 769 (1106)
|||.+..+.|.. | +.....|.++|+. .+.....|+|.+++++++|+++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 0123478888885 33445678999999999999999999999
Q ss_pred HHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCCc--ccccccCCCccCCCcCC--CCCceee
Q 001291 770 ALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSS--LTEAEASHPKKRGMVLP--FEPYSLT 845 (1106)
Q Consensus 770 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~--~~~~~l~ 845 (1106)
++.|.++.......+.......... .+.....+......++..... ....+..... .....| .....+.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRA------KKAGETSASNKNDIEAGEVLGSTDLTDESDDVN-DEKDMEKESGEDIFH 761 (1394)
T ss_pred HHHhccccCCCCceEeeccccccch------hhcccccccccccccccccCCCCcccccccccc-ccccccccCCCceEE
Confidence 9999886544332222111000000 000000000000111110000 0000000000 000001 1123578
Q ss_pred ecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEcCccCCh
Q 001291 846 FDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQ 924 (1106)
Q Consensus 846 f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~ 924 (1106)
|+|++|.++.+ .+++.+|+|||+++++||++||+||||||||||+++|+|+.+++ +.+|+|.+||.+...
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999987532 13457999999999999999999999999999999999987643 457999999998753
Q ss_pred hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001291 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1106)
Q Consensus 925 ~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl 1004 (1106)
.+++.+|||+|++.+.+.+||+|++.|++.++.+.....+++++.++++++.++|.++.|+.++.++. +|||||||||
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHH
Confidence 46778999999999999999999999998888665555666677899999999999999999886654 7999999999
Q ss_pred HHHHHHhcCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1005 TIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1005 ~iA~aL~~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
+||+||+.+|+ ||||||||||||+.++..|+++|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+.++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 99999999999999999999999999888999999999999656788999999999889999999999
Q ss_pred chhHHHHHHHhCCCC
Q 001291 1084 HSCHLISYFEVCPDA 1098 (1106)
Q Consensus 1084 ~~~~~~~yf~~~~g~ 1098 (1106)
+++++++||++ .|+
T Consensus 991 ~~~~~~~yf~~-~G~ 1004 (1394)
T TIGR00956 991 NSHTIINYFEK-HGA 1004 (1394)
T ss_pred ccchHHHHHHh-cCC
Confidence 99999999996 565
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-84 Score=783.89 Aligned_cols=585 Identities=30% Similarity=0.492 Sum_probs=491.8
Q ss_pred CCcceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCCHHH
Q 001291 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193 (1106)
Q Consensus 114 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1106)
...++++|+|+++++... .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346789999999997642 11 4578999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhc
Q 001291 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273 (1106)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~ 273 (1106)
||++|+|+..+...++|+|++||++......++.+|||.|+|.++|++||+|+|.|++.++-.. +++
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~-------~~~------ 138 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPS-------SLS------ 138 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCC-------CCC------
Confidence 9999999998766789999999988776667889999999999999999999999999987431 111
Q ss_pred CCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 001291 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1106)
Q Consensus 274 ~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsg 353 (1106)
.++.+.+++.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 139 ------------------~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 139 ------------------KEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 23345689999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHH
Q 001291 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 354 LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1106)
||+.++.++++.|+++|+. |+|+|++||||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHH
Q 001291 434 QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSREL 513 (1106)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~ 513 (1106)
.++.+..++.+..... .........++......+.......... + ..........++|.|+..+++|.+
T Consensus 280 l~l~s~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA------VRIAKLINKFSQTDNLKKTLEALEKSLS----T-SKKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHhH------HHHHHHhhhccccchhhhhHHHHhhhcc----c-ccccccccCCcHHHHHHHHHHHHh
Confidence 9987743110000000 0000001111100000000000000000 0 000001116789999999999999
Q ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHHhHHH-HHHHHhhhchhhHHhhhc
Q 001291 514 LLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFA-EISMTIVKLPVFYKQRDF 592 (1106)
Q Consensus 514 l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~vf~kqr~~ 592 (1106)
...+|++..+..|++|.+.+++++|++||+.+.... ......|++||.+.+..+.... .++.+..++++|.||+..
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 999999999999999999999999999998754332 3346788888888888776655 588899999999999999
Q ss_pred CCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Q 001291 593 KFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGS 672 (1106)
Q Consensus 593 ~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~ 672 (1106)
++|+.++|++++.+.++|+.++.+++|++++|||+|+.++..+|+.++++.++..+++.+++.+++++.++...|.++++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCcccccC--CCccchHHHHhhcccccccchhhH
Q 001291 673 FAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTP--TSTESLGVQVLESREFFAHAYWYW 750 (1106)
Q Consensus 673 ~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~~~w 750 (1106)
.+++.+++|+||+++.+.||.||.|+.|+|+++|++++++.|+|.+....|... ..+...+.++++..++... ..|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDS--SFW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCccc--ccc
Confidence 999999999999999999999999999999999999999999999743444332 3456678888888887544 467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 001291 751 LGLGALFGFILLLNVGFALALTFLN 775 (1106)
Q Consensus 751 ~~~~~l~~~~~~f~i~~~l~L~~~~ 775 (1106)
.++.++++++++|.++++++|++..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=781.08 Aligned_cols=570 Identities=25% Similarity=0.401 Sum_probs=481.1
Q ss_pred cccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCC
Q 001291 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1106)
+.++++|+|+|++++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44678999999999999999999999999999999999998876556899999999876444467899999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc-
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM- 320 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 320 (1106)
||+|||.|+++++.... .. .++....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~-------~~------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRR-------VT------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCC-------CC------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999987753210 00 11223468889999999999999999864
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
.+||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 689999999999999999999999999999999999999999999999875 5889999999999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC
Q 001291 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1106)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1106)
|+++|+|+++++.+||+++||+||++.+++||+.++.+...... .......+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSE-------NESRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccc-------cchHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 99999999999999999999999999999999999876432210 00112234555666655544443332221
Q ss_pred Cccccc---cccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhH
Q 001291 481 PFDKSK---SHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557 (1106)
Q Consensus 481 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~ 557 (1106)
....+. ..........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+ ..+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~---~~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT---QKGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCC---HHHHHHH
Confidence 111000 0000112245778999999999999999999999999999999999999999999976543 2345566
Q ss_pred HHHHHHHHHHHHHhHH-HHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHH
Q 001291 558 AGALFFTIVMPLFSGF-AEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRF 636 (1106)
Q Consensus 558 ~g~lff~l~~~~~~~~-~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf 636 (1106)
.|++|+.++...+.++ ..+..+..++++|+|||..++|++++|++++.+.++|+.++.+++|++++|||+|+.+++++|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8899999888887765 445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhh
Q 001291 637 FKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716 (1106)
Q Consensus 637 ~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef 716 (1106)
|.++++.+++..++.++++++++++++..+|..+++++++++++|+||+++.++||.||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCc-ccccCCC---ccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001291 717 LGHSW-KKFTPTS---TESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLN 775 (1106)
Q Consensus 717 ~~~~~-~~~~~~~---~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~ 775 (1106)
.+..+ .|...+. +...|.++++.+++... ++|.+++++++++++|.++++++|++..
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~~ 613 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIRI 613 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98765 3432111 23458899998887653 4588999999999999999999998753
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-82 Score=774.82 Aligned_cols=609 Identities=21% Similarity=0.350 Sum_probs=470.5
Q ss_pred CCcceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCCHHH
Q 001291 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTT 193 (1106)
Q Consensus 114 ~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 193 (1106)
.++++++|.|++|.+.......+... .......-....++..+. ..+++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~-~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQI-QERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccccC-CCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45799999999999864310111100 000000000000111111 2467999999999999999999999999999
Q ss_pred HHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhc
Q 001291 194 LLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273 (1106)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~ 273 (1106)
||++|+|+++|+ ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.... ..
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LT------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CC------
Confidence 999999998874 3589999999987532 23569999999999999999999999876542100 00
Q ss_pred CCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCC
Q 001291 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTG 353 (1106)
Q Consensus 274 ~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsg 353 (1106)
.++....++++++.+||++++||.||+...++|||||||||+||++|+.+|+||||||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 01123457889999999999999999988999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHH
Q 001291 354 LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 354 LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1106)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+++++.+||+++||.||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5788999888888889999999999999999999999999999999999999999999999
Q ss_pred HhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC---Cccccc-----cccc-cccCCcccccHHHH
Q 001291 434 QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT---PFDKSK-----SHRA-ALTTKVYGVGKREL 504 (1106)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~-~~~~~~~~~~~~~~ 504 (1106)
.++.+...+.+.....+.+ ...+.+.+.|+... .....+.... +..... ..+. ......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998754321100000001 11223333443211 1111000000 000000 0000 00112345689999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHH-hHHHHHHHHhhhc
Q 001291 505 LKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLF-SGFAEISMTIVKL 583 (1106)
Q Consensus 505 ~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~-~~~~~~~~~~~~~ 583 (1106)
+..+++|.++. +|+..+...|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ ..+..++.+..++
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78888888999999999999999999763 23467788999999877665 5567788888999
Q ss_pred hhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001291 584 PVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRN 663 (1106)
Q Consensus 584 ~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~ 663 (1106)
++|+|||.+++|++++|++|+.+.++|+.++.+++|++++|||+|+.+++++||.++++++++..++++++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCc-----ccccCCCccchHHHHhh
Q 001291 664 LVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSW-----KKFTPTSTESLGVQVLE 738 (1106)
Q Consensus 664 ~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~-----~~~~~~~~~~~g~~~l~ 738 (1106)
+.+|+.+++++++++++|+||+++ +||.||+|++|+||++|++++++.|||.+.+. .|..+......+..++.
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~ 623 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVE 623 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccch
Confidence 999999999999999999999996 79999999999999999999999999976532 33221100000011222
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001291 739 SREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLN 775 (1106)
Q Consensus 739 ~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~ 775 (1106)
...+. ....|.+++++++++++|+++++++|++.+
T Consensus 624 ~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 624 EDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11221 234788999999999999999999997654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=811.52 Aligned_cols=595 Identities=22% Similarity=0.376 Sum_probs=497.8
Q ss_pred CCCCCcceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCC
Q 001291 111 GIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSG 190 (1106)
Q Consensus 111 ~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 190 (1106)
.++..++.+.|+||+|+++.....+. ......++.+|+|||+.++||++++|+||||||
T Consensus 860 ~~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaG 918 (1470)
T PLN03140 860 VLPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAG 918 (1470)
T ss_pred ccCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCC
Confidence 34566678999999999875321000 011123457999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHH
Q 001291 191 KTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRRE 270 (1106)
Q Consensus 191 KSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e 270 (1106)
|||||++|+|+.++ ...+|+|.+||++......++.+|||+|+|.|++.+||+|||.|++.++.... ..
T Consensus 919 KTTLL~~LaG~~~~-g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~--- 987 (1470)
T PLN03140 919 KTTLMDVLAGRKTG-GYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VS--- 987 (1470)
T ss_pred HHHHHHHHcCCCCC-CcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CC---
Confidence 99999999999764 24589999999887543345679999999999999999999999876542100 00
Q ss_pred HhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecC
Q 001291 271 KAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEI 350 (1106)
Q Consensus 271 k~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEp 350 (1106)
.++....++++++.+||++++|+.||+...+||||||||||+||++|+.+|++||||||
T Consensus 988 ---------------------~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEP 1046 (1470)
T PLN03140 988 ---------------------KEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEP 1046 (1470)
T ss_pred ---------------------HHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 01123457889999999999999999877789999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC-CeEEEEcCH----HHHHHHHHhc-CC-CC
Q 001291 351 STGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD-GQIVYQGPR----ELVLEFFESM-GF-KC 423 (1106)
Q Consensus 351 tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~ 423 (1106)
|+|||+.++..+++.|++++. .++|+|+++|||..+++++||++++|++ |+++|+||. +++.+||+++ |+ +|
T Consensus 1047 TsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~ 1125 (1470)
T PLN03140 1047 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKI 1125 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCC
Confidence 999999999999999999875 4789999999998889999999999996 899999996 6899999998 66 49
Q ss_pred CCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhh---cCCccccccccccccCCccccc
Q 001291 424 PKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDEL---QTPFDKSKSHRAALTTKVYGVG 500 (1106)
Q Consensus 424 p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 500 (1106)
|+..|||||+.++++..... ....++++.|+.++..+...+.+ ..+... .+.......|..+
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s 1190 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPG---ASDLYFATQYSQS 1190 (1470)
T ss_pred CCCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCC---ccccccCccccCC
Confidence 99999999999987643211 11235778888777665554333 222111 1111123568899
Q ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHHhHHH-HHHHH
Q 001291 501 KRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFA-EISMT 579 (1106)
Q Consensus 501 ~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~ 579 (1106)
+|.|++.|++|+++.++|++.++..|+++.+++|+++|++||+.+.+..+..+.+...|++|+++++..+.... .++.+
T Consensus 1191 ~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~ 1270 (1470)
T PLN03140 1191 TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMV 1270 (1470)
T ss_pred HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765555566667789999988887776554 45677
Q ss_pred hhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001291 580 IVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659 (1106)
Q Consensus 580 ~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~ 659 (1106)
..+|++|+|||..++|++++|++|+.+.++|+.++.+++|++++|||+||.++++.||.++++.++...++.++++++++
T Consensus 1271 ~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a 1350 (1470)
T PLN03140 1271 AVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVS 1350 (1470)
T ss_pred HHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCcccccCCC-ccchHHHH-h
Q 001291 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTS-TESLGVQV-L 737 (1106)
Q Consensus 660 i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~-l 737 (1106)
++++..+|..+++++..++++|+||++++++||.||+|+||+||+.|++++++.|||.+....|.+++. ....+.++ +
T Consensus 1351 ~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1430 (1470)
T PLN03140 1351 LTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQ 1430 (1470)
T ss_pred HCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988776655542 12234444 6
Q ss_pred hcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001291 738 ESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQ 776 (1106)
Q Consensus 738 ~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~ 776 (1106)
+.+|+. ..|.|.+++++++|+++|.+++++++++++.
T Consensus 1431 ~~~g~~--~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1431 DHYGYD--PDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred HhcCcC--cccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 667775 4578889999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-79 Score=750.35 Aligned_cols=792 Identities=21% Similarity=0.267 Sum_probs=433.9
Q ss_pred CCCccccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCC
Q 001291 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
+|+| ++..||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|.++.++.. +.++|.|+|+
T Consensus 360 YPsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~Qe 435 (1228)
T KOG0055|consen 360 YPSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQE 435 (1228)
T ss_pred CCCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeec
Confidence 3454 3678999999999999999999999999999999999999998 9999999999987654 4789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
|.+| ..||+|||.|+.. |.+.+...+++ +.++..--+..|++..||
T Consensus 436 PvlF-~~tI~eNI~~G~~-------------------------dat~~~i~~a~--------k~ana~~fi~~lp~g~~T 481 (1228)
T KOG0055|consen 436 PVLF-ATTIRENIRYGKP-------------------------DATREEIEEAA--------KAANAHDFILKLPDGYDT 481 (1228)
T ss_pred hhhh-cccHHHHHhcCCC-------------------------cccHHHHHHHH--------HHccHHHHHHhhHHhhcc
Confidence 9665 5799999999742 11111111111 112222334568888999
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.||+.. -.|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|.+.. .|+|+|+ +.|..+.+-+ +|+
T Consensus 482 ~vge~g-~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~ 556 (1228)
T KOG0055|consen 482 LVGERG-VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADK 556 (1228)
T ss_pred cccCCC-CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCE
Confidence 999833 3399999999999999999999999999999999999999999998753 4667766 4566665555 999
Q ss_pred EEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCCh-hHHH--HhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhh
Q 001291 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGV-ADFL--QEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVG 471 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~-ad~l--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1106)
|++|++|+||+.|.++|+... . +. ++.+ |+....++. ..+..+ . .++.....+.+...
T Consensus 557 I~v~~~G~IvE~G~h~ELi~~----------~-G~Y~~lv~~Q~~~~~~~~-~~~~~~-~------~~~~~~s~~~s~~~ 617 (1228)
T KOG0055|consen 557 IAVMEEGKIVEQGTHDELIAL----------G-GIYSSLVRLQELEKAAED-EEEEES-L------KEERSRSLKSSSSS 617 (1228)
T ss_pred EEEEECCEEEEecCHHHHHhc----------c-chHHHHHHHHhhhhhhhc-cccccc-h------hhhhhhcccccccc
Confidence 999999999999999999862 1 11 2221 111111110 000000 0 00000000000000
Q ss_pred hhhhh------hh-cCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHH-------HHHHHHH
Q 001291 472 QKLSD------EL-QTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQI-------GSITLVY 537 (1106)
Q Consensus 472 ~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~-------~~~~li~ 537 (1106)
..... .. ..+.+.....+. .......+++..++ ..+.++.+.+.-.+.. .+.++++
T Consensus 618 ~~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k--------~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~ 687 (1228)
T KOG0055|consen 618 PSLSRGSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFK--------LNKPEWPYLLLGSLGAAIRGATYPLFAYVF 687 (1228)
T ss_pred ccccCCcccccccccccccccccccc--ccccccccHHHHHH--------hccchhHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 00000 00 000000000000 00112233333333 2223322222222221 2222333
Q ss_pred HHH---HccccCCCCcccchhhHHHHHHHHHHHHHHh--HHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHH
Q 001291 538 MTL---FFRTKMHKDSVTDGGIYAGALFFTIVMPLFS--GFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPIS 612 (1106)
Q Consensus 538 g~~---f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~--~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~ 612 (1106)
+.+ |+..+ .+..........++|.++....+- .+......+. --.+..++-.
T Consensus 688 s~~~~~f~~~~--~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~--------------------ge~Lt~R~R~- 744 (1228)
T KOG0055|consen 688 SQVLEAFYPPD--DDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIA--------------------GEKLTKRLRS- 744 (1228)
T ss_pred HHHHHHHhCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHH-
Confidence 322 22111 111111111122222222111110 0000000000 0011111111
Q ss_pred HHHHhhHHhhhhhhcccc---CchhHHHHHHH-----HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc
Q 001291 613 FLEPAVWVFLSYYVIGYD---PNAGRFFKQYL-----LLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGF 684 (1106)
Q Consensus 613 ~~~~~i~~~i~Y~~~g~~---~~~~rf~~~~l-----~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf 684 (1106)
..|..+++.=+++- .+.++...++. +--++..-+..++..++++...+.+|..++|-+.++++.+..+
T Consensus 745 ----~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pl 820 (1228)
T KOG0055|consen 745 ----MMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPL 820 (1228)
T ss_pred ----HHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222333323321 11244444432 2223444455566667777777788888888777666654433
Q ss_pred ccCccchhhHHHHHHhhcH---HHHHHHHHHHHhhcCCCcccccCCCccchHHHHhhccccc-------ccchhhHHHHH
Q 001291 685 VLSREEVKKWWKWAYWSSP---VMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFF-------AHAYWYWLGLG 754 (1106)
Q Consensus 685 ~i~~~~ip~~~~w~~~isP---~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~-------~~~~~~w~~~~ 754 (1106)
++-...+.. .++.-.+. -.|.-.+.+.+|-..+-.... .......+++.+.-. ......|.+++
T Consensus 821 l~~~~~~~~--~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~----al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~ 894 (1228)
T KOG0055|consen 821 LILSGYLQK--KFLKGFSKDDKKAYEEASKIAIEAVSNIRTVA----ALCAEEKFMELYKEELEKPRKSSFKRGLISGLG 894 (1228)
T ss_pred HHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321110000 00000000 001111122222211100000 000011111111000 00111233322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCccccccccccc----c-ccccccCcccccCCCCCCCCCcccCCCCcccccccCC
Q 001291 755 ALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESD----E-QDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASH 829 (1106)
Q Consensus 755 ~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 829 (1106)
.-+...++| +.++++++|...+-.......+..... . .....+....+.|+...+..+.......-...+..+.
T Consensus 895 f~~sqs~~~-~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~ 973 (1228)
T KOG0055|consen 895 FGFSQSLLF-FVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDP 973 (1228)
T ss_pred HHHHHHHHH-HHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 222221111 122223333221111111100000000 0 0000001111111111110000000000000000000
Q ss_pred CccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc
Q 001291 830 PKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 909 (1106)
Q Consensus 830 ~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~ 909 (1106)
....+...|-....+.|+||.|+||..+ +.++|+|+|++|++|+.+||||||||||||++.+|-+...
T Consensus 974 ~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd-- 1041 (1228)
T KOG0055|consen 974 DSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD-- 1041 (1228)
T ss_pred CCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--
Confidence 0112222333445799999999998753 5679999999999999999999999999999999987655
Q ss_pred eeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-----
Q 001291 910 YITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----- 981 (1106)
Q Consensus 910 ~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~----- 981 (1106)
+..|.|.|||.+++. ...|+++|.|.|+|.++. .|++||+.|+. . +.+ .+.+.++++..+..
T Consensus 1042 p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~--~---~vs----~~eIi~Aak~ANaH~FI~s 1111 (1228)
T KOG0055|consen 1042 PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS--E---EVS----EEEIIEAAKLANAHNFISS 1111 (1228)
T ss_pred CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC--C---CCC----HHHHHHHHHHhhhHHHHhc
Confidence 468999999999865 356788999999999875 79999999982 1 122 22344555554433
Q ss_pred --cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHH
Q 001291 982 --PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1059 (1106)
Q Consensus 982 --~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~ 1059 (1106)
+=.|..+|..|. +||||||||++|||||++||+||||||+||+||.++.+.|+++|++.. .|||.|+|+|++| .
T Consensus 1112 LP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--T 1187 (1228)
T KOG0055|consen 1112 LPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--T 1187 (1228)
T ss_pred CcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--h
Confidence 334566666665 599999999999999999999999999999999999999999999874 6999999999997 4
Q ss_pred HHhcCeEEEEecCCEEEEEecCC
Q 001291 1060 FEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1060 ~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
.+.||.|.++++ |++++.|+-.
T Consensus 1188 IqnaD~I~Vi~~-G~VvE~GtH~ 1209 (1228)
T KOG0055|consen 1188 IQNADVIAVLKN-GKVVEQGTHD 1209 (1228)
T ss_pred hhcCCEEEEEEC-CEEEecccHH
Confidence 689999999985 7999999743
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-77 Score=750.34 Aligned_cols=780 Identities=21% Similarity=0.247 Sum_probs=452.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .+|||+|.++ +.+.||
T Consensus 533 ~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTv 598 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTV 598 (1381)
T ss_pred CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcH
Confidence 344899999999999999999999999999999999999876 99999999 5999999975 567899
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
||||.|+..+. ..||+.+.+.|.+++|.+++|++| .|.||+ .+-.
T Consensus 599 reNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGE-rGin 643 (1381)
T KOG0054|consen 599 RENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGE-RGIN 643 (1381)
T ss_pred HHhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecC-CccC
Confidence 99999998775 379999999999999999999998 499997 3445
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||++|||++++++|++||+|.|++|+++..+|+ ++++.+ ..++|+|+ ++| .-+..+.+|.|++|++|+
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~--L~~KT~IL-VTH-ql~~L~~ad~Iivl~~G~ 719 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGL--LRGKTVIL-VTH-QLQFLPHADQIIVLKDGK 719 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhh--hcCCEEEE-EeC-chhhhhhCCEEEEecCCe
Confidence 9999999999999999999999999999999999999999 467543 23455555 455 567889999999999999
Q ss_pred EEEEcCHHHHHH---HHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhc
Q 001291 403 IVYQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479 (1106)
Q Consensus 403 iv~~G~~~~~~~---~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1106)
|+..|+++|+.+ .|+.+ ...+. ...+.. .....+.......+. +. +.........+...
T Consensus 720 I~~~Gty~el~~~~~~~~~l-~~~~~------------~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 781 (1381)
T KOG0054|consen 720 IVESGTYEELLKSGGDFAEL-AHEEE------------SEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEKSK 781 (1381)
T ss_pred EecccCHHHHHhcchhHHHH-hhccc------------hhhccc---cccccccccccccch-hh-hhhhhhcccccccc
Confidence 999999999983 33332 00000 000000 000000000000000 00 00000000000000
Q ss_pred CCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHH-HHHHHH----HHHHHHHHHHccccCCCCcc---
Q 001291 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIF-KLIQIG----SITLVYMTLFFRTKMHKDSV--- 551 (1106)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~-~~~~~~----~~~li~g~~f~~~~~~~~~~--- 551 (1106)
.................+.-.|...+..+ ..........+ -+.+.. .++.-++.-|| ++......
T Consensus 782 -~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~-----~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W-~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 782 -DEKEEEDKLVQEEERETGKVSWSVYKKYI-----KAAGGFLLVLLILLLFVLTQVLQIASNYWLSYW-TDDGEDNGTTT 854 (1381)
T ss_pred -cccchhhHHHHHHHHhcCEeeHHHHHHHH-----HhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccccC
Confidence 00000000000000001111111111100 00000010110 011111 11111122222 22111111
Q ss_pred cchh----hHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhc
Q 001291 552 TDGG----IYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVI 627 (1106)
Q Consensus 552 ~~~~----~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~ 627 (1106)
.+.. .|....+...++.++.++....+.+.....++. -+-+.+++.||+||++
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~------------~ml~~Ilrapm~FFdt----------- 911 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHD------------KLLNSILRAPMSFFDT----------- 911 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhCcchhcCC-----------
Confidence 1222 233333333333333333332223222222222 2456788889999775
Q ss_pred cccCchhHHHHHH---------HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhc---c-cCccchhhH
Q 001291 628 GYDPNAGRFFKQY---------LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGF---V-LSREEVKKW 694 (1106)
Q Consensus 628 g~~~~~~rf~~~~---------l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf---~-i~~~~ip~~ 694 (1106)
...||.+++| .+.+.+..++..+..+++.++....+...+..+++.+++++..+ + -...++++.
T Consensus 912 ---TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRL 988 (1381)
T KOG0054|consen 912 ---TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRL 988 (1381)
T ss_pred ---CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 3357777665 45666666677777766666544343333333333333332211 1 111122211
Q ss_pred HHHHHhhcHHHHHHHHHHHHhhcCCCcccccCCCccchHHHHhhc--------ccccccchhhHHHHHHHHHHHHHHHHH
Q 001291 695 WKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLES--------REFFAHAYWYWLGLGALFGFILLLNVG 766 (1106)
Q Consensus 695 ~~w~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~--------~~~~~~~~~~w~~~~~l~~~~~~f~i~ 766 (1106)
- ..-.||++.++...+..--.-+.|.... ..-.+.... +-+.....|+.+.+-.+..+++++..+
T Consensus 989 e--sitRSPi~sh~~Etl~GlsTIRAf~~~~-----rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al 1061 (1381)
T KOG0054|consen 989 E--SITRSPIYSHFSETLQGLSTIRAFGKEE-----RFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAAL 1061 (1381)
T ss_pred h--hcccchHHHhHHHHhcCcceeeeccccH-----HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1124677766665554333333332210 000000000 001112234333333333322222222
Q ss_pred HHHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCC--CCcee
Q 001291 767 FALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPF--EPYSL 844 (1106)
Q Consensus 767 ~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~l 844 (1106)
+++... -.. ..+..+.-...+...-.....+.++...+.|..+.+.+|..++...+.++++....+...+- ....+
T Consensus 1062 ~~vl~~-~~~-~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I 1139 (1381)
T KOG0054|consen 1062 FAVLLP-SGL-ISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEI 1139 (1381)
T ss_pred HHHHcc-CCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeE
Confidence 211110 000 00000000000000000000012222222233334444443332211121111111100111 22368
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.|+|++-+|. .+-..|||||||+|+|||++||||++|||||||+++|.+...+ .+|+|.|||.++.+
T Consensus 1140 ~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~--~~G~I~IDgvdI~~ 1206 (1381)
T KOG0054|consen 1140 EFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP--AEGEILIDGVDISK 1206 (1381)
T ss_pred EEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc--cCCeEEEcCeeccc
Confidence 9999764442 1223699999999999999999999999999999999997653 58999999999865
Q ss_pred ---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCCCC
Q 001291 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG------LPGVNG 995 (1106)
Q Consensus 925 ---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~------~~g~~~ 995 (1106)
.+.|++++.+||+|.++. -|+|.|| |+..+..++.++++||.++|++......+ .+|+.+
T Consensus 1207 igL~dLRsrlsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1207 IGLHDLRSRLSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred ccHHHHHhcCeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 457888999999998764 4665554 77778888899999999999865533221 135567
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
+|.||||.+||||||+++++||+|||+|+++|+++...|+++||+.++ +||||+|+|+++. + ..+|||+||++ |++
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~DrVlVld~-G~v 1351 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSDRVLVLDA-GRV 1351 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcCeEEEeeC-CeE
Confidence 999999999999999999999999999999999999999999999875 7999999999974 4 56899999986 799
Q ss_pred EEEecCCCc
Q 001291 1076 VYVGPLGHH 1084 (1106)
Q Consensus 1076 ~~~G~~~~~ 1084 (1106)
+++|++.+.
T Consensus 1352 ~EfdsP~~L 1360 (1381)
T KOG0054|consen 1352 VEFDSPAEL 1360 (1381)
T ss_pred eecCChHHH
Confidence 999998753
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-77 Score=733.07 Aligned_cols=584 Identities=24% Similarity=0.360 Sum_probs=488.1
Q ss_pred cceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCCCHHHHH
Q 001291 116 TVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL 195 (1106)
Q Consensus 116 ~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL 195 (1106)
+..+.++|+.+-.+.... .+.+..++.+|+||||.++||.+|||||+|||||||||
T Consensus 779 ~~~~~~~~V~~w~dl~~~------------------------~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLL 834 (1391)
T KOG0065|consen 779 PLSLTFKDVFYWVDLPYE------------------------MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLL 834 (1391)
T ss_pred cccccccceEEEEeCCcc------------------------ccccccceEhhhcCceEecCCceeehhcCCCCchHHHH
Confidence 356777887777765321 12233567899999999999999999999999999999
Q ss_pred HHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCC
Q 001291 196 LALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275 (1106)
Q Consensus 196 ~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~ 275 (1106)
++|||+... +.++|+|.+||.+.++...+|.+|||.|+|.|.+++||||.|.|+|.++... ++
T Consensus 835 dvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~-------~v--------- 897 (1391)
T KOG0065|consen 835 DVLAGRKTG-GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPK-------EV--------- 897 (1391)
T ss_pred HHHhcCccc-ceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCC-------cC---------
Confidence 999999755 4689999999999987677899999999999999999999999999887321 12
Q ss_pred CCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCC-ccceeecCCCCC
Q 001291 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA-LALFMDEISTGL 354 (1106)
Q Consensus 276 ~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p-~vllLDEptsgL 354 (1106)
..++..+.||++++.|+|++++|.+||..+ .|||..||||++||..|+.+| .|||||||||||
T Consensus 898 ---------------~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 898 ---------------SDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred ---------------CHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 122344689999999999999999999877 999999999999999999999 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec-CCeEEEEcCHH----HHHHHHHhcC-CCCCCCCC
Q 001291 355 DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS-DGQIVYQGPRE----LVLEFFESMG-FKCPKRKG 428 (1106)
Q Consensus 355 D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~-~G~iv~~G~~~----~~~~~f~~~G-~~~p~~~~ 428 (1106)
|+.++..|++.+|+++. .|+|++|+||||+.++++.||++++|+ +|++||.||.. .+++||++.| .+||...|
T Consensus 962 DsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~~N 1040 (1391)
T KOG0065|consen 962 DSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISDEN 1040 (1391)
T ss_pred cHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCCCC
Confidence 99999999999999987 799999999999999999999999995 79999999974 5678999987 89999999
Q ss_pred hhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhc---CCccccccccccccCCcccccHHHHH
Q 001291 429 VADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ---TPFDKSKSHRAALTTKVYGVGKRELL 505 (1106)
Q Consensus 429 ~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (1106)
||||+.|+++...+.. ...++++.|+.+...++..++++ .+.+. ........+.|..++|.|+
T Consensus 1041 PA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~--~~~~~~~~~~fa~s~~~Q~ 1106 (1391)
T KOG0065|consen 1041 PAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNKELVKELSQPPPG--FSTDLEFKTRFAQSLWYQF 1106 (1391)
T ss_pred hHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHHHHHHHHhcCCcc--CCcccccccccchhHHHHH
Confidence 9999999987543321 12378899999988877766543 33332 1223344566999999999
Q ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHHhHHH-HHHHHhhhch
Q 001291 506 KACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFA-EISMTIVKLP 584 (1106)
Q Consensus 506 ~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~-~~~~~~~~~~ 584 (1106)
+.|++|++...||++.+...|++..++.++++|..||+++ .+.++.++.++++|.++++...+... ..+..-.++-
T Consensus 1107 k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g---~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~ 1183 (1391)
T KOG0065|consen 1107 KLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVG---HNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERL 1183 (1391)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecC---CcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhh
Confidence 9999999999999999999999999999999999999887 34667788889988887766554333 3444556888
Q ss_pred hhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccH
Q 001291 585 VFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNL 664 (1106)
Q Consensus 585 vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~ 664 (1106)
+++|||..++|+..+|+++..++++|+.++.+++|.+++||++||..++.+|+.+++..+++......++.++.+++|+.
T Consensus 1184 y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~ 1263 (1391)
T KOG0065|consen 1184 YEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNL 1263 (1391)
T ss_pred heeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCccccc-------CCCccchHHHHh
Q 001291 665 VVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFT-------PTSTESLGVQVL 737 (1106)
Q Consensus 665 ~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~~~~~-------~~~~~~~g~~~l 737 (1106)
.+|..+.+++..++.+|+||+++++.||.||+|+||+||+.|..++++...+++..-.|.. |....+.|....
T Consensus 1264 ~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~ 1343 (1391)
T KOG0065|consen 1264 QTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFME 1343 (1391)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999977655533 223345666555
Q ss_pred hccc----ccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 001291 738 ESRE----FFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQ 776 (1106)
Q Consensus 738 ~~~~----~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~ 776 (1106)
..++ +..+... ....+.+++.+.+.+++.+.++|.+.
T Consensus 1344 ~~~~~~~Gy~~n~~a--~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1344 DFFGEGTGYLHNPLA--TTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred HHhccCcceeccCcc--eeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 5445 2211110 11122344556666677777777654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-74 Score=756.47 Aligned_cols=559 Identities=24% Similarity=0.341 Sum_probs=458.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
++.+|+|||+.++||++++|+|||||||||||++|+|+.++....+|+|.+||+++.. ..++.++||+|+|.+++.+||
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i~yv~Q~~~~~~~~Tv 853 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSIGYVQQQDLHLPTSTV 853 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcceeeecccccCCCCCCH
Confidence 3579999999999999999999999999999999999987321237999999998753 246789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+|||.|+++++.... .. .++....++++++.+||++++|+.||+. ..+
T Consensus 854 ~E~L~~~a~l~~~~~-------~~------------------------~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~ 901 (1394)
T TIGR00956 854 RESLRFSAYLRQPKS-------VS------------------------KSEKMEYVEEVIKLLEMESYADAVVGVP-GEG 901 (1394)
T ss_pred HHHHHHHHHhCCCCC-------CC------------------------HHHHHHHHHHHHHHcCChhhCCCeeCCC-CCC
Confidence 999999987652110 00 1112346788999999999999999964 347
Q ss_pred CChhhhhHHHHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC-
Q 001291 324 VSGGQKKRVTTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG- 401 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~-vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G- 401 (1106)
|||||||||+||++|+.+|+ ||||||||||||+.++..+++.|+++++ .++|+|+++|||...+++.||+|++|++|
T Consensus 902 LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG 980 (1394)
T TIGR00956 902 LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGG 980 (1394)
T ss_pred CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCC
Confidence 99999999999999999997 9999999999999999999999999875 57899999999988888999999999987
Q ss_pred eEEEEcCH----HHHHHHHHhcCC-CCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhh
Q 001291 402 QIVYQGPR----ELVLEFFESMGF-KCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSD 476 (1106)
Q Consensus 402 ~iv~~G~~----~~~~~~f~~~G~-~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1106)
+++|+|+. +++.+||++.|+ +||++.|||||+.++.+...... ...++.+.|+.+...+...+
T Consensus 981 ~iv~~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~------------~~~~~~~~~~~s~~~~~~~~ 1048 (1394)
T TIGR00956 981 QTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH------------ANQDYHEVWRNSSEYQAVKN 1048 (1394)
T ss_pred EEEEECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc------------hhccHHHHHhcCHHHHHHHH
Confidence 99999997 678999999996 99999999999999876422110 01234556665554443332
Q ss_pred hhc---CCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccc
Q 001291 477 ELQ---TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTD 553 (1106)
Q Consensus 477 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~ 553 (1106)
++. .+.............+.|..+++.|++.+++|.++..+|++.+.+.|+++.+++|+++|++||+.+.+ ..+
T Consensus 1049 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~---~~~ 1125 (1394)
T TIGR00956 1049 ELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQG 1125 (1394)
T ss_pred HHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCC---HHH
Confidence 221 11110000001112246889999999999999999999999999999999999999999999987643 345
Q ss_pred hhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhh-HHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCc
Q 001291 554 GGIYAGALFFTIVMPLFSGFAEISMTIVKLPVF-YKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPN 632 (1106)
Q Consensus 554 ~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf-~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~ 632 (1106)
.+..+|++|+.+++..+.....++.++.++++| +|||.+++|++++|++++.+.++|+.++.+++|.+++|||+|+.++
T Consensus 1126 i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~ 1205 (1394)
T TIGR00956 1126 LQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWN 1205 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCc
Confidence 677888888887766555445566677777764 9999999999999999999999999999999999999999999987
Q ss_pred hhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHH
Q 001291 633 AGR-------FFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVM 705 (1106)
Q Consensus 633 ~~r-------f~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~ 705 (1106)
+.. |+.++++.+++..++.+++.++++++++..+|..++++++.++++|+||++++++||.||+|++|+||++
T Consensus 1206 ~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1206 ASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFT 1285 (1394)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHH
Confidence 755 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCcccccC-------------------------------CC---c----cchHHHHhhcccccccch
Q 001291 706 YAQNGILANEFLGHSWKKFTP-------------------------------TS---T----ESLGVQVLESREFFAHAY 747 (1106)
Q Consensus 706 y~~~al~~nef~~~~~~~~~~-------------------------------~~---~----~~~g~~~l~~~~~~~~~~ 747 (1106)
|++++++.|||.+....|... +. + ...|.++|+..++....
T Consensus 1286 y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~- 1364 (1394)
T TIGR00956 1286 YLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSG- 1364 (1394)
T ss_pred HHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccc-
Confidence 999999999999877655320 00 1 23677788877765444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001291 748 WYWLGLGALFGFILLLNVGFALALTFL 774 (1106)
Q Consensus 748 ~~w~~~~~l~~~~~~f~i~~~l~L~~~ 774 (1106)
.|.+++++++|++++ ++.++++.|.
T Consensus 1365 -~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1365 -RWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred -cccchhhhhHHHHHH-HHHHHhhheE
Confidence 578888899888777 6666777665
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-72 Score=730.26 Aligned_cols=798 Identities=20% Similarity=0.271 Sum_probs=482.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 943 k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~Pt---sG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT---SGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCC---ceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 56999999999999999999999999999999999999998 999999999875321 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+|||.|.++.++... .+.+..++.+++.+||++..|+.+++
T Consensus 1020 V~E~L~f~~~lkg~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~~~---- 1061 (2272)
T TIGR01257 1020 VAEHILFYAQLKGRSW----------------------------------EEAQLEMEAMLEDTGLHHKRNEEAQD---- 1061 (2272)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChhh----
Confidence 9999999877654210 01123467789999999999988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+++|+|++|||||+|||+.++..+++.|+++. . +++|+.++|+.+++..++|+|++|++|+
T Consensus 1062 -LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~-g~TIIltTHdmdea~~laDrI~iL~~Gk 1137 (2272)
T TIGR01257 1062 -LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--S-GRTIIMSTHHMDEADLLGDRIAIISQGR 1137 (2272)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--C-CCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999873 3 4556668899999999999999999999
Q ss_pred EEEEcCHHHHHHHHHhcCCC-------------------------------CCCCC-----------C---hhHHHHhhc
Q 001291 403 IVYQGPRELVLEFFESMGFK-------------------------------CPKRK-----------G---VADFLQEVT 437 (1106)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~-------------------------------~p~~~-----------~---~ad~l~~v~ 437 (1106)
+++.|+.+++.+.|.. ||. ||... + +.++++...
T Consensus 1138 L~~~Gs~~~Lk~~~g~-gy~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~i 1216 (2272)
T TIGR01257 1138 LYCSGTPLFLKNCFGT-GFYLTLVRKMKNIQSQRGGCEGTCSCTSKGFSTRCPARVDEITPEQVLDGDVNELMDLVYHHV 1216 (2272)
T ss_pred EEEecCHHHHHHhcCC-cEEEEEEecccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHhC
Confidence 9999999999876532 332 11000 1 112222211
Q ss_pred Cchhhhhhhh---ccCCCCcccCHHHHHHHHhhchhh------------hhhhhh--------hcC--------------
Q 001291 438 SKKDQEQYWA---HKDRPYRFVKVQEFVAAFQSFHVG------------QKLSDE--------LQT-------------- 480 (1106)
Q Consensus 438 s~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--------~~~-------------- 480 (1106)
.......... .-..|........|...|+.-+.. ....++ ...
T Consensus 1217 P~a~l~~~~g~el~y~LP~~~~~~~~f~~lf~~Le~~~~~lgi~sygis~tTLEeVFlkv~~~~~~~~~~~~~~~~~~~~ 1296 (2272)
T TIGR01257 1217 PEAKLVECIGQELIFLLPNKNFKQRAYASLFRELEETLADLGLSSFGISDTPLEEIFLKVTEDADSGSLFAGGAQQKREN 1296 (2272)
T ss_pred CCcEEEeccCCEEEEEecccccccchHHHHHHHHHhhHhhCCCceEEeecCCHHHHHHHhhhhccccccccccccccccc
Confidence 0000000000 000011111001232322211100 000000 000
Q ss_pred ---------Ccccccc-cc-------c--------------cccCCcc---cccHHHHHHHHHHHHHHHHhcChHHHHHH
Q 001291 481 ---------PFDKSKS-HR-------A--------------ALTTKVY---GVGKRELLKACTSRELLLMKRNSFVYIFK 526 (1106)
Q Consensus 481 ---------~~~~~~~-~~-------~--------------~~~~~~~---~~~~~~~~~~l~~R~~l~~~R~~~~~~~~ 526 (1106)
+.+.... .. . ....... ..-++.|+++++...++..+|++...++.
T Consensus 1297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~L~~qQf~All~KR~~~~~Rd~k~~~~q 1376 (2272)
T TIGR01257 1297 ANLRHPCSGPTEKAGQTPQASHTCSPGQPAAHPEGQPPPEPEDPGVPLNTGARLILQHVQALLVKRFQHTIRSHKDFLAQ 1376 (2272)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000000 00 0 0000000 01256789999999999999998877666
Q ss_pred HHHHHH---HHHHHHHH----------------H------cccc------------------------------------
Q 001291 527 LIQIGS---ITLVYMTL----------------F------FRTK------------------------------------ 545 (1106)
Q Consensus 527 ~~~~~~---~~li~g~~----------------f------~~~~------------------------------------ 545 (1106)
++.-++ +++++..+ | +..+
T Consensus 1377 illPi~fv~lal~~~~~~~~~~~~p~l~Ls~~~Y~~~~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 1456 (2272)
T TIGR01257 1377 IVLPATFVFLALMLSIIIPPFGEYPALTLHPWMYGQQYTFFSMDEPNSEHLEVLADVLLNKPGFGNRCLKEEWLPEYPCG 1456 (2272)
T ss_pred HHHHHHHHHHHHHHHhhcccccCCCCeecchhhccCcceeccccccccccccchhhhhhccccccccccccccccccccc
Confidence 553322 22221110 0 0000
Q ss_pred C------C----------------------------------------------C--------C---ccc--chhhH---
Q 001291 546 M------H----------------------------------------------K--------D---SVT--DGGIY--- 557 (1106)
Q Consensus 546 ~------~----------------------------------------------~--------~---~~~--~~~~~--- 557 (1106)
. + + + ... +...|
T Consensus 1457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~n~sdyll~ 1536 (2272)
T TIGR01257 1457 NSTPWKTPSVSPNITHLFQKQKWTAAHPSPSCRCSTREKLTMLPECPEGAGGLPPPQRTQRSTEILQDLTDRNISDFLVK 1536 (2272)
T ss_pred ccccccccchhHHHHHHHhhccccccccccccccccccccccccccccccccCCCcccccccchhhhhhcccchHHHHhh
Confidence 0 0 0 0 000 00000
Q ss_pred ----------------------------------------HHHH------------------------H-----------
Q 001291 558 ----------------------------------------AGAL------------------------F----------- 562 (1106)
Q Consensus 558 ----------------------------------------~g~l------------------------f----------- 562 (1106)
.++. |
T Consensus 1537 ~~~~~~~~~~~~~~~~~~~ry~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1616 (2272)
T TIGR01257 1537 TYPALIRSSLKSKFWVNEQRYGGISIGGKLPAIPITGEALVGFLSDLGQMMNVSGGPVTREASKEMPDFLKHLETEDNIK 1616 (2272)
T ss_pred hhhhhhccccccccccccccccccccccccccccccchhhhhhhhhcccccccccccccccccchhhhhhhccccCcceE
Confidence 0000 0
Q ss_pred --H---------HHHHHHHhHH----------------------------------------------------HHHHHH
Q 001291 563 --F---------TIVMPLFSGF----------------------------------------------------AEISMT 579 (1106)
Q Consensus 563 --f---------~l~~~~~~~~----------------------------------------------------~~~~~~ 579 (1106)
| ..+..+.+++ +-++..
T Consensus 1617 vwfNn~~~Hs~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~as 1696 (2272)
T TIGR01257 1617 VWFNNKGWHALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPAS 1696 (2272)
T ss_pred EEEcCCcccHHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 0 0000000000 000001
Q ss_pred hhhchhhHHhhhcC--------CcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhh--ccccCchhHHHHHHHHHHHHHHH
Q 001291 580 IVKLPVFYKQRDFK--------FFPPWAYAIPSWILKIPISFLEPAVWVFLSYYV--IGYDPNAGRFFKQYLLLLAFNQM 649 (1106)
Q Consensus 580 ~~~~~vf~kqr~~~--------~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~--~g~~~~~~rf~~~~l~~~~~~~~ 649 (1106)
+.-.+| +||..+ =-++.+|++++++.++.+-++..++..++++.. -+|. +...+...++++++...+
T Consensus 1697 fv~~~V--~ER~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a 1773 (2272)
T TIGR01257 1697 FVLYLI--QERVNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWA 1773 (2272)
T ss_pred Hheeee--hHHhhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHH
Confidence 111111 222221 126788999999999888777666555444322 1222 223454555667777777
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHH---HHHHHhhc----ccC---ccchhhHHHHHHhhcHHHHHHHHHHH---Hhh
Q 001291 650 ISGLFRFLGAIGRNLVVAYTFGSFAVL---VLLALGGF----VLS---REEVKKWWKWAYWSSPVMYAQNGILA---NEF 716 (1106)
Q Consensus 650 ~~~l~~~i~~i~~~~~ia~~~~~~~~l---~~~l~~Gf----~i~---~~~ip~~~~w~~~isP~~y~~~al~~---nef 716 (1106)
+..+.++++-++.+...|+....++.+ ++..+..| +-. ...+...+.|++.+.|.+---+++.. +..
T Consensus 1774 ~ip~tYl~SflF~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~ 1853 (2272)
T TIGR01257 1774 VIPMMYPASFLFDVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQA 1853 (2272)
T ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHH
Confidence 777778877777766555443221111 11111112 111 12234677888888886544344321 111
Q ss_pred cCCCcccccCCCccchHHHHhhcccccccchhhHHHHH----HHHHH-HHHHHHHHHHHHHhccccCCCccccccccccc
Q 001291 717 LGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLG----ALFGF-ILLLNVGFALALTFLNQFEKPRAVITEEFESD 791 (1106)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~----~l~~~-~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~ 791 (1106)
....+.. .+.. .....|-|-.+| +++.. +++|.++..+-..+... +....... .
T Consensus 1854 ~~~~~~~--------~~~~-------~~~~~~~~~~~g~~ll~m~~~~iv~flLl~~ie~~~~~~----~~~~~~~~--~ 1912 (2272)
T TIGR01257 1854 VTDVYAQ--------FGEE-------HSANPFQWDLIGKNLVAMAVEGVVYFLLTLLIQHHFFLS----RWIAEPAK--E 1912 (2272)
T ss_pred HHHHHHh--------hccc-------ccCCccchhhccHHHHHHHHHHHHHHHHHHHHHhhhhhh----hhccccCc--C
Confidence 0000000 0000 000112222111 11111 11111111111111100 00000000 0
Q ss_pred cccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEE
Q 001291 792 EQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVL 871 (1106)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~ 871 (1106)
. ... +..+...+.. ....+ ......+.++|+++.++. +++.+
T Consensus 1913 -------~------------~~~----eD~DV~~Er~-rV~~~---~~~~~~L~v~nLsK~Y~~-----------~~~~a 1954 (2272)
T TIGR01257 1913 -------P------------IFD----EDDDVAEERQ-RIISG---GNKTDILRLNELTKVYSG-----------TSSPA 1954 (2272)
T ss_pred -------c------------CCC----chhHHHHHHH-HHhcc---CCCCceEEEEEEEEEECC-----------CCceE
Confidence 0 000 0000000000 00000 001124788898877641 12569
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHHHH
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+|||+|++.+.+.+|++|+
T Consensus 1955 L~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~ 2032 (2272)
T TIGR01257 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREH 2032 (2272)
T ss_pred EEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHH
Confidence 9999999999999999999999999999999998764 48999999988642 2235679999999999999999999
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+.+.+.++. ...++.++.++++++.++|.+..++.++ +|||||||||+||+||+.+|+||||||||+|||+.
T Consensus 2033 L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~ 2104 (2272)
T TIGR01257 2033 LYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQ 2104 (2272)
T ss_pred HHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHH
Confidence 988766553 2334445668899999999988887753 69999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
+++.+++.|++++++|+|||+|||+++ ++...|||+++|++ |++++.|+..
T Consensus 2105 sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~q 2155 (2272)
T TIGR01257 2105 ARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999878999999999997 67888999999985 7999998764
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-71 Score=731.92 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=178.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+++|+. +..++|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 36999999998842 123699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~ 991 (1106)
+++ ..+|+.++||||++.++. -|++|||.++. +..++.++++++.+++.+..+ ..++..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~-GTIreNLd~~~----------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFS-GTVRFNLDPFN----------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCcccc-ccHHHHhCcCC----------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 754 456788999999999886 59999996531 113445788888888865443 333433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||.++.+.|++.|++.. +++|||+|+|+++. ...||+|++|++
T Consensus 1372 G-~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t--I~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 G-ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT--IIDCDRILVLDA 1447 (1622)
T ss_pred C-CCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH--HHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999985 48999999999973 567999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|++.+
T Consensus 1448 -G~IvE~Gt~~e 1458 (1622)
T PLN03130 1448 -GRVVEFDTPEN 1458 (1622)
T ss_pred -CEEEEeCCHHH
Confidence 79999998653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-70 Score=724.11 Aligned_cols=212 Identities=21% Similarity=0.287 Sum_probs=177.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++|+||+++|+. +..++|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEEh
Confidence 6899999998841 124699999999999999999999999999999999998764 589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~g 992 (1106)
++ ..+++.++||||++.+++ -|++|||.++. + ..++.++++++..++.+..+ ..++..|
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~-gTIr~NL~~~~------~----~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1369 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFS-GTVRFNIDPFS------E----HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGG 1369 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeC-ccHHHHcCCCC------C----CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCC
Confidence 54 456788999999998886 59999996431 1 22345788899888876443 3334333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1370 -~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1370 -ENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred -CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999999999875 4899999999986 3567999999985
Q ss_pred CEEEEEecCCC
Q 001291 1073 GREVYVGPLGH 1083 (1106)
Q Consensus 1073 G~~~~~G~~~~ 1083 (1106)
|++++.|++.+
T Consensus 1445 G~ivE~Gt~~e 1455 (1495)
T PLN03232 1445 GQVLEYDSPQE 1455 (1495)
T ss_pred CEEEEECCHHH
Confidence 79999998653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-68 Score=610.29 Aligned_cols=475 Identities=28% Similarity=0.345 Sum_probs=362.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC-CCceeEEEECCccCCCCCc-------cceEEEEcCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1106)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999886 4568999999997654432 26799999995
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 236 -NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
.+-|-+||.+.|.-..+.++... .++...++.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 46677999998887665543211 12234567788999999987665
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
+.+...|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.+ ..++.++.++|+..-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~-e~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQR-ELGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHH-HcCcEEEEEcCCHHHHHHhcCe
Confidence 345567999999999999999999999999999999999999999999999875 4678888899999999999999
Q ss_pred EEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhh
Q 001291 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKL 474 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1106)
|+||.+|++|+.|+.++++.. |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 01100 00
Q ss_pred hhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccch
Q 001291 475 SDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDG 554 (1106)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~ 554 (1106)
.+
T Consensus 255 l~------------------------------------------------------------------------------ 256 (539)
T COG1123 255 LA------------------------------------------------------------------------------ 256 (539)
T ss_pred Hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchh
Q 001291 555 GIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAG 634 (1106)
Q Consensus 555 ~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1106)
..|.....
T Consensus 257 ---------------------------a~p~~~~~--------------------------------------------- 264 (539)
T COG1123 257 ---------------------------AVPRLGDE--------------------------------------------- 264 (539)
T ss_pred ---------------------------hCCCcccc---------------------------------------------
Confidence 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHH
Q 001291 635 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILAN 714 (1106)
Q Consensus 635 rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~n 714 (1106)
T Consensus 265 -------------------------------------------------------------------------------- 264 (539)
T COG1123 265 -------------------------------------------------------------------------------- 264 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 001291 715 EFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQD 794 (1106)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~ 794 (1106)
..
T Consensus 265 -------~~----------------------------------------------------------------------- 266 (539)
T COG1123 265 -------KI----------------------------------------------------------------------- 266 (539)
T ss_pred -------cc-----------------------------------------------------------------------
Confidence 00
Q ss_pred ccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeee
Q 001291 795 NRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNG 874 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~ 874 (1106)
. . ... . . . .+ ...-++.+|++-.|..+..+- +...+...+++|
T Consensus 267 --~-~------------~~~-----~----~--~--------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~ 309 (539)
T COG1123 267 --I-R------------LPR-----R----G--P--------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDD 309 (539)
T ss_pred --c-c------------ccc-----c----c--c--------cc-cCceeEeeeeeeeeccccccc--cccccceeeeee
Confidence 0 0 000 0 0 0 00 001234445443333322110 000123569999
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC--C---hhcccceEEEEccCCC--CCCCCCHH
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK--K---QETFARISGYCEQNDI--HSPFVTVY 947 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~g~v~q~~~--~~~~~tv~ 947 (1106)
|||++++||++||||+||||||||.++|+|..++ ..|.|.++|.+. . ....++.+-+++|++. +.|.+||.
T Consensus 310 VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~ 387 (539)
T COG1123 310 VSFDLREGETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVG 387 (539)
T ss_pred eeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHH
Confidence 9999999999999999999999999999998774 589999999762 1 1224456778888775 56889999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
+.+.-...... .....++++++.++++.++|.+ +.++. +.+||||||||++|||||+.+|++|++|||||.|
T Consensus 388 ~~i~epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaL 460 (539)
T COG1123 388 DILAEPLRIHG--GGSGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSAL 460 (539)
T ss_pred HHHHhHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCcccc
Confidence 99876544332 2224566678999999999986 45554 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+..++.|.++|+++.++ |.|.|+||||+.. +...|||+++|++ |++|+.|+..
T Consensus 461 Dvsvqa~VlnLl~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~~ 515 (539)
T COG1123 461 DVSVQAQVLNLLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPTE 515 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCHH
Confidence 999999999999999765 9999999999985 7788999999985 7999999643
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-68 Score=695.70 Aligned_cols=217 Identities=18% Similarity=0.312 Sum_probs=179.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-------------
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------- 909 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~------------- 909 (1106)
.+.|+||+|+|+.. ++.++|+|+||+|+||+++||+||||||||||+++|+|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 69999999998642 1246999999999999999999999999999999999976541
Q ss_pred ---------------------------------------eeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001291 910 ---------------------------------------YITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 910 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+.+|.|.+||.++++ ..+++.+|||+|++.++ ..|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHH
Confidence 148999999998754 45678899999999887 48999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLD 1020 (1106)
|||.|+. .+. .++.++++++..++.++. |..+|..| ..||||||||++|||||+++|+|||||
T Consensus 1314 eNI~~g~-----~~a----t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK-----EDA----TREDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC-----CCC----CHHHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999872 122 233477788887776543 44555444 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecC---CE-EEEEecCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG---GR-EVYVGPLG 1082 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g---G~-~~~~G~~~ 1082 (1106)
||||+||+++++.|++.|+++. .+|+|+|+|+|+++ ..+.||+|++|++| |+ +++.|+..
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth~ 1448 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTHE 1448 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCHH
Confidence 9999999999999999999985 35899999999986 46789999999973 66 45788743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-68 Score=706.43 Aligned_cols=213 Identities=18% Similarity=0.230 Sum_probs=178.3
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+++|+.. ..++|+||||+|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~--~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES--AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC--CCCeEEECCEE
Confidence 369999999988531 23599999999999999999999999999999999998763 57999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+++ ..+++.++||||++.++. -|++|||.... +..++.++++++.+++.+.. |..++..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~-gTIr~NLdp~~----------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFS-GSLRMNLDPFS----------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccC-ccHHHHcCccc----------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 764 456788999999999886 59999995211 12234578899998887644 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1419 G-~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 G-ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999875 4899999999986 4577999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|++.+
T Consensus 1495 -G~IvE~G~~~e 1505 (1522)
T TIGR00957 1495 -GEVAEFGAPSN 1505 (1522)
T ss_pred -CEEEEECCHHH
Confidence 79999998654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-66 Score=625.03 Aligned_cols=459 Identities=22% Similarity=0.308 Sum_probs=349.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTY---EGEIIFEGEELQASNIRDTERAGIAIIHQELALV 94 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHHCCeEEEEeccccC
Confidence 3699999999999999999999999999999999999986 5 8999999998764332 35699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+......+. .. ..+....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~e~l~~~~~~~~~~~-------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 143 (506)
T PRK13549 95 KELSVLENIFLGNEITPGGI-------MD------------------------YDAMYLRAQKLLAQLKLDINPATPVGN 143 (506)
T ss_pred CCCcHHHHhhhcccccccCC-------cC------------------------HHHHHHHHHHHHHHcCCCCCcccchhh
Confidence 99999999998753211000 00 001123467789999999888888766
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||+|++|
T Consensus 144 -----LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l 216 (506)
T PRK13549 144 -----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVI 216 (506)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999998853 3 456677889999999999999999
Q ss_pred cCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhh
Q 001291 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDEL 478 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (1106)
++|++++.|+.+++.. .+..
T Consensus 217 ~~G~i~~~~~~~~~~~--------------------------------------------~~~~---------------- 236 (506)
T PRK13549 217 RDGRHIGTRPAAGMTE--------------------------------------------DDII---------------- 236 (506)
T ss_pred ECCEEeeecccccCCH--------------------------------------------HHHH----------------
Confidence 9999998876432200 0000
Q ss_pred cCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHH
Q 001291 479 QTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYA 558 (1106)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~ 558 (1106)
+ .++ + ..
T Consensus 237 --------------------------------~----------------------------~~~--~--~~--------- 243 (506)
T PRK13549 237 --------------------------------T----------------------------MMV--G--RE--------- 243 (506)
T ss_pred --------------------------------H----------------------------Hhh--C--cC---------
Confidence 0 000 0 00
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHH
Q 001291 559 GALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFK 638 (1106)
Q Consensus 559 g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~ 638 (1106)
.
T Consensus 244 ------------------------------------------------------------------------~------- 244 (506)
T PRK13549 244 ------------------------------------------------------------------------L------- 244 (506)
T ss_pred ------------------------------------------------------------------------c-------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcC
Q 001291 639 QYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLG 718 (1106)
Q Consensus 639 ~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~ 718 (1106)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccccc
Q 001291 719 HSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIG 798 (1106)
Q Consensus 719 ~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1106)
. . ...
T Consensus 245 ---~------~----------------------------------------------~~~-------------------- 249 (506)
T PRK13549 245 ---T------A----------------------------------------------LYP-------------------- 249 (506)
T ss_pred ---c------c----------------------------------------------ccc--------------------
Confidence 0 0 000
Q ss_pred CcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeee
Q 001291 799 GTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGA 878 (1106)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~ 878 (1106)
. . . . .. + .+ .+.++|+++.++. .+++.+|+|+||+
T Consensus 250 ~------------~-------~----~----~~--~-----~~-~l~~~~l~~~~~~----------~~~~~vl~~vsl~ 284 (506)
T PRK13549 250 R------------E-------P----H----TI--G-----EV-ILEVRNLTAWDPV----------NPHIKRVDDVSFS 284 (506)
T ss_pred c------------c-------c----c----CC--C-----Cc-eEEEecCcccccc----------ccccccccceeeE
Confidence 0 0 0 0 00 0 00 2456666654421 0123589999999
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHH
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLF 951 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~---~~~~~~tv~e~l~ 951 (1106)
|++||++||+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|++ .+++.+|+.||+.
T Consensus 285 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~ 363 (506)
T PRK13549 285 LRRGEILGIAGLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNIT 363 (506)
T ss_pred EcCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhh
Confidence 999999999999999999999999997642 147999999976532 12244689999985 3567899999998
Q ss_pred HhhhhcCC--CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 952 YSAWLRLP--PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 952 ~~~~~~~~--~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
++...... .....+..++.++++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+|||+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~ 438 (506)
T PRK13549 364 LAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438 (506)
T ss_pred hhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCH
Confidence 75321111 0012233445688999999996 4566654 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCc
Q 001291 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH 1084 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~ 1084 (1106)
.+++.++++|++++++|+|||++|||++ ++.+.||++++|++ |+++..|+..+.
T Consensus 439 ~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 492 (506)
T PRK13549 439 GAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHNL 492 (506)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEeccccC
Confidence 9999999999999888999999999997 57788999999985 789998877654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=635.27 Aligned_cols=503 Identities=22% Similarity=0.249 Sum_probs=361.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC----------CCC------c-cce
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD----------EFV------P-ERT 227 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~------~-~~~ 227 (1106)
.++|+||||++++|++++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... . .+.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 999999986431 111 1 246
Q ss_pred EEEEcCCC--CCCCCCCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHH
Q 001291 228 AAYISQHD--NHIGEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1106)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1106)
++||+|++ .+++.+||+||+.++.+.. +.. . .+....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------R------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHH
Confidence 99999987 5788899999999986532 110 0 011234677899
Q ss_pred HcCCcc---cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001291 305 VLGLDI---CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381 (1106)
Q Consensus 305 ~lgL~~---~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i 381 (1106)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++|+.+
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 45666655 99999999999999999999999999999999999999999999986533 4567778
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHH
Q 001291 382 LQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEF 461 (1106)
Q Consensus 382 ~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1106)
+|+..++.++||+|++|++|++++.|+++++.. .|.+....+++.
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~--------------------------- 270 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLA--------------------------- 270 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhh---------------------------
Confidence 999999999999999999999999998876531 000000000000
Q ss_pred HHHHhhchhhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Q 001291 462 VAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLF 541 (1106)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f 541 (1106)
. .|
T Consensus 271 --~---------------~~------------------------------------------------------------ 273 (623)
T PRK10261 271 --A---------------VP------------------------------------------------------------ 273 (623)
T ss_pred --c---------------cC------------------------------------------------------------
Confidence 0 00
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHh
Q 001291 542 FRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVF 621 (1106)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1106)
.... .
T Consensus 274 ---~~~~--~---------------------------------------------------------------------- 278 (623)
T PRK10261 274 ---QLGA--M---------------------------------------------------------------------- 278 (623)
T ss_pred ---cccc--c----------------------------------------------------------------------
Confidence 0000 0
Q ss_pred hhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhh
Q 001291 622 LSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWS 701 (1106)
Q Consensus 622 i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 701 (1106)
T Consensus 279 -------------------------------------------------------------------------------- 278 (623)
T PRK10261 279 -------------------------------------------------------------------------------- 278 (623)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHHHHhhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc
Q 001291 702 SPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPR 781 (1106)
Q Consensus 702 sP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~ 781 (1106)
.+.......+. . .
T Consensus 279 ---------------~~~~~~~~~~~----~----------------------------------------------~-- 291 (623)
T PRK10261 279 ---------------KGLDYPRRFPL----I----------------------------------------------S-- 291 (623)
T ss_pred ---------------ccccCCccccc----c----------------------------------------------c--
Confidence 00000000000 0 0
Q ss_pred cccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhh
Q 001291 782 AVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKL 861 (1106)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~ 861 (1106)
. .... . . ... . . ......+ .+ .+.++|+++.++..... .
T Consensus 292 --------~-~~~~-~-~------------~~~-----~---~---~~~~~~~-----~~-~L~~~~l~~~y~~~~~~-~ 330 (623)
T PRK10261 292 --------L-EHPA-K-Q------------EPP-----I---E---QDTVVDG-----EP-ILQVRNLVTRFPLRSGL-L 330 (623)
T ss_pred --------c-cccc-c-c------------Ccc-----c---c---cccccCC-----Cc-eEEEeeeEEEEcCCCcc-c
Confidence 0 0000 0 0 000 0 0 0000000 11 37788888776421000 0
Q ss_pred cccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh------hcccceEEEEc
Q 001291 862 QGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETFARISGYCE 935 (1106)
Q Consensus 862 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~g~v~ 935 (1106)
.. ..+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++.. ..+++.++|++
T Consensus 331 ~~-~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~ 407 (623)
T PRK10261 331 NR-VTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIF 407 (623)
T ss_pred cc-cCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEe
Confidence 00 00124699999999999999999999999999999999998653 47999999986532 12345799999
Q ss_pred cCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001291 936 QND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1106)
Q Consensus 936 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~ 1012 (1106)
|++ .+.+.+||.|++.+....+. ....+..++.+.++++.++|. +..+..+ .+|||||||||+|||||+.
T Consensus 408 Q~~~~~l~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~~LSgGqrQRv~iAraL~~ 480 (623)
T PRK10261 408 QDPYASLDPRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRYP-----HEFSGGQRQRICIARALAL 480 (623)
T ss_pred cCchhhcCCCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHHHHHHHHHHHHhc
Confidence 997 47788999999987643321 112334456788999999996 4556553 4699999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCc----h-h
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH----S-C 1086 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~----~-~ 1086 (1106)
+|+||||||||+|||+.++..|+++|++++++ |.|||++|||++ .+...||++++|++ |++++.|+..+. . .
T Consensus 481 ~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~~i~~~p~~~ 558 (623)
T PRK10261 481 NPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRRAVFENPQHP 558 (623)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHHHhcCCCCH
Confidence 99999999999999999999999999999765 899999999997 47788999999985 799999875531 1 1
Q ss_pred HHHHHHHhCCC
Q 001291 1087 HLISYFEVCPD 1097 (1106)
Q Consensus 1087 ~~~~yf~~~~g 1097 (1106)
....+++++|+
T Consensus 559 ~~~~l~~~~~~ 569 (623)
T PRK10261 559 YTRKLMAAVPV 569 (623)
T ss_pred HHHHHHhhCCC
Confidence 23456777775
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-66 Score=621.59 Aligned_cols=451 Identities=21% Similarity=0.327 Sum_probs=346.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999998 9999999988753221 3569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+...... +. ... ..+....++++++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~---~~---~~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNR---FG---RID------------------------WKKMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccc---cC---ccC------------------------HHHHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999986432100 00 000 001123467789999999888888876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.. . +++|+.++|+.+++..+||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998754 3 45677788999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC
Q 001291 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1106)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1106)
|+++..|+.+++.. ++..+.
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 236 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEM---------------- 236 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHH----------------
Confidence 99998775432200 000000
Q ss_pred CccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHH
Q 001291 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1106)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1106)
++ .
T Consensus 237 ------------------------------------------------------------~~--~--------------- 239 (501)
T PRK10762 237 ------------------------------------------------------------MV--G--------------- 239 (501)
T ss_pred ------------------------------------------------------------hc--C---------------
Confidence 00 0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHH
Q 001291 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1106)
Q Consensus 561 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1106)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCC
Q 001291 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1106)
Q Consensus 641 l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~ 720 (1106)
..
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK10762 240 ------------------------------------------------------------------------------RK 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 001291 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1106)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1106)
... .. + .
T Consensus 242 ~~~----------------------------------------------------~~--~------------------~- 248 (501)
T PRK10762 242 LED----------------------------------------------------QY--P------------------R- 248 (501)
T ss_pred ccc----------------------------------------------------cc--c------------------c-
Confidence 000 00 0 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeee
Q 001291 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1106)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~ 880 (1106)
. .. +. .+..+.++|++. .+|+|+||+|+
T Consensus 249 -------------------~---~~----~~--------~~~~l~~~~l~~------------------~~l~~vsl~i~ 276 (501)
T PRK10762 249 -------------------L---DK----AP--------GEVRLKVDNLSG------------------PGVNDVSFTLR 276 (501)
T ss_pred -------------------c---cc----CC--------CCcEEEEeCccc------------------CCcccceEEEc
Confidence 0 00 00 001245555541 26999999999
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHh
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLFYS 953 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~---~~~~~~tv~e~l~~~ 953 (1106)
+||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++ .+++.+|+.||+.+.
T Consensus 277 ~Ge~~~liG~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 354 (501)
T PRK10762 277 KGEILGVSGLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLT 354 (501)
T ss_pred CCcEEEEecCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhh
Confidence 9999999999999999999999998653 47999999976532 12345699999996 466789999999875
Q ss_pred hhhcCC---CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 954 AWLRLP---PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 954 ~~~~~~---~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
...... .....+..++.++++++.+++. +..++.+ .+|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 355 ALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred hhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 321110 0012223345688999999995 5666654 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCc
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH 1084 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~ 1084 (1106)
++..+++.|++++++|+|||++|||++ .+.+.||++++|++ |++++.|+....
T Consensus 430 ~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~~ 482 (501)
T PRK10762 430 AKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQA 482 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEeccccC
Confidence 999999999999878999999999997 57889999999985 789999987754
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-66 Score=683.32 Aligned_cols=213 Identities=24% Similarity=0.282 Sum_probs=178.4
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+++|+. +..++|+||||+|+|||++||+|+||||||||+++|.|...+ .+|.|.|||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p--~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV--CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEE
Confidence 36999999998852 223599999999999999999999999999999999998763 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
++. ..+++.+|||||++.++. -|++|||... .+..++.++++++.+++.+.. |..++..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~-gTIreNIdp~----------~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFD-GTVRQNVDPF----------LEASSAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCcccc-ccHHHHhCcc----------cCCCHHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 754 456788999999998876 5999999431 112245688999999987653 3334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 992 GVNGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
| .+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|+
T Consensus 1443 G-~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 G-SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred c-CcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 3 46999999999999999996 89999999999999999999999999875 4799999999986 467899999998
Q ss_pred cCCEEEEEecCCC
Q 001291 1071 RGGREVYVGPLGH 1083 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~ 1083 (1106)
+ |++++.|+..+
T Consensus 1519 ~-G~VvE~Gt~~e 1530 (1560)
T PTZ00243 1519 H-GAVAEMGSPRE 1530 (1560)
T ss_pred C-CEEEEECCHHH
Confidence 5 79999998643
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=680.08 Aligned_cols=211 Identities=19% Similarity=0.248 Sum_probs=177.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+++|+. +..++|+||||+|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 36999999998853 12469999999999999999999999999999999999764 37999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+.. ..+++.++||||++.+++ -|++|||... .+..++.++++++.+++.+.. |..++.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~-GTIR~NLdp~----------~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFS-GTFRKNLDPY----------EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCc-cCHHHHhCcc----------cCCCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 754 456788999999999886 5999999421 112345688999999987543 333443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+..+||||||||++|||||+++|+||+||||||+||+++.+.|++.|++.. +++|||+|+|+++ ....||+|++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 334699999999999999999999999999999999999999999999875 4799999999986 4567999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|++.
T Consensus 1427 -G~ivE~g~p~ 1436 (1490)
T TIGR01271 1427 -SSVKQYDSIQ 1436 (1490)
T ss_pred -CEEEEeCCHH
Confidence 7999999864
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=622.40 Aligned_cols=458 Identities=22% Similarity=0.307 Sum_probs=347.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35999999999999999999999999999999999999997 9999999998765432 2469999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++..... ..+.. ... ...+....++.+++.+||.+..|+.+++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~-~~~------------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV-NII------------------------DWREMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhcccccc--ccccc-ccc------------------------CHHHHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999987532100 00000 000 0011223467789999999888888876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999864 3 45667788999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC
Q 001291 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1106)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1106)
|++++.|+++++.. .+..+.
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~---------------- 240 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRL---------------- 240 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHH----------------
Confidence 99999887654310 000000
Q ss_pred CccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHH
Q 001291 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1106)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1106)
++ . .. .
T Consensus 241 ------------------------------------------------------------~~--~--~~-~--------- 246 (510)
T PRK09700 241 ------------------------------------------------------------MV--G--RE-L--------- 246 (510)
T ss_pred ------------------------------------------------------------hc--C--CC-c---------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHH
Q 001291 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1106)
Q Consensus 561 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1106)
.
T Consensus 247 ---------------------------------------------------------------------~---------- 247 (510)
T PRK09700 247 ---------------------------------------------------------------------Q---------- 247 (510)
T ss_pred ---------------------------------------------------------------------c----------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCC
Q 001291 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1106)
Q Consensus 641 l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~ 720 (1106)
..+
T Consensus 248 -------------------------------------------------------------------------~~~---- 250 (510)
T PRK09700 248 -------------------------------------------------------------------------NRF---- 250 (510)
T ss_pred -------------------------------------------------------------------------ccc----
Confidence 000
Q ss_pred cccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 001291 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1106)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1106)
.. . . .
T Consensus 251 -~~------------------~----------------------------------~---------------------~- 255 (510)
T PRK09700 251 -NA------------------M----------------------------------K---------------------E- 255 (510)
T ss_pred -cc------------------c----------------------------------c---------------------c-
Confidence 00 0 0 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeee
Q 001291 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1106)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~ 880 (1106)
.. . . .. .+..+.++|+++.+ + .+|+|+||+|+
T Consensus 256 -----------~~------~---~-----~~--------~~~~l~~~~l~~~~-------------~--~~l~~isl~i~ 287 (510)
T PRK09700 256 -----------NV------S---N-----LA--------HETVFEVRNVTSRD-------------R--KKVRDISFSVC 287 (510)
T ss_pred -----------cc------c---c-----CC--------CCcEEEEeCccccC-------------C--CcccceeEEEc
Confidence 00 0 0 00 00125666665421 1 27999999999
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHHHHh
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLFYS 953 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~---~~~~~~tv~e~l~~~ 953 (1106)
+|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++ .+++.+||.||+.+.
T Consensus 288 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~ 365 (510)
T PRK09700 288 RGEILGFAGLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAIS 365 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccc
Confidence 9999999999999999999999998653 47999999976532 12345689999983 467789999999875
Q ss_pred hhhc---CCC--C-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 954 AWLR---LPP--E-VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 954 ~~~~---~~~--~-~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
...+ ... . ...+..+..++++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+||
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~L 440 (510)
T PRK09700 366 RSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440 (510)
T ss_pred cccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 3211 000 0 11222334578999999996 6666654 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|+.++..++++|++++++|.|||++|||++ .+.+.||++++|++ |++++.++.
T Consensus 441 D~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 441 DVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 999999999999999878999999999987 57789999999985 688888865
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-65 Score=619.78 Aligned_cols=464 Identities=22% Similarity=0.291 Sum_probs=346.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCccCCCCCc-------cceEEEEcCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEFVP-------ERTAAYISQHD 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1106)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998610 128999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc--
Q 001291 236 N--HIGEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-- 310 (1106)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1106)
. +++.+||+|++.+..... +. . ..+....++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGM----------R------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCC----------C------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 4 567789999988754321 10 0 0011234678899999975
Q ss_pred -cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHH
Q 001291 311 -CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1106)
Q Consensus 311 -~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 389 (1106)
..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+.+|++++|+..++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE-LNMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh-cCCeEEEEcCcHHHHH
Confidence 35777765 9999999999999999999999999999999999999999999997653 3456667889999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhch
Q 001291 390 NLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFH 469 (1106)
Q Consensus 390 ~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1106)
.+||+|++|++|++++.|+++++... |.. +
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~-------------------------~----------------- 251 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH-------------------------P----------------- 251 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC-------------------------H-----------------
Confidence 99999999999999999887655210 000 0
Q ss_pred hhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCC
Q 001291 470 VGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKD 549 (1106)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~ 549 (1106)
+ . +.+ +...
T Consensus 252 ---------------------------~-------~-----~~~----------------------------~~~~---- 260 (529)
T PRK15134 252 ---------------------------Y-------T-----QKL----------------------------LNSE---- 260 (529)
T ss_pred ---------------------------H-------H-----HHH----------------------------HHhC----
Confidence 0 0 000 0000
Q ss_pred cccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccc
Q 001291 550 SVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGY 629 (1106)
Q Consensus 550 ~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 629 (1106)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHH
Q 001291 630 DPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQN 709 (1106)
Q Consensus 630 ~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~ 709 (1106)
|
T Consensus 261 -------------------------------------------------------------------------~------ 261 (529)
T PRK15134 261 -------------------------------------------------------------------------P------ 261 (529)
T ss_pred -------------------------------------------------------------------------c------
Confidence 0
Q ss_pred HHHHHhhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccc
Q 001291 710 GILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFE 789 (1106)
Q Consensus 710 al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~ 789 (1106)
.. .+
T Consensus 262 -----------------~~----------------------------------------------~~------------- 265 (529)
T PRK15134 262 -----------------SG----------------------------------------------DP------------- 265 (529)
T ss_pred -----------------cc----------------------------------------------cc-------------
Confidence 00 00
Q ss_pred cccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccch-hhhcccCCCc
Q 001291 790 SDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQ-MKLQGVPEDK 868 (1106)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~-~~~~~~~~~~ 868 (1106)
. . . . .. + .+ .+.++|+++.++.+.+ .+ -..+.
T Consensus 266 ---------~------------~-------~----~----~~--~-----~~-~l~~~~l~~~~~~~~~~~~---~~~~~ 298 (529)
T PRK15134 266 ---------V------------P-------L----P----EP--A-----SP-LLDVEQLQVAFPIRKGILK---RTVDH 298 (529)
T ss_pred ---------c------------c-------c----C----CC--C-----CC-cccccCcEEEeecCccccc---ccccc
Confidence 0 0 0 0 00 0 00 2455666655531100 00 00012
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh------cccceEEEEccCC--CC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------TFARISGYCEQND--IH 940 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~g~v~q~~--~~ 940 (1106)
+.+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... .+++.+||++|++ .+
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l 375 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL 375 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc
Confidence 469999999999999999999999999999999999763 379999999765321 1245689999997 36
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 941 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
++.+||.||+.++...+.. .......++.+.++++.+++. +..+..+ .+|||||||||+|||||+.+|++|||
T Consensus 376 ~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 376 NPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----AEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----ccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 6779999999886433211 122333455688999999997 4556553 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
||||+|||+.++..+++.|++++++ |+|||++|||++ .+.+.||++++|++ |++++.|+..
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 511 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDCE 511 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999865 899999999997 47788999999985 6899888753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-65 Score=614.72 Aligned_cols=454 Identities=20% Similarity=0.272 Sum_probs=344.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+.+|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 35999999999999999999999999999999999999998 9999999988754332 2469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+.... . +....++.+++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~~--------------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR--------------Q------------------------ASMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc--------------h------------------------HHHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998853100 0 0112356789999999888888876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3 45677788999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC
Q 001291 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1106)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1106)
|++++.|+++++... +..+.+
T Consensus 216 G~i~~~g~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (510)
T PRK15439 216 GTIALSGKTADLSTD--------------------------------------------DIIQAI--------------- 236 (510)
T ss_pred CEEEEecChHHcCHH--------------------------------------------HHHHHH---------------
Confidence 999999887654210 000000
Q ss_pred CccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHH
Q 001291 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1106)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1106)
........ ..
T Consensus 237 -------------------------------------------------------------~~~~~~~~-~~-------- 246 (510)
T PRK15439 237 -------------------------------------------------------------TPAAREKS-LS-------- 246 (510)
T ss_pred -------------------------------------------------------------hCcccccc-cc--------
Confidence 00000000 00
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHH
Q 001291 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1106)
Q Consensus 561 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1106)
T Consensus 247 -------------------------------------------------------------------------------- 246 (510)
T PRK15439 247 -------------------------------------------------------------------------------- 246 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCC
Q 001291 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1106)
Q Consensus 641 l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~ 720 (1106)
. .. .
T Consensus 247 -----------------------------------------------~--~~---------------------------~ 250 (510)
T PRK15439 247 -----------------------------------------------A--SQ---------------------------K 250 (510)
T ss_pred -----------------------------------------------c--cc---------------------------c
Confidence 0 00 0
Q ss_pred cccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 001291 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1106)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1106)
.. .. +.
T Consensus 251 ~~-----------------~~-----------------------------------~~---------------------- 256 (510)
T PRK15439 251 LW-----------------LE-----------------------------------LP---------------------- 256 (510)
T ss_pred cc-----------------cc-----------------------------------cc----------------------
Confidence 00 00 00
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeee
Q 001291 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1106)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~ 880 (1106)
.. . . .. + .+ +..+.++|++. .+|+||||+|+
T Consensus 257 -----------~~------~----~-~~-~--~~------~~~l~~~~l~~------------------~~l~~isl~i~ 287 (510)
T PRK15439 257 -----------GN------R----R-QQ-A--AG------APVLTVEDLTG------------------EGFRNISLEVR 287 (510)
T ss_pred -----------cc------c----c-cc-C--CC------CceEEEeCCCC------------------CCccceeEEEc
Confidence 00 0 0 00 0 00 01255566541 15899999999
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh----cccceEEEEccCC---CCCCCCCHHHHHHHh
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLFYS 953 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~g~v~q~~---~~~~~~tv~e~l~~~ 953 (1106)
+|+++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|++ .+++.+|+.|++...
T Consensus 288 ~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~ 365 (510)
T PRK15439 288 AGEILGLAGVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCAL 365 (510)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhh
Confidence 9999999999999999999999997653 479999999765321 1234689999984 366778999998542
Q ss_pred hhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 954 AWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 954 ~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
...+..........++.++++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.+++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 366 THNRRGFWIKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred hhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 1111110011122345678999999996 5666654 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1033 ~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
.+++.|++++++|.|||++|||++ ++.+.||++++|++ |++++.|....
T Consensus 441 ~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~~ 489 (510)
T PRK15439 441 DIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcccc
Confidence 999999999888999999999997 57788999999984 79999987765
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-65 Score=616.69 Aligned_cols=445 Identities=23% Similarity=0.319 Sum_probs=342.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECC-----------------------ccC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNG-----------------------HNM 219 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~ 219 (1106)
+++|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 577 89999973 211
Q ss_pred C-------CC------CccceEEEEcCC-CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHH
Q 001291 220 D-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285 (1106)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~ 285 (1106)
. .. ..++.++||+|+ +.+++.+||+||+.|+....+.. .
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~----------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------G----------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------H-----------------
Confidence 0 00 013569999997 67888899999999875432210 0
Q ss_pred HhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH
Q 001291 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1106)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~ 365 (1106)
.+....++.+++.+||++..+..+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 01123467789999999888877765 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhh
Q 001291 366 FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQY 445 (1106)
Q Consensus 366 l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~ 445 (1106)
|+++++.. +++|++++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~---------------------------- 261 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM---------------------------- 261 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH----------------------------
Confidence 99986533 4567778899999999999999999999998876554311000
Q ss_pred hhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHH
Q 001291 446 WAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIF 525 (1106)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~ 525 (1106)
T Consensus 262 -------------------------------------------------------------------------------- 261 (520)
T TIGR03269 262 -------------------------------------------------------------------------------- 261 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHccccCCCCcccchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHH
Q 001291 526 KLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSW 605 (1106)
Q Consensus 526 ~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~ 605 (1106)
. ...
T Consensus 262 ----------------~--~~~---------------------------------------------------------- 265 (520)
T TIGR03269 262 ----------------E--GVS---------------------------------------------------------- 265 (520)
T ss_pred ----------------h--hch----------------------------------------------------------
Confidence 0 000
Q ss_pred HHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcc
Q 001291 606 ILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFV 685 (1106)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~ 685 (1106)
T Consensus 266 -------------------------------------------------------------------------------- 265 (520)
T TIGR03269 266 -------------------------------------------------------------------------------- 265 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHH
Q 001291 686 LSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNV 765 (1106)
Q Consensus 686 i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i 765 (1106)
+ .
T Consensus 266 -----------------~------------~------------------------------------------------- 267 (520)
T TIGR03269 266 -----------------E------------V------------------------------------------------- 267 (520)
T ss_pred -----------------h------------h-------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHhccccCCCccccccccccccccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceee
Q 001291 766 GFALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLT 845 (1106)
Q Consensus 766 ~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 845 (1106)
.+. . . . . . + ...+.
T Consensus 268 ------------~~~------------------~-------------~------~---~------~--~------~~~l~ 281 (520)
T TIGR03269 268 ------------EKE------------------C-------------E------V---E------V--G------EPIIK 281 (520)
T ss_pred ------------ccc------------------c-------------c------c---C------C--C------CceEE
Confidence 000 0 0 0 0 0 0 00256
Q ss_pred ecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEc-Ccc---
Q 001291 846 FDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS-GYP--- 921 (1106)
Q Consensus 846 f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~--- 921 (1106)
++|+++.++.. ..+++.+|+|+||+|++|+++||+||||||||||+++|+|..++ .+|+|.++ |.+
T Consensus 282 ~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~ 351 (520)
T TIGR03269 282 VRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVD 351 (520)
T ss_pred EeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCcccc
Confidence 67777665310 01224699999999999999999999999999999999998653 47999996 532
Q ss_pred CCh------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-----ccccccCC
Q 001291 922 KKQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-----LRQSLVGL 990 (1106)
Q Consensus 922 ~~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-----~~~~~~~~ 990 (1106)
... ...++.+||++|++.+++.+||.||+.+...+. ...+..+..+.++++.+++.+ ..++.
T Consensus 352 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~--- 424 (520)
T TIGR03269 352 MTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY--- 424 (520)
T ss_pred ccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC---
Confidence 111 112456899999988888899999998753221 122333456788999999975 34444
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEE
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++ |.|||++|||++ .+.+.||++++|
T Consensus 425 --~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l 501 (520)
T TIGR03269 425 --PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALM 501 (520)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEE
Confidence 3469999999999999999999999999999999999999999999999764 899999999997 477889999999
Q ss_pred ecCCEEEEEecC
Q 001291 1070 KRGGREVYVGPL 1081 (1106)
Q Consensus 1070 ~~gG~~~~~G~~ 1081 (1106)
++ |++++.|+.
T Consensus 502 ~~-G~i~~~g~~ 512 (520)
T TIGR03269 502 RD-GKIVKIGDP 512 (520)
T ss_pred EC-CEEEEECCH
Confidence 85 788888764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-64 Score=610.61 Aligned_cols=453 Identities=22% Similarity=0.316 Sum_probs=344.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999997 9999999988753221 3579999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++......+. .. ..+....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VN------------------------RRLLNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-------CC------------------------HHHHHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999998632110000 00 001123466789999998877777765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++..+||+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3 45677788999999999999999999
Q ss_pred CeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhcC
Q 001291 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQT 480 (1106)
Q Consensus 401 G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1106)
|+++..++.... .+.++.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~------------------- 233 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQL------------------- 233 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHH-------------------
Confidence 999854421000 000000
Q ss_pred CccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHHH
Q 001291 481 PFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAGA 560 (1106)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g~ 560 (1106)
. . .+. .
T Consensus 234 ------------------------~-----~----------------------------~~~--~--------------- 239 (501)
T PRK11288 234 ------------------------V-----Q----------------------------AMV--G--------------- 239 (501)
T ss_pred ------------------------H-----H----------------------------Hhc--C---------------
Confidence 0 0 000 0
Q ss_pred HHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHHH
Q 001291 561 LFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQY 640 (1106)
Q Consensus 561 lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~~ 640 (1106)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK11288 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCCC
Q 001291 641 LLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGHS 720 (1106)
Q Consensus 641 l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~~ 720 (1106)
..
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK11288 240 ------------------------------------------------------------------------------RE 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccCc
Q 001291 721 WKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGGT 800 (1106)
Q Consensus 721 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1106)
.. .. . .
T Consensus 242 ~~------------------~~----------------------------------~---------------------~- 247 (501)
T PRK11288 242 IG------------------DI----------------------------------Y---------------------G- 247 (501)
T ss_pred cc------------------cc----------------------------------c---------------------c-
Confidence 00 00 0 0
Q ss_pred ccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeee
Q 001291 801 VQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFR 880 (1106)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~ 880 (1106)
.. . . . . .+..+.++|+++ ..+++|+||+|+
T Consensus 248 ------------~~-----~----~----~--~------~~~~l~~~~~~~-----------------~~~l~~isl~i~ 277 (501)
T PRK11288 248 ------------YR-----P----R----P--L------GEVRLRLDGLKG-----------------PGLREPISFSVR 277 (501)
T ss_pred ------------cc-----c----c----C--C------CCcEEEEecccc-----------------CCcccceeEEEe
Confidence 00 0 0 0 0 001345556542 138999999999
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCCC---CCCCCCHHHHHHHh
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDI---HSPFVTVYESLFYS 953 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~~---~~~~~tv~e~l~~~ 953 (1106)
+||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. +++.+|+.||+.++
T Consensus 278 ~Ge~~~iiG~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~ 355 (501)
T PRK11288 278 AGEIVGLFGLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINIS 355 (501)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccc
Confidence 999999999999999999999999865 358999999976532 122456899999863 67889999999775
Q ss_pred hhhcCCC-C--CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 954 AWLRLPP-E--VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 954 ~~~~~~~-~--~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
....... . ......++.++++++.+++. +..++.+ ..|||||||||+|||||+.+|+||||||||+|||+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 356 ARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred cchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 3221100 0 01222335678999999994 5666654 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCch
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHS 1085 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~ 1085 (1106)
++..++++|++++++|.|||++|||++ ++.+.||++++|++ |++++.|..++..
T Consensus 431 ~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~~ 484 (501)
T PRK11288 431 AKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQAT 484 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 999999999999888999999999997 57889999999985 7899999887543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-64 Score=609.59 Aligned_cols=458 Identities=19% Similarity=0.273 Sum_probs=344.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++| + +|+|.++|+++..... ++.++||+|++.++
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLV 90 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCCCCHHHHHhCCEEEEeeccccC
Confidence 4699999999999999999999999999999999999886 5 8999999998764332 34699999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc-ccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA-DTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg 317 (1106)
+.+||+||+.++......+.. . ...+....++.+++.+||.+.. ++.++
T Consensus 91 ~~~tv~~~l~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (500)
T TIGR02633 91 PELSVAENIFLGNEITLPGGR------M------------------------AYNAMYLRAKNLLRELQLDADNVTRPVG 140 (500)
T ss_pred CCCcHHHHHHhhccccccccc------c------------------------CHHHHHHHHHHHHHHcCCCCCcccCchh
Confidence 999999999986432100000 0 0001123467789999998764 45566
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++
T Consensus 141 ~-----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~ 213 (500)
T TIGR02633 141 D-----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICV 213 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEE
Confidence 5 999999999999999999999999999999999999999999998754 3 55677788999999999999999
Q ss_pred ecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhh
Q 001291 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDE 477 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1106)
|++|++++.|+.+++.. ..
T Consensus 214 l~~G~i~~~~~~~~~~~--------------------------------------------~~----------------- 232 (500)
T TIGR02633 214 IRDGQHVATKDMSTMSE--------------------------------------------DD----------------- 232 (500)
T ss_pred EeCCeEeeecCcccCCH--------------------------------------------HH-----------------
Confidence 99999987654321100 00
Q ss_pred hcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhH
Q 001291 478 LQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIY 557 (1106)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~ 557 (1106)
.. . .+. + .
T Consensus 233 -----------------------------------~~-----------------------~-~~~--~--~--------- 240 (500)
T TIGR02633 233 -----------------------------------II-----------------------T-MMV--G--R--------- 240 (500)
T ss_pred -----------------------------------HH-----------------------H-HHh--C--c---------
Confidence 00 0 000 0 0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHH
Q 001291 558 AGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFF 637 (1106)
Q Consensus 558 ~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~ 637 (1106)
+
T Consensus 241 --------------------------~----------------------------------------------------- 241 (500)
T TIGR02633 241 --------------------------E----------------------------------------------------- 241 (500)
T ss_pred --------------------------c-----------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhc
Q 001291 638 KQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFL 717 (1106)
Q Consensus 638 ~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~ 717 (1106)
.
T Consensus 242 -----------------------------------------------------~-------------------------- 242 (500)
T TIGR02633 242 -----------------------------------------------------I-------------------------- 242 (500)
T ss_pred -----------------------------------------------------c--------------------------
Confidence 0
Q ss_pred CCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccc
Q 001291 718 GHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRI 797 (1106)
Q Consensus 718 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1106)
.. ...
T Consensus 243 ----~~----------------------------------------------------~~~------------------- 247 (500)
T TIGR02633 243 ----TS----------------------------------------------------LYP------------------- 247 (500)
T ss_pred ----cc----------------------------------------------------ccc-------------------
Confidence 00 000
Q ss_pred cCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeee
Q 001291 798 GGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSG 877 (1106)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~ 877 (1106)
. . . . +. . ...+.++|+++.++. .++..+|+|+||
T Consensus 248 -~------------~-------~----~----~~-~-------~~~l~~~~l~~~~~~----------~~~~~~l~~is~ 281 (500)
T TIGR02633 248 -H------------E-------P----H----EI-G-------DVILEARNLTCWDVI----------NPHRKRVDDVSF 281 (500)
T ss_pred -c------------c-------c----c----CC-C-------CceEEEeCCcccccc----------ccccccccccee
Confidence 0 0 0 0 00 0 002556666544310 012358999999
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCC---CCCCCCCHHHHH
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESL 950 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~---~~~~~~tv~e~l 950 (1106)
+|++||++||+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|++ .+++.+|++||+
T Consensus 282 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~ 360 (500)
T TIGR02633 282 SLRRGEILGVAGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360 (500)
T ss_pred EEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHh
Confidence 9999999999999999999999999998652 147999999976532 12345689999996 467889999999
Q ss_pred HHhhhhcCC--CCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 951 FYSAWLRLP--PEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 951 ~~~~~~~~~--~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
.++..-... ........+..++++++.+++.+ ..+..+ ..||||||||++|||||+.+|++|||||||+|||
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 361 TLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 875321110 01122334456889999999964 456553 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1028 ~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
+.++..+++.|++++++|.|||++|||++ ++.+.||++++|++ |+++..++..
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99999999999999888999999999997 57789999999985 7888877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-63 Score=600.38 Aligned_cols=453 Identities=18% Similarity=0.275 Sum_probs=343.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999998 9999999998754321 3569999999888899
Q ss_pred CCHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 241 MTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
+||+||+.++.. ..+.. .. ..+....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--------VD------------------------QDKMYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccc--------cC------------------------HHHHHHHHHHHHHHcCCCCCccCchhh-
Confidence 999999988532 11100 00 001123467789999999888887765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++++. . +.+|+.++|+..++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 4566778899999999999999999
Q ss_pred CCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhc
Q 001291 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1106)
+|+++..|+++++.. ++..+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~---------------- 228 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIA---------------- 228 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHH----------------
Confidence 999998776543200 00000
Q ss_pred CCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHH
Q 001291 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAG 559 (1106)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g 559 (1106)
.++ + ..
T Consensus 229 ------------------------------------------------------------~~~--~--~~---------- 234 (491)
T PRK10982 229 ------------------------------------------------------------MMV--G--RS---------- 234 (491)
T ss_pred ------------------------------------------------------------HHh--C--CC----------
Confidence 000 0 00
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHH
Q 001291 560 ALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQ 639 (1106)
Q Consensus 560 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~ 639 (1106)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001291 640 YLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719 (1106)
Q Consensus 640 ~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~ 719 (1106)
+
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred CcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccC
Q 001291 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGG 799 (1106)
Q Consensus 720 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1106)
. ..+ .
T Consensus 236 --~----------------------------------------------------~~~---------------------~ 240 (491)
T PRK10982 236 --T----------------------------------------------------QRF---------------------P 240 (491)
T ss_pred --c----------------------------------------------------ccc---------------------c
Confidence 0 000 0
Q ss_pred cccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeee
Q 001291 800 TVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF 879 (1106)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i 879 (1106)
.. . . .. .+..+.++|+++.. +.+|+||||+|
T Consensus 241 ------------~~------~----~----~~--------~~~~i~~~~l~~~~---------------~~~l~~vsl~i 271 (491)
T PRK10982 241 ------------DK------E----N----KP--------GEVILEVRNLTSLR---------------QPSIRDVSFDL 271 (491)
T ss_pred ------------cc------c----C----CC--------CCcEEEEeCccccc---------------CcccceeeEEE
Confidence 00 0 0 00 00135667766531 24899999999
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh----cccceEEEEccCCC---CCCCCCHHHHHHH
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDI---HSPFVTVYESLFY 952 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~g~v~q~~~---~~~~~tv~e~l~~ 952 (1106)
++||++||+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|++. +++.+|+.+|..+
T Consensus 272 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 272 HKGEILGIAGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred eCCcEEEEecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 99999999999999999999999998763 589999999765321 12445899999853 5677888777433
Q ss_pred hhh--hcCCCC-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 953 SAW--LRLPPE-VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 953 ~~~--~~~~~~-~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
... ...... ......+..+.++++.+++. +..+..+ .+|||||||||+|||||+.+|+||||||||+|||+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~ 424 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccCh
Confidence 211 000001 11223345678899999985 4455553 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCch
Q 001291 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHS 1085 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~ 1085 (1106)
.++..++++|+++.++|+|||++|||++ ++.+.||++++|++ |+++..++.+...
T Consensus 425 ~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~~~~ 479 (491)
T PRK10982 425 GAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTKTTT 479 (491)
T ss_pred hHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccccCC
Confidence 9999999999999888999999999997 57789999999985 7888887765443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-62 Score=587.13 Aligned_cols=446 Identities=19% Similarity=0.255 Sum_probs=329.4
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCC--C--
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNH--I-- 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 238 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 5999999999999999999999999999999999999998 9999999977643221 2458999997532 1
Q ss_pred ----CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 239 ----GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 239 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
..+||+|++.+.. +....++.+++.+||++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1457777664310 001235678999999988888
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++ . +.+|+.++|+..++.++||+
T Consensus 132 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCCE
Confidence 8876 999999999999999999999999999999999999999999998764 3 45566688899999999999
Q ss_pred EEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhh
Q 001291 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKL 474 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1106)
|++|++|+++++|+++++... +.+..
T Consensus 205 v~~l~~G~i~~~~~~~~~~~~---------------~~~~~--------------------------------------- 230 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQQ---------------ALVAQ--------------------------------------- 230 (490)
T ss_pred EEEEECCEEEEeCCHHHHhcc---------------hhhhh---------------------------------------
Confidence 999999999998886654210 00000
Q ss_pred hhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccch
Q 001291 475 SDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDG 554 (1106)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~ 554 (1106)
. ... + ....
T Consensus 231 ---~------------------------------~~~------~--------------------------~~~~------ 239 (490)
T PRK10938 231 ---L------------------------------AHS------E--------------------------QLEG------ 239 (490)
T ss_pred ---h------------------------------hhh------h--------------------------ccCc------
Confidence 0 000 0 0000
Q ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchh
Q 001291 555 GIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAG 634 (1106)
Q Consensus 555 ~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 634 (1106)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHH
Q 001291 635 RFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILAN 714 (1106)
Q Consensus 635 rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~n 714 (1106)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccc
Q 001291 715 EFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQD 794 (1106)
Q Consensus 715 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~ 794 (1106)
. . .+..
T Consensus 240 ----~--~--~~~~------------------------------------------------------------------ 245 (490)
T PRK10938 240 ----V--Q--LPEP------------------------------------------------------------------ 245 (490)
T ss_pred ----c--c--cCcc------------------------------------------------------------------
Confidence 0 0 0000
Q ss_pred ccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeee
Q 001291 795 NRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNG 874 (1106)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~ 874 (1106)
. . .. . .. .... ....+.++|+++.++ ++.+|+|
T Consensus 246 --~-~------------~~------~---~~--~~~~--------~~~~l~~~~l~~~~~-------------~~~il~~ 278 (490)
T PRK10938 246 --D-E------------PS------A---RH--ALPA--------NEPRIVLNNGVVSYN-------------DRPILHN 278 (490)
T ss_pred --c-c------------cc------c---cc--ccCC--------CCceEEEeceEEEEC-------------CeeEEee
Confidence 0 0 00 0 00 0000 001367888877653 2469999
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCCCCCC--CCCHHH
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDIHSP--FVTVYE 948 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~~~~~--~~tv~e 948 (1106)
+||+|++||++||+||||||||||+++|+|..+. ..+|+|.++|.+... ...++.+||++|++...+ ..++.+
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~ 357 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRN 357 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHH
Confidence 9999999999999999999999999999996431 147999999976421 123456999999875533 246766
Q ss_pred HHHHhhhh--cCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 949 SLFYSAWL--RLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 949 ~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
++.++... ...... ....++.++++++.+++.+ ..+..+ .+|||||||||+|||||+.+|++|||||||+|
T Consensus 358 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~g 431 (490)
T PRK10938 358 VILSGFFDSIGIYQAV-SDRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQG 431 (490)
T ss_pred HHHhccccccccccCC-CHHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 66443211 000111 1223456889999999986 666653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-eEEEEecCccHHHHH-hcCeEEEEecCCEEEEE
Q 001291 1026 LDARAAAIVMRTVRNTVDTGR-TVVCTIHQPSIDIFE-AFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g~-tvi~~tH~~~~~~~~-~~D~v~~l~~gG~~~~~ 1078 (1106)
||+.++..+++.|++++++|. |||++|||++ ++.+ .||++++|++ |++++.
T Consensus 432 LD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 432 LDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 999999999999999987764 6999999987 4655 5899999986 566654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-59 Score=572.32 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=163.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 478888887653 34699999999999999999999999999999999997653 479999843 2
Q ss_pred ChhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gq 1000 (1106)
..+||++|++ .+.+.+||.|++.+...... .... ...+.++++.+++.+ ..++.+ .+|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 56778999999987642221 1111 123457899999964 445553 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G 1079 (1106)
|||++|||||+.+|++|||||||+|||+.++..+++.|+++. | |||++|||++ .+...||++++|++||+++ +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999997 4778899999998777776 444
Q ss_pred c
Q 001291 1080 P 1080 (1106)
Q Consensus 1080 ~ 1080 (1106)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-60 Score=510.40 Aligned_cols=472 Identities=25% Similarity=0.335 Sum_probs=364.2
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCCCcc-------ceEEEEcC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEFVPE-------RTAAYISQ 233 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 233 (1106)
..+.++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|++|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 446799999999999999999999999999999999999875 345689999999997544321 36999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc
Q 001291 234 HD--NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1106)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1106)
++ .+.|-.|+...|.-..+++.. + ...+.+.++-+.|+..|+.+.
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------~------------------------~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------L------------------------SRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------c------------------------cHHHHHHHHHHHHHHcCCCch
Confidence 96 466777888888777665421 1 111234456778999999876
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1106)
...+ +.+...|||||||||.||.||+.+|++|+-||||++||-....+|+++|+++... .+..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5544 3456679999999999999999999999999999999999999999999998664 466777899999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhh
Q 001291 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVG 471 (1106)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1106)
+|+|+||.+|+++++|+.+.+.. .|.+ |
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------p------------------- 252 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------P------------------- 252 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------h-------------------
Confidence 99999999999999999877632 1111 0
Q ss_pred hhhhhhhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcc
Q 001291 472 QKLSDELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSV 551 (1106)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~ 551 (1106)
|. |.++ .
T Consensus 253 -------------------------YT------------r~Ll------------------------------~------ 259 (534)
T COG4172 253 -------------------------YT------------RKLL------------------------------A------ 259 (534)
T ss_pred -------------------------HH------------HHHH------------------------------h------
Confidence 00 0000 0
Q ss_pred cchhhHHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccC
Q 001291 552 TDGGIYAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDP 631 (1106)
Q Consensus 552 ~~~~~~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 631 (1106)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHH
Q 001291 632 NAGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGI 711 (1106)
Q Consensus 632 ~~~rf~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al 711 (1106)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccc
Q 001291 712 LANEFLGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESD 791 (1106)
Q Consensus 712 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~ 791 (1106)
.|-.+.
T Consensus 260 --aeP~g~------------------------------------------------------------------------ 265 (534)
T COG4172 260 --AEPSGD------------------------------------------------------------------------ 265 (534)
T ss_pred --cCCCCC------------------------------------------------------------------------
Confidence 000000
Q ss_pred cccccccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEE
Q 001291 792 EQDNRIGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVL 871 (1106)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~ 871 (1106)
. . +.+ +-.|..+.-+|+.-.++.+..+-. -..+...+
T Consensus 266 ----------------------------~----~--p~~-------~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~A 302 (534)
T COG4172 266 ----------------------------P----P--PLP-------EDAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRA 302 (534)
T ss_pred ----------------------------C----C--CCC-------CCCCceEEecceEEEEecCCcccc--ccchheEE
Confidence 0 0 000 001123344444433333322100 01133569
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh------hcccceEEEEccCCC--CCCC
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETFARISGYCEQNDI--HSPF 943 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~g~v~q~~~--~~~~ 943 (1106)
+++||+++++||.+||||.||||||||-.+|.+...+ +|.|.++|.++.. ...++.+-.|+|+|. +.|.
T Consensus 303 Vd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPR 379 (534)
T COG4172 303 VDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPR 379 (534)
T ss_pred eccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcc
Confidence 9999999999999999999999999999999997763 5999999988753 235677899999986 5789
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPT 1023 (1106)
+||.+-+.=+.....+ ..+..++++++.++|+.+||++-...+ . +.++|||||||++||||++.+|++++|||||
T Consensus 380 mtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~R--Y--PhEFSGGQRQRIAIARAliLkP~~i~LDEPT 454 (534)
T COG4172 380 MTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNR--Y--PHEFSGGQRQRIAIARALILKPELILLDEPT 454 (534)
T ss_pred cCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhc--C--CcccCcchhhHHHHHHHHhcCCcEEEecCCc
Confidence 9999988777655543 466788899999999999998643222 2 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1024 SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1024 sgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+||..-+++|.++|+++.+ .|.+-++||||+.. +...||++++|++ |++|+.|+..
T Consensus 455 SALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~~ 512 (534)
T COG4172 455 SALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPTE 512 (534)
T ss_pred hHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCHH
Confidence 99999999999999999964 59999999999974 7778999999985 7999999865
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-60 Score=573.29 Aligned_cols=198 Identities=18% Similarity=0.257 Sum_probs=162.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 478899887763 24699999999999999999999999999999999997653 4799999873
Q ss_pred ChhcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHH
Q 001291 923 KQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~G 999 (1106)
+.+||++|++. +.+.+|+.|++.+.. .. ...+..++++++.+++. +..+..+ .+||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-----~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-----GDDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-----CccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 35899999864 445689999985421 11 11234578899999984 5556553 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~ 1078 (1106)
||||++|||||+.+|+||||||||+|||+.+...+++.|+++ +.|||++|||++ .+...||++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999997 47788999999986 5666 76
Q ss_pred ecC
Q 001291 1079 GPL 1081 (1106)
Q Consensus 1079 G~~ 1081 (1106)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 653
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-58 Score=565.18 Aligned_cols=201 Identities=19% Similarity=0.281 Sum_probs=162.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~-~- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGE-T- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECC-c-
Confidence 478888887653 34699999999999999999999999999999999998653 479999843 2
Q ss_pred ChhcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gq 1000 (1106)
..+||++|++. +++.+|+.|++.++..... .... +..+.++++.+++.+ ..+..+ .+|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 14899999863 6778999999987642211 1111 123457899999964 445553 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G 1079 (1106)
||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .|||++|||++ .+...||++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999997 4778899999998777876 444
Q ss_pred c
Q 001291 1080 P 1080 (1106)
Q Consensus 1080 ~ 1080 (1106)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-58 Score=554.78 Aligned_cols=214 Identities=20% Similarity=0.226 Sum_probs=174.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 367788876553 2 248999999999999999999999999999999998653 47999875
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
..+||++|+..+.+.+||+|++.+.... ... ...++++++.+++.+..++.+ .+|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998877889999999875211 111 124678999999987777664 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+||||||||+|||+.++..++++|++++++ |+|||++|||++ .+...||++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999987 4778899999996 3 77777775
Q ss_pred CCc---hhHHHHHHHhCCCCc
Q 001291 1082 GHH---SCHLISYFEVCPDAH 1099 (1106)
Q Consensus 1082 ~~~---~~~~~~yf~~~~g~~ 1099 (1106)
... ...+-.|++.+ ||.
T Consensus 538 ~~~~~~~~~~~~~l~~~-~i~ 557 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL-GIT 557 (590)
T ss_pred CCchhHHHHHHHHHHHc-CCE
Confidence 432 12345667766 665
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=549.33 Aligned_cols=198 Identities=21% Similarity=0.345 Sum_probs=159.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP--VSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCC--
Confidence 478888887763 34699999999999999999999999999999999997653 4799998641
Q ss_pred ChhcccceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 001291 923 KQETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~G 999 (1106)
..+||++|+. .+.+..|+.+++.. . . .......+.++++.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 23455677776531 1 1 1122345788999999963 455554 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~ 1078 (1106)
|||||+||++|+.+|++|||||||+|||+.+...+.++|+++ . .|||+||||+. .+...||++++|++ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~-gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--E-GALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 3 49999999987 47788999999985 6776 77
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|++.
T Consensus 510 g~~~ 513 (638)
T PRK10636 510 GDLE 513 (638)
T ss_pred CCHH
Confidence 7653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=544.17 Aligned_cols=202 Identities=24% Similarity=0.337 Sum_probs=161.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|..++ ..|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p--~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA--DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEE-CCCc
Confidence 478888887663 34699999999999999999999999999999999997653 4799988 4321
Q ss_pred ChhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.+||++|+. .+.+.+||.|++.+..... ... .....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 4678899999997653211 111 1123467889899885 3455553 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G 1079 (1106)
||||+||++|+.+|++|||||||+|||+.+...+.++|+++ +.|||+||||++ .+...||++++|+++|++. |.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999987 4778899999997335554 555
Q ss_pred cC
Q 001291 1080 PL 1081 (1106)
Q Consensus 1080 ~~ 1081 (1106)
++
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=508.26 Aligned_cols=450 Identities=23% Similarity=0.359 Sum_probs=348.7
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1106)
..+++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.++|.+.....++ .-|+.|.|+..++
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 3467999999999999999999999999999999999999998 99999999987655543 4589999999999
Q ss_pred CCCCHHHHHHHHHHhcC-CCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 239 GEMTVRETLAFAARCQG-VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~-~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
|+|||.|||.++..... .+- + ...+....+..+|+.+|+....++.|+
T Consensus 96 p~LsVaeNifLgre~~~~~g~-------i------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~ 144 (500)
T COG1129 96 PNLSVAENIFLGREPTRRFGL-------I------------------------DRKAMRRRARELLARLGLDIDPDTLVG 144 (500)
T ss_pred CCccHHHHhhcccccccCCCc-------c------------------------CHHHHHHHHHHHHHHcCCCCChhhhhh
Confidence 99999999988754332 110 0 011123456778999999766899998
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ ||+||||-|.||||+..+++|++||||||+|+...+..+++.++++. ..+..|+.|+|..+|++++||+|.|
T Consensus 145 ~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk--~~Gv~ii~ISHrl~Ei~~i~DritV 217 (500)
T COG1129 145 D-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK--AQGVAIIYISHRLDEVFEIADRITV 217 (500)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCcHHHHHHhcCEEEE
Confidence 7 99999999999999999999999999999999999999999999985 4577888899999999999999999
Q ss_pred ecCCeEEEEcCH-HHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhh
Q 001291 398 LSDGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSD 476 (1106)
Q Consensus 398 L~~G~iv~~G~~-~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (1106)
|.+|+++..++. .+.- .++.
T Consensus 218 lRDG~~v~~~~~~~~~~--------------------------------------------~~~l--------------- 238 (500)
T COG1129 218 LRDGRVVGTRPTAAETS--------------------------------------------EDEL--------------- 238 (500)
T ss_pred EeCCEEeeecccccCCC--------------------------------------------HHHH---------------
Confidence 999999876542 2110 0000
Q ss_pred hhcCCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhh
Q 001291 477 ELQTPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGI 556 (1106)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~ 556 (1106)
.
T Consensus 239 ----------------------------v--------------------------------------------------- 239 (500)
T COG1129 239 ----------------------------V--------------------------------------------------- 239 (500)
T ss_pred ----------------------------H---------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHH
Q 001291 557 YAGALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRF 636 (1106)
Q Consensus 557 ~~g~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf 636 (1106)
-.|+|-.
T Consensus 240 -------------------------------------------------------------------~~MvGr~------ 246 (500)
T COG1129 240 -------------------------------------------------------------------RLMVGRE------ 246 (500)
T ss_pred -------------------------------------------------------------------HHhhCcc------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhh
Q 001291 637 FKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEF 716 (1106)
Q Consensus 637 ~~~~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef 716 (1106)
+
T Consensus 247 -------------------------------------------------------------------------------~ 247 (500)
T COG1129 247 -------------------------------------------------------------------------------L 247 (500)
T ss_pred -------------------------------------------------------------------------------h
Confidence 0
Q ss_pred cCCCcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcccccccccccccccc
Q 001291 717 LGHSWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNR 796 (1106)
Q Consensus 717 ~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1106)
.. . +.
T Consensus 248 -----~~------------------~----------------------------------~~------------------ 252 (500)
T COG1129 248 -----ED------------------L----------------------------------FP------------------ 252 (500)
T ss_pred -----hh------------------h----------------------------------cc------------------
Confidence 00 0 00
Q ss_pred ccCcccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeee
Q 001291 797 IGGTVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVS 876 (1106)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs 876 (1106)
. . . .. ...+..+++++++- ...++|+|
T Consensus 253 ---------------------------~-~-~-~~------~~~~~~l~v~~l~~-----------------~~~~~dvS 279 (500)
T COG1129 253 ---------------------------E-P-P-EE------GIGEPVLEVRNLSG-----------------GGKVRDVS 279 (500)
T ss_pred ---------------------------c-c-c-cc------CCCCcEEEEecCCC-----------------CCceeCce
Confidence 0 0 0 00 00011233443321 11578999
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCCC---CCCCCCHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDI---HSPFVTVYES 949 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~~---~~~~~tv~e~ 949 (1106)
|++++||++||.|-=|||+|-|+++|.|... ...|+|.++|.+... ...+..++||+.+.. ++..++|.+|
T Consensus 280 f~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~N 357 (500)
T COG1129 280 FTVRAGEILGIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAEN 357 (500)
T ss_pred eEEeCCcEEEEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHh
Confidence 9999999999999999999999999999544 347999999997643 234557999998754 5678999999
Q ss_pred HHHhhhhcCC-C-CCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 950 LFYSAWLRLP-P-EVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 950 l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
+.++...+.. . -.+....++.+++..+.++++... +.. +..||||.+|||.|||.|+.+|+||||||||.|+
T Consensus 358 i~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGI 432 (500)
T COG1129 358 ITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGI 432 (500)
T ss_pred eehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCc
Confidence 9887332221 1 244555566788899999986432 222 3469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|..+++.|.++|++++++|++||++|-++. |+...||||++|++ |+++-.=+
T Consensus 433 DVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~ 484 (500)
T COG1129 433 DVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELD 484 (500)
T ss_pred ccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEec
Confidence 999999999999999999999999999987 79999999999985 78776433
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=529.42 Aligned_cols=199 Identities=18% Similarity=0.274 Sum_probs=155.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++..+|+|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 478899988763 123599999999999999999999999999999999997653 4799988652
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqr 1001 (1106)
..+||++|++. ..+++.++..+......+ .. .+..+.++++.+++.+ ..+..+ ..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~----~~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GV----PEQKLRAHLGSFGVTGNLALQPM-----YTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CC----CHHHHHHHHHHCCCChHHhcCCc-----cccCHHHH
Confidence 35899999752 334555554322111111 11 1245778999999974 445443 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G~ 1080 (1106)
|||+|||+|+.+|++|||||||+|||+.+...+.+.|++. . .|||+||||+. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~-gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--Q-GGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--C-CEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999999888765 3 49999999997 47778999999985 6777 6664
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-52 Score=495.35 Aligned_cols=220 Identities=29% Similarity=0.353 Sum_probs=171.3
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ .-+++|++|+....+..||
T Consensus 15 ~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv 83 (530)
T COG0488 15 DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTV 83 (530)
T ss_pred CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccH
Confidence 457999999999999999999999999999999999999998 99998865 2379999999998889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHh----hcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKA----ASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~----~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+.+.-+..- .+++..+. +......++++.....+. ...++-+.+.++..++..||++.. ++.+++
T Consensus 84 ~~~v~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~- 153 (530)
T COG0488 84 LDYVIEGFGE-----LRELLAEL---EEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS- 153 (530)
T ss_pred HHHHHhhhHH-----HHHHHHHH---HHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh-
Confidence 9999876531 11111111 111111222211111100 011112344677888999999887 888876
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||.||++|++|+.+|++|+|||||++||..+..++-+.|++. .+ ++|+++|++..+-+.|++|+-++
T Consensus 154 ----LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 154 ----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 9999999999999999999999999999999999999999999852 34 67778999999999999999999
Q ss_pred CCeEE-EEcCHHHHH
Q 001291 400 DGQIV-YQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv-~~G~~~~~~ 413 (1106)
.|++. |.|..+...
T Consensus 225 ~g~l~~y~Gny~~~~ 239 (530)
T COG0488 225 RGKLTPYKGNYSSYL 239 (530)
T ss_pred CCceeEecCCHHHHH
Confidence 99875 777776554
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-51 Score=459.66 Aligned_cols=458 Identities=21% Similarity=0.294 Sum_probs=356.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1106)
...+++|||++|++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ --||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 467999999999999999999999999999999999999999 99999999998765553 35999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
++||.|||..+..-... .+ + ...+...+++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~-~~------~------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKG-GL------I------------------------DRRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCccccc-cc------c------------------------CHHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 99999999988642110 00 0 1112334678889999999999999998
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||=||||||.|-++|+.+|++|+|||||+-|-|....++++.+++++. .+.+|+.|+|-..|+.++||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~--~G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA--EGKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999864 45667778999999999999999999
Q ss_pred CCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhcCchhhhhhhhccCCCCcccCHHHHHHHHhhchhhhhhhhhhc
Q 001291 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQ 479 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1106)
.|+++-.-++ . . + .+.+++++
T Consensus 215 ~Gkvvgt~~~--~------------~--------------------------~---~t~~ela~---------------- 235 (501)
T COG3845 215 RGKVVGTVDP--V------------A--------------------------E---TTEEELAE---------------- 235 (501)
T ss_pred CCeEEeeecC--C------------C--------------------------C---CCHHHHHH----------------
Confidence 9998743210 0 0 0 00000000
Q ss_pred CCccccccccccccCCcccccHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHccccCCCCcccchhhHHH
Q 001291 480 TPFDKSKSHRAALTTKVYGVGKRELLKACTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDGGIYAG 559 (1106)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~R~~l~~~R~~~~~~~~~~~~~~~~li~g~~f~~~~~~~~~~~~~~~~~g 559 (1106)
T Consensus 236 -------------------------------------------------------------------------------- 235 (501)
T COG3845 236 -------------------------------------------------------------------------------- 235 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhhchhhHHhhhcCCcChHHHHHHHHHHHHHHHHHHHhhHHhhhhhhccccCchhHHHHH
Q 001291 560 ALFFTIVMPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQ 639 (1106)
Q Consensus 560 ~lff~l~~~~~~~~~~~~~~~~~~~vf~kqr~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~rf~~~ 639 (1106)
+ |+|-..
T Consensus 236 --------l---------------------------------------------------------MvG~~v-------- 242 (501)
T COG3845 236 --------L---------------------------------------------------------MVGREV-------- 242 (501)
T ss_pred --------H---------------------------------------------------------hcCCcc--------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccCccchhhHHHHHHhhcHHHHHHHHHHHHhhcCC
Q 001291 640 YLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMYAQNGILANEFLGH 719 (1106)
Q Consensus 640 ~l~~~~~~~~~~~l~~~i~~i~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isP~~y~~~al~~nef~~~ 719 (1106)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T COG3845 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCccchHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccccccccccccccccccC
Q 001291 720 SWKKFTPTSTESLGVQVLESREFFAHAYWYWLGLGALFGFILLLNVGFALALTFLNQFEKPRAVITEEFESDEQDNRIGG 799 (1106)
Q Consensus 720 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~i~~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1106)
.. .
T Consensus 243 --~~---------------------------------------------------------------------------~ 245 (501)
T COG3845 243 --VL---------------------------------------------------------------------------R 245 (501)
T ss_pred --cc---------------------------------------------------------------------------c
Confidence 00 0
Q ss_pred cccccCCCCCCCCCcccCCCCcccccccCCCccCCCcCCCCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeee
Q 001291 800 TVQLSNCGESGNDNRERNSSSSLTEAEASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF 879 (1106)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i 879 (1106)
.. ..+...| +..+.++|++-.-+ .+...+++|||+|
T Consensus 246 ------------~~--------------~~~~~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs~~V 281 (501)
T COG3845 246 ------------VV--------------KPPSTPG------EVVLEVEDLSVKDR------------RGVTAVKDVSFEV 281 (501)
T ss_pred ------------cc--------------cCCCCCC------CeEEEEeeeEeecC------------CCCceeeeeeeEE
Confidence 00 0000000 12456666653221 1246899999999
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC-C---hh-cccceEEEEccCCC---CCCCCCHHHHHH
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK-K---QE-TFARISGYCEQNDI---HSPFVTVYESLF 951 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~-~---~~-~~~~~~g~v~q~~~---~~~~~tv~e~l~ 951 (1106)
++||++||.|..|-|-+.|+.+|+|..+. ..|.|.++|.+. . .. ..+..+||||.+.. +.+.+|+.||+.
T Consensus 282 r~GEIvGIAGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~v 359 (501)
T COG3845 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLV 359 (501)
T ss_pred ecCcEEEEEecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhh
Confidence 99999999999999999999999997653 359999999985 2 12 22346899999874 467899999998
Q ss_pred Hhhhhc----CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 952 YSAWLR----LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 952 ~~~~~~----~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
+...-+ ...-.+....+.+..++++.++.....-.. ....||||++||+-+||+|.++|++|++.+||.|||
T Consensus 360 L~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLD 435 (501)
T COG3845 360 LGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLD 435 (501)
T ss_pred hhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCcccc
Confidence 765321 111345566778889999999987322111 134699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1028 ~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
..+.+.|.+.|.+.++.|++|+++|-|++ ++++.||||.+|.+ |+++...+..+
T Consensus 436 vgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 436 VGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 99999999999999999999999999998 79999999999985 79988887764
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-46 Score=377.95 Aligned_cols=215 Identities=25% Similarity=0.356 Sum_probs=189.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++.+| ++..+|+|||++|++||+++|+|||||||||||+||.|+..+ .+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~--~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP--DSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC--CCceEEECCEecc
Confidence 5667776554 467899999999999999999999999999999999998763 5899999996542
Q ss_pred ----hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 ----QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ----~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
-...|+.+|+|+|+..++|.+||.||+.++...- ...++++.++.+.+.|+.+||.+.++... .+||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2346778999999999999999999999875432 24567778888999999999999988874 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||||+|||||+.+|+++++|||||+|||+....+.+++++++++|.|+||+||++.+ ..+.+|||++|+ +|+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999986 678899999998 57999999
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
++.
T Consensus 219 ~p~ 221 (240)
T COG1126 219 PPE 221 (240)
T ss_pred CHH
Confidence 765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=371.28 Aligned_cols=220 Identities=27% Similarity=0.417 Sum_probs=190.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC----CccceEEEEcCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----VPERTAAYISQHDNHIG 239 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 239 (1106)
...+|+|||++|++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 467999999999999999999999999999999999999998 99999999765321 23578999999999999
Q ss_pred CCCHHHHHHHHHHh-cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 240 EMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
++||.||+..+... ++. ..++.+..+..+|+.+||.+.+|.+...
T Consensus 91 HlTvleNv~lap~~v~~~----------------------------------~k~eA~~~A~~lL~~VGL~~ka~~yP~q 136 (240)
T COG1126 91 HLTVLENVTLAPVKVKKL----------------------------------SKAEAREKALELLEKVGLADKADAYPAQ 136 (240)
T ss_pred cchHHHHHHhhhHHHcCC----------------------------------CHHHHHHHHHHHHHHcCchhhhhhCccc
Confidence 99999999987532 111 1223445677889999999999988765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++ .+.++++++|....+-+.+|||+.|
T Consensus 137 -----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~--eGmTMivVTHEM~FAr~VadrviFm 209 (240)
T COG1126 137 -----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE--EGMTMIIVTHEMGFAREVADRVIFM 209 (240)
T ss_pred -----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH--cCCeEEEEechhHHHHHhhheEEEe
Confidence 999999999999999999999999999999999999999999999986 3466666899999999999999999
Q ss_pred cCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHh
Q 001291 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~ 435 (1106)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999987 456766666777754
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=441.34 Aligned_cols=243 Identities=44% Similarity=0.783 Sum_probs=225.7
Q ss_pred CCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEc
Q 001291 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRIS 918 (1106)
Q Consensus 840 ~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~ 918 (1106)
.+..+.|+|+++..+.+.. ..+++|+|||+.++|||++|||||+||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 3457899999988775431 3468999999999999999999999999999999999988764 689999999
Q ss_pred CccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 919 GYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 919 g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
|++.....+++.+|||.|+|.+.+.+||+|.+.|++.+|++.....++++++|+++++.++|.+++|.++|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98887778889999999999999999999999999999999888889999999999999999999999999888889999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||||+||.+|+.||+||||||||||||..++..++++|++++++|+||||++|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 599999
Q ss_pred ecCCCchhHHHHHHHhC
Q 001291 1079 GPLGHHSCHLISYFEVC 1095 (1106)
Q Consensus 1079 G~~~~~~~~~~~yf~~~ 1095 (1106)
|+. +++++||+.+
T Consensus 253 G~~----~~~~~ff~~~ 265 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL 265 (613)
T ss_pred cCH----HHHHHHHHhC
Confidence 986 6799999875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=398.39 Aligned_cols=202 Identities=18% Similarity=0.223 Sum_probs=154.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||.|.|+. +..++++++|.|.+++.+|+||||||||||||++++|...+ ..|.+.-.-+.
T Consensus 389 vi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~- 453 (614)
T KOG0927|consen 389 VIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN- 453 (614)
T ss_pred eEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc-
Confidence 5788899887753 22589999999999999999999999999999999997663 46766532221
Q ss_pred ChhcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHH
Q 001291 923 KQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~~g~~~LS~G 999 (1106)
++++..|+.. +.-..++.|+++=. ...+...+.+..++..+||+... +.+ ..+||+|
T Consensus 454 -------~~~~y~Qh~~e~ldl~~s~le~~~~~--------~~~~~~~e~~r~ilgrfgLtgd~q~~p-----~~~LS~G 513 (614)
T KOG0927|consen 454 -------KLPRYNQHLAEQLDLDKSSLEFMMPK--------FPDEKELEEMRSILGRFGLTGDAQVVP-----MSQLSDG 513 (614)
T ss_pred -------cchhhhhhhHhhcCcchhHHHHHHHh--------ccccchHHHHHHHHHHhCCCccccccc-----hhhcccc
Confidence 1233344322 11234555654311 11134455678899999998433 333 3579999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||+||.+|+.++..|.||+|||||+|||..+...+.++|.+. ..+||+||||..+ |.+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999875 4689999999875 788899999999998889988
Q ss_pred cCCC
Q 001291 1080 PLGH 1083 (1106)
Q Consensus 1080 ~~~~ 1083 (1106)
++..
T Consensus 590 ~i~~ 593 (614)
T KOG0927|consen 590 DIEI 593 (614)
T ss_pred cHHH
Confidence 7653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=372.03 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=187.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+ +.++|+||||+|++|++++|+||||||||||+|+|+|..++ .+|+|.+.|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p--~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC--CcceEEEccccc
Confidence 478899998875 22599999999999999999999999999999999997663 589999999887
Q ss_pred ChhcccceEEEEccCCCC--CCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 923 KQETFARISGYCEQNDIH--SPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~--~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.+...+..+|||||.... ...+||+|-+..+...+.. .....+..++.++++|+.+|+.+++++.++ +||||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGG 143 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG-----ELSGG 143 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc-----ccCcH
Confidence 654445679999996532 2348999999887544322 111233446789999999999999999875 59999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|+||+.|||||+++|++|+|||||+|+|+.++..++++|++++++|+|||+|+||++ .+.++||+++.|+ +++++.|
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G 220 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASG 220 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEecc
Confidence 999999999999999999999999999999999999999999988999999999998 5899999999996 4799999
Q ss_pred cCCCc
Q 001291 1080 PLGHH 1084 (1106)
Q Consensus 1080 ~~~~~ 1084 (1106)
++.+-
T Consensus 221 ~~~~~ 225 (254)
T COG1121 221 PPEEV 225 (254)
T ss_pred Chhhc
Confidence 98863
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=375.81 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=190.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.+++|+..+... ..+...+|+|||++|++||++||+|.||||||||++++.++..+ .+|.|.++|.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P--tsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP--TSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC--CCceEEEcCEecc
Confidence 4567776444320 11235799999999999999999999999999999999998764 5899999997653
Q ss_pred h------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
. ...|+.+|+++|++.++...||+||+.|...+.. .++++.++++.++++.+||.+..+... .+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYP-----AQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCc-----hhcC
Confidence 2 3467789999999999999999999999877653 567888899999999999998888763 4799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|+|||+|||||+|||++.+.|.++|+++.++ |.|||+|||+|+. +.+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999654 9999999999984 7889999999985 7999
Q ss_pred EEecCCC
Q 001291 1077 YVGPLGH 1083 (1106)
Q Consensus 1077 ~~G~~~~ 1083 (1106)
+.|+..+
T Consensus 222 E~G~v~~ 228 (339)
T COG1135 222 EEGTVSE 228 (339)
T ss_pred EeccHHH
Confidence 9998764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=375.60 Aligned_cols=227 Identities=27% Similarity=0.398 Sum_probs=194.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+..+|+++.|+ ++.+|+||||+|++|++++|+|||||||||||++|+|..++ .+|.|.++|.++.
T Consensus 3 L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchh
Confidence 56788888774 46799999999999999999999999999999999997763 4899999999875
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ..+++.+||+||.+...+.+||+|-+.++..-+... ....++.++.++++|+.+++.+++++.+ .+||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChh
Confidence 4 456789999999998888899999999886543322 1234444557999999999999999875 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||+.|||||+++|+||+||||||+||...+..++++++++. ++|.|||+++||++. ...+||++++|++ |+++..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~ 220 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQ 220 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEee
Confidence 9999999999999999999999999999999999999999998 459999999999985 7789999999985 799999
Q ss_pred ecCCCc--hhHHHHHH
Q 001291 1079 GPLGHH--SCHLISYF 1092 (1106)
Q Consensus 1079 G~~~~~--~~~~~~yf 1092 (1106)
|++.+- ...+-+.|
T Consensus 221 G~p~evlT~e~l~~Vy 236 (258)
T COG1120 221 GTPEEVLTEENLREVY 236 (258)
T ss_pred cCcchhcCHHHHHHHh
Confidence 998753 34455555
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=389.87 Aligned_cols=217 Identities=30% Similarity=0.438 Sum_probs=196.9
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc-ceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|++|+.||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..+||+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 999999999999999999999999999999999999998 99999999999998774 88999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
||+|+.+.++.. .++.+.+++++.+.|+|++..|+.+.. ||
T Consensus 95 Niaf~Lk~~~~~----------------------------------k~ei~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVP----------------------------------KAEIDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCc----------------------------------hHHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999999887541 123456788999999999999998765 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||++||||+.+|++++||||+|.||...+.++...++++. ..-+++++.++|+..|++.++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh-~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLH-ERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHH-HhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999864 4556778889999999999999999999999999
Q ss_pred EcCHHHHHHHHHhcCCCCCCCCChhHHHH
Q 001291 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1106)
Q Consensus 406 ~G~~~~~~~~f~~~G~~~p~~~~~ad~l~ 434 (1106)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999999 45677777777764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-43 Score=358.92 Aligned_cols=234 Identities=25% Similarity=0.368 Sum_probs=202.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.+++|+.++ +++.+++||||+|++||+++|+||||+||||||++|.|..++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 47777777553 567899999999999999999999999999999999998774 589999999986
Q ss_pred Ch------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCC
Q 001291 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNG 995 (1106)
Q Consensus 923 ~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~~g~~~ 995 (1106)
.+ ...++++|+++|.-.++..+||+||+.|.. |.....+.+..++.+..-|+.+||... .+.. +++
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 43 235678999999999999999999999864 334456677777788888999999876 5554 457
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||++||++|||||+.+|+|||+||||+||||.+...+-++|+++.++ |.|+++||||++ +++..|||+++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999866 999999999998 58999999999985 79
Q ss_pred EEEEecCCC----chhHHHHHHHhCCCCcc
Q 001291 1075 EVYVGPLGH----HSCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1075 ~~~~G~~~~----~~~~~~~yf~~~~g~~~ 1100 (1106)
++..|++.+ +...+-+||.+.++=|-
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~gpi 253 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRDGPI 253 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCCCce
Confidence 999999875 34558899998887654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-43 Score=370.69 Aligned_cols=224 Identities=28% Similarity=0.373 Sum_probs=196.2
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1106)
...++|+|||++|++|++.+|+|+||||||||++++.++..|+ +|+|.++|.++..... ++.||+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4567999999999999999999999999999999999999999 9999999988765532 478999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
++...||.||++|..+..+.. .++.+.++.++++.+||++.+|.+.
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999998876531 1234567889999999999999887
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
.. |||||||||+|||||+.+|+||+.|||||+|||.|+..|+++|+++.+. -+.+|+.++|.++-+-++||||.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~-lglTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRE-LGLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHH-cCCEEEEEechHHHHHHHhhhhe
Confidence 65 9999999999999999999999999999999999999999999998765 46677778999999999999999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 001291 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 437 (1106)
+|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999988 34565555555665543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=363.85 Aligned_cols=207 Identities=26% Similarity=0.383 Sum_probs=180.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++++++++. ...+|+||||+|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 356777776653 35799999999999999999999999999999999998774 589999999887
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ....+|||+|++.++|..||+||+.|+...+. ...+++++++.++++.+||.++.++. +.+|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 24568999999999999999999999876653 34556667899999999999999987 4579999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecC-CEE
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GRE 1075 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~g-G~~ 1075 (1106)
||+|||||+.+|+||+||||+++||+.++..+++.+.++.+ .++|||+||||.+ |....+|||++|.++ |++
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999999999999864 5899999999998 577789999999875 544
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=389.98 Aligned_cols=224 Identities=29% Similarity=0.427 Sum_probs=201.5
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1106)
...+|+|+|++|++||+++|+|||||||||||++|||+..|+ +|+|.++|.+++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 467999999999999999999999999999999999999999 9999999999998766 578999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||++|+.+.++.. ..++...+++++++.++|++.+++.+..
T Consensus 94 V~~NVafGLk~~~~~---------------------------------~~~~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKL---------------------------------KKAEIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCC---------------------------------CHHHHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999998744311 1122446789999999999999988865
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||+|||++||||+.+|++||||||.|+||..-+.++...++++.+.. +.+.|.++|+..|++.++|+|++|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 99999999999999999999999999999999999999999999987655 6777779999999999999999999999
Q ss_pred EEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhhc
Q 001291 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1106)
Q Consensus 403 iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v~ 437 (1106)
|...|+++++ |..|...-+|+|+-+..
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~N 241 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGESN 241 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcce
Confidence 9999999999 56788888899987643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=358.26 Aligned_cols=208 Identities=27% Similarity=0.416 Sum_probs=186.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1106)
++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||.++.+... +|.+|||-|.-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999998 9999999999877544 6899999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc--cccccccC
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI--CADTMVGD 318 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~ 318 (1106)
+||.|||++-..+.+.. .++.+.+++++|+.+||+. .++++..+
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 99999999987776542 1234567899999999974 77777655
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++-+.. +++|+.++|+..|++.++|||++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEe
Confidence 99999999999999999999999999999999999999999998875544 566677899999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999974
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=357.72 Aligned_cols=215 Identities=26% Similarity=0.358 Sum_probs=189.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++|+||+..| +++.+++|+||+|++||+++++|||||||||+|++|.+...+ .+|+|+|+|.++.
T Consensus 2 I~~~nvsk~y-------------~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRY-------------GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhc-------------CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 4677777544 356799999999999999999999999999999999998774 5899999999876
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLST 998 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~--~~~~~~~~~g~~~LS~ 998 (1106)
. ...||.+|||-|...++|.+||.||+.+--.+. ..++++.+++++|+|++++|.+ +.++. +++|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 4 457889999999999999999999998765443 4567778889999999999975 66665 467999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||+|||.+||||+++|+||+||||+++|||-++..+++.+.++.++ |+|||+||||++ +.+.++|||.+|+ +|+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999754 999999999998 6889999999998 689999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.+++.+
T Consensus 217 ~~~P~~ 222 (309)
T COG1125 217 YDTPDE 222 (309)
T ss_pred eCCHHH
Confidence 998764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=415.75 Aligned_cols=253 Identities=33% Similarity=0.592 Sum_probs=215.3
Q ss_pred CCceeeecceeeeeeccch----------------hhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 840 EPYSLTFDEVVYSVDMPQQ----------------MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 840 ~~~~l~f~~v~y~v~~p~~----------------~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
.+.++.|.++.|.++.... .+.....++++.+|+|||+++++||++||+||||||||||+++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 3678999999999875531 011112345678999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc
Q 001291 904 GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983 (1106)
Q Consensus 904 g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~ 983 (1106)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|.+.++.+.....+++++.++++++.++|.+.
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999876432 345689999999999999999999998877655444455566778999999999998
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhc
Q 001291 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1063 (1106)
Q Consensus 984 ~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~ 1063 (1106)
.+..++.....+||||||||++||+||+.+|+||||||||+|||+.++..+++.|++++++|+|||+++||++.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 88887765567899999999999999999999999999999999999999999999998889999999999986688999
Q ss_pred CeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCC
Q 001291 1064 DELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDA 1098 (1106)
Q Consensus 1064 D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~ 1098 (1106)
|++++|++ |+++|.|+. .++++||+++.-.
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G~~ 304 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVGFS 304 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCCCC
Confidence 99999984 799999985 5899999998543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=351.46 Aligned_cols=225 Identities=26% Similarity=0.322 Sum_probs=191.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.+++++-.|| +++++|+||||+|++||++||+|+|||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 467788775553 46789999999999999999999999999999999999765 3589999999764
Q ss_pred Ch------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-----CCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001291 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-----PEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991 (1106)
Q Consensus 923 ~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~ 991 (1106)
.. ..+++.+|+++|++.+.+.++|.+|++.+..-+.+ .....++.+..+-++|+.+|+.+.+..+.
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 34577899999999999999999999887533321 23344566667889999999999887775
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
++|||||+|||+|||||+++|+|||.|||+++|||.+++.||+.|+++.+ +|.|||++.|+.++ ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 46999999999999999999999999999999999999999999999974 59999999999986 678999999998
Q ss_pred cCCEEEEEecCCCchhHH
Q 001291 1071 RGGREVYVGPLGHHSCHL 1088 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~~~~~~ 1088 (1106)
. |+++|.|+..+.....
T Consensus 223 ~-G~ivfDg~~~el~~~~ 239 (258)
T COG3638 223 A-GRIVFDGPASELTDEA 239 (258)
T ss_pred C-CcEEEeCChhhhhHHH
Confidence 5 7999999988754443
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=363.17 Aligned_cols=225 Identities=28% Similarity=0.453 Sum_probs=192.2
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCc---cCCCCCc-cceEEEEcCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NMDEFVP-ERTAAYISQHDNHI 238 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 238 (1106)
....+++|||+.|+.||+++|+|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 5555333 47899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
++|||.+||+|+.+++.. .| ...+.+.+++++|+.+.|++.++.+.-
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p-------------~~~~~r~rv~elL~lvqL~~la~ryP~- 136 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RP-------------SEAEIRARVEELLRLVQLEGLADRYPA- 136 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CC-------------ChhhHHHHHHHHHHHhcccchhhcCch-
Confidence 999999999999877521 01 112234568889999999999988765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
+|||||||||++||||+..|+||+||||+++||...+.++-+.|+++.... +.+.+.++|+..|++++||+|++|
T Consensus 137 ----QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 137 ----QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred ----hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEe
Confidence 499999999999999999999999999999999999999999999875543 556666899999999999999999
Q ss_pred cCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001291 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1106)
++|+|...||++++. ..|...-++.|+-++
T Consensus 212 ~~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~~ 241 (345)
T COG1118 212 NQGRIEQVGPPDEVY--------DHPASRFVARFLGEV 241 (345)
T ss_pred cCCeeeeeCCHHHHh--------cCCCccceecccccc
Confidence 999999999999984 446555566665543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=355.44 Aligned_cols=193 Identities=29% Similarity=0.432 Sum_probs=166.7
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh------hcc-cceEEEEccCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETF-ARISGYCEQNDIHS 941 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~g~v~q~~~~~ 941 (1106)
..+|++|||+|++||++||+|||||||||||++|.|...+ .+|.+.++|.+... ..+ ++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998764 58999999976532 223 34699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLD 1020 (1106)
|.+||.||+.+...+... .....++.++++++.+||.+..+ .. +.+|||||||||+|||||+.+|+|||.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999987655432 22245667889999999986665 44 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
|||.+||.++.+.|+++++++.++ |+|||++|||+. +...|||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCe
Confidence 999999999999999999999765 999999999984 678999999998754
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=365.44 Aligned_cols=210 Identities=32% Similarity=0.468 Sum_probs=183.3
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1106)
++++|+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|.++.+... .|.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 457999999999999999999999999999999999999998 9999999999877654 3789999999888889
Q ss_pred CCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 241 MTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
+||+|-+.++..-. +. ++ ...++....++.+|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-------------------~~------------~~~~~D~~~v~~aL~~~~~~~la~r~~~~- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-------------------FG------------RPSKEDEEIVEEALELLGLEHLADRPVDE- 138 (258)
T ss_pred cEEeehHhhcCCccccc-------------------cc------------CCCHhHHHHHHHHHHHhCcHHHhcCcccc-
Confidence 99999999975321 10 00 01112234688899999999999999877
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||.||+||+.+|++|+||||||+||...+.++++.++++.+.. +.+++.++|+...+..+||++++|+
T Consensus 139 ----LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 139 ----LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred ----cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999998754 4555667899999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998875
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=378.06 Aligned_cols=212 Identities=32% Similarity=0.444 Sum_probs=185.2
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~t 945 (1106)
++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 46799999999999999999999999999999999998764 58999999987654 456678999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
|+|++.|.+.++.... ...++.++++++.++|.+..++.+ .+||+||||||.||+||+.+|++|||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~-----~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcch-----hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999998886432 445567899999999998555553 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-ceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhC
Q 001291 1026 LDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVC 1095 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g-~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~ 1095 (1106)
||+.++..+++.|++++++| +||+++||+++ ++...||+|++|++ |++++.|+.. .+.+.|...
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~~----~l~~~~~~~ 231 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTPE----ELKEKFGGK 231 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCHH----HHHHhhccC
Confidence 99999999999999999887 89999999998 68888999999985 7999999653 355554443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=343.55 Aligned_cols=220 Identities=23% Similarity=0.301 Sum_probs=187.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC---CCCceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~---~~~~~~~G~i~i~g 919 (1106)
.+..+|++.+|. ++.+|+|||+.|++++++||||||||||||||+++.+. .++-..+|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 577888887764 46799999999999999999999999999999999984 33456789999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.++.. ..+|+.+|.|+|.|.-+| +|++||+.|+.++....+ ++.++.|++.|+...|++-........+ .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~sa-~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKSA-L 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCCc-c
Confidence 88643 346788999999999998 999999999987764332 6677889999999999864333333222 3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+|||||+|||||||||+.+|+|||||||||+|||.+...|-++|.+++ +.-|||+|||.|. ......|+..++.. |+
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~ 225 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GE 225 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cE
Confidence 599999999999999999999999999999999999999999999997 4699999999997 46778999999986 69
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++++|+...
T Consensus 226 LvE~g~T~~ 234 (253)
T COG1117 226 LVEFGPTDK 234 (253)
T ss_pred EEEEcCHHh
Confidence 999998753
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=377.43 Aligned_cols=212 Identities=33% Similarity=0.464 Sum_probs=186.3
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC--CccceEEEEcCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--VPERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1106)
.+.+|+|||+++++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 468999999999999999999999999999999999999998 99999999887652 3357899999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+|||.|.+++.+... ......++++++.+||++.+++.++
T Consensus 94 T~~e~l~~~~~l~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 135 (293)
T COG1131 94 TVRENLEFFARLYGLSK----------------------------------EEAEERIEELLELFGLEDKANKKVR---- 135 (293)
T ss_pred cHHHHHHHHHHHhCCCh----------------------------------hHHHHHHHHHHHHcCCchhhCcchh----
Confidence 99999999998876421 0122457889999999986666665
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+||+|||||++||.||+++|++|||||||+|||+.++.++++.|++++.. ++++|+..+|...++..+||+|++|++|
T Consensus 136 -~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 136 -TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred -hcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 49999999999999999999999999999999999999999999998764 4466666788899999999999999999
Q ss_pred eEEEEcCHHHHHHHHHh
Q 001291 402 QIVYQGPRELVLEFFES 418 (1106)
Q Consensus 402 ~iv~~G~~~~~~~~f~~ 418 (1106)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998765543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=335.61 Aligned_cols=215 Identities=27% Similarity=0.333 Sum_probs=184.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.|++|+-.|+. +.++|+||||+|++||++-|+||||||||||+++|++...+ ..|.|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p--t~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP--TRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC--CCceEEECCeecc
Confidence 567888765542 35699999999999999999999999999999999997653 5899999999864
Q ss_pred h------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
. .-.+|++|+|+|+..+.+..||+||+.|...... ....+.++++.++|+.+||.+..+.. +.+||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 3 1257889999999999999999999999876553 34566778899999999999988876 35799
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||||||++||||++.+|++|+.||||.+|||..+..||+++.++.+.|.|||+.|||.++ +...-.|++.|.+ |+++.
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~l-v~~~~~rvl~l~~-Grl~~ 217 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLEL-VNRMRHRVLALED-GRLVR 217 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHH-HHhccCcEEEEeC-CEEEe
Confidence 999999999999999999999999999999999999999999999899999999999764 5555678888875 78887
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
....|
T Consensus 218 d~~~g 222 (223)
T COG2884 218 DESRG 222 (223)
T ss_pred ccccC
Confidence 65443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=354.36 Aligned_cols=194 Identities=27% Similarity=0.402 Sum_probs=173.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+|+|+|++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++. .+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999998 999999999883 4567899999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.|+....+.. ..+...+++.+|+.+||....|..... |
T Consensus 91 ~NV~l~l~~~~~~----------------------------------~~e~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKS----------------------------------KAEARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccc----------------------------------hHhHHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 9999998776421 111233678899999999999988765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--Ce
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQ 402 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~ 402 (1106)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.+|+.++|+.+|+..++|||++|++ |+
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~P~~ 210 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNRPGR 210 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCCCcc
Confidence 9999999999999999999999999999999999999999998887654 56677789999999999999999998 44
Q ss_pred E
Q 001291 403 I 403 (1106)
Q Consensus 403 i 403 (1106)
|
T Consensus 211 i 211 (248)
T COG1116 211 I 211 (248)
T ss_pred e
Confidence 4
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=344.75 Aligned_cols=210 Identities=27% Similarity=0.390 Sum_probs=181.5
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1106)
..+.||+|||++|++||+++|+|||||||||||+.|.|+++|+ +|+|.++|.++..... ++++|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 3467999999999999999999999999999999999999998 9999999999865532 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc-cccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~ 315 (1106)
+|..+||+||+.|..+-.. .+ | ....+..+..-|+..||... +|.+
T Consensus 96 LFssltV~eNVafplre~~---------~l----------p--------------~~~i~~lv~~KL~~VGL~~~~~~~~ 142 (263)
T COG1127 96 LFSSLTVFENVAFPLREHT---------KL----------P--------------ESLIRELVLMKLELVGLRGAAADLY 142 (263)
T ss_pred cccccchhHhhheehHhhc---------cC----------C--------------HHHHHHHHHHHHHhcCCChhhhhhC
Confidence 9999999999999765321 01 1 11123345555888999877 7777
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
..+ ||||++||+++|||++.+|+++|+||||+||||.++..+.++++++.+.. +.++++++|+.++++..+|+|
T Consensus 143 PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~l-g~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 143 PSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL-GLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred chh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhh-CCEEEEEECChHHHHhhhceE
Confidence 765 99999999999999999999999999999999999999999999987654 556666899999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|.+|+|+.+|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=339.78 Aligned_cols=202 Identities=28% Similarity=0.371 Sum_probs=183.9
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|.++|.+... ...++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998764 58999999998643 34578899999877888899999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
|||.|.+.+. +...++.+++++++.+.++|.++.|+.++ +||.||||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999998886 34567778889999999999999999975 699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1028 ~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
..+.+.+.+.++++.++|++||++||.++ ++...||+++++++ |++++.|+...
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~~ 219 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHHH
Confidence 99999999999999999999999999997 78889999999986 78999998764
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=338.21 Aligned_cols=211 Identities=31% Similarity=0.363 Sum_probs=186.5
Q ss_pred CccccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCC
Q 001291 160 STKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNH 237 (1106)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1106)
+.+....+++||||.++.|++++|+|||||||||+|++|++++.|+ +|+|+++|.+..... .++.+|.++.+..+
T Consensus 10 ~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~gl 86 (245)
T COG4555 10 SYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGL 86 (245)
T ss_pred hccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcCh
Confidence 3344456999999999999999999999999999999999999999 999999999875432 36889999987889
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
+..||++|||.|.+++.+.. ..+.+.+++.+.+.|+|..|.|+.+|
T Consensus 87 Y~RlT~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~ 132 (245)
T COG4555 87 YARLTARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVG 132 (245)
T ss_pred hhhhhHHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHh
Confidence 99999999999999876532 12234567889999999999999998
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ +|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++. ..+.+|+..+|..+|+..+||+|++
T Consensus 133 ~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrviv 205 (245)
T COG4555 133 E-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIV 205 (245)
T ss_pred h-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEE
Confidence 7 99999999999999999999999999999999999999999999863 3456677789999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+.|+++++.+
T Consensus 206 lh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 206 LHKGEVVLEGSIEALDA 222 (245)
T ss_pred EecCcEEEcCCHHHHHH
Confidence 99999999999988764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=358.51 Aligned_cols=207 Identities=30% Similarity=0.455 Sum_probs=185.3
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc---cCCh-hcccceEEEEccCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---PKKQ-ETFARISGYCEQNDIHSP 942 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~g~v~q~~~~~~ 942 (1106)
+...+++|||++|+.||++||.|||||||||||++|+|..++ ..|.|.++|. +.++ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 456789999999999999999999999999999999998874 5899999998 5444 334578999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
.|||.+|+.|+...+ ....+..+.+.+++++|+.++|.++.+... .+|||||||||++||||+.+|++||||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998776 233456677888999999999999998874 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
+++||+.-++.+.+.|+++.++ |.|+|+||||++ +..+.||||++|++ |+|...|+..+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~e 224 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPDE 224 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHHH
Confidence 9999999999999999999876 999999999998 79999999999986 78999998764
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=353.82 Aligned_cols=208 Identities=28% Similarity=0.437 Sum_probs=177.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC--CCCCCCCH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD--NHIGEMTV 243 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1106)
++|+|||+.+++|++++|+||||||||||+|+|+|++.|. +|+|.++|.+......+..||||||.. .+-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 5999999999999999999999999999999999999998 999999999887766667899999953 33445899
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+|.+..+..-+. + + .... ..+.+..++++|+.+|+.+.+|..+|+
T Consensus 95 ~d~V~~g~~~~~-g-~---~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~----- 139 (254)
T COG1121 95 KDVVLLGRYGKK-G-W---FRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIGE----- 139 (254)
T ss_pred HHHHHccCcccc-c-c---cccc-------------------------cHHHHHHHHHHHHHcCchhhhCCcccc-----
Confidence 999998732211 0 0 0000 111245688999999999999999998
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|++.|+++.+. +.+|++++|+...+.++||+|+.| ++++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~L-n~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICL-NRHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEE-cCee
Confidence 9999999999999999999999999999999999999999999998764 566777899999999999999999 5778
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
++.|+++++..
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999998753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=369.90 Aligned_cols=229 Identities=28% Similarity=0.380 Sum_probs=198.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++-++. +..+++|||++|+.||+++|+|||||||||||++|+|+.. +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 466777765543 2229999999999999999999999999999999999876 3589999999987
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
+. ....|.+++|+|+..++|.|||+||+.|+...+. ..+++.+++++++.+.++|.++.++.. .+||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhH
Confidence 66 3456789999999999999999999999987763 456777889999999999999999874 57999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. +.+..+||+.+|+ +|++...|+
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998754 899999999975 7888999999998 689999998
Q ss_pred CCC----chhHHHHHHHhCC
Q 001291 1081 LGH----HSCHLISYFEVCP 1096 (1106)
Q Consensus 1081 ~~~----~~~~~~~yf~~~~ 1096 (1106)
+.+ -.+..+.-|-+.|
T Consensus 218 p~ely~~P~n~fVA~FiG~p 237 (338)
T COG3839 218 PLELYERPANLFVAGFIGSP 237 (338)
T ss_pred hHHHhhCccchhhhhhcCCh
Confidence 764 2445666666544
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=409.27 Aligned_cols=224 Identities=41% Similarity=0.709 Sum_probs=202.6
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
+++++|+|||+++++||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|++.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999986543 358999999998765566778999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC-CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG-VNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g-~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
|+||+.|++.++.+.....+++++.++++++.++|.+..|..+|.++ ..+||||||||++||+||+.+|+||+|||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999988876666666777789999999999999999988654 45799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhC
Q 001291 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVC 1095 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~ 1095 (1106)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~ 261 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL 261 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc
Confidence 9999999999999999988899999999999877899999999998 5799999986 5789999997
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=371.55 Aligned_cols=227 Identities=26% Similarity=0.386 Sum_probs=195.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||+-.| ++..+++|||++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 46777776444 456899999999999999999999999999999999998774 589999999988
Q ss_pred Chh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
... ..+|.+|+|+|+..++|.+||.||+.|+..++ .....++.+++++++++.++|.++.++.+ .+||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 653 34678999999999999999999999997643 23445667788999999999999988874 57999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++||||||.|+||.+-+..++.-++++.+ .|.|.|++|||.+ +.+..+|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 999999999999999999999999999999999999999865 4999999999987 68889999999975 79999998
Q ss_pred CCC----chhHHHHHHH
Q 001291 1081 LGH----HSCHLISYFE 1093 (1106)
Q Consensus 1081 ~~~----~~~~~~~yf~ 1093 (1106)
+.+ ..+..+..|=
T Consensus 221 P~eiY~~P~~~fVA~Fi 237 (352)
T COG3842 221 PEEIYERPATRFVADFI 237 (352)
T ss_pred HHHHhhCcchHHHHHHh
Confidence 774 2344555543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=345.69 Aligned_cols=196 Identities=28% Similarity=0.438 Sum_probs=168.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1106)
..++|++||+.|++||+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 378999999999999999999999999999999999999998 9999999988876542 357999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc-cc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD-TM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~ 315 (1106)
++|++||+||+...+.+.+.... .....++.+++.+||++..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999998766543110 12335677899999997666 66
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+.+ |||||||||+|||||+.+|+++|.||||.+||+.++..|++.++++.+.. ++++++++|+ +++...|||+
T Consensus 140 p~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~ 212 (226)
T COG1136 140 PSE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRV 212 (226)
T ss_pred chh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEE
Confidence 765 99999999999999999999999999999999999999999999987654 4555556776 4677899999
Q ss_pred EEecCCeE
Q 001291 396 ILLSDGQI 403 (1106)
Q Consensus 396 ilL~~G~i 403 (1106)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=339.53 Aligned_cols=217 Identities=25% Similarity=0.358 Sum_probs=182.7
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1106)
..+++|+|||+.|++|||++|+|||||||||||++|.|..+|+ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 4467999999999999999999999999999999999999998 9999999988765432 468999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+.+.+||.+|+..+...+. .. ...-.++.+ ++.+..+-..|+.+|+.+.+.+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~---------~~slfglfs---------------k~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--ST---------WRSLFGLFS---------------KEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hH---------HHHHhCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998754221 01 111112221 122334566799999999999888
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
+. |||||+|||+|||||+.+|+++|-|||+++||+.++.++++.|+++....+.|+|+ .+|..+-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~-nLH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIV-NLHQVDLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEE-EechHHHHHHHHhhhe
Confidence 76 99999999999999999999999999999999999999999999998766555555 5567889999999999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 001291 397 LLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1106)
-|++|+|+|+||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=335.18 Aligned_cols=222 Identities=26% Similarity=0.396 Sum_probs=182.5
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDN 236 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 236 (1106)
.+.+|+|||+.|+++++||++|||||||||||+++..+.+ |..+++|+|.++|+++.+. ..++++|+|+|.+.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999998754 4578899999999998553 23689999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
-|| +|++||++|+.+.+|... + +.+.+++..|+.-+|- ...|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~--------------------------------~ldeiVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--K--------------------------------ELDEIVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--H--------------------------------HHHHHHHHHHHHhHhHHHhHHHh
Confidence 999 999999999999887522 1 1123445555555553 233333
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
= ....+|||||+||++|||||+-+|+|||||||||+|||.++..|-+++.++. ..-+|++++|.+..+.+..|+.
T Consensus 144 ~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 H--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred h--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHHhHhh
Confidence 2 2235699999999999999999999999999999999999999999999874 3566777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHH
Q 001291 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1106)
..+..|++|+.|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999988 4566666555554
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=365.80 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=185.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++..++ +..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 578888887663 34699999999999999999999999999999999998763 589999999886
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++.+|||+|++.+++.+|++||+.|.+.++. ....+....++++++.+++.+..++.+ .+||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 2345779999999999999999999987665432 223344556789999999988777765 3699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999997 57888999999985 79999987
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
+.
T Consensus 222 ~~ 223 (306)
T PRK13537 222 PH 223 (306)
T ss_pred HH
Confidence 64
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=366.79 Aligned_cols=206 Identities=24% Similarity=0.353 Sum_probs=179.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||+++++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998865432 45799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+....+.. ..+...++.++++.+||++..|..++.
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------------------------------KDEIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999976543210 011223567789999999988888765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+|||||+.+|++|+|||||++||+.++..+++.|+++.+.. +.+|+.++|+.+.+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999986543 455666889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=370.14 Aligned_cols=207 Identities=27% Similarity=0.404 Sum_probs=181.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999998865443 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+.++.. ..+....++.+++.+||++..|+.+.+
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~l~L~~~~~~~~~~----- 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------------------------------RAEVAERVAELLDLVGLPGSERKYPGQ----- 134 (353)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhCChhh-----
Confidence 99999987543210 011234578899999999999887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|+++|||||+++||..++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRR-LGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 355667788999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=367.73 Aligned_cols=218 Identities=22% Similarity=0.289 Sum_probs=185.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.+ .....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5678888776421 0124699999999999999999999999999999999998764 5899999998764
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ..++.+||++|+..+++..||+||+.|....+ ....++.++++.++++.++|.+..+..+ .+||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 23567999999999998999999999875433 2334455667899999999998877764 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|++|+||||||+||+.++..++++|+++.++ |.|||++||+++ .+.+.||++++|+ +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999997 4778899999998 47999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 221 ~~g~~~ 226 (343)
T TIGR02314 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 999864
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=369.36 Aligned_cols=208 Identities=23% Similarity=0.343 Sum_probs=182.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCce--eEEEECCccCCCCCc-cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVS--GRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|+++|+ + |+|.++|.++....+ ++.++||+|+..+|+++
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 35999999999999999999999999999999999999998 8 999999998865443 46799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+.+..+.. ..+....++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------------------------------KADIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999987643211 011223577889999999999988865
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998765432567777899999999999999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++..|+++++.+
T Consensus 216 ~i~~~g~~~~~~~ 228 (362)
T TIGR03258 216 RLAAHGEPQALYD 228 (362)
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=368.61 Aligned_cols=206 Identities=22% Similarity=0.364 Sum_probs=181.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+||++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999998876544 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+.++.. ..+....++++++.+||.+..|..+.+
T Consensus 96 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVP----------------------------------KEERKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999987644321 011234577889999999988887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||+++||+.++.++.+.|+++.+. .+++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQ-FNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987653 355667789999999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=348.90 Aligned_cols=214 Identities=23% Similarity=0.334 Sum_probs=187.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.+++++|+|+. +..+|+|+|++|++|+.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 567888888752 25799999999999999999999999999999999998764 4799999998854
Q ss_pred ----hhcccceEEEEccCCCCC-CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 924 ----QETFARISGYCEQNDIHS-PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 924 ----~~~~~~~~g~v~q~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
...+++.+|||+|++..+ ..-||.|.+.|+.... ..+.++.+++++++++.+++.+++++. +.+|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345678899999999765 4579999999986433 445566888999999999999998876 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||||||+||.+|+.+|++|+|||||||||+.+++.+++.++++..+ |.|||++|||++ .+.++||++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999998 58888999999985 78999
Q ss_pred EecC
Q 001291 1078 VGPL 1081 (1106)
Q Consensus 1078 ~G~~ 1081 (1106)
.|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=370.32 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=181.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999998 9999999998865443 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+....++++++.+||++..+..+++
T Consensus 94 ~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------------------------------KAEIEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999987543210 011223567889999999999888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~-~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRR-LKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999987653 356677788999999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=374.16 Aligned_cols=215 Identities=27% Similarity=0.438 Sum_probs=180.6
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|+||..+ +.++|+|+||+|+|||.||||||||+||||+.++|..... |.+|.|.+||+|
T Consensus 464 G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~~ 531 (716)
T KOG0058|consen 464 GVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGVP 531 (716)
T ss_pred ceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCee
Confidence 4799999999999753 5689999999999999999999999999999999998766 458999999999
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHc-------CCCcccccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-------ELKPLRQSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-------~l~~~~~~~~~~~ 991 (1106)
+++ ..+++++|+|.|+|.++. -||+|||.|+.. ....++ ++++.+.. ++.+-.|..+|..
T Consensus 532 i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VGEk 601 (716)
T KOG0058|consen 532 ISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVGEK 601 (716)
T ss_pred hhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccCCc
Confidence 865 446788999999999875 699999999853 222222 22332222 3444566777777
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
|. +||||||||++|||||++||.||||||+||+||++++..|+++|.++.+ ++|||+|+|+++ ..+.+|+|+++++
T Consensus 602 G~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~ 677 (716)
T KOG0058|consen 602 GS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK 677 (716)
T ss_pred cc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC
Confidence 65 5999999999999999999999999999999999999999999998865 699999999997 4689999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|...+
T Consensus 678 -G~V~E~G~h~e 688 (716)
T KOG0058|consen 678 -GRVVEMGTHDE 688 (716)
T ss_pred -CeEEecccHHH
Confidence 79999986543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=345.16 Aligned_cols=207 Identities=28% Similarity=0.407 Sum_probs=183.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC----CCCccceEEEEcCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD----EFVPERTAAYISQHD-NHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1106)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|++ .++.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999998865 223468899999995 5677
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.-||.|.++|+..+.+... ++...+++.+++.+||.+.++..+.+
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCCccc-
Confidence 8899999999998776421 12345788899999999999988866
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.. .++.++|.++|+...+.+++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999865 445667778999999999999999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-39 Score=368.42 Aligned_cols=218 Identities=27% Similarity=0.374 Sum_probs=187.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999998 9999999998865443 4779999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+.++.. ..+....++++++.+||++..|+.+..
T Consensus 104 ~eNi~~~l~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------------------------------AAEITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 99999986543210 011223567889999999999888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886643 55667789999999999999999999999
Q ss_pred EEEcCHHHHHHHHHhcCCCCCCCCChhHHH
Q 001291 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 404 v~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1106)
+..|+++++. ..|....+|+|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999999884 345544455554
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=366.16 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=185.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++..++ +++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI--TSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEECC
Confidence 67788876652 134699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.++|.+||+||+.|+...+ .....+.+..++++++.++|.++.++.+ .+|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999986433 2334455667899999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||++ ++.+.||++++|+ +|+++..|++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999987 6889999999997 5799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 220 ~~ 221 (356)
T PRK11650 220 VE 221 (356)
T ss_pred HH
Confidence 53
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=347.20 Aligned_cols=214 Identities=25% Similarity=0.355 Sum_probs=178.9
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 4667776653 34699999999999999999999999999999999998663 48999999987532
Q ss_pred ------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 925 ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 925 ------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
..+++.+||++|++.+++.+||.||+.+....+. ....+...+.+.++++.+++.+..++.+ .+|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 2245679999999988888999999988643221 1233344566888999999987766653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 47788999999985 78999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 218 ~g~~~ 222 (235)
T cd03261 218 EGTPE 222 (235)
T ss_pred ecCHH
Confidence 88753
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=364.53 Aligned_cols=208 Identities=20% Similarity=0.305 Sum_probs=182.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1106)
.+.+|+|+|++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 356999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+++++||+||+.|+.+..+.. ..+...++.++++.+||+...++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWP----------------------------------EQERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhcCCchhhhCCh
Confidence 999999999999987654321 0112235678899999998888887
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+.+|+.++|+..++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~-~~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT-LQKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999987543 34566778999999999999999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 001291 397 LLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1106)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=316.49 Aligned_cols=201 Identities=25% Similarity=0.394 Sum_probs=175.6
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
.+++.|.+||++||+||||||||||||+|+|+..|. +|+|.+||.+.+...| +|-+++++|+.++|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 478899999999999999999999999999999998 9999999999876655 578999999999999999999999
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
++..- +-+ +. ++.++.++.++..+||..+.++..+. |||||
T Consensus 94 LGl~P---~Lk------L~-------------------------a~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLSP---GLK------LN-------------------------AEQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCCc---ccc------cC-------------------------HHHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 87531 110 11 11234578889999999999999887 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
||||++||+|+++.+||+||||+|+||+.-+.++...+.+++...+.|++ .++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tll-mVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLL-MVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEE-EEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999999999999998776555555 46666788999999999999999999999
Q ss_pred HHHHH
Q 001291 409 RELVL 413 (1106)
Q Consensus 409 ~~~~~ 413 (1106)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=364.52 Aligned_cols=215 Identities=26% Similarity=0.364 Sum_probs=186.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++|+++.++ +..+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ--TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 367888887653 34699999999999999999999999999999999998763 589999999876
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ .....+.+..++++++.++|.++.+..+ .+||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 43 223567999999999999999999999986543 2334556678999999999998888764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||++ ++...||++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999997 68889999999985 79999998
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
+.
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 65
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=363.88 Aligned_cols=215 Identities=24% Similarity=0.379 Sum_probs=187.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +..+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 477888887663 34699999999999999999999999999999999998764 589999999876
Q ss_pred Chh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
... ..+|.+|||+|++.++|.+||+||+.|+...+. ....+.+++++++++.++|.++.++.. .+||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 234679999999999999999999999865432 334556678899999999998877763 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999997 68889999999985 79999998
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 65
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=356.79 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=179.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|.++..+... .+....++.+++.+||.+.+++.++.
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999998765543210 01123456789999999999998865
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|...++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998753 3 5667778899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=363.40 Aligned_cols=215 Identities=25% Similarity=0.330 Sum_probs=186.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeE--EEEEEcCc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT--GDIRISGY 920 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~--G~i~i~g~ 920 (1106)
.+.++|++++++ +..+|+|+||+|++||+++|+|||||||||||++|+|..++ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 477888887763 24699999999999999999999999999999999998764 46 99999998
Q ss_pred cCCh-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 921 PKKQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 921 ~~~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
+... ...++.+|||+|++.++|.+||+||+.|+...+ .....+.+..++++++.++|.++.++.+ .+||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 123567999999999999999999999986443 2334555667899999999998888764 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999997 57889999999985 79999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99865
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=359.63 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=185.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.++|++..++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3588899887763 35699999999999999999999999999999999998764 58999999987
Q ss_pred CCh--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 922 ~~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
... ...++.+||++|++.+++.+|+.||+.|.+..+. ....+..+.++++++.++|.+..++.+ .+||+|
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999899999999987654432 223334456788999999998877765 369999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++||+||+.+|++|||||||+|||+.++..++++|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999997 67889999999985 7999999
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
++.
T Consensus 255 ~~~ 257 (340)
T PRK13536 255 RPH 257 (340)
T ss_pred CHH
Confidence 764
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=394.13 Aligned_cols=216 Identities=23% Similarity=0.356 Sum_probs=185.0
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|+++.++. +++.+|+|+||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 36888898876631 235699999999999999999999999999999999998764 58999999988
Q ss_pred CCh--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 922 ~~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.++.++++++.++|.+..++.+ .+||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 643 2345679999999999999999999998765542 223344567899999999998887764 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||||+||+||+.+|+||||||||+|||+.+++.++++|++++ +|+|||++||+++ ++...|||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999985 6999999999997 57778999999985 7899988
Q ss_pred cC
Q 001291 1080 PL 1081 (1106)
Q Consensus 1080 ~~ 1081 (1106)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 64
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=361.31 Aligned_cols=210 Identities=25% Similarity=0.379 Sum_probs=180.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999999998 9999999998865433 3679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+....... . ...+....++.+++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~------------------------~~~~~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------P------------------------NAAAIKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------C------------------------CHHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999998653210000 0 0011233567889999999888888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+ ..+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998765 3355677789999999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999885
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=313.51 Aligned_cols=213 Identities=26% Similarity=0.330 Sum_probs=181.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+..++|+|+|..- =-..+++|++||++||+||||||||||+++|+|...+ .+|.|+|+|.+..
T Consensus 2 l~L~~V~~~y~~~---------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t 64 (231)
T COG3840 2 LALDDVRFSYGHL---------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHT 64 (231)
T ss_pred ccccceEEeeCcc---------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecC
Confidence 3456777776532 1256789999999999999999999999999998774 4899999999875
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ...|-++.++|+..++..+||.+|+.++....+ .-....++.++.++..+||..+.+++. .+|||||||
T Consensus 65 ~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L---kL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQ 136 (231)
T COG3840 65 ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL---KLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQ 136 (231)
T ss_pred cCCcccCChhhhhhccccchhhhhhhhhcccCCccc---ccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHH
Confidence 43 345668999999999999999999988753221 223456677999999999999988874 369999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++|||+|+++-+||+||||+|+|||.-+..+..++.++++ ++.|+++|||+|+ |....+|+++++.+ |++.+.|+.
T Consensus 137 RvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 137 RVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999999999999999999999999999999999975 5899999999998 78999999999986 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 215 ~~ 216 (231)
T COG3840 215 QE 216 (231)
T ss_pred HH
Confidence 53
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=376.71 Aligned_cols=216 Identities=28% Similarity=0.427 Sum_probs=178.6
Q ss_pred CCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcC
Q 001291 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919 (1106)
Q Consensus 840 ~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g 919 (1106)
-+..++|+||+|.|+. ++..+|+|+|++|+|||.+||+|+||||||||+|+|+|..++ ..|.|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p--~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP--QQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECC
Confidence 3457999999999863 223699999999999999999999999999999999998774 589999999
Q ss_pred ccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccC
Q 001291 920 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVG 989 (1106)
Q Consensus 920 ~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~ 989 (1106)
+++.+ ..+|+.+|||+|++.++ .-|++||+.++. ++.+ .+.+.+++...+..+.. +..++
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gSI~eNi~l~~-----p~~~----~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLF-SGSIRENIALGN-----PEAT----DEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhh-cCcHHHHHhcCC-----CCCC----HHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99754 56788999999999876 479999998763 2222 22345555555554432 33344
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 990 ~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
..| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|.+.. .|+|+|+++|+++ ..+.||+|++|
T Consensus 605 E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 434 4699999999999999999999999999999999999999999999985 5899999999986 57899999999
Q ss_pred ecCCEEEEEecCCC
Q 001291 1070 KRGGREVYVGPLGH 1083 (1106)
Q Consensus 1070 ~~gG~~~~~G~~~~ 1083 (1106)
+ +|+++..|+..+
T Consensus 681 ~-~Gkiv~~gs~~e 693 (709)
T COG2274 681 D-QGKIVEQGSHEE 693 (709)
T ss_pred c-CCceeccCCHHH
Confidence 7 579999998543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=315.47 Aligned_cols=201 Identities=26% Similarity=0.395 Sum_probs=179.1
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDN 236 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~ 236 (1106)
....+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++.... .+|+||+|+|+..
T Consensus 13 ~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~r 89 (223)
T COG2884 13 GGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFR 89 (223)
T ss_pred CCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecc
Confidence 3356999999999999999999999999999999999999998 999999999986543 2589999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
++++.||.||++|+.+..|.. ..+.+.++.++|+..||.+.++...
T Consensus 90 LL~~~tvyeNVA~pL~v~G~~----------------------------------~~~i~~rV~~~L~~VgL~~k~~~lP 135 (223)
T COG2884 90 LLPDRTVYENVALPLRVIGKP----------------------------------PREIRRRVSEVLDLVGLKHKARALP 135 (223)
T ss_pred ccccchHhhhhhhhhhccCCC----------------------------------HHHHHHHHHHHHHHhccchhhhcCc
Confidence 999999999999998876642 1234567888999999999998776
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
-. |||||||||+||||++.+|++|+-||||-.||+..+.+|++++.++.+ .+|+|++.+|+..-+..+-.+++
T Consensus 136 ~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl 208 (223)
T COG2884 136 SQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVL 208 (223)
T ss_pred cc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEE
Confidence 54 999999999999999999999999999999999999999999998754 46777788999998888999999
Q ss_pred EecCCeEEEEc
Q 001291 397 LLSDGQIVYQG 407 (1106)
Q Consensus 397 lL~~G~iv~~G 407 (1106)
.|++|+++...
T Consensus 209 ~l~~Grl~~d~ 219 (223)
T COG2884 209 ALEDGRLVRDE 219 (223)
T ss_pred EEeCCEEEecc
Confidence 99999998754
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=339.61 Aligned_cols=200 Identities=28% Similarity=0.404 Sum_probs=171.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
+++|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... .++.++|++|++.+++..|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 4699999999999999999999999999999999998653 58999999987642 3467999999998888899999
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
|+.+....+. ...+...+.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9987654331 223334566889999999987766653 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEecC
Q 001291 1029 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPL 1081 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~~ 1081 (1106)
.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++ .|++++.+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999987 47788999999985 4899988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=339.56 Aligned_cols=210 Identities=29% Similarity=0.409 Sum_probs=174.7
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP--DSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcCc
Confidence 4567766553 24699999999999999999999999999999999997653 58999999987643
Q ss_pred h-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 925 ~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
. ..++.++|++|++.+++.+|++||+.+..... ....+..++.++++++.+++.+..+..+ .+||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23456999999988888899999998764322 1223334456789999999987766653 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
++|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999999999999999999876 4899999999987 47788999999985 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=339.94 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=173.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. +.+.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 467788877631 123699999999999999999999999999999999998653 5899999998753
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. .+++.++|++|++.+++.+|+.||+.+....+. ...+..++.++++++.+++.+..+..+ .+||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988888999999988654321 223334556889999999988776653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.+.||++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999987 467789999999864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=356.74 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=175.9
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~t 945 (1106)
++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999998763 58999999987643 234567999999999999999
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
|+||+.+.+.++. ......++.++++++.++|.+..++.+ .+|||||||||+||+||+.+|++|||||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999988765432 223344556889999999988777764 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 209 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTPE 209 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999878999999999997 57788999999985 7999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=359.82 Aligned_cols=217 Identities=26% Similarity=0.384 Sum_probs=184.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56778876653 34699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ..++.+|||+|++.+++.+||.||+.|+...+.. .....++.++.+.++++.++|.++.++.+ .+||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987543211 12334455667899999999988877764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|+|++|||++ ++...||++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999997 58889999999985 79999998
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 65
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=341.39 Aligned_cols=207 Identities=30% Similarity=0.397 Sum_probs=175.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 36999999999999999999999999999999999999998 999999998875432 245799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.++...... ... .+....++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTR---------LSE------------------------EEIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccC---------CCH------------------------HHHHHHHHHHHHHcCCchhhcCChhh
Confidence 999999999987532110 000 01123456789999998888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.++||+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKE-LGLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999987643 2456666788889999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=359.13 Aligned_cols=205 Identities=25% Similarity=0.299 Sum_probs=178.3
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cc----cceEEEEccCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TF----ARISGYCEQNDI 939 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~g~v~q~~~ 939 (1106)
+++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... .. ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p--~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP--TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC--CceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456799999999999999999999999999999999998764 589999999886532 22 567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 940 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
+++.+||+||+.|+.... ....++..+++.++++.++|.+..+..+ .+|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2334556677899999999988777764 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
||||++||+.++..+++.++++.++ |+|||++|||++ ++.+.||++++|++ |+++..|++.+
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~e 216 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPDE 216 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHHH
Confidence 9999999999999999999998754 899999999997 57889999999975 79999997553
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=361.11 Aligned_cols=206 Identities=26% Similarity=0.383 Sum_probs=179.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999998765433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. . .+....++.+++.+||++..++.+++
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------K------------------------EEINQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999986543210 0 01123467789999999888888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..+||+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876533 45666788999999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=326.23 Aligned_cols=205 Identities=26% Similarity=0.329 Sum_probs=177.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC----ccceEEEEcCCC--CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----PERTAAYISQHD--NHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1106)
.++|+|||+++.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 37999999999999999999999999999999999999998 999999998775542 346799999996 578
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc-ccccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CADTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 317 (1106)
|..||++.|.-+.+..+.+. ...++.++++.+||+. .++...-
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l~R~P~ 140 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFLDRRPH 140 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHHhcCch
Confidence 99999999987765433211 1123677899999975 5555554
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
.|||||||||+|||||+.+|++|++|||||+||++...+|++.|.++.+ ..+.+++.++|+..-+..+||||++
T Consensus 141 -----eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~-~~~lt~l~IsHdl~~v~~~cdRi~V 214 (252)
T COG1124 141 -----ELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKK-ERGLTYLFISHDLALVEHMCDRIAV 214 (252)
T ss_pred -----hcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHH-hcCceEEEEeCcHHHHHHHhhheee
Confidence 3999999999999999999999999999999999999999999998865 4567788899999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=362.44 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=180.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|++.+||++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35999999999999999999999999999999999999998 9999999998865433 4789999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.||+.|+.+..+.. ..+....++.+++.+||.+..++.+..
T Consensus 109 ~eNi~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------------------------------KAEIASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999986543210 011223567889999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||+++||..++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999998876544 46667789999999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999885
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=327.78 Aligned_cols=217 Identities=27% Similarity=0.356 Sum_probs=176.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+..+|++..++... ....+|+||||+|.+||++||+|+||||||||.++|+|...+ ..|+|.++|.+..
T Consensus 4 l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~ 72 (252)
T COG1124 4 LSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLA 72 (252)
T ss_pred EEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccC
Confidence 56677765554321 112599999999999999999999999999999999998764 5899999997754
Q ss_pred hh----cccceEEEEccCCCC--CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCC
Q 001291 924 QE----TFARISGYCEQNDIH--SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~L 996 (1106)
.. .+++.+.+|+|++.- -|..||++.|.=.... ....+ .++++.++++.+||.+ ..++. +.+|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~--~~~~i~~~L~~VgL~~~~l~R~-----P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSK--SQQRIAELLDQVGLPPSFLDRR-----PHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccH--HHHHHHHHHHHcCCCHHHHhcC-----chhc
Confidence 32 467789999999874 5888999887544322 12222 2333899999999975 33433 4579
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|||||||+||||||+.+|++|+||||||+||+..++.|++++.++.++ |-|+|+||||++. +...|||+++|++ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999754 7899999999984 7778999999986 799
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
++.++.+.
T Consensus 221 vE~~~~~~ 228 (252)
T COG1124 221 VEIGPTEE 228 (252)
T ss_pred EEeechhh
Confidence 99998764
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-38 Score=360.07 Aligned_cols=215 Identities=23% Similarity=0.328 Sum_probs=186.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +..+|+|+||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478888887763 34699999999999999999999999999999999998764 589999999876
Q ss_pred Chh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
... ..+|.+||++|++.++|.+||+||+.|+...+ .....+.++.++++++.++|.++.++.+ .+||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999986433 1234445567899999999998888764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998764 999999999997 68889999999985 79999998
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
+.
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 65
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=320.03 Aligned_cols=208 Identities=26% Similarity=0.351 Sum_probs=182.1
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhc----ccceEEEEccCCCCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET----FARISGYCEQNDIHS 941 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~g~v~q~~~~~ 941 (1106)
+++++++++|||.|++||++||+|||||||||.+.++.|...+ .+|.|.++|.++.... .+..+||+||++..+
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567899999999999999999999999999999999998764 4899999999876422 233589999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
..+||+||+..-...+.. +....+++..++++|+.+++.++++.+. ..||||||+|+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999876555431 2233456667889999999999998763 3599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|++|+||-+-..|+++++.++++|..|++|-|+.. +....|||.+++.+ |++...|++.+
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~e 225 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPEE 225 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHHH
Confidence 99999999999999999999999999999999987 68899999999985 79999998754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=371.37 Aligned_cols=214 Identities=23% Similarity=0.413 Sum_probs=175.3
Q ss_pred CCCccccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCC
Q 001291 158 LPSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQH 234 (1106)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1106)
||.+ ++.+||+|+|++|+|||.|||+|||||||||+.++|..+++|+ +|+|++||+|+.+.++ ++.||+|.|+
T Consensus 475 YP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QE 550 (716)
T KOG0058|consen 475 YPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQE 550 (716)
T ss_pred cCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeecc
Confidence 3444 4578999999999999999999999999999999999999998 9999999999988776 5889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
|.+|. -||+|||.|+... .+.+..+.++.. .+.-=-+.++++..||
T Consensus 551 PvLFs-~sI~eNI~YG~~~-------------------------~t~e~i~~AAk~--------ANah~FI~~~p~gY~T 596 (716)
T KOG0058|consen 551 PVLFS-GSIRENIAYGLDN-------------------------ATDEEIEAAAKM--------ANAHEFITNFPDGYNT 596 (716)
T ss_pred ceeec-ccHHHHHhcCCCC-------------------------CCHHHHHHHHHH--------hChHHHHHhCcccccc
Confidence 98886 5999999998641 111111111111 1111124578999999
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.||+ .+..||||||||++|||||+.+|.||||||.||+||+.+...+.+.|.++.+ ++|+++ |.|. -.+.+.+|+
T Consensus 597 ~VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAHR-LSTV~~Ad~ 671 (716)
T KOG0058|consen 597 VVGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAHR-LSTVRHADQ 671 (716)
T ss_pred ccCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eehh-hhHhhhccE
Confidence 9997 3445999999999999999999999999999999999999999999987643 455544 5554 457789999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|+++++|++++.|+++|+++
T Consensus 672 Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 672 IVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEEcCCeEEecccHHHHhh
Confidence 99999999999999999975
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-38 Score=337.70 Aligned_cols=212 Identities=28% Similarity=0.384 Sum_probs=177.9
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~ 66 (220)
T cd03265 2 EVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVR 66 (220)
T ss_pred EEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCc
Confidence 4667776653 34699999999999999999999999999999999998653 58999999976532
Q ss_pred --hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 925 --~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..+..+ .+|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 138 (220)
T cd03265 67 EPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRR 138 (220)
T ss_pred ChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHH
Confidence 2234579999999988888999999988654331 223334556889999999987766654 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++||+||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999999999999999999999999999876 899999999997 57788999999985 788888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.06 Aligned_cols=221 Identities=28% Similarity=0.378 Sum_probs=190.2
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1106)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|.+++...+. .-++--+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4567999999999999999999999999999999999999998 99999999999887664 4578899999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
++|||.||+..++..+.. +....... ....+..+...++..+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~-------------------~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRP-------------------RARKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccc-------------------cchhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999998765421 00000000 00012233456778899999999999999987
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+ .++.+|+.|.|+..-++.+||||+||
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEEEec
Confidence 999999999999999999999999999999999999999999999864 45688888999999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999864
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=356.29 Aligned_cols=206 Identities=26% Similarity=0.379 Sum_probs=178.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999998 9999999998765322 35799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+....+.. . .+....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------K------------------------AEIKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999976543210 0 01123467789999999888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRE-LGLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999987653 3456667888999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=357.06 Aligned_cols=218 Identities=23% Similarity=0.296 Sum_probs=182.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5678888776411 1135799999999999999999999999999999999998763 5899999998764
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ..++.+||++|++.+++.+||.||+.+....+ ....+..++.++++++.++|.+..+..+ .+||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 21 23567999999999888899999998875433 1233444567889999999988777653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999997 57788999999985 7899
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 221 ~~g~~~ 226 (343)
T PRK11153 221 EQGTVS 226 (343)
T ss_pred EEcCHH
Confidence 988754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=334.00 Aligned_cols=209 Identities=26% Similarity=0.426 Sum_probs=175.4
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP--DSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCCchhH
Confidence 4667776553 34699999999999999999999999999999999997653 58999999987643
Q ss_pred hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001291 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1106)
Q Consensus 925 ~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl 1004 (1106)
..++.++|++|++.+++.+|++||+.+....+. ......++.+.++++.+++.+..+..+ .+||+|||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 335679999999988888999999987654331 223334556889999999987666553 46999999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1005 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1005 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
+||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999987 46778999999985 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.90 Aligned_cols=215 Identities=27% Similarity=0.365 Sum_probs=181.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +..+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 467888887663 34699999999999999999999999999999999997653 489999999875
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++.+||++|++.+++.+|++||+.+.+..+. ...+.....++++++.+++.+..+..+ .+|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2235679999999988888999999986543321 223334456788999999988777664 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||++||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999997 57788999999985 78999887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 219 ~~ 220 (303)
T TIGR01288 219 PH 220 (303)
T ss_pred HH
Confidence 54
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=353.54 Aligned_cols=206 Identities=27% Similarity=0.381 Sum_probs=178.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875421 1457999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|.+++.+... .+....++.+++.+||++..++.++.
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998765543200 01123467789999999988888876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ . +++|+.++|...++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 3 4566778899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=334.74 Aligned_cols=210 Identities=26% Similarity=0.393 Sum_probs=175.4
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++++|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~v~~~g~~~~~ 66 (213)
T cd03301 2 ELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP--TSGRIYIGGRDVTD 66 (213)
T ss_pred EEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCc
Confidence 4677776653 24699999999999999999999999999999999998653 58999999987643
Q ss_pred h-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 925 ~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..+ .+||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 138 (213)
T cd03301 67 LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQR 138 (213)
T ss_pred CCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHH
Confidence 2 12356999999998888899999998764332 1223344556788999999987777654 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998764 899999999987 57788999999985 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=360.29 Aligned_cols=218 Identities=27% Similarity=0.362 Sum_probs=184.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p--~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP--TAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEcC
Confidence 67788877653 35799999999999999999999999999999999998763 5899999998764
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.+||++|++.+++.+||+||+.++...+.. .....+..++.++++++.+++.++.++.+ .+||+|
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 3 34567799999999888889999999886432211 11112344567899999999998887764 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||+.|||||+++|+||||||||+|||+.++..++++|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G 221 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999877999999999998 57789999999985 7899999
Q ss_pred cCCC
Q 001291 1080 PLGH 1083 (1106)
Q Consensus 1080 ~~~~ 1083 (1106)
++.+
T Consensus 222 ~~~e 225 (402)
T PRK09536 222 PPAD 225 (402)
T ss_pred CHHH
Confidence 8653
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-38 Score=385.66 Aligned_cols=218 Identities=30% Similarity=0.424 Sum_probs=179.7
Q ss_pred CCCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEc
Q 001291 839 FEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918 (1106)
Q Consensus 839 ~~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~ 918 (1106)
.....++|+||+|+||..+ +..+|+|+||.|++|+.+||+|||||||||++.+|.+... |.+|+|.||
T Consensus 346 ~~~g~ief~nV~FsYPsRp----------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd--P~~G~V~id 413 (1228)
T KOG0055|consen 346 SIKGEIEFRNVCFSYPSRP----------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD--PTSGEVLID 413 (1228)
T ss_pred ccccceEEEEEEecCCCCC----------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCceEEEc
Confidence 3445799999999998753 4579999999999999999999999999999999999876 468999999
Q ss_pred CccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-------ccccccc
Q 001291 919 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-------PLRQSLV 988 (1106)
Q Consensus 919 g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-------~~~~~~~ 988 (1106)
|.+++. ..++.++|.|.|+|.++ ..|++||+.|+. ++. .++.++++.+..+.. +-.+..+
T Consensus 414 G~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~-----~da----t~~~i~~a~k~ana~~fi~~lp~g~~T~v 483 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGK-----PDA----TREEIEEAAKAANAHDFILKLPDGYDTLV 483 (1228)
T ss_pred CccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCC-----Ccc----cHHHHHHHHHHccHHHHHHhhHHhhcccc
Confidence 998754 45677899999999765 589999999873 121 122344555444433 3345556
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE
Q 001291 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1106)
Q Consensus 989 ~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~ 1068 (1106)
|..|+ +||||||||++|||||+++|+|||||||||+||+++++.|+++|++.. .|+|.|+|+|++|. + +.+|++++
T Consensus 484 ge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLSt-I-rnaD~I~v 559 (1228)
T KOG0055|consen 484 GERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLST-I-RNADKIAV 559 (1228)
T ss_pred cCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehhh-h-hccCEEEE
Confidence 66665 499999999999999999999999999999999999999999998864 69999999999983 4 56999999
Q ss_pred EecCCEEEEEecCCC
Q 001291 1069 MKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1069 l~~gG~~~~~G~~~~ 1083 (1106)
|++ |++++.|...+
T Consensus 560 ~~~-G~IvE~G~h~E 573 (1228)
T KOG0055|consen 560 MEE-GKIVEQGTHDE 573 (1228)
T ss_pred EEC-CEEEEecCHHH
Confidence 986 79999998543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=322.63 Aligned_cols=207 Identities=25% Similarity=0.382 Sum_probs=175.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1106)
+.++|++||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|.+++...+. +-++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 367999999999999999999999999999999999999987 99999999999877653 56999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCcccccccccC
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (1106)
.|||+|||..++..... .. . .....+.+.+.| .|..-.+..-|.
T Consensus 92 ~LTVeENL~~g~~~~~~-~~----------~------------------------~~~~~e~v~~lFP~Lker~~~~aG~ 136 (237)
T COG0410 92 RLTVEENLLLGAYARRD-KE----------A------------------------QERDLEEVYELFPRLKERRNQRAGT 136 (237)
T ss_pred hCcHHHHHhhhhhcccc-cc----------c------------------------ccccHHHHHHHChhHHHHhcCcccC
Confidence 99999999988643310 00 0 000023344444 355555666665
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||+|.++|||||+++|++|+|||||.||-|.-..+|.+.++++.+. ++.+|+.+.|....+.+++|+.++|
T Consensus 137 -----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 137 -----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 4577888999999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
.+|+|++.|+.+++..
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999998864
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=359.23 Aligned_cols=214 Identities=26% Similarity=0.360 Sum_probs=183.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 67788877653 34699999999999999999999999999999999998763 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+||++|++.+++.+||+||+.|+...+. ...++.++.++++++.++|.+..++.+ .+|||||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~Q 140 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 31 234679999999999999999999998764331 233445567899999999988777664 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~ 218 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998764 899999999997 57889999999985 799999976
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 219 ~ 219 (369)
T PRK11000 219 L 219 (369)
T ss_pred H
Confidence 5
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=357.07 Aligned_cols=216 Identities=24% Similarity=0.359 Sum_probs=186.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++|++..++ +..+|+|+||+|++||+++|+|||||||||||++|+|..++ ..|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 478888887653 34699999999999999999999999999999999998764 589999999876
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...+|.+||++|++.++|.+||.||+.|+...+ .....+.++++.++++.++|.++.+..+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234578999999999999999999999976433 2234555667899999999998877764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||++||+.++..+.+.|+++.+ .|.|+|++|||++ ++...+|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999997 68899999999985 79999998
Q ss_pred CCC
Q 001291 1081 LGH 1083 (1106)
Q Consensus 1081 ~~~ 1083 (1106)
+.+
T Consensus 234 ~~~ 236 (377)
T PRK11607 234 PEE 236 (377)
T ss_pred HHH
Confidence 653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=336.19 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=177.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. ....++|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 4567777766421 0112699999999999999999999999999999999998653 4899999998764
Q ss_pred h--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
. ..+++.+||++|++.+++.+|+.||+.+....+ ........+.++++++.+++.+..++.+ .+||+|||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998888899999998765432 1223344567889999999987777654 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999987 57788999999985 6777653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=338.86 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=177.5
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ +.++|+|+||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP--TSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEECCC
Confidence 4567776553 34699999999999999999999999999999999998653 58999999987643
Q ss_pred h---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCC-------CChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001291 925 E---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE-------VNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1106)
Q Consensus 925 ~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~ 993 (1106)
. . .++.++|++|++.+++.+||+||+.+......... .........+.++++.+++.+..+..+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 1 1 23468999999998888999999988654321110 012334456889999999987766653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 469999999999999999999999999999999999999999999998877999999999997 57788999999985 7
Q ss_pred EEEEEecC
Q 001291 1074 REVYVGPL 1081 (1106)
Q Consensus 1074 ~~~~~G~~ 1081 (1106)
++++.|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 89888764
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=347.74 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=179.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.+++|++.++... ...+++|+||||+|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67888888764210 0124699999999999999999999999999999999998763 5899999998764
Q ss_pred h-----hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCC
Q 001291 924 Q-----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNG 995 (1106)
Q Consensus 924 ~-----~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~g~~~ 995 (1106)
. ...++.+||++|++. .....||+||+.|+.... ....++..+.++++++.++|. +..+..+ ..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----cc
Confidence 3 134567999999874 234579999998865332 234455556789999999996 5555543 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||++ ++.+.||++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999987 46788999999985 79
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13637 223 CELQGTPR 230 (287)
T ss_pred EEEECCHH
Confidence 99988754
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=351.29 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=178.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875432 2467999999998999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|.....+... .+....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChhh----
Confidence 9999998654432100 00112356678999999989988876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++.++++.|+++.. . +++|+.++|...++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998854 3 5567778899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
++++|+++++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998864
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=337.91 Aligned_cols=218 Identities=28% Similarity=0.389 Sum_probs=179.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 66 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP--DSGTILFGGEDA 66 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367788887663 24699999999999999999999999999999999998653 589999999875
Q ss_pred Chh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
... ..++.++|++|++.+++..||.||+.++...+... ........+.++++++.+++.+..+..+ .+||+||
T Consensus 67 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 141 (239)
T cd03296 67 TDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQ 141 (239)
T ss_pred CcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHH
Confidence 432 12356999999998888899999998764332110 0122233456788999999987766653 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 142 ~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 219 (239)
T cd03296 142 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVG 219 (239)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEec
Confidence 99999999999999999999999999999999999999999765 899999999987 47788999999975 7899988
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
+..
T Consensus 220 ~~~ 222 (239)
T cd03296 220 TPD 222 (239)
T ss_pred CHH
Confidence 754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=336.86 Aligned_cols=214 Identities=24% Similarity=0.287 Sum_probs=175.4
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC-----CCceeEEEEEEcC
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYITGDIRISG 919 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~-----~~~~~~G~i~i~g 919 (1106)
.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|.. + +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 4567766553 246999999999999999999999999999999999976 4 4589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ..+++.+||++|++.++ .+||+||+.+....+. .......++.++++++.+++.+..+.... +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87532 22356799999998877 7899999987654321 11122234567899999999876555420 24
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||||||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ +|||++||+++ ++.+.||++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 69999999999999999999999999999999999999999999999876 99999999987 47788999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 218 i~~~g~~~ 225 (227)
T cd03260 218 LVEFGPTE 225 (227)
T ss_pred EEEecCcc
Confidence 99988753
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=337.43 Aligned_cols=213 Identities=26% Similarity=0.356 Sum_probs=178.0
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4667776653 34699999999999999999999999999999999998653 57999999987532
Q ss_pred h---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 925 E---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 925 ~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
. . .++.++|++|++.+++.+|++||+.+....+. .........++++++.+++.+..+..+ ..||+||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23468999999988888999999987643321 222334456788999999987666653 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999998877999999999997 57889999999985 78998887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 217 ~~ 218 (232)
T cd03218 217 PE 218 (232)
T ss_pred HH
Confidence 64
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=332.93 Aligned_cols=192 Identities=29% Similarity=0.387 Sum_probs=162.5
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCC-CCCCCCHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI-HSPFVTVY 947 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~-~~~~~tv~ 947 (1106)
+.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+......++.+||++|++. .....|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE--SSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 4699999999999999999999999999999999998653 58999999987644344567999999974 23457999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
||+.+..... . . ....+.++++.+++.+..+..+ .+||+|||||++|||||+.+|++|||||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754321 1 1 1245789999999988777664 4699999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 1028 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 1028 ~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999997 46778999999985 5653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=331.96 Aligned_cols=206 Identities=29% Similarity=0.397 Sum_probs=173.3
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
+++|+++.++ ++++|+|+||++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP--DSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCCcccc
Confidence 4667776553 24699999999999999999999999999999999998653 58999999987643
Q ss_pred -hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 925 -~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
...++.++|++|++.+++..|+.||+.+....+. . .+..++++++.+++.+..+..+ .+||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2334579999999988888999999987653321 1 1345788999999987776653 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
++|||||+.+|++|+|||||+|||+.+++.+++.|+++.++|+|||++|||++ ++.+.||++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999987 46778999999985 6887754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=334.74 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=170.5
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++.. ...+.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~~ 70 (218)
T cd03255 2 ELKNLSKTYGGG---------GEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP--TSGEVRVDGTDISK 70 (218)
T ss_pred eEeeeEEEecCC---------CcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC--CceeEEECCEehhh
Confidence 467777665310 0014699999999999999999999999999999999998653 58999999987542
Q ss_pred hc-------ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 925 ET-------FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 925 ~~-------~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. .++.++|++|++.+++.+|++||+.+....+. ......++.++++++.+++.+..+..+ .+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (218)
T cd03255 71 LSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELS 142 (218)
T ss_pred cchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcC
Confidence 11 23579999999988888999999988754331 222334456889999999987766653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.||++++|++|
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 143 GGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 9999999999999999999999999999999999999999999976 5899999999987 35 489999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=322.22 Aligned_cols=224 Identities=23% Similarity=0.340 Sum_probs=198.0
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
.+++.+++||||.++||+++|++|+|||||||++++|.|...+ .+|.|.++|.+.++.. +.+|||.|.+.-+++.+|
T Consensus 12 Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~--~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 12 FGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP--TEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred cCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCc--cCceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 4667899999999999999999999999999999999998774 5899999999987643 456899999999999999
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
|.|.+.|.+.+. .++.++.+..++.+|+.+++.....+++ .+||-|++|++.+-.+++++|++++||||+||
T Consensus 89 v~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 89 VEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred HHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 999999998876 4567778888999999999998888775 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCc------------hhHHHHHHH
Q 001291 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH------------SCHLISYFE 1093 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~------------~~~~~~yf~ 1093 (1106)
|||.+.+.+.+.+.+++++|.|||++||+++ .+.++||++++|++ |+.|..|++..- +..-.+-..
T Consensus 161 LDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~~ir~~~Gkk~~~ies~~s~eeL~ 238 (300)
T COG4152 161 LDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVEDIRRSFGKKRLVIESDLSLEELA 238 (300)
T ss_pred CChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHHHHHHhcCCceEEEeccCchHHHh
Confidence 9999999999999999999999999999998 68999999999985 788888986531 112234588
Q ss_pred hCCCCcccc
Q 001291 1094 VCPDAHFHI 1102 (1106)
Q Consensus 1094 ~~~g~~~~~ 1102 (1106)
.+|||-+..
T Consensus 239 ~ipgi~~~~ 247 (300)
T COG4152 239 NIPGILKIT 247 (300)
T ss_pred cCCCceeee
Confidence 999998754
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=348.46 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=182.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++++++.++ ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~--~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP--DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 56777776653 34699999999999999999999999999999999998663 5899999998764
Q ss_pred h--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
. ...++.+||++|++.+++.+|+.||+.|.+.++. ...++..+.++++++.++|.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2345679999999998899999999988765432 223344556889999999998877764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||++||+||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999997 58889999999985 799998886
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 217 ~~ 218 (301)
T TIGR03522 217 DE 218 (301)
T ss_pred HH
Confidence 53
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=325.52 Aligned_cols=209 Identities=27% Similarity=0.367 Sum_probs=181.3
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhc----ccceEEEEccCCCCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET----FARISGYCEQNDIHS 941 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~g~v~q~~~~~ 941 (1106)
.++..+++||||++++||++||+||||||||||+|+|+|..++ ..|.|.++|.++.... .+..++..+|...++
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 4678899999999999999999999999999999999998774 5899999999875422 234578889999999
Q ss_pred CCCCHHHHHHHhhhhcC--------CC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001291 942 PFVTVYESLFYSAWLRL--------PP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~--------~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~ 1012 (1106)
+.+||.||++.++..+. +. ....++..+++.++|+.++|.+.++.+.+ +||+||||||.|||||+.
T Consensus 92 ~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 92 PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALAT 166 (250)
T ss_pred CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhc
Confidence 99999999988754321 11 11234556778899999999999998864 599999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
+|++|+||||.+||.+.....+.+.|+++.+ .|.||++|.||++. ++.+||||++|+. |+++..|++.+
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~e 236 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPEE 236 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHHH
Confidence 9999999999999999999999999999987 47999999999995 8999999999985 79999999875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=337.20 Aligned_cols=217 Identities=25% Similarity=0.308 Sum_probs=179.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. .+..++|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4567777665310 0112699999999999999999999999999999999998763 5899999998764
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ..++.++|++|++.+++.+|+.||+.+....+. .........++++++.+++.+..+..+ .+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 21 224679999999988888999999987654331 223344556889999999987766653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
+|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998765 899999999987 47788999999975 7899
Q ss_pred EEecC
Q 001291 1077 YVGPL 1081 (1106)
Q Consensus 1077 ~~G~~ 1081 (1106)
+.|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88764
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=343.67 Aligned_cols=205 Identities=26% Similarity=0.312 Sum_probs=173.2
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---c----ccceEEEEccCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T----FARISGYCEQND 938 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~g~v~q~~ 938 (1106)
+++..+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.... . .++.+||++|++
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4556799999999999999999999999999999999998763 489999999875421 1 134699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001291 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018 (1106)
Q Consensus 939 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~ill 1018 (1106)
.+++.+|+.||+.+..... ........+.+.++++.++|.+..+..+ .+||+|||||++|||||+.+|+|||
T Consensus 112 ~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred ccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888899999998864332 1223334456789999999987777664 4699999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1019 MDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1019 LDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 184 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 246 (269)
T cd03294 184 MDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTPE 246 (269)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999998754 899999999987 47788999999975 7899988754
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=338.98 Aligned_cols=205 Identities=29% Similarity=0.341 Sum_probs=170.0
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh------hcccceEEEEccCCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETFARISGYCEQNDIHSP 942 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~g~v~q~~~~~~ 942 (1106)
+.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 4699999999999999999999999999999999998653 47999999987542 123467999999998888
Q ss_pred CCCHHHHHHHhhhhcC-----CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE
Q 001291 943 FVTVYESLFYSAWLRL-----PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~il 1017 (1106)
.+||+||+.+...... ..........+.+.++++.+++.+..+..+ .+||+|||||++|||||+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----ccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8999999987532110 001112233456788999999987666553 469999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1018 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 230 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPPA 230 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCHH
Confidence 999999999999999999999998764 899999999997 47779999999985 7899988754
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=350.33 Aligned_cols=217 Identities=26% Similarity=0.418 Sum_probs=183.1
Q ss_pred CCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcC
Q 001291 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG 919 (1106)
Q Consensus 840 ~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g 919 (1106)
.+..+..+|++|.++. ++++++|+||++++|+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 4556777899988763 33799999999999999999999999999999999998774 589999999
Q ss_pred ccCC---hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCC-----C
Q 001291 920 YPKK---QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL-----P 991 (1106)
Q Consensus 920 ~~~~---~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~-----~ 991 (1106)
.+.. ...++++++||+|++.+++ -|++||+.++. .+. .++.+.++++..++.++.+...|. .
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~----s~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDA----SDEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcC----CHHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8864 4568899999999998775 69999998763 112 234578889999988776653222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
|..+|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|++
T Consensus 453 ~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld~ 529 (559)
T COG4988 453 GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLDN 529 (559)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEecC
Confidence 4467999999999999999999999999999999999999999999999976 599999999985 5678999999985
Q ss_pred CCEEEEEecCCCc
Q 001291 1072 GGREVYVGPLGHH 1084 (1106)
Q Consensus 1072 gG~~~~~G~~~~~ 1084 (1106)
|++++.|...+.
T Consensus 530 -G~l~~~g~~~~L 541 (559)
T COG4988 530 -GRLVEQGTHEEL 541 (559)
T ss_pred -CceeccCCHHHH
Confidence 799999987643
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=343.27 Aligned_cols=216 Identities=25% Similarity=0.331 Sum_probs=179.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. +..+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 3678888877631 23599999999999999999999999999999999998653 589999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.+||++|++. ..+..||.||+.|+.... ....+..++.+.++++.++|.+..++.+ .+|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 43 223457999999873 345679999998864321 2333444566889999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+.||++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999987 46788999999975 789999
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|+..
T Consensus 220 g~~~ 223 (274)
T PRK13647 220 GDKS 223 (274)
T ss_pred CCHH
Confidence 8754
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=336.35 Aligned_cols=215 Identities=22% Similarity=0.335 Sum_probs=179.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 45777776653 2469999999999999999999999999999999999865 35899999998754
Q ss_pred h-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 924 Q-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 924 ~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
. ...++.++|++|++..++.+||.||+.+...... .......++.+.++++.+++.+..+..+ ..||+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 2 2335579999999988888999999987542111 1223344556789999999987766653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..++++|++++++|+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999998877999999999997 47778999999985 789999
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|+..
T Consensus 218 g~~~ 221 (240)
T PRK09493 218 GDPQ 221 (240)
T ss_pred CCHH
Confidence 8765
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=332.33 Aligned_cols=206 Identities=26% Similarity=0.347 Sum_probs=172.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP--SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 45677776652 124699999999999999999999999999999999998653 5899999998764
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. .+++.++|++|++.+++..|+.||+.+....+. ......++.++++++.+++.+..+..+ .+||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 235679999999988888999999988654321 223334567889999999987666553 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++...||++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999997 577789999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=347.24 Aligned_cols=220 Identities=24% Similarity=0.293 Sum_probs=179.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++... .....+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67888888874210 0123599999999999999999999999999999999998764 4799999876531
Q ss_pred ---------------------------hhcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHH
Q 001291 924 ---------------------------QETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975 (1106)
Q Consensus 924 ---------------------------~~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l 975 (1106)
....++.+||++|++. .+...||+||+.|+.... ....+..++++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 1224567999999863 344579999998875432 234445566789999
Q ss_pred HHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecC
Q 001291 976 ELVELK-PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1054 (1106)
Q Consensus 976 ~~~~l~-~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~ 1054 (1106)
+.++|. ++.+..+ .+||||||||++||+||+.+|++|||||||+|||+.++..+++.|+++.+.|+|||++|||
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 5666553 4699999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1055 PSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1055 ~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
++ .+.+.|||+++|++ |++++.|+..+
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~~~ 251 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDTYD 251 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 87 47789999999975 78999987653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=333.55 Aligned_cols=216 Identities=25% Similarity=0.339 Sum_probs=177.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. ....++|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i~ 74 (233)
T PRK11629 6 LQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMS 74 (233)
T ss_pred EEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcC
Confidence 7788888876421 0114699999999999999999999999999999999998653 5899999998764
Q ss_pred hhc------c-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 QET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~~------~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
... . ++.++|++|++.+++.+|++||+.+....+ ....+..++.++++++.+++.+..+..+ .+|
T Consensus 75 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 146 (233)
T PRK11629 75 KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SEL 146 (233)
T ss_pred cCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 311 2 256999999988888899999998864332 1223344567889999999987766653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++++ +|+|||++||+++. + +.+|++++|++ |++
T Consensus 147 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~-~~~~~~~~l~~-G~i 223 (233)
T PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-A-KRMSRQLEMRD-GRL 223 (233)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhhCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999875 58999999999863 4 45689999975 789
Q ss_pred EEEecC
Q 001291 1076 VYVGPL 1081 (1106)
Q Consensus 1076 ~~~G~~ 1081 (1106)
++.|++
T Consensus 224 ~~~~~~ 229 (233)
T PRK11629 224 TAELSL 229 (233)
T ss_pred EEEecc
Confidence 988875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=334.07 Aligned_cols=205 Identities=28% Similarity=0.385 Sum_probs=174.4
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNHIG 239 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1106)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999997 9999999998754321 357999999998899
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.+.....+.. ..+....++.+++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------------------------------KAEIEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999999875432210 000122456789999999888877654
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++... .+++|++++|+..++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999987543 34566667888889999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=344.22 Aligned_cols=218 Identities=24% Similarity=0.360 Sum_probs=178.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCC-C
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-N 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~ 236 (1106)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++ .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999998 99999999987531 1135799999985 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
.+...||+||+.|+....+.. ..+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------------------------------EEDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCChhhhhCC
Confidence 344679999999876433210 001123467789999997 567777
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+.. |||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++... .+++|++++|+.+++.++||+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 665 9999999999999999999999999999999999999999999987653 3556777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH---HHHhcCCCCCC
Q 001291 396 ILLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1106)
++|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 34444555443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=344.44 Aligned_cols=218 Identities=27% Similarity=0.399 Sum_probs=179.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-----ccceEEEEcCCCC-CC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN-HI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1106)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999853 44
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc--ccccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD--ICADTMV 316 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1106)
..+||+||+.|+....+.. .++....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccCCc
Confidence 5689999999875432210 011223467889999997 5677766
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
.. ||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++..+||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 54 9999999999999999999999999999999999999999999988653 35667778899999999999999
Q ss_pred EecCCeEEEEcCHHHHHH---HHHhcCCCCCC
Q 001291 397 LLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~f~~~G~~~p~ 425 (1106)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999998753 23345665543
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=337.69 Aligned_cols=212 Identities=27% Similarity=0.349 Sum_probs=177.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY--QHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 45677776553 24699999999999999999999999999999999998653 4899999998764
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
. ....+||++|++.+++..|+.||+.+....+ ........+.+.++++.+++.+..+..+ .+||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2245899999998888899999998764332 1223334456889999999987666553 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEecC
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPL 1081 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~~ 1081 (1106)
++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++...||++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999997 57788999999985 6899988754
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=345.55 Aligned_cols=219 Identities=25% Similarity=0.287 Sum_probs=179.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+... ....++|+||||+|++||++||+|+||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67889988874211 0124599999999999999999999999999999999998663 4899999998763
Q ss_pred h-------hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
. ..+++.+|||+|++. .+...||.||+.|+.... ....++.++.++++++.++|. ...+..+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 1 234567999999863 233479999998875322 223444456789999999996 5555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
+||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++.++ |.|||++|||++ ++.+.||++++|+ +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999999764 899999999997 5778899999997 57
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 223 ~i~~~g~~~ 231 (290)
T PRK13634 223 TVFLQGTPR 231 (290)
T ss_pred EEEEECCHH
Confidence 999998754
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-37 Score=342.58 Aligned_cols=224 Identities=28% Similarity=0.391 Sum_probs=182.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCC-CC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHD-NH 237 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d-~~ 237 (1106)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++... ..++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999998 99999999987521 1245799999985 24
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMV 316 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1106)
+...||.||+.|+....+.. ..+....+..+++.+||. ...++.+
T Consensus 97 l~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~ 142 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIP----------------------------------KEKAEKIAAEKLEMVGLADEFWEKSP 142 (288)
T ss_pred cccchHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhccCCc
Confidence 44579999999986543210 001123467789999996 4667666
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
.. ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|+
T Consensus 143 ~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 143 FE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred cc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 54 999999999999999999999999999999999999999999998754 3 4567778888999999999999
Q ss_pred EecCCeEEEEcCHHHHH---HHHHhcCCCCCCCCChhHHH
Q 001291 397 LLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~~~~ad~l 433 (1106)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999875 34556777776554444433
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=331.56 Aligned_cols=200 Identities=29% Similarity=0.440 Sum_probs=169.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999998 9999999988754322 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.++....+.. . .+....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------K------------------------AEIRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99999865432110 0 00112356788999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.++||+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999987643 345666788888999999999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=331.25 Aligned_cols=205 Identities=26% Similarity=0.369 Sum_probs=170.9
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ +++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP--TSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEccc
Confidence 4567776653 124699999999999999999999999999999999998653 58999999986532
Q ss_pred ------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 925 ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 925 ------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
...++.++|++|++.+++.+|+.||+.+....+. ...+..++.++++++.+++.+..+..+ .+||+
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1234679999999988888999999988654321 223344556889999999987666553 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+.+.||++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999998777999999999987 466789999999854
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=345.42 Aligned_cols=206 Identities=27% Similarity=0.392 Sum_probs=176.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999999998 999999998864321 2467999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.+.....+... .+....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchhh----
Confidence 9999987544322100 00112356678999999988888865
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++. . +++|+.++|+..++.++||+|++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 3 4567778899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=331.67 Aligned_cols=221 Identities=38% Similarity=0.617 Sum_probs=178.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC-CceeEEEEEEcCccC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRISGYPK 922 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g~~~ 922 (1106)
+.|+||.|.++.. ...+++|+|+||+|++||+++|+||||||||||+++|+|..+ +.+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 4567777766421 013579999999999999999999999999999999999764 123589999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHH-HHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.....++.++|++|++..++.+|+.||+.|..................+++ .++.+++.+..+..+ .+||+|||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 544456779999999988888999999988754332211122222234455 888999887666543 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||++..++.+.||++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998777999999999984357889999999985 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=332.29 Aligned_cols=205 Identities=30% Similarity=0.390 Sum_probs=174.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999998 999999998764321 1357999999998899999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.+.....+.. ..+....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------------------------------GAERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 999999875433210 001123467789999999888888765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.+++|+|++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999987653 24566778899999999999999999999
Q ss_pred EEEEcCHHHH
Q 001291 403 IVYQGPRELV 412 (1106)
Q Consensus 403 iv~~G~~~~~ 412 (1106)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=333.69 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=174.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999999987 9999999988754322 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+....+...+ + + ..+....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~--~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------P--P-----------EAEIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------C--C-----------HHHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999987543211000 0 0 001122456789999998888877765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++... +++|+.++|+..++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999876532 45566678888889999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=336.19 Aligned_cols=214 Identities=27% Similarity=0.372 Sum_probs=177.6
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++. .+.+|+|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 45677766531 14699999999999999999999999999999999998653 57999999987532
Q ss_pred ---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc--ccccccCCCCCCCCCHH
Q 001291 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 925 ---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~--~~~~~~~~~g~~~LS~G 999 (1106)
...++.++|++|++.+++.+|++||+.+....+ ....+...+.+.++++.+++.+ ..+..+ .+||+|
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 233457899999998888899999998765432 1223344556889999999985 555543 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 899999999987 47788999999985 789998
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|+..
T Consensus 218 ~~~~ 221 (242)
T cd03295 218 GTPD 221 (242)
T ss_pred cCHH
Confidence 8754
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=329.87 Aligned_cols=200 Identities=29% Similarity=0.403 Sum_probs=170.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999987 9999999988753 246799999998888889999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.++....+.. . .+....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVP----------K------------------------AEARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 9999875433210 0 00112456789999998888877765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec--CCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 402 (1106)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.++||++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999875433 4556667888888999999999999 799
Q ss_pred EEEEcCH
Q 001291 403 IVYQGPR 409 (1106)
Q Consensus 403 iv~~G~~ 409 (1106)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=338.81 Aligned_cols=219 Identities=25% Similarity=0.279 Sum_probs=177.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ .++++|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP--SSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CccEEEECCEEhh
Confidence 45677776553 024599999999999999999999999999999999998653 5899999998753
Q ss_pred h------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC-----CCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001291 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL-----PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1106)
Q Consensus 924 ~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g 992 (1106)
. ..+++.+||++|++.+++.+|+.||+.++..... .........++++.++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 143 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA---- 143 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 2 1235679999999988888999999976532100 001112233456788999999987666553
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.+||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.||++++|++
T Consensus 144 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 144 -DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 469999999999999999999999999999999999999999999998754 899999999997 46788999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 222 -G~i~~~~~~~~ 232 (243)
T TIGR02315 222 -GEIVFDGAPSE 232 (243)
T ss_pred -CEEEecCCHHH
Confidence 78998887643
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=347.55 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=179.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+... .....+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 488999998875210 0123599999999999999999999999999999999998763 589999999765
Q ss_pred Ch-------------------hcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC
Q 001291 923 KQ-------------------ETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981 (1106)
Q Consensus 923 ~~-------------------~~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~ 981 (1106)
.. ...++.+|||+|++. +++ .|++||+.|+.... ....++....+.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 234567999999873 444 59999998874322 223444556788999999996
Q ss_pred -cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHH
Q 001291 982 -PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1060 (1106)
Q Consensus 982 -~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~ 1060 (1106)
...+.. +.+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455544 3469999999999999999999999999999999999999999999998777999999999987 477
Q ss_pred HhcCeEEEEecCCEEEEEecCC
Q 001291 1061 EAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1061 ~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
+.||++++|++ |++++.|+..
T Consensus 241 ~~adri~vl~~-G~i~~~g~~~ 261 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTPY 261 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCHH
Confidence 88999999985 7999998764
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-37 Score=336.83 Aligned_cols=215 Identities=28% Similarity=0.371 Sum_probs=178.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67788877663 24699999999999999999999999999999999998653 4799999997653
Q ss_pred h-----------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001291 924 Q-----------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1106)
Q Consensus 924 ~-----------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g 992 (1106)
. ...++.++|++|++.+++..|+.||+.++..... ....+...+.+.++++.+++.+..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 142 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP---- 142 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh----
Confidence 2 1234579999999988888999999987542211 1223344556789999999987666543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++
T Consensus 143 -~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 143 -RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred -hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999999877999999999987 47788999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 220 G~i~~~~~~~ 229 (250)
T PRK11264 220 GRIVEQGPAK 229 (250)
T ss_pred CEEEEeCCHH
Confidence 7899988754
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=331.37 Aligned_cols=213 Identities=25% Similarity=0.388 Sum_probs=176.6
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++. +.+++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (220)
T cd03263 2 QIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP--TSGTAYINGYSIRT 68 (220)
T ss_pred EEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 46677766531 114699999999999999999999999999999999998653 58999999987642
Q ss_pred --hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 925 --~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...++.+||++|++.+++..|++||+.+....+. .......+.++++++.+++.+..+..+ .+||+||||
T Consensus 69 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 140 (220)
T cd03263 69 DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKR 140 (220)
T ss_pred chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHH
Confidence 2345679999999988888999999987654331 222334456789999999987666653 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.||++++|++ |++++.|+.
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999875 699999999997 47778999999985 789888764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=317.31 Aligned_cols=204 Identities=28% Similarity=0.410 Sum_probs=172.3
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh----cccceEEEEccCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDIHSP 942 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~g~v~q~~~~~~ 942 (1106)
++.++|++|||++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++... ..++.++||||....++
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 567899999999999999999999999999999999998763 489999999987542 34557999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
.+||+|||..++..+.. ++..+..++++.+.+- |.+.++.+.| .|||||||.++|||||+.+|++|+|||
T Consensus 92 ~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999988654421 1112222677777764 5555665543 599999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
||.||-|.-.+.|.++|+++.++ |.||+++-++... ..+.+||.++|.+ |++++.|+..+
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~-Al~iaDr~yvle~-Griv~~G~~~e 223 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARF-ALEIADRGYVLEN-GRIVLSGTAAE 223 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHH-HHHhhCEEEEEeC-CEEEEecCHHH
Confidence 99999999999999999999865 7799999998874 6789999999985 79999998654
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=343.03 Aligned_cols=220 Identities=24% Similarity=0.328 Sum_probs=179.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++|.++... ...+.+|+||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56888888874210 0113599999999999999999999999999999999998763 5899999998763
Q ss_pred h-------hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
. ..+++.+||++|++. .+...||.||+.|+.... ....++.+..+.++++.++|. .+.+.. +.
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 143 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PF 143 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cc
Confidence 1 234567999999873 233469999998875332 223445566788999999996 455554 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
.||||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++|+|||++|||++ ++.+.||++++|++ |+
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~ 221 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GH 221 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999877999999999997 47788999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
+++.|++.+
T Consensus 222 i~~~g~~~~ 230 (288)
T PRK13643 222 IISCGTPSD 230 (288)
T ss_pred EEEECCHHH
Confidence 999987643
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=310.40 Aligned_cols=208 Identities=30% Similarity=0.421 Sum_probs=178.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc---ceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1106)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|++||.+++.+.+. +.-|..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45999999999999999999999999999999999999998 99999999999887663 5678999998887788
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+|-+.++..-.+.|.. ..+...+++.+|...++.+.+.+..-
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~R~y~---- 134 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAGRDYR---- 134 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhccchh----
Confidence 999999998754322210 11233457788888999888876653
Q ss_pred CCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
.|||||||||.+||.|+. ++++||||||||+||......++++.|++++. + ..|+.+.|+..-+..+||+|
T Consensus 135 -~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 135 -TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred -hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 499999999999999963 44588999999999999999999999999874 3 56667889999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++||++..|++++++.
T Consensus 212 vll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 212 VLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeCCeEeecCCHHHhcC
Confidence 9999999999999998863
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=330.51 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=166.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999997 999999998875432 235799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.++.+..+.. . .+....++.+++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------P------------------------RDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999876532210 0 01123456789999999888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|+.++|+.+++..+||+|++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 455677888889999999999999
Q ss_pred cCCeE
Q 001291 399 SDGQI 403 (1106)
Q Consensus 399 ~~G~i 403 (1106)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=313.17 Aligned_cols=210 Identities=22% Similarity=0.369 Sum_probs=183.0
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHI 238 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1106)
+++++++|||+.+++||+++|+|||||||||.+.++.|+..|+ +|+|.++|.+++..... .-+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 3467999999999999999999999999999999999999999 99999999999876543 3589999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
-.+||+|||.-....+... ....+.+...+.+|+.|+|.+++|..-..
T Consensus 92 r~LtV~dNi~~vlE~~~~d--------------------------------~~~~~~~~~l~~LL~ef~i~hlr~~~a~s 139 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKD--------------------------------LKKAERKEELDALLEEFHITHLRDSKAYS 139 (243)
T ss_pred hcCcHHHHHHHHHhhhhcc--------------------------------hhHHHHHHHHHHHHHHhchHHHhcCcccc
Confidence 9999999999776543210 01112344578899999999999987554
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||+|+-|||||+.+|+.++||||++|.||-+..+|.+.++.+.. .+.-|++.-|...|+..+|||.+++
T Consensus 140 -----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaYIi 212 (243)
T COG1137 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAYII 212 (243)
T ss_pred -----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEEEE
Confidence 999999999999999999999999999999999999999999998864 3555666789999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=330.24 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=173.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +++.+|+|+||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP--SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 46778877662 123699999999999999999999999999999999998653 5899999998653
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. .+++.++|++|++.+++..|+.||+.+....+ ....++....++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 21 13567999999998878899999998865432 1223344456788999999987666553 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||++||+++ ++...||++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999997 47778999999986 565
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=331.63 Aligned_cols=199 Identities=31% Similarity=0.449 Sum_probs=166.3
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---c-ccceEEEEccCCCCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T-FARISGYCEQNDIHSPFV 944 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~g~v~q~~~~~~~~ 944 (1106)
+++|+|+||+|++|+++||+||||||||||+++|+|..++ ..|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 4699999999999999999999999999999999998663 589999999875431 1 245699999999888889
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPT 1023 (1106)
|++||+.+....+. .......+.++++.+ ++.+..+..+ .+||+|||||++|||||+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988653321 122334566778877 4665555543 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1024 sgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++ |++++.|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999987 47788999999985 788888764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=339.35 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=177.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1106)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999998 9999999998764322 35799999986 36778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+|||.|+.+..+.. .++....++.+++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------------------------------HEEMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999999875432210 011123467789999999888887765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++ ..||+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999886533 45566677777777 58999999999
Q ss_pred CeEEEEcCHHHHHH---HHHhcCCCCC
Q 001291 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1106)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~~p 424 (1106)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999988753 2344455433
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=339.08 Aligned_cols=207 Identities=25% Similarity=0.351 Sum_probs=176.5
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1106)
.+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.
T Consensus 36 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 36 QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 457999999999999999999999999999999999999998 9999999988754321 246999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+++.+||+||+.++....+.. . .+....++.+++.+||++..++.+
T Consensus 113 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 158 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQGVP----------R------------------------AEREERAAEALELVGLEGWEHKYP 158 (269)
T ss_pred cCCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCCc
Confidence 898999999999875432210 0 001124567899999998888887
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+. .+.+|++++|+..++.+++|+++
T Consensus 159 ~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~ 232 (269)
T cd03294 159 DE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIA 232 (269)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEE
Confidence 65 9999999999999999999999999999999999999999999987653 34566667888889999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 001291 397 LLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++++.|+++++.
T Consensus 233 ~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 233 IMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988774
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=332.20 Aligned_cols=213 Identities=28% Similarity=0.389 Sum_probs=175.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 45677776653 34699999999999999999999999999999999998653 4899999998753
Q ss_pred hh--cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 924 QE--TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~~--~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...+.++|++|++.+++..|++||+.+....+ ....+...+.+.++++.+++.+..+..+ .+||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 21 22346899999988878899999998765332 1223334456788999999987666653 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. + ..||++++|++ |++++.|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999874 58999999999973 5 45999999985 78998887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 216 ~~ 217 (236)
T TIGR03864 216 AA 217 (236)
T ss_pred HH
Confidence 54
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=328.62 Aligned_cols=222 Identities=25% Similarity=0.350 Sum_probs=195.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1106)
...-++|+|+.++.||+..|||=||||||||+++|.++.+|+ .|+|.++|.++..... ++.+++|+|+..
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345789999999999999999999999999999999999998 9999999999866543 367999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
++|+.||.||..|+.+.+|++. ++++.++.+.|+..||+..++.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~----------------------------------~er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPK----------------------------------AEREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCH----------------------------------HHHHHHHHHHHHHcCchhhhhcCc
Confidence 9999999999999999988632 123456778899999999999988
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
.+ ||||+||||.+||||+.+|+|||||||+|+|||--+.++.+.|.++-... +.+|++++|+.+|++.+.|||.
T Consensus 163 ~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l-~KTIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 NE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL-KKTIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred cc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHh-CCeEEEEecCHHHHHhccceEE
Confidence 76 99999999999999999999999999999999999999998887775544 5566778999999999999999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCCCCCCCChhHHHHhh
Q 001291 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~~p~~~~~ad~l~~v 436 (1106)
+|.+|+||..|+++|++. .|.+.-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 46666667777665
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=310.11 Aligned_cols=217 Identities=26% Similarity=0.383 Sum_probs=183.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++.+|++|++. ++.+|++||++++|||++||+|||||||||||+.|+|...+ ..|.+.++|.+..
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 45678888763 56799999999999999999999999999999999997764 4799999999876
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
+ ...++..+.++|+..+.+..||+|-+.++..-... .....+..+.++++|+..++..+..... ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 5 33456779999999888778999999998643211 1122244455789999999998877653 4699999
Q ss_pred HHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 1001 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 1001 rqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||.+||.|++ ++++||||||||+||...+..++++.|+++++|..|++|-||++. ...+||||++|+ +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999986 446899999999999999999999999999999999999999996 678999999998 579
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++..|++.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999998875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=329.84 Aligned_cols=199 Identities=27% Similarity=0.420 Sum_probs=164.0
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC--CCCCH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS--PFVTV 946 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~--~~~tv 946 (1106)
..+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. ..++.++|++|++.+. +..|+
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 5899999998653 2456799999998653 33799
Q ss_pred HHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 947 YESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 947 ~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
.||+.+....+.. .....+..++.++++++.+++.+..++.+ .+||||||||++|||||+.+|++|||||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00112234456889999999987666653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999998777999999999987 47788999999975 4 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=333.75 Aligned_cols=215 Identities=28% Similarity=0.401 Sum_probs=175.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 35999999999999999999999999999999999999987 9999999998765432 2469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++....+... ... .. . .....+....++++++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~---~~---~-----------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLL---AR---A-----------RREEREARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhccccc-------ccc---cc---c-----------cccHHHHHHHHHHHHHHcCccchhhCChhh--
Confidence 999999998754321100 000 00 0 000011223467789999998888877765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||+|++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998764 3 45566778888999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=342.89 Aligned_cols=205 Identities=26% Similarity=0.382 Sum_probs=178.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999998875422 2457999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|.||+.|.+++.+... .+....++.+++.+||++..|+.++.
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchhh----
Confidence 9999998765543210 01122467789999999998888765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+++|++|||||||+|||+.++..+.+.++++. .+ ++|+.++|..+++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999874 24 667778899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=337.96 Aligned_cols=228 Identities=19% Similarity=0.285 Sum_probs=185.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+||||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478888887663 34699999999999999999999999999999999998653 589999999875
Q ss_pred Chh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 KQE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
... ..++.++|++|++.+++.+|+.||+.+...... ....+..+..+.++++.+++.+..+..+ .+|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 321 134569999999888888999999987543211 1223334456788999999987776653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|||||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999987 57788999999975 799
Q ss_pred EEEecCCCc----hhHHHHHHHh
Q 001291 1076 VYVGPLGHH----SCHLISYFEV 1094 (1106)
Q Consensus 1076 ~~~G~~~~~----~~~~~~yf~~ 1094 (1106)
++.|+..+. ....-.|++.
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~ 245 (269)
T PRK11831 223 VAHGSAQALQANPDPRVRQFLDG 245 (269)
T ss_pred EEeCCHHHHhcCCcHHHHHHHHH
Confidence 999876531 1234567764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=342.59 Aligned_cols=219 Identities=22% Similarity=0.308 Sum_probs=178.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++... ...+++|+||||+|++||++||+|+||||||||+++|+|..++ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67888888874210 0123599999999999999999999999999999999998764 4799999998763
Q ss_pred h-------hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
. ...++.+|||+|++. .....|+.||+.|+.... ....++..+.+.++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PF 144 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cc
Confidence 2 134567999999863 222359999998864322 233444556788999999996 555554 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
+||||||||++|||||+.+|+||||||||+|||+.++..++++|+++.+ .|+|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G 222 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-G 222 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 6999999999999999999999999999999999999999999999875 4899999999987 47788999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 223 ~i~~~g~~~ 231 (286)
T PRK13646 223 SIVSQTSPK 231 (286)
T ss_pred EEEEECCHH
Confidence 999998754
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=340.68 Aligned_cols=217 Identities=25% Similarity=0.376 Sum_probs=180.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. ++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p--~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP--SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CccEEEECCEEC
Confidence 5788999887631 24699999999999999999999999999999999998663 589999999876
Q ss_pred C-----hhcccceEEEEccCCCC-CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 K-----QETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~-----~~~~~~~~g~v~q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. ...+++.+||++|++.. ....|++||+.++.... ....+...+.++++++.++|.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 3 12345679999998743 34579999998764322 2233444567889999999988777653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|+|||||++|||||+.+|+||+|||||+|||+.++..++++|+++.++ |+|||++||+++ ++.+.||++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999765 899999999997 46678999999985 689
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
++.|+..+
T Consensus 221 ~~~g~~~~ 228 (283)
T PRK13636 221 ILQGNPKE 228 (283)
T ss_pred EEeCCHHH
Confidence 99997653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=333.72 Aligned_cols=216 Identities=26% Similarity=0.368 Sum_probs=179.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++++++.++ ++.+|+|+||++++|+++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR--DAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 56777776653 34699999999999999999999999999999999998653 5899999998753
Q ss_pred h----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.++|++|++..++.+|+.||+.+....+. ....+..+..++++++.+++.+..+..+ .+||+|
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHH
Confidence 2 1134569999999988888999999987543221 1223344556889999999987665543 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|++|+|||||+|||+.++..+.+.++++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 57788999999975 7899988
Q ss_pred cCCC
Q 001291 1080 PLGH 1083 (1106)
Q Consensus 1080 ~~~~ 1083 (1106)
+..+
T Consensus 220 ~~~~ 223 (241)
T PRK10895 220 TPTE 223 (241)
T ss_pred CHHH
Confidence 7653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=328.32 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=171.1
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+++||++++|+++||+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP--DSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCc
Confidence 4667776653 24699999999999999999999999999999999998653 58999999987531
Q ss_pred -----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 925 -----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 925 -----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
...++.++|++|++.+++.+|+.||+.+...... ....+..++.++++++.+++.+..+..+ .+||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2345679999999988888999999987642111 1223344556789999999987666653 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++.+.||++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999987 577889999999864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-37 Score=327.36 Aligned_cols=208 Identities=34% Similarity=0.487 Sum_probs=173.0
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ +.++|+|+||+|++| +++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 65 (211)
T cd03264 2 QLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVLK 65 (211)
T ss_pred EEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCcccc
Confidence 4667776553 346999999999999 9999999999999999999998653 58999999987543
Q ss_pred --hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 925 --~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..+..+ .+||+||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (211)
T cd03264 66 QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRR 137 (211)
T ss_pred chHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHH
Confidence 2235679999999988888999999987654331 222333456789999999987766553 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++ |++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999875 599999999987 46678999999985 6887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=335.07 Aligned_cols=216 Identities=20% Similarity=0.257 Sum_probs=179.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 367888887763 34699999999999999999999999999999999998653 479999999765
Q ss_pred Ch----------------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001291 923 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-Q 985 (1106)
Q Consensus 923 ~~----------------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~ 985 (1106)
.. ..+++.++|++|++.+++.+|++||+.++..... .......+.++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1335679999999988888999999987532111 122344456788999999997653 4
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 986 ~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
.. +.+||+|||||++|||||+.+|++|+|||||+|||+.+++.+.+.|++++++|+|||++||+++ ++...||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 3469999999999999999999999999999999999999999999999877999999999987 46778999
Q ss_pred EEEEecCCEEEEEecCC
Q 001291 1066 LFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~ 1082 (1106)
+++|++ |++++.|+..
T Consensus 222 i~~l~~-G~i~~~~~~~ 237 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAPE 237 (257)
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999985 7899988754
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=376.00 Aligned_cols=207 Identities=29% Similarity=0.434 Sum_probs=172.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||.++..... ++.++||+|++.+| +.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCc
Confidence 6999999999999999999999999999999999999998 9999999999887654 68999999987555 679
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.++.. +.+.+..+.|+...+.. -.+..++...||.||+ ++.
T Consensus 563 I~eNi~l~~p-------------------------~~~~e~i~~A~~~ag~~--------~fI~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGNP-------------------------EATDEEIIEAAQLAGAH--------EFIENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCcH--------HHHHhccccccccccc-CCC
Confidence 9999998642 22222333333222211 1234688899999995 677
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|++.|+ ..+.+.||+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHR--l~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHR--LSTIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEcc--chHhhhccEEEEccCCc
Confidence 899999999999999999999999999999999999999999999864 35666665443 45789999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
|+.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999976
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=344.77 Aligned_cols=245 Identities=20% Similarity=0.231 Sum_probs=189.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+.++|++.+++............+...+++||||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 477888887665321100000011235799999999999999999999999999999999998764 489999999876
Q ss_pred Chh------cccceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001291 923 KQE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1106)
Q Consensus 923 ~~~------~~~~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~ 993 (1106)
... .+++.++||+|++ .+.|.+|+.||+.+...... .....++.++.+.++++.+++. +..+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 421 2356799999997 46788999999987644321 1234455566788999999995 344544 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+.+|++|||||||+|||+.++..|+++|+++.++ |.|||+||||++ .+.+.||++++|++
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999764 899999999997 47778999999985
Q ss_pred CEEEEEecCCCc----h-hHHHHHHHhCCC
Q 001291 1073 GREVYVGPLGHH----S-CHLISYFEVCPD 1097 (1106)
Q Consensus 1073 G~~~~~G~~~~~----~-~~~~~yf~~~~g 1097 (1106)
|++++.|+..+. . ...-.+.+++|.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~l~~~~~~ 267 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKALMSAVPI 267 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHHHHhhCCC
Confidence 799999975431 1 123345667764
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-37 Score=329.54 Aligned_cols=195 Identities=27% Similarity=0.406 Sum_probs=164.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999997 9999999988754321 3579999999989
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.++....+.. . .+....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------K------------------------KERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhcChh
Confidence 99999999999876433210 0 0012245678999999988887776
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++. +||++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEE
Confidence 5 99999999999999999999999999999999999999999999876423 455666777777776 9999999
Q ss_pred ecCCeE
Q 001291 398 LSDGQI 403 (1106)
Q Consensus 398 L~~G~i 403 (1106)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-37 Score=340.53 Aligned_cols=217 Identities=23% Similarity=0.303 Sum_probs=181.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++.+ ....+|+|+||+|++||++||+|+||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37788998877421 123599999999999999999999999999999999998663 589999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.+||++|++. .++..||+||+.|+.... ....++.++.++++++.++|.+..+..+ .+|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 234567999999974 566789999998874322 2334445567899999999987777654 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..||++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 999999999987 35 68999999975 79999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 221 ~g~~~ 225 (279)
T PRK13650 221 TSTPR 225 (279)
T ss_pred ECCHH
Confidence 88764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=331.00 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=170.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. .....+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP--TSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 4677887765310 0013699999999999999999999999999999999998653 5899999998764
Q ss_pred h------hcccceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 Q------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~------~~~~~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
. ..+++.+||++|++ .+.+.+|++||+.+....... ....+..+..++++++.+++. ...+..+ .
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRYP-----H 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCCc-----h
Confidence 3 23456799999998 355679999999876433211 111111122235788999985 4555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 69999999999999999999999999999999999999999999999765 899999999997 46678999999985 6
Q ss_pred EEEEEe
Q 001291 1074 REVYVG 1079 (1106)
Q Consensus 1074 ~~~~~G 1079 (1106)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=327.77 Aligned_cols=193 Identities=26% Similarity=0.381 Sum_probs=162.2
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCC-CCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDI-HSPFV 944 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~-~~~~~ 944 (1106)
+.+|+|+||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++. .++..
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP--TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 4699999999999999999999999999999999997653 58999999986532 234567999999975 35678
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
|+.||+.+..... .......+..++++++.+++.+..++.+ ..||||||||++|||||+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764322 1222334456788999999987666653 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
|||+.++..+++.|++++++|+|||++||+++ ++...||++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999987 477779999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=336.30 Aligned_cols=203 Identities=26% Similarity=0.331 Sum_probs=172.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCC-CCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1106)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.+
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999999998 9999999998764322 357999999863 45678
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+....+.. ..+....++.+++.+||.+..++.+.+
T Consensus 96 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~--- 138 (274)
T PRK13647 96 TVWDDVAFGPVNMGLD----------------------------------KDEVERRVEEALKAVRMWDFRDKPPYH--- 138 (274)
T ss_pred cHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCChhh---
Confidence 9999999875432110 001123467789999999888888765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|++++. . +.+|+.++|+.+++.++||+|++|++|
T Consensus 139 --LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 139 --LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998764 3 456677889999999999999999999
Q ss_pred eEEEEcCHHHH
Q 001291 402 QIVYQGPRELV 412 (1106)
Q Consensus 402 ~iv~~G~~~~~ 412 (1106)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=334.19 Aligned_cols=215 Identities=24% Similarity=0.287 Sum_probs=176.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 478888887653 24699999999999999999999999999999999997653 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ..+++.+||++|++.+++ .|++||+.|....+ ....+..++.++++++.+++.+ ..+..
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988777 89999998865332 1223334456788999998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+..||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 899999999987 4778899999997
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 228 ~-G~i~~~~~~~ 238 (258)
T PRK14268 228 M-GELIEFGQTR 238 (258)
T ss_pred C-CEEEEeCCHH
Confidence 5 7999998764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=341.45 Aligned_cols=216 Identities=25% Similarity=0.370 Sum_probs=176.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC-----------------------
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----------------------- 221 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------------------- 221 (1106)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+...
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999998 8999999875421
Q ss_pred ----CCccceEEEEcCCC-CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHh
Q 001291 222 ----FVPERTAAYISQHD-NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEAN 296 (1106)
Q Consensus 222 ----~~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~ 296 (1106)
...++.++||+|++ ..+...||+|||.|+....+.. .++..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------------------------------KEEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------------------HHHHH
Confidence 01145799999985 3455689999999976543210 01122
Q ss_pred HHHHHHHHHcCCc-ccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 001291 297 VITDYYLKVLGLD-ICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG 375 (1106)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~ 375 (1106)
..++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3467789999996 677777665 999999999999999999999999999999999999999999998753 3 5
Q ss_pred eEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHH---HHHhcCCCCC
Q 001291 376 TAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE---FFESMGFKCP 424 (1106)
Q Consensus 376 t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~---~f~~~G~~~p 424 (1106)
.+|+.++|+.+++.++||+|++|++|+++++|+++++.. .+...|...|
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 567778899999999999999999999999999988752 2334455444
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=326.91 Aligned_cols=200 Identities=30% Similarity=0.432 Sum_probs=170.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35999999999999999999999999999999999999987 9999999988754322 3579999999888889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.++.+..+.. ..+....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------------------------------KDEIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99999875432210 001123456789999999888888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++... +.+|+.++|+..++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876533 45566678888899999999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=328.46 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=168.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 2469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.+.....+.. . .+....++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------P------------------------AEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999875432110 0 0112346678999999888777765
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ ||||||||++||++++.+|++|||||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 5 9999999999999999999999999999999999999999999987543 34556667788777765 589999
Q ss_pred ecCCeEEEEcCH
Q 001291 398 LSDGQIVYQGPR 409 (1106)
Q Consensus 398 L~~G~iv~~G~~ 409 (1106)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=330.73 Aligned_cols=205 Identities=22% Similarity=0.375 Sum_probs=174.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 36999999999999999999999999999999999999998 9999999988754322 2469999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.+.....+.. . .+....++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------K------------------------KEREEKLEELLEEFHITHLRKSKASS-- 133 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChhh--
Confidence 99999999864322110 0 01122456789999999888887765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|+|++|++
T Consensus 134 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 134 ---LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3 45667778888899999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=351.09 Aligned_cols=206 Identities=22% Similarity=0.333 Sum_probs=177.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
..+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.++||+|+..+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999998 9999999998765432 2479999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+....+... .+....++++++.+||++..++.+.
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~~ 163 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYPD 163 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCcc
Confidence 999999999999865433210 0112345678999999988888776
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.... +++|++++|+.+++.+++|+|++
T Consensus 164 ~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 164 E-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 5 99999999999999999999999999999999999999999999875433 45666788999999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|++++.|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999998874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=333.97 Aligned_cols=207 Identities=22% Similarity=0.280 Sum_probs=175.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 478899988763 23699999999999999999999999999999999998653 489999998764
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ..++.++|++|++.+++..||+||+.+... . ..+..+.++++.+++.+..+..+ .+|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235679999999988888999999987521 0 12345788999999987766653 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++|||++ ++.+.||++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999864 5899999999987 46788999999985 789998875
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 219 ~ 219 (257)
T PRK11247 219 D 219 (257)
T ss_pred c
Confidence 4
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=326.69 Aligned_cols=207 Identities=25% Similarity=0.348 Sum_probs=173.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++..|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999865 35899999998754322 256899999998888899999
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
|+.+....+. .. +..+.++++.+++.+..+..+ ..||+|||||++||||++.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654321 11 234678999999987776653 46999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHH
Q 001291 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFE 1093 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~ 1093 (1106)
.++..+++.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|++.+ ...+-+.|.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~-~~~~~~~~~ 219 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK-SENLEKLFV 219 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh-cccHHHHHH
Confidence 9999999999999777999999999987 47788999999985 78999998754 223334443
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=326.97 Aligned_cols=198 Identities=31% Similarity=0.457 Sum_probs=168.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC--CccceEEEEcCCCCCCCCCCH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--VPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999998 99999999887532 124579999999988899999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+.....+.. ..+....++.+++.+||++..+..+++
T Consensus 96 ~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------------------------------GDELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998865432210 001123467789999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++.. . +.+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 45666678888899999999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=327.06 Aligned_cols=211 Identities=24% Similarity=0.319 Sum_probs=171.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. .+.+++|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 4567787766421 0124699999999999999999999999999999999998653 5899999998753
Q ss_pred hh---c---cc-ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 QE---T---FA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~---~---~~-~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
.. . ++ +.++|++|++.+++.+|++||+.+....+. .......+.+.++++.+++.+..+..+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 21 1 22 569999999888888999999987653321 122333456788999999987666653 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|||||||++|||||+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++|||++ .+ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999998754 899999999986 34 56899999985 565
Q ss_pred E
Q 001291 1076 V 1076 (1106)
Q Consensus 1076 ~ 1076 (1106)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 4
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=339.76 Aligned_cols=219 Identities=23% Similarity=0.287 Sum_probs=178.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.+. ...+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 56788887764210 0013599999999999999999999999999999999998764 5899999998753
Q ss_pred h-------hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
. ...++.+||++|++. ....+|+.||+.|+...+ ....+...+.++++++.++|. +..+..+ .
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----F 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----c
Confidence 2 223457999999973 233579999998764332 223344556788999999997 5666653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999777999999999997 47789999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (287)
T PRK13641 223 LIKHASPK 230 (287)
T ss_pred EEEeCCHH
Confidence 99988755
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.55 Aligned_cols=203 Identities=30% Similarity=0.422 Sum_probs=173.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999998 999999998875321 2356999999988888999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.+..+..+... .+....++.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999998755432100 00112356788999999888887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998743 3 567778888889999999999999999
Q ss_pred EEEEcCHHHH
Q 001291 403 IVYQGPRELV 412 (1106)
Q Consensus 403 iv~~G~~~~~ 412 (1106)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=331.47 Aligned_cols=215 Identities=24% Similarity=0.303 Sum_probs=176.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcCc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~ 920 (1106)
+.++|+++.++ +..+++|+||+|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 46778876653 245999999999999999999999999999999999976532 12799999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC----cccccccCCC
Q 001291 921 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGLP 991 (1106)
Q Consensus 921 ~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~~ 991 (1106)
+... ...++.++|++|++.+++ .|++||+.+....+. ........+.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7642 233567999999988887 999999988654321 122334455688999999997 444443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999876 489999999997 47788999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 219 -G~i~~~~~~~ 228 (247)
T TIGR00972 219 -GELVEYGPTE 228 (247)
T ss_pred -CEEEEeCCHH
Confidence 7899988754
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=332.91 Aligned_cols=215 Identities=24% Similarity=0.304 Sum_probs=178.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35677877663 24699999999999999999999999999999999998653 5899999997653
Q ss_pred h----------------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc
Q 001291 924 Q----------------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987 (1106)
Q Consensus 924 ~----------------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~ 987 (1106)
. ...++.++|++|++.+++..|+.||+.++.... ........+..+.++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 123567999999998888899999998753211 1123334455688999999998776655
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeE
Q 001291 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1066 (1106)
Q Consensus 988 ~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v 1066 (1106)
. .+||+|||||++|||||+.+|++|||||||+|||+.++..+.++|+++.++ |.|||++||+++ ++...||++
T Consensus 144 ~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 P-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred h-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3 469999999999999999999999999999999999999999999998764 899999999997 477889999
Q ss_pred EEEecCCEEEEEecCC
Q 001291 1067 FLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1067 ~~l~~gG~~~~~G~~~ 1082 (1106)
++|++ |++++.|+..
T Consensus 218 ~~l~~-G~i~~~g~~~ 232 (252)
T TIGR03005 218 CFFDK-GRIVEQGKPD 232 (252)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 7899988754
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=333.99 Aligned_cols=207 Identities=23% Similarity=0.362 Sum_probs=174.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|+..++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35999999999999999999999999999999999999997 999999998875432 135699999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||.||+.++...... ... .+....+..+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPA------------------------PLLHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCH------------------------HHHHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999986432100 000 00112356678999999888888765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++|++++|+..++.++||+|++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999987643 3456666788899999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=302.39 Aligned_cols=201 Identities=27% Similarity=0.410 Sum_probs=177.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+|+|+|++|.+||.++++||||||||||+|+++|..++ ..|.|.+||.++....-. -|.|+|++.+.|.+++.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPgae--rgvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGAE--RGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCcc--ceeEeccCccchhhHHHH
Confidence 3599999999999999999999999999999999998874 589999999987543222 389999999999999999
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
|+.|+..++ .+.+.++.+.+.+++..+||.+..++.+ .+||||||||+.|||||+.+|+.|+||||++.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4667888889999999999999887764 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecC-CEEEEEecCC
Q 001291 1029 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRG-GREVYVGPLG 1082 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g-G~~~~~G~~~ 1082 (1106)
-+++.++++|-++. ++|+.+++|||+.+ +..-.++++++|..| |+++..=+++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999886 46999999999987 455578999999854 7888765554
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=347.33 Aligned_cols=208 Identities=24% Similarity=0.300 Sum_probs=178.5
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCc----cCCCCCc-------cceEEEE
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH----NMDEFVP-------ERTAAYI 231 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~yv 231 (1106)
....+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|. ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999998 999999996 3332211 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc
Q 001291 232 SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1106)
Q Consensus 232 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1106)
+|++.+++.+||+||+.|+....+... .+....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchh
Confidence 999999999999999999865433210 1112346778999999998
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1106)
.|+.+++ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++... .+++|++++|+..++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~-~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAK-LNKTIIFVSHDLDEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 8888776 9999999999999999999999999999999999999999999987543 356667788999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHH
Q 001291 392 FDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=333.52 Aligned_cols=219 Identities=22% Similarity=0.258 Sum_probs=179.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +.++|+|+||+|++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP--TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CcceEEECCEEC
Confidence 377888887653 34699999999999999999999999999999999998653 589999999875
Q ss_pred Chh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC----------C--CCChHHHHHHHHHHHHHcCCCccccc
Q 001291 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLP----------P--EVNSETRKMFIEEVMELVELKPLRQS 986 (1106)
Q Consensus 923 ~~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~--~~~~~~~~~~v~~~l~~~~l~~~~~~ 986 (1106)
... . .+..++|++|++.+++.+|+.||+.++...+.. . ..........+.++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 431 1 223589999999988889999999886431110 0 00111233467888999999877666
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCe
Q 001291 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 987 ~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
.+ .+||+|||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 469999999999999999999999999999999999999999999998765 899999999997 57788999
Q ss_pred EEEEecCCEEEEEecCCC
Q 001291 1066 LFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~~ 1083 (1106)
+++|++ |++++.|+..+
T Consensus 224 i~~l~~-g~i~~~~~~~~ 240 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPEE 240 (255)
T ss_pred EEEEEC-CeEEecCCHHH
Confidence 999985 78999888654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=330.31 Aligned_cols=226 Identities=25% Similarity=0.299 Sum_probs=181.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++++|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56777776653 34699999999999999999999999999999999998653 5899999998754
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-----CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-----PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.. ..++.++|++|++.+++.+|++||+.+....... .....+..+..++++++.+++.+..+..+ .
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 21 1234699999999988889999999875421100 00112334556889999999987766653 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
.||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999865 799999999987 47788999999985 78
Q ss_pred EEEEecCCCc--hhHHHHHH
Q 001291 1075 EVYVGPLGHH--SCHLISYF 1092 (1106)
Q Consensus 1075 ~~~~G~~~~~--~~~~~~yf 1092 (1106)
+++.|+..+. ...+.++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ 239 (242)
T TIGR03411 220 VLAEGSLDQVQADPRVIEVY 239 (242)
T ss_pred EEeeCCHHHHhcCHHHHHHh
Confidence 9988875432 22355555
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.95 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=177.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP--QKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEECC
Confidence 45677776653 123599999999999999999999999999999999998663 5899999998764
Q ss_pred h----hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 924 Q----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 924 ~----~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
. ...++.+||++|++. .+...|+.||+.|..... .......++.++++++.+++.+..+..+ ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 2 233567999999975 355689999998765322 1234444567889999999988777653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++ +.||++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999998877999999999997 45 67999999985 789998
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|+..
T Consensus 217 g~~~ 220 (274)
T PRK13644 217 GEPE 220 (274)
T ss_pred CCHH
Confidence 8754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=336.98 Aligned_cols=206 Identities=20% Similarity=0.300 Sum_probs=172.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-------ccceEEEEcCCC-C
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHD-N 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 236 (1106)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999998 999999999875321 245799999985 2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
.+...||.||+.|+....+.. ..+....++.+++.+||+ ...++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------------------------------LDEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhhCC
Confidence 333469999999875432210 001123467789999997 677776
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+.+ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++... .+++|++++|+.+++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 PFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 654 9999999999999999999999999999999999999999999987543 4566777889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998865
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=327.17 Aligned_cols=203 Identities=25% Similarity=0.401 Sum_probs=170.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999998 9999999988754332 3569999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1106)
+||+||+.++....+. . +....++.+++.+ ++++..++.+++
T Consensus 90 ~t~~~~l~~~~~~~~~--~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARRR--A----------------------------------KRKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcCc--h----------------------------------hHHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 9999999987543210 0 0011234556666 577667776655
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999998754 3 4566677888899999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=330.24 Aligned_cols=214 Identities=23% Similarity=0.324 Sum_probs=176.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 377888887663 24699999999999999999999999999999999998653 589999999875
Q ss_pred Chh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCCC
Q 001291 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ~~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~l~~~~~~~~~~~g~~~LS 997 (1106)
... ..++.++|++|++..++..||.||+.++.... ..+.....++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 13457999999998888899999998764221 1122334567777777 465544443 34699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
+|||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999998877999999999987 57889999999985 78999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.|+..+
T Consensus 218 ~~~~~~ 223 (237)
T PRK11614 218 EDTGDA 223 (237)
T ss_pred eCCHHH
Confidence 998653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=335.82 Aligned_cols=216 Identities=25% Similarity=0.360 Sum_probs=179.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++. +..+|+|+||+|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 567888877631 2359999999999999999999999999999999999866 35899999998754
Q ss_pred h---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.+||++|++. .+...||.||+.+..... ....+..++.++++++.+++.+..+..+ ..||+|
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 234567899999974 334579999998765322 2334444566889999999987777664 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999997 57789999999985 689999
Q ss_pred ecCCC
Q 001291 1079 GPLGH 1083 (1106)
Q Consensus 1079 G~~~~ 1083 (1106)
|+..+
T Consensus 220 g~~~~ 224 (277)
T PRK13652 220 GTVEE 224 (277)
T ss_pred CCHHH
Confidence 87653
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=324.71 Aligned_cols=198 Identities=28% Similarity=0.410 Sum_probs=169.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999999987 9999999987653 2346799999999888999999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.+.....+... .+....++++++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 99998654332100 00123456789999999888877765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998754 3 456677888889999999999999999998
Q ss_pred EEc
Q 001291 405 YQG 407 (1106)
Q Consensus 405 ~~G 407 (1106)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=330.32 Aligned_cols=206 Identities=28% Similarity=0.424 Sum_probs=173.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999997 9999999988754322 35799999999899999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc--cccccccCc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI--CADTMVGDE 319 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 319 (1106)
||+||+.++.+..+... .+....+..+++.+||+. ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 99999998754322100 001224567899999985 66666654
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|++++|+..++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999987653 34566667888888999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=330.28 Aligned_cols=217 Identities=23% Similarity=0.274 Sum_probs=177.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcCc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~ 920 (1106)
+.++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67788877653 246999999999999999999999999999999999976431 35899999998
Q ss_pred cCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCCCCC
Q 001291 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGLPGV 993 (1106)
Q Consensus 921 ~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~----~~~~~~~~g~ 993 (1106)
++.. ..+++.+||++|++.+++.+|+.||+.++...+.. ........+.++++++.+++.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7642 23456799999999888889999999876433211 11223345568899999998542 2333 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+||||||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.||++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 46999999999999999999999999999999999999999999999864 899999999987 47788999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 222 ~i~~~g~~~ 230 (250)
T PRK14247 222 QIVEWGPTR 230 (250)
T ss_pred eEEEECCHH
Confidence 899988754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=329.73 Aligned_cols=218 Identities=22% Similarity=0.249 Sum_probs=173.7
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~ 68 (243)
T TIGR01978 2 KIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLE 68 (243)
T ss_pred eEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCC
Confidence 5677776653 346999999999999999999999999999999999974111458999999987543
Q ss_pred h---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC----CCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCC
Q 001291 925 E---TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP----EVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNG 995 (1106)
Q Consensus 925 ~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~----~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~ 995 (1106)
. .. +..++|++|++..++.+|++|++.+........ ....+...+.+.++++.+++. ...+..+. .+
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~ 144 (243)
T TIGR01978 69 LEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EG 144 (243)
T ss_pred CCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cC
Confidence 1 12 234899999999889999999997754322110 012223345678899999997 34454421 24
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~gG~ 1074 (1106)
||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+... ||++++|++ |+
T Consensus 145 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~ 222 (243)
T TIGR01978 145 FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GR 222 (243)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877999999999997 46666 799999985 78
Q ss_pred EEEEecC
Q 001291 1075 EVYVGPL 1081 (1106)
Q Consensus 1075 ~~~~G~~ 1081 (1106)
+++.|+.
T Consensus 223 i~~~g~~ 229 (243)
T TIGR01978 223 IVKSGDV 229 (243)
T ss_pred EEEecCH
Confidence 9988864
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=330.94 Aligned_cols=214 Identities=29% Similarity=0.397 Sum_probs=174.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999987 999999998876432 135799999999889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.++..... +.. ..+ .+.. .......++.+++.+||.+..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~~~----~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-STW----RSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-hhh----hhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999988643110 000 000 0000 001123456788999998877777654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|++++... +++|++++|+.+++.+++|+|++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999876433 455666888889999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=348.07 Aligned_cols=209 Identities=26% Similarity=0.430 Sum_probs=177.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|+ +|+|.++|.++..... ++.++||+|+..+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999998 9999999998765432 46799999999888999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++..... + +.. . ...+....++++++.+||.+..++.+.+
T Consensus 93 tv~e~v~~~~~~~~-~-~~~----------------~------------~~~~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHR-S-RFD----------------T------------WTETDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhc-c-ccc----------------C------------CCHHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 99999998642110 0 000 0 0011224578899999999988888765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||.|||||+.+|++|||||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999864 3 456777889999999999999999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=329.16 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=177.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP--RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecc
Confidence 56788877663 24699999999999999999999999999999999998653 5899999998642
Q ss_pred ---------hhcccceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001291 924 ---------QETFARISGYCEQNDIHSPFVTVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1106)
Q Consensus 924 ---------~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~ 993 (1106)
....++.++|++|++.+++.+|+.||+.+.. ... ..........+.++++.+++.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 1123457899999998888899999996532 111 1222334456788999999987766653
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 469999999999999999999999999999999999999999999998777999999999987 46778999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 218 ~i~~~~~~~ 226 (242)
T PRK11124 218 HIVEQGDAS 226 (242)
T ss_pred EEEEeCCHH
Confidence 899988754
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=325.98 Aligned_cols=206 Identities=26% Similarity=0.377 Sum_probs=172.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc--cceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP--ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999998 9999999988754322 257999999988888999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.+.....+.. . .+....++.+++.+||+...++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------R------------------------AEARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998765432110 0 00112356788999999888887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +.+++.++|+.+++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999876433 445666778888876 499999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+.+++..
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=323.50 Aligned_cols=194 Identities=27% Similarity=0.349 Sum_probs=163.1
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.... ..++.+||++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP--QSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 99999999999999999999999999999998653 589999999876431 234579999999988888999999987
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
....+. .. .+..++.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1234456889999999987766653 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1033 IVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1033 ~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
.+++.|+++++ .|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999875 4899999999987 47788999999985 6777643
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=327.44 Aligned_cols=205 Identities=20% Similarity=0.353 Sum_probs=173.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-----ccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999999988 999999998875421 1357999999988889
Q ss_pred CCCHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 240 EMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
.+||+||+.|+.. ..+.. . .+....++++++.+||+...|..+.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcChhh
Confidence 9999999988642 11100 0 01123456788999998877777654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++.. . +++++.++|+.+++.++||++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-E-GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 456667788889999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=348.30 Aligned_cols=204 Identities=25% Similarity=0.296 Sum_probs=174.3
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---c----ccceEEEEccCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---T----FARISGYCEQNDI 939 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~g~v~q~~~ 939 (1106)
+...+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.++... . .++.+||++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 344689999999999999999999999999999999998763 589999999876421 1 1346999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 940 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
+++.+||.||+.|....+. ...+..++.+.++++.++|.+..++.+ .+||||||||++|||||+.+|+||||
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998754431 223444567889999999988777664 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
||||+|||+.++..+++.|+++.+ .|+|||++|||++ ++.+.||++++|++ |+++..|+..
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~~ 250 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTPD 250 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCHH
Confidence 999999999999999999999875 4899999999997 57788999999985 7899988754
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=331.71 Aligned_cols=228 Identities=25% Similarity=0.327 Sum_probs=182.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCcEEEECCEEhH
Confidence 56778776653 34699999999999999999999999999999999997653 5899999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.++|++|++..++.+|+.||+.++...... .....+.....++++++.+++.+..+..+ ..||+|
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345699999998877788999999875321100 01112233456788999999987766653 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998777999999999997 57889999999985 6899988
Q ss_pred cCCCc--hhHHHHHHH
Q 001291 1080 PLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1080 ~~~~~--~~~~~~yf~ 1093 (1106)
+..+. ...+.++|+
T Consensus 221 ~~~~~~~~~~~~~~~~ 236 (255)
T PRK11231 221 TPEEVMTPGLLRTVFD 236 (255)
T ss_pred CHHHhcCHHHHHHHhC
Confidence 76542 223445553
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-36 Score=331.53 Aligned_cols=215 Identities=27% Similarity=0.367 Sum_probs=178.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56778877653 3469999999999999999999999999999999999865 35899999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
. ...++.++|++|++.+.+.+|++||+.+..... ....+..+..++++++.+++.+..+..+ .+|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 223456899999988877899999998754221 1122333456789999999987766654 4699999
Q ss_pred HHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 1001 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 1001 rqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
|||++|||||+ .+|++|+|||||+|||+.++..+++.|+++. ++|+|||++||+++ ++...||++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 67899999999987 47778999999985 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|+..+
T Consensus 218 ~i~~~~~~~~ 227 (258)
T PRK13548 218 RLVADGTPAE 227 (258)
T ss_pred EEEeeCCHHH
Confidence 8998887643
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=330.51 Aligned_cols=218 Identities=23% Similarity=0.268 Sum_probs=177.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.++++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367888887763 246999999999999999999999999999999999986542 3589999999
Q ss_pred ccCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~-----~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.++. ...+++.++|++|++.+++.+|+.||+.++...+.. ....+.....++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 123456799999999888889999999876533211 1122334456788999998853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++...||++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999997 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 223 ~-G~i~~~~~~~ 233 (253)
T PRK14267 223 L-GKLIEVGPTR 233 (253)
T ss_pred C-CEEEEeCCHH
Confidence 5 7999998764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=330.37 Aligned_cols=216 Identities=21% Similarity=0.230 Sum_probs=175.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478899987763 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~ 990 (1106)
.++.. ...++.+||++|++..++ .||+||+.++..... .......++.+.++++.+++. +..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 234567999999987774 899999988653321 112233455678889998874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||||||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 35799999999999999999999999999999999999999999999996 4799999999997 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |+++..|+..
T Consensus 224 ~-G~i~~~g~~~ 234 (254)
T PRK14273 224 N-GCIEEESSTD 234 (254)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=328.74 Aligned_cols=204 Identities=24% Similarity=0.354 Sum_probs=169.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC-----CCCCCceeEEEECCccCCCCC-----ccceEEEEcCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-----DPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQH 234 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|.++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999999 777 999999998875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.++ .+||+||+.++....+... . .+....++.+++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~----------~-----------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL----------K-----------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc----------H-----------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8777 8999999998754322100 0 0012345678899999877666
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+. ...|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . ++|++++|+.+++.++||+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 530 134999999999999999999999999999999999999999999998754 3 6677788888999999999
Q ss_pred EEEecCCeEEEEcCHHH
Q 001291 395 IILLSDGQIVYQGPREL 411 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1106)
|++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=340.68 Aligned_cols=218 Identities=22% Similarity=0.390 Sum_probs=176.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------------------Ccc
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------------------VPE 225 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 225 (1106)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++... ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999998 99999999876432 114
Q ss_pred ceEEEEcCCCC-CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHH
Q 001291 226 RTAAYISQHDN-HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1106)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1106)
+.++||+|++. .+...||+||+.|+....+.. ..+....++.+++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~----------------------------------~~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK----------------------------------KSEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHH
Confidence 67999999862 333469999999875432110 0011234667899
Q ss_pred HcCCc-ccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001291 305 VLGLD-ICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 305 ~lgL~-~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1106)
.+||+ ...++.+. .|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|++++|
T Consensus 162 ~~gL~~~~~~~~~~-----~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLERSPF-----GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 45666554 4999999999999999999999999999999999999999999998753 3 456667888
Q ss_pred ChhHHHhhcCeEEEecCCeEEEEcCHHHHH---HHHHhcCCCCCCC
Q 001291 384 PAPETYNLFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKR 426 (1106)
Q Consensus 384 ~~~~~~~~~D~vilL~~G~iv~~G~~~~~~---~~f~~~G~~~p~~ 426 (1106)
+..++.++||+|++|++|++++.|+++++. ..++..|+.+|..
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRV 280 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChH
Confidence 888999999999999999999999999875 3345566665543
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=325.48 Aligned_cols=203 Identities=32% Similarity=0.493 Sum_probs=165.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC---CCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ |+ +|+|.++|.++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3579999999999999999999999999999999999998 76 99999999887543345679999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHH-HHHHcCCcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDY-YLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~ 319 (1106)
+||+||+.|+......... .. ......++. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS---SD----------------------------AIRKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhccccc---ch----------------------------HHHHHHHHHHHHHhhcchhhhcccccC-
Confidence 9999999987653321000 00 000112233 78888998777776655
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hHHHhhcCeEEEe
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPA-PETYNLFDDIILL 398 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~vilL 398 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.++++.+ .+.|+++ ++|.. .++.++||++++|
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~i~~l 217 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVIL-TIHQPRSDLFRLFDRILLL 217 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEE-EecCCCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 3455555 55554 6899999999999
Q ss_pred cCCeEEEEc
Q 001291 399 SDGQIVYQG 407 (1106)
Q Consensus 399 ~~G~iv~~G 407 (1106)
++|+++++|
T Consensus 218 ~~G~i~~~g 226 (226)
T cd03234 218 SSGEIVYSG 226 (226)
T ss_pred eCCEEEecC
Confidence 999999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=329.48 Aligned_cols=204 Identities=25% Similarity=0.353 Sum_probs=172.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-----------CccceEEEEcCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-----------VPERTAAYISQH 234 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----------~~~~~~~yv~Q~ 234 (1106)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999999987 99999999886532 113579999999
Q ss_pred CCCCCCCCHHHHHHHHHHh-cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc
Q 001291 235 DNHIGEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1106)
+.+++.+||+||+.++... .+. . ..+....++.+++.+||+...|
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~~l~~~gl~~~~~ 139 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVKGE--P--------------------------------KEEATARARELLAKVGLAGKET 139 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhcCC--C--------------------------------HHHHHHHHHHHHHHcCCcchhh
Confidence 8888899999999886431 110 0 0011234567889999988777
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
+.+++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +.+|++++|+..++.+++|
T Consensus 140 ~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~tH~~~~~~~~~d 212 (250)
T PRK11264 140 SYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-E-KRTMVIVTHEMSFARDVAD 212 (250)
T ss_pred CChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcC
Confidence 77655 999999999999999999999999999999999999999999998754 3 4556667888999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|++++.|+.+++.
T Consensus 213 ~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 213 RAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=338.75 Aligned_cols=224 Identities=19% Similarity=0.238 Sum_probs=178.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC-c-eeEEEEEEcCcc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-G-YITGDIRISGYP 921 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~-~~~G~i~i~g~~ 921 (1106)
+.++|++..++.+ .+...+|+||||+|++||++||+|+||||||||+++|+|..++ + +.+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 6788888776432 1124699999999999999999999999999999999997642 2 358999999987
Q ss_pred CChh---cc----cceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001291 922 KKQE---TF----ARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1106)
Q Consensus 922 ~~~~---~~----~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g 992 (1106)
+... .. ++.++|++|++. +.|.+|+.+++........ ....++.++.+.++++.++|.+..+.....
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6421 11 236999999984 6788999988765543221 123445567789999999997532211111
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+|||||||||+|||||+.+|++||+||||+|||+.++..++++|+++.+ .|.|||+||||++ .+.+.||++++|+
T Consensus 151 p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~- 228 (326)
T PRK11022 151 PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY- 228 (326)
T ss_pred chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999976 5899999999997 4678899999998
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
+|++++.|+..
T Consensus 229 ~G~ive~g~~~ 239 (326)
T PRK11022 229 AGQVVETGKAH 239 (326)
T ss_pred CCEEEEECCHH
Confidence 47999999754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=344.44 Aligned_cols=205 Identities=20% Similarity=0.300 Sum_probs=175.6
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc----cCCh---h---cc-cceEEEEc
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY----PKKQ---E---TF-ARISGYCE 935 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~----~~~~---~---~~-~~~~g~v~ 935 (1106)
+...+|+|+||+|++||+++|+|+||||||||+++|+|...+ ..|+|.++|. +... . .. ++.++|++
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p--~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV--SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 456799999999999999999999999999999999998763 5899999995 2211 1 12 24699999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001291 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1015 (1106)
Q Consensus 936 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~ 1015 (1106)
|++.+++.+||+||+.|+...+ .....+.+..+.++++.++|.+..+..+ .+||||||||++|||||+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999885433 2334555667899999999988777664 4699999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1016 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1016 illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
||||||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.||++++|++ |+++..|+..+
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~e 251 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPEE 251 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHHH
Confidence 99999999999999999999999999764 899999999997 57889999999985 79999998653
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=331.74 Aligned_cols=221 Identities=26% Similarity=0.349 Sum_probs=180.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEcCcc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 921 (1106)
-+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 367888877653 346999999999999999999999999999999999986542 236999999976
Q ss_pred CCh--------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-----CCCChHHHHHHHHHHHHHcCCCccccccc
Q 001291 922 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-----PEVNSETRKMFIEEVMELVELKPLRQSLV 988 (1106)
Q Consensus 922 ~~~--------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-----~~~~~~~~~~~v~~~l~~~~l~~~~~~~~ 988 (1106)
... ...++.++|++|++.+++.+|+.||+.+......+ .....+..+..++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 12345689999999888889999999875321100 01112334456889999999987666653
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEE
Q 001291 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 989 ~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|.|||++||+++ .+.+.||+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 46999999999999999999999999999999999999999999999975 4899999999997 4778899999
Q ss_pred EEecCCEEEEEecCCC
Q 001291 1068 LMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1068 ~l~~gG~~~~~G~~~~ 1083 (1106)
+|++ |++++.|+..+
T Consensus 225 ~l~~-g~i~~~g~~~~ 239 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQQ 239 (262)
T ss_pred EEEC-CEEEEeCCHHH
Confidence 9985 78999988654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=333.14 Aligned_cols=216 Identities=27% Similarity=0.383 Sum_probs=177.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1106)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35999999999999999999999999999999999999998 9999999998765322 357999999863 6777
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||.|||.++....+.. ..+....++++++.+||++..++.++.
T Consensus 97 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------------------------------REEMVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999999875432210 001123467789999999888888765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++... .+++|++++|+.+++. .||+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999987643 3456666777777776 5999999999
Q ss_pred CeEEEEcCHHHHHH---HHHhcCCCCC
Q 001291 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1106)
Q Consensus 401 G~iv~~G~~~~~~~---~f~~~G~~~p 424 (1106)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444455443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=335.09 Aligned_cols=215 Identities=25% Similarity=0.298 Sum_probs=179.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. ..+.+|+|+||+|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 678888877631 123599999999999999999999999999999999998764 5899999998764
Q ss_pred h---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.+||++|++. .++..||.||+.++.... ....++.++.+.++++.++|.+..+..+ ..||+|
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 233567999999974 556689999998865332 1233444567899999999988777664 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++ ..||++++|++ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999875 899999999987 35 46999999985 789999
Q ss_pred ecCC
Q 001291 1079 GPLG 1082 (1106)
Q Consensus 1079 G~~~ 1082 (1106)
|+..
T Consensus 222 g~~~ 225 (279)
T PRK13635 222 GTPE 225 (279)
T ss_pred CCHH
Confidence 8754
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=340.74 Aligned_cols=208 Identities=22% Similarity=0.246 Sum_probs=176.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCC--C
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHD--N 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1106)
..+|+|||++|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 57999999999999999999999999999999999999987 9999999998865431 35799999996 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
++|.+||.||+.+..+....+ +. ..+....++.+++.+||. ...++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~--------~~------------------------~~~~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPK--------LS------------------------RQEVKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccC--------CC------------------------HHHHHHHHHHHHHHcCCChHHhcCC
Confidence 788999999999875432100 00 011223466789999994 466776
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ |||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+. .+.+++.++|+...+.+++|+|
T Consensus 159 p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 PHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 655 9999999999999999999999999999999999999999999988653 3567777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=322.41 Aligned_cols=195 Identities=27% Similarity=0.381 Sum_probs=167.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-CccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-VPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999987 99999999876532 123579999999888899999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999886532210 012356678999998888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45566678888999999999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.69 Aligned_cols=220 Identities=22% Similarity=0.282 Sum_probs=174.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC---CCCceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~---~~~~~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|. .++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 467788887653 24699999999999999999999999999999999995 22212479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ...++.++|++|++.+++ .|+.||+.++...+. ....+...+.++++++.+++.+........ .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87642 233557999999988776 699999987653331 111223445678899999986421111111 134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++.+.||++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 699999999999999999999999999999999999999999999985 5899999999997 47788999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 223 ~~~~~~~~ 230 (250)
T PRK14245 223 MVEYDDTK 230 (250)
T ss_pred EEEECCHH
Confidence 99998754
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=335.60 Aligned_cols=204 Identities=21% Similarity=0.235 Sum_probs=150.0
Q ss_pred CceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 841 ~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
|-.+.+.+|.+.++- +.-+++.++++.++.-...+++|+||+||||+++++.|...+ ..|.+.+.+
T Consensus 360 ~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP- 425 (582)
T ss_pred CCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc-
Confidence 335777787766541 111688999999999999999999999999999999986542 356555543
Q ss_pred cCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHH
Q 001291 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 921 ~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~G 999 (1106)
+++++|-.|...-+-.+.|.+-- +-...+ +.. .++.+++.+..+||.. ++... ..+||||
T Consensus 426 -------r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~--pG~----~~ee~r~hl~~~Gl~g~la~~s-----i~~LSGG 486 (582)
T KOG0062|consen 426 -------RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF--PGK----TEEEIRRHLGSFGLSGELALQS-----IASLSGG 486 (582)
T ss_pred -------cceecchhHhhhhHHHHHhHHHH-HHHHhC--CCC----CHHHHHHHHHhcCCCchhhhcc-----ccccCCc
Confidence 45689999976544334443322 212222 111 2334567888999864 33222 3569999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||-||++|.....+|.+|+|||||+.||..+-..+-++|++. +..||+||||.++ +-..|+++.+.++|.-.-..|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999876 4689999999875 777899999998754334455
Q ss_pred cC
Q 001291 1080 PL 1081 (1106)
Q Consensus 1080 ~~ 1081 (1106)
..
T Consensus 563 ~~ 564 (582)
T KOG0062|consen 563 GI 564 (582)
T ss_pred cH
Confidence 43
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=333.05 Aligned_cols=215 Identities=27% Similarity=0.357 Sum_probs=177.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +++.+|+|+||+|++||++||+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP--TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEECc
Confidence 46778887663 123599999999999999999999999999999999997653 4899999998763
Q ss_pred h-----hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 Q-----ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~-----~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
. ...++.++|++|++. .....|+.||+.++.... ....++....+.++++.++|.++.+..+ .+||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 334479999998764321 1223344556889999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999987 47778999999985 78999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 218 ~g~~~ 222 (275)
T PRK13639 218 EGTPK 222 (275)
T ss_pred eCCHH
Confidence 88765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.14 Aligned_cols=218 Identities=20% Similarity=0.250 Sum_probs=177.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 367888887763 246999999999999999999999999999999999976432 2589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.+||++|++.+++..|++||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999888888999999987654321 1123344556788999998842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 346999999999999999999999999999999999999999999999864 689999999987 4778899999997
Q ss_pred c-----CCEEEEEecCC
Q 001291 1071 R-----GGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~-----gG~~~~~G~~~ 1082 (1106)
+ .|++++.|+..
T Consensus 222 ~~~~~~~g~i~~~~~~~ 238 (258)
T PRK14241 222 LEATGKPGRLVEIDDTE 238 (258)
T ss_pred cccCCCCceEEecCCHH
Confidence 3 58999998754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.17 Aligned_cols=223 Identities=21% Similarity=0.239 Sum_probs=178.7
Q ss_pred CCceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEE
Q 001291 840 EPYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIR 916 (1106)
Q Consensus 840 ~~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~ 916 (1106)
.+..+.++|++++++ .+++|+|+||+|++||++||+|+||||||||+++|+|...+ .+.+|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 344689999988763 24699999999999999999999999999999999997642 13589999
Q ss_pred EcCccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCC
Q 001291 917 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991 (1106)
Q Consensus 917 i~g~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~ 991 (1106)
++|.+... ...++.++|++|++.+++ .|++||+.++.... .....+..+..+.++++.+++.+..+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~- 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDLHK- 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhhcC-
Confidence 99987632 123557999999987776 69999998764321 1112334456678899999985321111111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. ++.|||++||+++ ++.+.||++++|+
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~- 236 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFY- 236 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEE-
Confidence 235799999999999999999999999999999999999999999999985 4799999999997 5778999999997
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
+|++++.|+..
T Consensus 237 ~G~i~~~g~~~ 247 (267)
T PRK14237 237 LGDLIEYDKTR 247 (267)
T ss_pred CCEEEEeCCHH
Confidence 47999998865
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=330.61 Aligned_cols=213 Identities=27% Similarity=0.362 Sum_probs=173.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999987 999999998875432 145799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.++...... .. ... .+. ...+....++.+++.+||.+..+..+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~---~~~------~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TW---RSL------LGR---------------FSEEDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhccccccc--ch---hhh------hcc---------------ccHHHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999875321100 00 000 000 0001123466789999998877777654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.++||+|++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 9999999999999999999999999999999999999999999987543 3456666888889999999999999
Q ss_pred cCCeEEEEcCHHHH
Q 001291 399 SDGQIVYQGPRELV 412 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1106)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=333.06 Aligned_cols=207 Identities=26% Similarity=0.354 Sum_probs=173.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC--C---CccceEEEEcCCCC-CC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE--F---VPERTAAYISQHDN-HI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 238 (1106)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999998 9999999998741 1 12357999999863 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
...||+||+.++....+.. . .+....++++++.+||.+..++.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhCCccc
Confidence 5689999999865432210 0 01123467789999999888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++..+||+|++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE-LGLTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999987653 2456666789999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=331.45 Aligned_cols=219 Identities=27% Similarity=0.374 Sum_probs=179.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP--SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEeh
Confidence 478888887653 24699999999999999999999999999999999998653 579999999765
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ..+++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ .+|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23455799999998888889999999875321110 00112233456789999999987666653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 57788999999985 78999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.|+..+
T Consensus 229 ~~~~~~ 234 (265)
T PRK10575 229 QGTPAE 234 (265)
T ss_pred ecCHHH
Confidence 887653
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=331.60 Aligned_cols=219 Identities=22% Similarity=0.296 Sum_probs=180.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 578889988764 24699999999999999999999999999999999998653 479999999875
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.++|++|++..++..|++||+.++.....+ .....+..+..++++++.+++.+..++.+ ..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCh
Confidence 32 22345699999999888889999999775321110 00112233456789999999987766653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.||++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 57889999999985 78999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.|+..+
T Consensus 225 ~g~~~~ 230 (265)
T PRK10253 225 QGAPKE 230 (265)
T ss_pred eCCHHH
Confidence 988654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-36 Score=315.41 Aligned_cols=190 Identities=59% Similarity=0.939 Sum_probs=160.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++|+++.++.+ ..++++|+|+||+|++|++++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 46788888877421 012469999999999999999999999999999999999643224689999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ...++.++|++|++.+++.+|++||+.+.... + +||+||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhH
Confidence 4 33456799999998888889999999764210 0 39999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|++|||||+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++...||++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998633567899999998658998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=337.67 Aligned_cols=226 Identities=25% Similarity=0.279 Sum_probs=181.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+..+|++++++...... ...+...+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478888887775321100 001234799999999999999999999999999999999998653 489999999876
Q ss_pred Ch------hcccceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 001291 923 KQ------ETFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGV 993 (1106)
Q Consensus 923 ~~------~~~~~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~ 993 (1106)
.. ..+++.++|++|++ .+.+.+|+.+++.+..... .....+..++.+.++++.++|.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 12456799999998 4678899999987654332 12334455667899999999963 44544 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+.+|+|||+||||++||..++..|+++|+++.++ |.|||+||||++ .+.+.||++++|++
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 479999999999999999999999999999999999999999999999764 999999999997 46678999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 7999999754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-36 Score=317.93 Aligned_cols=180 Identities=43% Similarity=0.745 Sum_probs=155.8
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC---CCCCceeEEEECCccCCCC--CccceEEEEcCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEF--VPERTAAYISQHDNH 237 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~ 237 (1106)
..+.+|+|+|+.+++|++++|+||||||||||+++|+|.++ |+ +|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34579999999999999999999999999999999999998 66 99999999987543 224679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.++.+.. .+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~---------------------------------------------------------~~~~~- 116 (202)
T cd03233 95 FPTLTVRETLDFALRCK---------------------------------------------------------GNEFV- 116 (202)
T ss_pred CCCCcHHHHHhhhhhhc---------------------------------------------------------cccch-
Confidence 99999999998764210 12223
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++....+.++++++||+.+++.+++|++++
T Consensus 117 ----~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 117 ----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 3499999999999999999999999999999999999999999999876543567777788888899999999999
Q ss_pred ecCCeEEEEc
Q 001291 398 LSDGQIVYQG 407 (1106)
Q Consensus 398 L~~G~iv~~G 407 (1106)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=322.13 Aligned_cols=196 Identities=23% Similarity=0.357 Sum_probs=162.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999997 9999999988754322 1469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.+........ . .+....+..+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------V------------------------KEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCChh
Confidence 88999999999865422110 0 0011235678999999887787776
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
. |||||||||+||++|+.+|++|+|||||+|||..++..+.+.|+++.+..+ .+|+.++|+..++. .+|+|++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELN-TSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHh-hcCEEEE
Confidence 5 999999999999999999999999999999999999999999998765334 45566677777774 5799999
Q ss_pred ecCCeEE
Q 001291 398 LSDGQIV 404 (1106)
Q Consensus 398 L~~G~iv 404 (1106)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=333.25 Aligned_cols=214 Identities=24% Similarity=0.371 Sum_probs=175.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP--QKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CccEEEECCEEcc
Confidence 45677777653 23599999999999999999999999999999999997663 5899999998753
Q ss_pred h-----hcccceEEEEccCCCC-CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 Q-----ETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~-----~~~~~~~g~v~q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
. ...++.+||++|++.. ....|+.||+.+....+ ....+.....++++++.+++.+..+..+ .+||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCC
Confidence 1 1234579999998753 34468999998764322 1223334456788999999987766553 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.||++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999998877999999999987 47788999999985 78999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 217 ~g~~~ 221 (271)
T PRK13638 217 HGAPG 221 (271)
T ss_pred eCCHH
Confidence 88754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=322.63 Aligned_cols=213 Identities=25% Similarity=0.364 Sum_probs=174.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++.. .....+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 47888988776421 0113599999999999999999999999999999999998653 589999999875
Q ss_pred Chhc------c-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 923 KQET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 923 ~~~~------~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
.... . ++.++|++|++.+++.+|+.||+.+....+ .......++.+.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4211 1 246999999998888899999998764332 1223344567889999999987666653 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++|||++ .+ +.||++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999987 34 56999999985 67
Q ss_pred EEE
Q 001291 1075 EVY 1077 (1106)
Q Consensus 1075 ~~~ 1077 (1106)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=339.07 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=183.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC--ceeEEEEEEcCcc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYP 921 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~ 921 (1106)
+.++|++.+|+.+ .+...+|+||||+|++||++||+|+||||||||+++|+|..++ .+..|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788888776432 1235699999999999999999999999999999999997642 2457999999987
Q ss_pred CCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCC---CChHHHHHHHHHHHHHcCCCcccccccC
Q 001291 922 KKQ---ET----FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPE---VNSETRKMFIEEVMELVELKPLRQSLVG 989 (1106)
Q Consensus 922 ~~~---~~----~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~ 989 (1106)
+.. .. .++.++|++|++. +.+.+||.+++.+......... ......++.+.++++.++|.+..+..-.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 11 1246999999986 4677899999875422110000 1112345568899999999753221111
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEE
Q 001291 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFL 1068 (1106)
Q Consensus 990 ~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~ 1068 (1106)
. +.+|||||||||+|||||+.+|+||||||||+|||+.++..++++|+++.++ |.|||+||||++ .+.+.||++++
T Consensus 155 ~--p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~v 231 (330)
T PRK15093 155 F--PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINV 231 (330)
T ss_pred C--chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEE
Confidence 1 3479999999999999999999999999999999999999999999999864 899999999997 47788999999
Q ss_pred EecCCEEEEEecCCCc----h-hHHHHHHHhCCC
Q 001291 1069 MKRGGREVYVGPLGHH----S-CHLISYFEVCPD 1097 (1106)
Q Consensus 1069 l~~gG~~~~~G~~~~~----~-~~~~~yf~~~~g 1097 (1106)
|++ |++++.|+..+. . ...-.|++++|.
T Consensus 232 m~~-G~ive~g~~~~i~~~p~~~y~~~ll~~~~~ 264 (330)
T PRK15093 232 LYC-GQTVETAPSKELVTTPHHPYTQALIRAIPD 264 (330)
T ss_pred EEC-CEEEEECCHHHHHhCCCCHHHHHHHHhCCc
Confidence 984 799999975431 1 112346677664
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=366.40 Aligned_cols=209 Identities=29% Similarity=0.383 Sum_probs=176.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++|+||+|+|+. +++++|+|+||+|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.++
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEc
Confidence 6899999999852 134699999999999999999999999999999999998764 589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~g 992 (1106)
++ ..+++.+|||+|++.+++ -|++||+.++.. . .++.++++++.+++.+..+ ..++..|
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~~------~----~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGAP------L----TLDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCCC------C----CHHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 54 456788999999998875 699999987521 1 1344778888888876543 3344333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|++||+++ ..+.||+|++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 569999999999999999999999999999999999999999999876 589999999986 4578999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 660 G~iv~~G~~~ 669 (686)
T TIGR03797 660 GRVVQQGTYD 669 (686)
T ss_pred CEEEEECCHH
Confidence 7999999854
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=328.72 Aligned_cols=217 Identities=20% Similarity=0.246 Sum_probs=176.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--C-ceeEEEEEEc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRIS 918 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~ 918 (1106)
..+.++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 3578899988763 2369999999999999999999999999999999999753 1 1358999999
Q ss_pred CccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccC
Q 001291 919 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVG 989 (1106)
Q Consensus 919 g~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~ 989 (1106)
|.+... ...++.++|++|++.+++ .|++||+.+...... ....+..+++++++++.+++.+ ..+..
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 987531 234567999999988776 899999987643221 1223344456889999999843 23332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 990 ~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 34699999999999999999999999999999999999999999999986 4789999999987 477889999999
Q ss_pred ecCCEEEEEecCC
Q 001291 1070 KRGGREVYVGPLG 1082 (1106)
Q Consensus 1070 ~~gG~~~~~G~~~ 1082 (1106)
++ |+++..|+..
T Consensus 229 ~~-G~i~~~g~~~ 240 (260)
T PRK10744 229 YL-GELIEFGNTD 240 (260)
T ss_pred EC-CEEEEeCCHH
Confidence 85 7899988754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-36 Score=320.53 Aligned_cols=198 Identities=23% Similarity=0.295 Sum_probs=166.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+++|+||++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 35799999999999999999999999999999998763 48999999987643 2245679999999988888999999
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+.+....+. . .....+..++++++.+++.+..++.+ .+||+|||||++|||||+.+|++|+|||||+|||+.
T Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 976532211 1 11223456788999999987776653 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
++..+++.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999987 46778999999974 78988764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=327.16 Aligned_cols=201 Identities=25% Similarity=0.367 Sum_probs=169.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999999998 99999999887542 34689999998888899999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.++....+.. . .+....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------K------------------------MQRLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998865432110 0 00122466789999998877777655 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec--CCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 402 (1106)
||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.... +++|+.++|+..++..+||+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999875433 4556667888999999999999998 599
Q ss_pred EEEEcCHH
Q 001291 403 IVYQGPRE 410 (1106)
Q Consensus 403 iv~~G~~~ 410 (1106)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99987653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=333.57 Aligned_cols=219 Identities=24% Similarity=0.323 Sum_probs=175.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++... ...+++|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67788887764210 0013599999999999999999999999999999999998653 5899999998753
Q ss_pred h-------hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~ 994 (1106)
. ...++.++|++|++. .....|++||+.|..... ....+..++.++++++.+++.+ ..+..+ .
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2 224567999999863 223469999998764322 1223344456788999999963 445543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 222 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GK 222 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CE
Confidence 69999999999999999999999999999999999999999999999777999999999987 47788999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (280)
T PRK13649 223 LVLSGKPK 230 (280)
T ss_pred EEEeCCHH
Confidence 99888754
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=321.65 Aligned_cols=192 Identities=28% Similarity=0.355 Sum_probs=162.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCC-CCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDN-HIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999998 9999999988754223467999999863 3557899
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.++....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELDA--------------------------------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcCc--------------------------------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 9999886432100 012356789999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-Q-GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3 45566678888899999999999999997
Q ss_pred E
Q 001291 404 V 404 (1106)
Q Consensus 404 v 404 (1106)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=325.50 Aligned_cols=236 Identities=21% Similarity=0.241 Sum_probs=183.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 467888887763 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.++.. ..+++.++|++|++.+++..|+.||+.++..... .......++.++++++.+++.......... .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87532 2345679999999988888999999987543221 112223345678889999985421111111 135
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+ +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 6999999999999999999999999999999999999999999999975 689999999997 5778999999997 479
Q ss_pred EEEEecCCCc-----hhHHHHHHHhCCC
Q 001291 1075 EVYVGPLGHH-----SCHLISYFEVCPD 1097 (1106)
Q Consensus 1075 ~~~~G~~~~~-----~~~~~~yf~~~~g 1097 (1106)
+++.|+..+. ....-+||...+|
T Consensus 225 i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (252)
T PRK14256 225 LVECGETKKIFTTPEKKQTEDYITGRFG 252 (252)
T ss_pred EEEeCCHHHHHhCCCcHHHHHHHhhccC
Confidence 9999875421 1234567765443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=325.74 Aligned_cols=212 Identities=26% Similarity=0.317 Sum_probs=172.5
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++++|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (230)
T TIGR03410 2 EVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV--KSGSIRLDGEDITK 66 (230)
T ss_pred EEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECCC
Confidence 4667776553 34699999999999999999999999999999999998653 58999999987542
Q ss_pred h----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHH
Q 001291 925 E----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 925 ~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ..++.++|++|++.+++.+|+.||+.+....+. .. ..+..+++++.++ +.+..+.. +.+||+|
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 135 (230)
T TIGR03410 67 LPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGG 135 (230)
T ss_pred CCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHH
Confidence 1 124569999999988888999999987643321 11 1223567777776 45545554 3469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++...||++++|++ |++++.
T Consensus 136 ~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~ 213 (230)
T TIGR03410 136 QQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVAS 213 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999998764 899999999987 47778999999975 789999
Q ss_pred ecCCCc
Q 001291 1079 GPLGHH 1084 (1106)
Q Consensus 1079 G~~~~~ 1084 (1106)
|+..+.
T Consensus 214 ~~~~~~ 219 (230)
T TIGR03410 214 GAGDEL 219 (230)
T ss_pred CCHHHc
Confidence 886543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=347.12 Aligned_cols=200 Identities=30% Similarity=0.453 Sum_probs=165.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+... +++++||+|++.+| .-|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf-~gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF-AGT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCccc-ccc
Confidence 7999999999999999999999999999999999999998 9999999999877654 68999999998655 469
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC------cccccccc
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL------DICADTMV 316 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (1106)
+||||.++.... + ++.+.++++.-|| +...||.+
T Consensus 411 ireNi~l~~~~~-------------------------s---------------~e~i~~al~~a~l~~~v~~p~GLdt~i 450 (559)
T COG4988 411 IRENILLARPDA-------------------------S---------------DEEIIAALDQAGLLEFVPKPDGLDTVI 450 (559)
T ss_pred HHHHhhccCCcC-------------------------C---------------HHHHHHHHHHhcHHHhhcCCCcccchh
Confidence 999999974211 0 0111222333332 45678999
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
|+ .++||||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ ++|+++ ++|.. +...-+|+|+
T Consensus 451 ge-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHrl-~~~~~~D~I~ 525 (559)
T COG4988 451 GE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHRL-EDAADADRIV 525 (559)
T ss_pred cc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcCh-HHHhcCCEEE
Confidence 95 6788999999999999999999999999999999999999999999998764 355554 55544 4556789999
Q ss_pred EecCCeEEEEcCHHHHHH
Q 001291 397 LLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1106)
+|++|+++.+|.++++.+
T Consensus 526 vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 526 VLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCceeccCCHHHHhh
Confidence 999999999999999864
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=337.50 Aligned_cols=225 Identities=20% Similarity=0.294 Sum_probs=180.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEcCcc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 921 (1106)
.+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|..++. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47888888766431 12356999999999999999999999999999999999976532 237999999987
Q ss_pred CCh---hc---cc-ceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCC
Q 001291 922 KKQ---ET---FA-RISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992 (1106)
Q Consensus 922 ~~~---~~---~~-~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g 992 (1106)
+.. .. ++ +.++|++|++ .+.+.+|+.+++.+...... ....++..+++.++++.++|.+..+.....
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~-- 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRMKMY-- 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHhcCC--
Confidence 642 11 22 4699999998 56788999999876543321 223444556788999999997533221112
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+||||||||++|||||+.+|+|||+||||++||+.++..|+++|+++.++ |.|||+||||++ .+.+.||++++|+
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 3579999999999999999999999999999999999999999999999765 899999999997 4667899999997
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 57999999754
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=325.16 Aligned_cols=225 Identities=21% Similarity=0.248 Sum_probs=180.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. . ..||||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP--ASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCeecC
Confidence 467788877641 1 1389999999999999999999999999999998653 5799999998754
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.++|++|++.+++.+|+.||+.+..... .. ..+..+..++++++.+++.+..++.+ ..||+||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LK-LNAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cC-CCHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12356999999998888899999997753211 11 12234556889999999988777764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++||||++.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 899999999997 47788999999985 789999876
Q ss_pred CC--chhHHHHHHHhC
Q 001291 1082 GH--HSCHLISYFEVC 1095 (1106)
Q Consensus 1082 ~~--~~~~~~~yf~~~ 1095 (1106)
.+ ....+.++|..|
T Consensus 215 ~~~~~~~~~~~~~~~~ 230 (232)
T PRK10771 215 DELLSGKASASALLGI 230 (232)
T ss_pred HHHHhChhHHHHhhcc
Confidence 53 223455666443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=336.59 Aligned_cols=208 Identities=20% Similarity=0.236 Sum_probs=176.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCC--C
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHD--N 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~ 236 (1106)
+.+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999987 999999999876542 135799999997 5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
+.+.+||.+++.+..+.... .. ..+....+.++++.+||+ ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LS------------------------AAERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CC------------------------HHHHHHHHHHHHHHCCCChHHhcCC
Confidence 88999999999876543210 00 011223567889999996 466777
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+..++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 655 9999999999999999999999999999999999999999999987653 3566777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.03 Aligned_cols=224 Identities=23% Similarity=0.296 Sum_probs=178.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.....+ ..+++.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP--AQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 56788887764210000 01235799999999999999999999999999999999998663 5899999998754
Q ss_pred hh------cccceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 QE------TFARISGYCEQND--IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
.. ..++.++|++|++ .+.+..|++||+.+...... .......++.+.++++.+++. ...+..+ .
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKLP-----R 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCCh-----h
Confidence 21 1345799999997 35567899999976543211 122233445688999999995 5555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ .+.+.||++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 69999999999999999999999999999999999999999999998765 899999999997 47778999999984 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 228 ~i~~~g~~~ 236 (265)
T TIGR02769 228 QIVEECDVA 236 (265)
T ss_pred EEEEECCHH
Confidence 999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=322.35 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=164.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCC--CC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHD--NH 237 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999998 999999999876532 235799999997 46
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMV 316 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1106)
++.+||+||+.+.....+.... + .......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~----------~----------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK----------K----------------------EARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH----------H----------------------HHHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999986543211000 0 00011124678889995 5667766
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++. ..+.+|+.++|+..++..++|+|+
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHhcCeEE
Confidence 55 999999999999999999999999999999999999999999998764 324566667888888989999999
Q ss_pred EecCCeEEEEc
Q 001291 397 LLSDGQIVYQG 407 (1106)
Q Consensus 397 lL~~G~iv~~G 407 (1106)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=323.38 Aligned_cols=212 Identities=27% Similarity=0.395 Sum_probs=177.7
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ .+.+++|+||+|++|++++|+|+||||||||+++|+|..++ ..|.|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4677776653 24699999999999999999999999999999999998763 47999999987643
Q ss_pred h-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 925 ~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
. ..++.+||++|++..++.+|+.||+.+....+. .........++++++.+++.+..+..+ .+||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 1 124578999999988888999999987654321 223334556788999999988777653 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
++|||||+.+|++|+|||||+|||+.++..++++|+++.++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999998764 899999999987 47788999999985 789888764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-36 Score=320.25 Aligned_cols=194 Identities=29% Similarity=0.416 Sum_probs=164.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 35999999999999999999999999999999999999987 999999999876432 135799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.++....+.. .......++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------------------------------EREIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 8999999999875432210 000123456789999998877777765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.++||++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-R-GTTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999998753 3 456666788889999999999999
Q ss_pred cCCe
Q 001291 399 SDGQ 402 (1106)
Q Consensus 399 ~~G~ 402 (1106)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=342.93 Aligned_cols=212 Identities=26% Similarity=0.421 Sum_probs=177.2
Q ss_pred CceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 841 ~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
+.+++|+||+++|. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|.|||+
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 34699999999885 24469999999999999999999999999999999999765 4799999999
Q ss_pred cCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCC
Q 001291 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGL 990 (1106)
Q Consensus 921 ~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~ 990 (1106)
+++. +.+|+.+|||||+..++. -||.+|+.|+. .... .+++-++.+..++.+...+ .+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas----~eeV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSAS----DEEVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcC----HHHHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8754 567889999999887764 69999999873 2222 2345667777777654333 3454
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
.|- .|||||||||+||||++.+|+|+++|||||+||.++.+.+++.+.+. ..|+|+|+|.|+++ ..+.||+|++|+
T Consensus 484 rG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDKIIVLD 559 (591)
T ss_pred ccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCEEEEEE
Confidence 443 59999999999999999999999999999999999999999999984 46899999999985 578999999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++.+.|+..
T Consensus 560 n-G~v~e~gth~ 570 (591)
T KOG0057|consen 560 N-GTVKEYGTHS 570 (591)
T ss_pred C-CeeEEeccHH
Confidence 6 6899988754
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=327.09 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=175.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC---CceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g 919 (1106)
.+.++|++++++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +.+.+|+|.++|
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14242 6 KMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDG 72 (253)
T ss_pred EEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECC
Confidence 578899987763 2359999999999999999999999999999999999642 113589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ...++.++|++|++..++ .|+.||+.++...+. ....+..++.++++++.+++.+........ .+.
T Consensus 73 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 148 (253)
T PRK14242 73 ENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SAL 148 (253)
T ss_pred EEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Ccc
Confidence 87532 133567999999988777 599999988653321 112233445678899999985421111111 134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||||||||++|||||+.+|+||||||||+|||+.++..+++.|+++. +|+|||++||+++ ++.+.||++++|++ |+
T Consensus 149 ~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14242 149 GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GK 225 (253)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-CE
Confidence 699999999999999999999999999999999999999999999985 4799999999997 47788999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 226 i~~~g~~~ 233 (253)
T PRK14242 226 LIEVGPTE 233 (253)
T ss_pred EEEeCCHH
Confidence 99888754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-36 Score=329.10 Aligned_cols=218 Identities=28% Similarity=0.389 Sum_probs=177.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP--DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCEEcc
Confidence 45677776653 34699999999999999999999999999999999997653 4799999998754
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ...++.++|++|++...+..|+.||+.++...... .........+.+.++++.+++.+..+..+ ..||+|
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 22345689999998777788999999875321100 00112233456789999999987766653 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|++++|||||+|||+.+...+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 57789999999985 6899988
Q ss_pred cCCC
Q 001291 1080 PLGH 1083 (1106)
Q Consensus 1080 ~~~~ 1083 (1106)
+..+
T Consensus 220 ~~~~ 223 (256)
T TIGR03873 220 PPRE 223 (256)
T ss_pred CHHH
Confidence 7653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=321.39 Aligned_cols=196 Identities=30% Similarity=0.446 Sum_probs=167.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1106)
++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 6999999999999 99999999999999999999999998 999999998875432 24679999999988999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+.....+.. . .+....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (211)
T cd03264 90 REFLDYIAWLKGIP----------S------------------------KEVKARVDEVLELVNLGDRAKKKIGS----- 130 (211)
T ss_pred HHHHHHHHHHhCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHhCchhh-----
Confidence 99999865432210 0 00122456789999999888887765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.. + ++++.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998753 3 5677788999999999999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=319.75 Aligned_cols=203 Identities=26% Similarity=0.319 Sum_probs=182.7
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh------hcc-cceEEEEccCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ------ETF-ARISGYCEQNDIHS 941 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~-~~~~g~v~q~~~~~ 941 (1106)
..-++|+||+|+.||++.|||-||||||||+++|.++..+ ..|+|.++|.++.. ..+ ++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep--t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP--TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC--CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 4568999999999999999999999999999999998774 58999999987632 123 35699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
|..||.||+.|+..++ ..+++++++++.++++.+||..+.++.+ ++|||||||||.|||||+.+|+||||||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4677889999999999999999998874 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|+|+|||--+..+++-|.++.++ .+|||+||||++ +.+.+-|||.+|+ +|+++..|++.+
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~e 251 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPEE 251 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHHH
Confidence 99999999999999999988644 899999999998 6889999999997 689999999875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=336.32 Aligned_cols=214 Identities=21% Similarity=0.242 Sum_probs=175.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCC--
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHD-- 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1106)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+...+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742238999999998765432 14799999997
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccc
Q 001291 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1106)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1106)
.+.+.+||.+++.+.....+. .. ..+....+..+++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MS------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CC------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 678999999999876543210 00 01112346677899999754322
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
. +.....|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 1 2334569999999999999999999999999999999999999999999988653 3567777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|++++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=325.64 Aligned_cols=220 Identities=20% Similarity=0.255 Sum_probs=174.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC-ceeEEEEEEcCccC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPK 922 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~ 922 (1106)
+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56777877663 24699999999999999999999999999999999997532 24589999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.. ...++.++|++|++.+++ .|++||+.++...+.. .......++.++++++.+++.+........ .+.+||+|
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLKQ-NALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhcC-CcccCCHH
Confidence 43 234567999999988776 6999999886543311 011233445678899999995321111111 13469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999987 47788999999985 7999988
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
+..
T Consensus 224 ~~~ 226 (246)
T PRK14269 224 ESK 226 (246)
T ss_pred CHH
Confidence 754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.61 Aligned_cols=205 Identities=26% Similarity=0.359 Sum_probs=170.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35999999999999999999999999999999999999997 999999999875432 2457999999863 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++....+.. ..+....++++++.+||++..++.++.
T Consensus 99 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------------------------------PKKMKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCCccc--
Confidence 99999999865422110 001123467789999999888887765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|+++.. .++++|++++|+..++. .+|+|++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRK-TRKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998764 33355555666767764 7999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=327.20 Aligned_cols=194 Identities=22% Similarity=0.303 Sum_probs=166.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5999999999999999999999999999999999999998 9999999976542 2467999999988888899999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.++... . ....++.+++.+||.+..+..+++ ||
T Consensus 101 nl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 99875210 0 011345678899998877777655 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||+||++|+.+|+++||||||+|||+.++..+.+.|+++.... +.+|++++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999875433 4556667888889999999999999999999
Q ss_pred EcCHH
Q 001291 406 QGPRE 410 (1106)
Q Consensus 406 ~G~~~ 410 (1106)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=330.49 Aligned_cols=206 Identities=27% Similarity=0.354 Sum_probs=172.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC----ccceEEEEcCCCC-CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----PERTAAYISQHDN-HIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999998 999999998875421 2467999999863 344
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
..||.||+.|+....+.. ..+....++++++.+||+...++.++.
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------------------------------PEEIRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------------------------------HHHHHHHHHHHHHHCCCHhHhhCCccc-
Confidence 579999999875432210 001123467889999999988888765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+..++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 9999999999999999999999999999999999999999999987643 34556666777778765 99999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=336.22 Aligned_cols=211 Identities=20% Similarity=0.229 Sum_probs=173.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCC-ceeEEEECCccCCCCCc-------cceEEEEcCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLK-VSGRVTYNGHNMDEFVP-------ERTAAYISQHD- 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~-~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1106)
.++|+||||+|++||+++|+||||||||||+++|+|++++... .+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5699999999999999999999999999999999999874221 38999999998765432 13699999987
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc---c
Q 001291 236 -NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI---C 311 (1106)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~ 311 (1106)
.+.|.+||.+++......... . ...+....++.+++.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~------------------------~~~~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------G------------------------NKKTRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------C------------------------CHHHHHHHHHHHHHHCCCCChHHH
Confidence 478999999998776543210 0 00112245677899999974 3
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1106)
.+..++ .|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++... .+.+++.++|+...+.++
T Consensus 147 l~~~p~-----~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~-~g~til~iTHdl~~~~~~ 220 (326)
T PRK11022 147 LDVYPH-----QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQK-ENMALVLITHDLALVAEA 220 (326)
T ss_pred HhCCch-----hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHh
Confidence 455554 49999999999999999999999999999999999999999999998653 356677789999999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHHH
Q 001291 392 FDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~~ 414 (1106)
+|+|++|++|++++.|+.+++.+
T Consensus 221 adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999998853
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=320.44 Aligned_cols=209 Identities=24% Similarity=0.358 Sum_probs=172.2
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC-C--ceeEEEEEEcCccCCh---h---cc-cceEEEEccC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G--GYITGDIRISGYPKKQ---E---TF-ARISGYCEQN 937 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~-~--~~~~G~i~i~g~~~~~---~---~~-~~~~g~v~q~ 937 (1106)
...+++||||++++||++||+|.|||||||+.++|+|..+ + ....|+|.++|.++.. . .+ -+.+++++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3579999999999999999999999999999999999765 2 3567899999986532 2 22 2469999999
Q ss_pred CC--CCCCCCHHHHHHHhhhhcCCCCC-ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 938 DI--HSPFVTVYESLFYSAWLRLPPEV-NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 938 ~~--~~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
+. +.|.+||.+-+.-....+. .. ..++..+.+.++|+.+++.+-....... +.+|||||||||.||.||+.+|
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y--PhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERRLKSY--PHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHHHhhC--CcccCCcHHHHHHHHHHHhCCC
Confidence 86 4577888776644333221 12 3455677889999999998754333333 3579999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1015 SIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1015 ~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
++||.||||++||...+++|+++|+++.+ .|.|+|+||||+.. +.+.||||+||+ .|++|+.|+..
T Consensus 173 ~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 173 KLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred CEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEE-CcEEEEeCCHH
Confidence 99999999999999999999999999986 69999999999985 889999999998 58999999865
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=324.10 Aligned_cols=203 Identities=25% Similarity=0.405 Sum_probs=168.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999998 9999999988765432 3569999999888999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 319 (1106)
+||+||+.++..... . + +....++.+++.+ ++.+..++.++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D--------------------------------QFQERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h-h--------------------------------HHHHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999988642110 0 0 0011234456666 466656665544
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-Q-GMTIFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHhhCCEEEEEe
Confidence 999999999999999999999999999999999999999999998754 3 4455667888899999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998774
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=315.44 Aligned_cols=196 Identities=31% Similarity=0.590 Sum_probs=161.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-eeEEEEEEcCcc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YITGDIRISGYP 921 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~~~G~i~i~g~~ 921 (1106)
.+.|+|++|.|+.+. +++.+|+|+||+|++||++||+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 578999999997541 3457999999999999999999999999999999999976532 568999999987
Q ss_pred CCh--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 922 KKQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 922 ~~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 643 234567999999998888899999997653210 1222 2469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||++|||||+.+|++|||||||+|||+.+++.+++.|+++.++ +.|+|+++|+...++.+.||++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999998765 677776665532257789999999985 788775
Q ss_pred e
Q 001291 1079 G 1079 (1106)
Q Consensus 1079 G 1079 (1106)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=322.80 Aligned_cols=202 Identities=25% Similarity=0.316 Sum_probs=168.4
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC--CccceEEEEc-CCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--VPERTAAYIS-QHDNHIG 239 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 239 (1106)
..+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3457999999999999999999999999999999999999998 99999999875332 1245799997 5566778
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.+.....+... ++....++.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChhh-
Confidence 9999999998654332100 00112356788899999988888765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+. ++.+|+.++|+.+++.+++|++++|.
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE-RGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999987653 34556667888889999999999999
Q ss_pred CCeEEEEc
Q 001291 400 DGQIVYQG 407 (1106)
Q Consensus 400 ~G~iv~~G 407 (1106)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=335.55 Aligned_cols=223 Identities=19% Similarity=0.224 Sum_probs=178.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.|+|+++.++. +...+|+||||+|++||++||+|+||||||||+++|+|.... .+..|.|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5889999887742 124699999999999999999999999999999999997531 24579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.++.. ...++.++||+|++.+++ .|++||+.|+.... .....+..++.+.++++.++|.+-.+..++.. +.
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-GN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-cc
Confidence 98742 234567999999988774 79999998864321 11112223344678889888754222223322 34
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||||||||++|||||+.+|+||||||||+|||+.+...+++.|+++++ ++|||++||+++ .+.+.||++++|++ |+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-GW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 6999999999999999999999999999999999999999999999875 799999999997 46778999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
+++.|++.+
T Consensus 302 i~e~g~~~~ 310 (329)
T PRK14257 302 IEEAGETKT 310 (329)
T ss_pred EEEeCCHHH
Confidence 999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.61 Aligned_cols=242 Identities=19% Similarity=0.217 Sum_probs=185.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++.+.. +...+..++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 678899887742110 0000124699999999999999999999999999999999998763 5899999998764
Q ss_pred h---hcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCC
Q 001291 924 Q---ETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS 997 (1106)
. ...++.++|++|++. +.+..|+.+++.++...+. ........+.++++++.+++. ...+.. +.+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 122346999999875 4567899999887644321 122334445688999999994 455544 24699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++...||++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 899999999997 57778999999984 7899
Q ss_pred EEecCCCc-----hhHHHHHHHhCCCCcc
Q 001291 1077 YVGPLGHH-----SCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1077 ~~G~~~~~-----~~~~~~yf~~~~g~~~ 1100 (1106)
+.|+..+. ....-.|+++..|..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (267)
T PRK15112 230 ERGSTADVLASPLHELTKRLIAGHFGEAL 258 (267)
T ss_pred ecCCHHHHhcCCCCHHHHHHHHhccCCcc
Confidence 88875431 1223355666555544
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=339.64 Aligned_cols=229 Identities=24% Similarity=0.348 Sum_probs=183.5
Q ss_pred cCCCCCcceEEEeeeEEEEEEecccccCCChhhHhHHHHHHHhhhhhcCCCccccceeeeceeEEEeCceEEEEEcCCCC
Q 001291 110 VGIVLPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRLTLLLGPPSS 189 (1106)
Q Consensus 110 ~~~~~p~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 189 (1106)
..+..|.=.++|+|++.+-. ++++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 35566666799999887731 234599999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHh
Q 001291 190 GKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266 (1106)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1106)
||||+|++|.++++ . +|+|.+||.++.+... |+.||||||+..+| +-||.+||.++..-. .++.+.++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~sa----s~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPSA----SDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCCc----CHHHHHHH
Confidence 99999999999998 4 8999999999876554 57899999976555 569999999985321 23334444
Q ss_pred hHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccce
Q 001291 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346 (1106)
Q Consensus 267 ~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vll 346 (1106)
|++-. + .|. ...|++..+|.||+.+ +-|||||||||++|||++.+|+|++
T Consensus 461 ~k~a~---~-----------------------hd~---i~~l~~GY~T~VGerG-~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAG---L-----------------------HDV---ISRLPDGYQTLVGERG-LMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcC---c-----------------------HHH---HHhccccchhhHhhcc-cccccchHHHHHHHHHHhcCCCeEE
Confidence 43321 1 111 2357888999999833 3399999999999999999999999
Q ss_pred eecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCHHHHHH
Q 001291 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 347 LDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 414 (1106)
+|||||.||+.|..++++.+.+. ..++|+|++ .|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~--~~~rTvI~I-vH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDV--MSGRTVIMI-VHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHh--cCCCeEEEE-Eecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 99999999999999999999873 345565554 4544 4678899999999999999999999975
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=359.69 Aligned_cols=221 Identities=21% Similarity=0.305 Sum_probs=183.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++ ++.+|+||||+|++||++||+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 6 l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 72 (506)
T PRK13549 6 LEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72 (506)
T ss_pred EEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 77888887763 34699999999999999999999999999999999997664335899999998764
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.. ..++.+||++|++.+++.+||+||+.++...+.......+...+.++++++.+++.+..+..+ .+||||
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 147 (506)
T PRK13549 73 ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLG 147 (506)
T ss_pred CCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHH
Confidence 21 123569999999988888999999988653321111122334456889999999987777664 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++ .+.+.||++++|++ |++++.|
T Consensus 148 qkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~ 225 (506)
T PRK13549 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeec
Confidence 999999999999999999999999999999999999999999878999999999987 47788999999985 7899999
Q ss_pred cCCCc
Q 001291 1080 PLGHH 1084 (1106)
Q Consensus 1080 ~~~~~ 1084 (1106)
+..+.
T Consensus 226 ~~~~~ 230 (506)
T PRK13549 226 PAAGM 230 (506)
T ss_pred ccccC
Confidence 87653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=325.44 Aligned_cols=210 Identities=26% Similarity=0.337 Sum_probs=173.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +..+|+|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP--TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEh
Confidence 367888887663 24699999999999999999999999999999999997653 589999999875
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.++|++|++.+++ .|++||+.+....+ . .....+.++++.+++. +..++. +..||+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 32 234567999999987776 69999987653221 1 1124577889999996 455544 346999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999997 47788999999985 78998
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 213 ~~~~~ 217 (241)
T PRK14250 213 YAKTY 217 (241)
T ss_pred eCCHH
Confidence 88764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=321.31 Aligned_cols=195 Identities=26% Similarity=0.389 Sum_probs=165.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999997 999999998875432 235799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.+.....+.. ..+....++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------------------------------PREIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999999875432210 001122456788999999888877765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . ++++++++|+..++.++||++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-A-GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 456667788888999999999999
Q ss_pred cCCeE
Q 001291 399 SDGQI 403 (1106)
Q Consensus 399 ~~G~i 403 (1106)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=323.73 Aligned_cols=229 Identities=25% Similarity=0.359 Sum_probs=183.7
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++.+|+|+||++.+||+++|+||||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP--DSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 4667766653 24699999999999999999999999999999999998653 58999999987643
Q ss_pred h-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 925 E-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 925 ~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
. ..++.++|++|++..++..|+.||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 224579999999988888999999987654321 222333456789999999987777653 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
++|||||+.+|++++|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|+ .|++++.|+..
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~~ 216 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSPD 216 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCHH
Confidence 99999999999999999999999999999999999998765 899999999987 4778899999998 47899988865
Q ss_pred Cc-hhHHHHHHHhCCCC
Q 001291 1083 HH-SCHLISYFEVCPDA 1098 (1106)
Q Consensus 1083 ~~-~~~~~~yf~~~~g~ 1098 (1106)
.. .....+|.....|+
T Consensus 217 ~~~~~~~~~~~~~~~~~ 233 (237)
T TIGR00968 217 EVYDHPANPFVMSFLGE 233 (237)
T ss_pred HHHcCCCcHHHHHhccc
Confidence 32 12233444444443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=332.31 Aligned_cols=218 Identities=23% Similarity=0.269 Sum_probs=179.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCce-eEEEEEEcCcc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYP 921 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~-~~G~i~i~g~~ 921 (1106)
.++++|+++.++. ..+++|+||||+|++||++||+||||||||||+++|+|..++.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4778888877631 12359999999999999999999999999999999999765321 13899999987
Q ss_pred CCh---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 922 KKQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
... ...++.+||++|++. .++..||+||+.|....+ ....++.++.+.++++.++|.+..+..+ ..||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 643 234567999999974 556789999998764322 2234445567889999999988777663 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++. + +.||++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999998764 8999999999873 5 67999999985 7999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 223 ~~g~~~ 228 (282)
T PRK13640 223 AQGSPV 228 (282)
T ss_pred EeCCHH
Confidence 998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=324.03 Aligned_cols=206 Identities=23% Similarity=0.359 Sum_probs=171.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5999999999999999999999999999999999999863 22389999999987532 1245799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----ccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1106)
+ +||+||+.+.....+... ..+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------------------------------KKELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999998754322100 001123456788999997 66666
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 6654 999999999999999999999999999999999999999999998754 3 5667788888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|+++++|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=319.62 Aligned_cols=198 Identities=28% Similarity=0.350 Sum_probs=164.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999998 9999999998765322 2469999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||.||+.+.....+.. ..+....++.+++.+||.+..++.++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES----------------------------------SRQSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhCChh
Confidence 89999999999865332110 00112346778999999988887776
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++... +++|+.++|+..++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEE
Confidence 5 99999999999999999999999999999999999999999999875433 44555567777776 55999999
Q ss_pred ecCCeEEEE
Q 001291 398 LSDGQIVYQ 406 (1106)
Q Consensus 398 L~~G~iv~~ 406 (1106)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=289.59 Aligned_cols=198 Identities=28% Similarity=0.401 Sum_probs=169.1
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh------cc-cceEEEEccCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE------TF-ARISGYCEQNDI 939 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~g~v~q~~~ 939 (1106)
+...+|++|++.|++||.+|||||||||||||+-+++|...+ .+|+|.+.|+++.+. .+ .+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 456799999999999999999999999999999999998764 489999999986431 22 357999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 940 HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 940 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
+.|++|..||+.....++... .........+.|+.+||.+-.+... .+|||||+|||+||||++..|+|||.
T Consensus 99 Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 999999999999888776532 2223345678899999987655543 46999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
||||-+||.++...|.+++-.+. +.|.|.|++||||. +...|||.+-|.. |+++.
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999998885 45999999999986 5788999999985 67764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=367.46 Aligned_cols=211 Identities=27% Similarity=0.395 Sum_probs=175.6
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|+|+. .++++|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 36899999999863 124699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~ 991 (1106)
.++ ..+++.+|||+|++.++. .|++||+.++. .+.+ ++.++++++..++.+..+ ..++..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 754 456788999999998875 69999997642 1122 334677888888766443 334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.+++.|++ .++|+|++||+++ ....||++++|++
T Consensus 613 G-~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 G-ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred C-CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 3 56999999999999999999999999999999999999999999976 4899999999986 4577999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 687 -G~i~~~G~~~ 696 (710)
T TIGR03796 687 -GKVVQRGTHE 696 (710)
T ss_pred -CEEEEecCHH
Confidence 7999998753
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=294.93 Aligned_cols=205 Identities=25% Similarity=0.374 Sum_probs=179.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+|+|||+.|.+|+.++++||||||||||||+++|+.+|+ .|+|.+||.+++.- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999998 99999999987643 34568999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
+|++|+.++.|+++. ++..++.+.+...||+...+.+|-. |
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccccceEe-----e
Confidence 999999999886421 2234567789999999988888765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec--CCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS--DGQ 402 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 402 (1106)
||||||||.|||||..+|+.|+||||+++||.-++.++..+|-++.+..+ .-++.++|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999988877554 556668999999999999999998 589
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
|+..=+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998766654333
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=329.77 Aligned_cols=204 Identities=26% Similarity=0.380 Sum_probs=171.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCC-CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDN-HIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 239 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999997 9999999998754321 357999999864 467
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||.||+.|+....+.. ..+....++.+++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------------------------------PIEIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999999875432210 001123466789999999888887765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998753 3 45566678888887 5799999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998864
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-36 Score=323.61 Aligned_cols=198 Identities=24% Similarity=0.377 Sum_probs=165.7
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..... ...+|++|++.+++.+|+.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP--TSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 5789999999999999999999999999999998653 5899999998764321 12489999998888899999998
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1031 (1106)
+...... .....+..++.+.++++.+++.+..+..+ .+||||||||++|||||+.+|++|||||||+|||+.++
T Consensus 77 ~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVL-PDLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhcc-cCCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 7532111 12223344556789999999987666653 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1032 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1032 ~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
..+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999997 57788999999985 788888864
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.16 Aligned_cols=217 Identities=24% Similarity=0.263 Sum_probs=176.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~----~~~~~~~ 990 (1106)
.+... ..+++.+||++|++..++ .|+.||+.++...+.. ........+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFP-KSIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCC-CcHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87632 234567999999988776 4999999886543311 11223334567889999999642 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|+
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 789999999987 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 237 ~-G~i~~~g~~~ 247 (267)
T PRK14235 237 L-GNLVEVGDTE 247 (267)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988753
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.24 Aligned_cols=205 Identities=25% Similarity=0.360 Sum_probs=172.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDN- 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 46999999999999999999999999999999999999998 99999999887432 11357999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
.+..+||+||+.|+....+.. ..+....++.+++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------------------------------EDEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999999875432110 001123467789999997 577777
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. .+++|+.++|+.+++.++||+|
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 765 999999999999999999999999999999999999999999998743 3566777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988775
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-36 Score=342.52 Aligned_cols=195 Identities=24% Similarity=0.378 Sum_probs=171.2
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCCCCCCCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1106)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999998 99999999886431 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+.+.. ....++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 999999863200 012356789999999888887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++..++|+|++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~-~g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLARE-INIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999987653 34566778899999999999999999999
Q ss_pred EEEEcCHHHHH
Q 001291 403 IVYQGPRELVL 413 (1106)
Q Consensus 403 iv~~G~~~~~~ 413 (1106)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999885
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=328.50 Aligned_cols=217 Identities=24% Similarity=0.291 Sum_probs=179.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. ..+.+|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~--~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV--KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 4788999877641 113589999999999999999999999999999999998663 589999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.++|++|++. .++..|+.+|+.|..... ....+...+.++++++.+++.+..+..+ .+||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 42 234567999999975 566789999998764322 1223344556789999999987766653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++. .||++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999997 455 4999999985 79999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.|+..+
T Consensus 223 ~g~~~~ 228 (269)
T PRK13648 223 EGTPTE 228 (269)
T ss_pred ecCHHH
Confidence 988654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=329.35 Aligned_cols=216 Identities=22% Similarity=0.253 Sum_probs=175.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||+|++||+++|+||||||||||+++|+|..++ .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999987763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~-----~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+.. ....++.++|++|++.+++ .|++||+.+....+. .. ...++.+.++++.+++.. ..+..
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 151 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES--- 151 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC---
Confidence 8653 1234557999999988777 599999988654321 11 223445677888888742 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 152 --~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 152 --GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 346999999999999999999999999999999999999999999999854 799999999997 5788999999998
Q ss_pred c----------CCEEEEEecCCC
Q 001291 1071 R----------GGREVYVGPLGH 1083 (1106)
Q Consensus 1071 ~----------gG~~~~~G~~~~ 1083 (1106)
+ +|++++.|+.++
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~~~ 250 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNETKK 250 (269)
T ss_pred ccccccccccccceEEEeCCHHH
Confidence 5 367999988653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=331.32 Aligned_cols=220 Identities=21% Similarity=0.286 Sum_probs=179.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+.++|+++.++... ....+.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~--~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP--SEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEec
Confidence 367888888774210 00124699999999999999999999999999999999998663 589999999876
Q ss_pred Ch----hcccceEEEEccCCCC-CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 923 KQ----ETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ~~----~~~~~~~g~v~q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ...++.+||++|++.. ....|+.|++.|+.... .......++.++++++.++|.+..+..+ .+||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2345679999999742 33468999998875322 2233444567899999999988777664 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++. .||++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999975 4999999999997 354 4999999985 7899
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 224 ~~g~~~ 229 (280)
T PRK13633 224 MEGTPK 229 (280)
T ss_pred EecCHH
Confidence 988754
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-35 Score=327.79 Aligned_cols=205 Identities=24% Similarity=0.353 Sum_probs=169.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-------ccceEEEEcCCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDN- 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1106)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999998 999999998875421 1356999999862
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1106)
.+...||+||+.|.....+.. . .+....++.+++.+||. ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVS----------Q------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 333479999999865432110 0 01122356778899997 456666
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.. . +++|++++|+..++.+++|++
T Consensus 143 ~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 PFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 654 999999999999999999999999999999999999999999998754 3 456666788888999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999998774
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=328.10 Aligned_cols=220 Identities=26% Similarity=0.349 Sum_probs=177.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc------eeEEEEEE
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YITGDIRI 917 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~------~~~G~i~i 917 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 45677776553 346999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001291 918 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1106)
Q Consensus 918 ~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~ 993 (1106)
+|.+... ..+++.++|++|++...+.+|+.||+.+....+.. .....+..++.++++++.+++.+..+..+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9987532 23445689999998766668999999875321110 11111234456789999999987766553
Q ss_pred CCCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhc
Q 001291 994 NGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAF 1063 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~ 1063 (1106)
..||+|||||++|||||+ .+|++|+|||||+|||+.++..+++.|+++.++ |.|||++||+++ ++.+.|
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 469999999999999999 599999999999999999999999999998765 899999999987 477789
Q ss_pred CeEEEEecCCEEEEEecCCC
Q 001291 1064 DELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1064 D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|++++|++ |++++.|+..+
T Consensus 223 d~i~~l~~-G~i~~~g~~~~ 241 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPAD 241 (272)
T ss_pred CEEEEEEC-CeEEEecCHHH
Confidence 99999985 78999987653
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=325.52 Aligned_cols=206 Identities=33% Similarity=0.510 Sum_probs=173.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999987654322 35699999998887889
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++....+. . . .+....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~-~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGL-S---------R------------------------AEDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCC-C---------c------------------------HHHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 999999986432110 0 0 00112356789999999888887765
Q ss_pred CCCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++.+.. +.+|++++|+..++.++||+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 9999999999999999 5999999999999999999999999999876333 456666788889999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=324.80 Aligned_cols=206 Identities=23% Similarity=0.314 Sum_probs=173.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC----------------ccceE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV----------------PERTA 228 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 228 (1106)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 36999999999999999999999999999999999999997 999999998774321 14579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHHh-cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1106)
+|++|++.+++.+||.||+.++... .+.. ..+....++.+++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------------------------------RAEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 9999999889999999999886421 1100 0011123567889999
Q ss_pred CcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 308 LDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 308 L~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
|++..+..+.+ ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++... .+++++.++|+..+
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 98887776654 9999999999999999999999999999999999999999999987653 35667778888899
Q ss_pred HHhhcCeEEEecCCeEEEEcCHHHHH
Q 001291 388 TYNLFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 388 ~~~~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.44 Aligned_cols=216 Identities=23% Similarity=0.309 Sum_probs=178.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. +++++|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4788888877631 134699999999999999999999999999999999998653 489999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ..+++.+||++|++. .++..|++||+.+..... ....+..+..+.++++.+++.+..+..+ ..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 556789999998764321 1223344556889999999987777654 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ ++|||++||+++. + ..||++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 5999999999973 5 57999999985 78988
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 223 ~g~~~ 227 (271)
T PRK13632 223 QGKPK 227 (271)
T ss_pred ecCHH
Confidence 88754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=332.50 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=176.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++... .....+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 478899988774210 0013599999999999999999999999999999999998653 579999999765
Q ss_pred C--------hhcccceEEEEccCCCC-CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 001291 923 K--------QETFARISGYCEQNDIH-SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPG 992 (1106)
Q Consensus 923 ~--------~~~~~~~~g~v~q~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g 992 (1106)
. ....++.++|++|++.. ....|++||+.|..... ....+.....+.++++.++|. +..+..+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~---- 148 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP---- 148 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh----
Confidence 2 12345679999999742 22369999998764321 122334445678899999994 5555543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.||++++|++
T Consensus 149 -~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 149 -FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999875 4899999999997 57789999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 227 -G~i~~~g~~~ 236 (289)
T PRK13645 227 -GKVISIGSPF 236 (289)
T ss_pred -CEEEEeCCHH
Confidence 7899888754
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=325.62 Aligned_cols=216 Identities=21% Similarity=0.263 Sum_probs=174.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 378889887663 2469999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~----~~~~~~~ 990 (1106)
.+... ...++.+||++|++.+++. |++||+.|...... ....++..+.++++++.+++.+. .+..
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~--- 152 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ--- 152 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhhCC---
Confidence 87531 2335679999999887774 99999987643321 11223344567788999988542 2222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
..+||+|||||++|||+|+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 153 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 228 (259)
T PRK14274 153 --ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY 228 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 799999999997 5778899999997
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |+++..|+..
T Consensus 229 ~-G~i~~~g~~~ 239 (259)
T PRK14274 229 M-GELVECNDTN 239 (259)
T ss_pred C-CEEEEECCHH
Confidence 5 7999998754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=324.24 Aligned_cols=206 Identities=19% Similarity=0.296 Sum_probs=167.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 35999999999999999999999999999999999998751 01289999999886432 123579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
++ +||+||+.|+.+..+.. . .+....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------K------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 89999999875432210 0 00112356678888884 3455
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
+.+++ |||||||||+||+||+.+|+++||||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.++||
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK--KD-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--hC-CEEEEEECCHHHHHHhCC
Confidence 55544 99999999999999999999999999999999999999999999874 23 566778888999999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=369.03 Aligned_cols=134 Identities=20% Similarity=0.236 Sum_probs=107.5
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHh---cCCCe
Q 001291 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELV---ANPSI 1016 (1106)
Q Consensus 941 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~---~~p~i 1016 (1106)
+...||.|+|.++..-........++..+.+ ++++.++|..+ .+... .+||||||||++||++|+ .+|++
T Consensus 760 ~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~L 833 (1809)
T PRK00635 760 YKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPTL 833 (1809)
T ss_pred cCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCE
Confidence 4457899999877542211112233344455 58889999875 45553 469999999999999998 69999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
|||||||+|||+.+...++++|++++++|.|||+++|+++. + +.+|++++|. .||+++..|++.
T Consensus 834 LILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~-i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 834 YVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHV-V-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999998889999999999873 5 8999999995 368999999764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=324.24 Aligned_cols=228 Identities=20% Similarity=0.215 Sum_probs=180.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
-+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367788877653 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.+||++|++.+++ .|++||+.|...... ..........++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 123567999999988776 899999987653321 1122334456788999998753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 346999999999999999999999999999999999999999999999876 699999999997 5778899999997
Q ss_pred cCCEEEEEecCCCc-----hhHHHHHHHh
Q 001291 1071 RGGREVYVGPLGHH-----SCHLISYFEV 1094 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~~-----~~~~~~yf~~ 1094 (1106)
+ |++++.|+..+. ...+.+||+.
T Consensus 221 ~-G~i~~~~~~~~~~~~~~~~~~~~~~~~ 248 (251)
T PRK14270 221 M-GDLIEFNKTEKIFLEPQKKETEDYISG 248 (251)
T ss_pred C-CeEEEeCCHHHHhcCCCChHHHHhhcc
Confidence 5 789999876532 1234556644
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=321.63 Aligned_cols=202 Identities=30% Similarity=0.426 Sum_probs=167.5
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEc-cCCCCCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCE-QNDIHSP 942 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~-q~~~~~~ 942 (1106)
++.+++|+|+||+|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |.+.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3456799999999999999999999999999999999997653 58999999976432 23455789997 5556677
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
.+|++|++.+....+ ....+.....+.++++.+++.+..+..+ .+||+|||||++||+||+.+|++|+||||
T Consensus 109 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999998765432 1223334456788999999987777654 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999998764 899999999987 47788999999985 6887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=323.96 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=175.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 36999999999999999999999999999999999999998 9999999998754322 2358999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++....... +...... + .+. . .....+....++.+++.+||+...++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~-~~~--~-------~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------K-TPA--F-------RRAESEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------c-ccc--c-------ccchhHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999999864321000 0000000 0 000 0 000011223466788999998888877765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+ ..+++|+.++|+..++.++||++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998754 3345666778889999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+++++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=325.27 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=176.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc-e--eEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--ITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~-~--~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478889887763 246999999999999999999999999999999999975532 2 479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .|++||+.++...+. .......++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 223457999999988877 899999987654331 1122333456778899988843 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 357999999999999999999999999999999999999999999999865 699999999998 5788999999997
Q ss_pred c----CCEEEEEecCC
Q 001291 1071 R----GGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~----gG~~~~~G~~~ 1082 (1106)
. .|++++.|+..
T Consensus 224 ~~~~~~G~i~~~~~~~ 239 (259)
T PRK14260 224 TDESRIGQMVEFGVTT 239 (259)
T ss_pred ccCCCCceEEEeCCHH
Confidence 3 48999998865
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=323.90 Aligned_cols=206 Identities=21% Similarity=0.355 Sum_probs=173.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 36999999999999999999999999999999999999998 9999999988754332 3569999999988899
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.+..+..+. .. ..+....++.+++.+||++..+..++.
T Consensus 93 ~tv~enl~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LS------------------------AEQREDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccc---------cC------------------------HHHHHHHHHHHHHHcCCHHHhhcchhh--
Confidence 9999999876432110 00 001123456788999998877776654
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||++++.+|++|+|||||+|||+.++..+.+.++.+.. . +.+++.++|+..++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999988753 3 45566677888899999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=315.99 Aligned_cols=189 Identities=23% Similarity=0.346 Sum_probs=160.5
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC---h----hcccceEEEEccCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK---Q----ETFARISGYCEQNDIHS 941 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~g~v~q~~~~~ 941 (1106)
+++|+|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF--DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 4699999999999999999999999999999999998663 5899999998742 1 12346799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
+..|++||+.+....+ ........+.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8899999998865332 1223344556889999999987766653 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
||+|||+.++..+.+.|+++.++|.|||++||+++ ..+.||++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998777999999999986 34689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=339.96 Aligned_cols=199 Identities=25% Similarity=0.419 Sum_probs=171.9
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCCCCCCCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1106)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999998 99999999887432 12467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+.+... . .+....++++++.+||++..|+.+++
T Consensus 92 v~enl~~~~~~~~------------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------P------------------------SERRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC------------h------------------------hHHHHHHHHHHHHcCChhHhcCChhh----
Confidence 9999998753210 0 00122457789999999888888765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 99999999999999999999999999999999999999999999876533 4566678889999999999999999999
Q ss_pred EEEEcCHHHHH
Q 001291 403 IVYQGPRELVL 413 (1106)
Q Consensus 403 iv~~G~~~~~~ 413 (1106)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=325.83 Aligned_cols=205 Identities=27% Similarity=0.353 Sum_probs=171.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC--C---CccceEEEEcCCCC-CC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE--F---VPERTAAYISQHDN-HI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 238 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35999999999999999999999999999999999999998 9999999998742 1 11357999999864 34
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
...|+.||+.+.....+.. . .+....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------E------------------------AEITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhcCCchh
Confidence 5678999998865432110 0 01112356788999998888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-Q-GNHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 455667889999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+++++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=322.08 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=170.3
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC------C---CccceEEEEcCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE------F---VPERTAAYISQHDN 236 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d~ 236 (1106)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999999987 9999999987631 0 11357999999998
Q ss_pred CCCCCCHHHHHHHHH-HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccc
Q 001291 237 HIGEMTVRETLAFAA-RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM 315 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1106)
+++.+||+||+.+.. ...+.. . .+....++.+++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 999999999997532 221110 0 00122456788999998888877
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ ||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. . +++++.++|+..++.+++|++
T Consensus 139 ~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 PLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred hhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEE
Confidence 765 999999999999999999999999999999999999999999998743 3 456667788888999999999
Q ss_pred EEecCCeEEEEcCHHHH
Q 001291 396 ILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~ 412 (1106)
++|.+|+++++|+++++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999998764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=329.14 Aligned_cols=217 Identities=23% Similarity=0.297 Sum_probs=179.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++.. ....+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEC
Confidence 47788988876420 123599999999999999999999999999999999998763 589999999876
Q ss_pred Ch---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.+||++|++. .++..|+.||+.++.... ....+...+.++++++.+++.+..+..+ ..||+
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764322 1223344456789999999987766653 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|+||||||||+|||+.++..+++.|++++++ |+|||++||+++. + ..||++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999865 9999999999874 5 46999999985 68999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 221 ~g~~~ 225 (277)
T PRK13642 221 EAAPS 225 (277)
T ss_pred eCCHH
Confidence 88754
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=320.71 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=169.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC----CCCceeEEEECCccCCCCCc-cceEEEEcCCCC--CCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP----SLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HIG 239 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1106)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999988 6 9999999988754322 257999999974 556
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc---ccccccc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD---ICADTMV 316 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~---~~~dt~v 316 (1106)
.+|+.|++.+.....+.. . .+....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999998764322110 0 01123467789999998 3456655
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+||++++.+|++|+|||||+|||..+...+.+.|+++.+ ..+++|++++|+.+++..++|+|+
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ-LFGTGILLITHDLGVVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhCCEEE
Confidence 54 999999999999999999999999999999999999999999998754 234566677888899999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 001291 397 LLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1106)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=318.19 Aligned_cols=173 Identities=24% Similarity=0.297 Sum_probs=135.3
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
|+==.++|..||+++++||||-||||+.++|+|..++ .+|. .. .-.++|=||...-....||++.+.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 3334577888999999999999999999999997664 3454 11 123678888655556789998764
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~ 1031 (1106)
-...-+.. ..-+..|+++-++|.++.++.+ .+|||||.|||+||.+|.++.++.+||||++.||.+.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 32211111 1123467888899999888875 46999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1032 AIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1032 ~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
..+-++||+... .++|.+++-||+.+ +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 999999999874 47899999999864 445689988875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=323.75 Aligned_cols=217 Identities=25% Similarity=0.291 Sum_probs=174.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 367888887763 2469999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ..+++.++|++|++.+++ .|++||+.+....+. ....+..+..+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87532 223567999999988776 899999987643321 1112233456788899988753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..++++|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999987 5778899999998
Q ss_pred cCCEEEEEecCCC
Q 001291 1071 RGGREVYVGPLGH 1083 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~ 1083 (1106)
+ |++++.|+..+
T Consensus 222 ~-G~i~~~g~~~~ 233 (252)
T PRK14239 222 D-GDLIEYNDTKQ 233 (252)
T ss_pred C-CEEEEeCCHHH
Confidence 5 78999987653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=329.27 Aligned_cols=205 Identities=25% Similarity=0.351 Sum_probs=173.4
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCC-CCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN-HIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1106)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999999998 9999999988754221 356999999863 34568
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||.||+.++....+.. .++....++.+++.+||.+..++.++.
T Consensus 95 tv~~~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------------------------------EETVAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998865432210 001123467789999999888888765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.++||+|++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999987653 3456677888889999999999999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=365.52 Aligned_cols=207 Identities=25% Similarity=0.377 Sum_probs=165.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|++++||+.++|+||||||||||+++|+|++ |. +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 36999999999999999999999999999999999999 86 9999999999877654 578999999886664 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|++|||.++... .+.+...++....+ .+..+ -.|++..||.||+. +
T Consensus 438 TI~eNI~~g~~~-------------------------~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNPD-------------------------ASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCCC-------------------------CCHHHHHHHHHHhC------HHHHH--HhcccccccccccC-C
Confidence 999999986310 11111111111000 11112 24666789999974 5
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++||||++++|+||+||||||+||+.++..|.+.|+++. .++|+|++ +|.. +....||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiI-tHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMV-THQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEE-ecCh-HHHHhCCEEEEEeCC
Confidence 5699999999999999999999999999999999999999999998763 35566554 4444 456789999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++..|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=327.70 Aligned_cols=209 Identities=25% Similarity=0.337 Sum_probs=171.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++||+|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999887112399999999876432 2357999999864 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|..+..+.. .++....++.+++.+||+...++.+..
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCccc--
Confidence 99999999865432210 011123467789999999888877754
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.... +++|+.++|+..++ ..||++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999876533 45556667777777 57999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|++++.|+++++..
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=321.47 Aligned_cols=202 Identities=26% Similarity=0.349 Sum_probs=169.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999997 9999999988754322 3569999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-CcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-LDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1106)
+||+||+.++....+.. .....+.+++.++ ++...++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~~~- 131 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRRGGD- 131 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCChhh-
Confidence 99999999875432100 0012344566665 56656666654
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.+. .+++++.++|+..++.+++|+|++|+
T Consensus 132 ----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999987542 34566667888899999999999999
Q ss_pred CCeEEEEcCHHHH
Q 001291 400 DGQIVYQGPRELV 412 (1106)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1106)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=323.59 Aligned_cols=205 Identities=25% Similarity=0.338 Sum_probs=171.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC----------------CccceE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----------------VPERTA 228 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 228 (1106)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 35999999999999999999999999999999999999987 99999999876421 113579
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1106)
+||+|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999988999999999987542 11100 0011234567899999
Q ss_pred Ccccc-cccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 308 LDICA-DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 308 L~~~~-dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
|.+.. +..++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +.+|++++|+..
T Consensus 141 l~~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGKYPV-----HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 98753 55554 4999999999999999999999999999999999999999999998754 3 556667888889
Q ss_pred HHHhhcCeEEEecCCeEEEEcCHHHHH
Q 001291 387 ETYNLFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
++..+||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=322.94 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=166.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 59999999999999999999999999999999999998621 1289999999876421 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC----cccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL----DICADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL----~~~~dt 314 (1106)
+ +||+||+.|+....+... ..+....++.+++.+|+ .+..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKD---------------------------------KKKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCC---------------------------------HHHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 899999998754321100 00011235566777777 344566
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++. .+ ++++.++|+..++.+++|+
T Consensus 147 ~~~-----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 NAL-----SLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 554 499999999999999999999999999999999999999999999874 23 5666788888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|+++.+|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=321.01 Aligned_cols=200 Identities=24% Similarity=0.374 Sum_probs=168.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 242 (1106)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5999999999999999999999999999999999999998 999999998875432 2457999999987776 69
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMR 321 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 321 (1106)
|+||+.++....+. ....++.+++.+||+ +..++.+.+
T Consensus 93 v~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~--- 131 (241)
T PRK14250 93 VKDNIEYGPMLKGE--------------------------------------KNVDVEYYLSIVGLNKEYATRDVKN--- 131 (241)
T ss_pred HHHHHhcchhhcCc--------------------------------------HHHHHHHHHHHcCCCHHHhhCCccc---
Confidence 99999875322100 011345678889996 456666554
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+.+++.+++|+|++|++|
T Consensus 132 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 132 --LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM-NLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999875433 455666888889999999999999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=319.45 Aligned_cols=200 Identities=27% Similarity=0.388 Sum_probs=170.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+|+|+||+|++||+++|+|+||||||||+++|+|..++ ..|+|.++|.+.... ..++.++|++|++.+++..|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p--~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP--DSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 79999999999999999999999999999999997653 589999999876431 124579999999988888999999
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+.+..... ........+.+.++++.+++.+..+..+ ..||+|||||++|||||+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999987777664 469999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
+++.+.+.|+++..+ |+|||++||++. ++.+.||++++|++ |++++.|+..
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 215 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKPE 215 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999998764 999999999997 47788999999985 7899888754
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=316.92 Aligned_cols=215 Identities=25% Similarity=0.333 Sum_probs=178.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-C-CCCceeEEEECCccCCCCCc-------cceEEEEcCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-P-SLKVSGRVTYNGHNMDEFVP-------ERTAAYISQH 234 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1106)
..++++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++..... .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 33467999999998755432 2579999999
Q ss_pred C--CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc
Q 001291 235 D--NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312 (1106)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
+ .+.|.+||.+.+.-..+...... ..++....+.++|+.+||++..
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 5 67899999999887665431100 0112334567789999998642
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001291 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1106)
Q Consensus 313 dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1106)
.. -+.+...|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.+ ..++.++.|+|+..-+.++|
T Consensus 145 ~~--~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 RR--LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred HH--HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 11 1233445999999999999999999999999999999999999999999999876 56788888999999999999
Q ss_pred CeEEEecCCeEEEEcCHHHHH
Q 001291 393 DDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1106)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999884
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=321.89 Aligned_cols=212 Identities=24% Similarity=0.347 Sum_probs=174.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999999998 9999999988754322 2469999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++..... ..+...... ...+....++.+++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 999999998643210 000000000 0001223467789999999888877765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.++||+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998753 3 4666678888999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=318.71 Aligned_cols=196 Identities=24% Similarity=0.338 Sum_probs=166.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 36999999999999999999999999999999999999987 999999998875432 135799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCchh
Confidence 99999999998754322100 01112356678999998877777665
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||+|++.+|++|+|||||+|||+.++..+.+.|+++.. . ++++++++|+..++..++|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 456777889999999999999999
Q ss_pred cCCeEE
Q 001291 399 SDGQIV 404 (1106)
Q Consensus 399 ~~G~iv 404 (1106)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=320.71 Aligned_cols=202 Identities=28% Similarity=0.347 Sum_probs=168.0
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765322 358999999889999999999
Q ss_pred HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChh
Q 001291 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGG 327 (1106)
.++......+ .. ..+....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LS------------------------KSERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CC------------------------HHHHHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8863210000 00 001123456789999999888887765 9999
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEc
Q 001291 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407 (1106)
Q Consensus 328 qkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 407 (1106)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++.+++|+|++|++|++++.|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999876533 456666788889999999999999999999988
Q ss_pred CHHHH
Q 001291 408 PRELV 412 (1106)
Q Consensus 408 ~~~~~ 412 (1106)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=337.69 Aligned_cols=192 Identities=23% Similarity=0.376 Sum_probs=166.8
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998663 58999999976532 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
+||+.|+.. ...++.++++++.+++.+..+..+ .+||||||||++|||||+.+|++|||||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987631 112345789999999988777664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|+.++..+++.|+++.++ |+|||++|||++ ++...||++++|++ |+++..|+..+
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 215 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLEE 215 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHHH
Confidence 999999999999998765 899999999997 57889999999985 78999987653
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=366.89 Aligned_cols=210 Identities=24% Similarity=0.390 Sum_probs=174.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|+|+. ++++|+|+|++|++|+.+||+|+||||||||+++|+|...+ .+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEEH
Confidence 6899999999851 23599999999999999999999999999999999998764 589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g 992 (1106)
++ ..+++.+|||+|++.+++ .|++||+.++.. .+.+ ++.+.++++..++.+.. |..++..|
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 456778999999998875 599999987521 1122 23467777777776543 33344433
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+++|+||+||||||+||+++++.+++.|+++ +|+|+|++||+++ ..+.||++++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 569999999999999999999999999999999999999999999875 4899999999986 4578999999985
Q ss_pred CEEEEEecC
Q 001291 1073 GREVYVGPL 1081 (1106)
Q Consensus 1073 G~~~~~G~~ 1081 (1106)
|++++.|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=321.93 Aligned_cols=216 Identities=21% Similarity=0.280 Sum_probs=174.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++++|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367888887763 236999999999999999999999999999999999964321 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .|+.||+.++...+. ....+..++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 224567999999988777 899999988653321 1122334556788888888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.||++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 34699999999999999999999999999999999999999999999985 4899999999987 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 220 ~-G~i~~~~~~~ 230 (250)
T PRK14240 220 N-GEIVEFGDTV 230 (250)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899888643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=326.35 Aligned_cols=204 Identities=28% Similarity=0.396 Sum_probs=171.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC--C---ccceEEEEcCCCC-CCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF--V---PERTAAYISQHDN-HIG 239 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1106)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5999999999999999999999999999999999999998 99999999887421 1 1357999999863 344
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||.||+.|+....+. .. .+....+..+++.+||++..++.+++
T Consensus 93 ~~tv~e~i~~~~~~~~~----------~~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~- 137 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL----------SK------------------------EEVEKRVKEALKAVGMEGFENKPPHH- 137 (275)
T ss_pred cccHHHHHHHHHHHcCC----------CH------------------------HHHHHHHHHHHHHCCCchhhcCChhh-
Confidence 67999999886432111 00 01122456789999999888888765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.++||++++|+
T Consensus 138 ----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 138 ----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 3 5667778889999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=321.02 Aligned_cols=209 Identities=24% Similarity=0.317 Sum_probs=170.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCCC---ccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1106)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35999999999999999999999999999999999998741 013899999998875432 2357999999988889
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----ccccc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADTM 315 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~ 315 (1106)
.+||+||+.++.+..+.... ..+....++.+++.+||.+ ..|+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhhhcCC
Confidence 99999999987543211000 0011234567888999854 34555
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+. .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. .+ ++++.++|+..++.+++|+|
T Consensus 144 ~~-----~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 144 AG-----KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 499999999999999999999999999999999999999999999874 23 56677888888999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999998774
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=321.39 Aligned_cols=203 Identities=23% Similarity=0.307 Sum_probs=165.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEECCccCCCC-----CccceEEEEcCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHD 235 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1106)
.+|+|+|+++++|++++|+|||||||||||++|+|.+. |+ +|+|.++|+++... ..++.++|++|++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 96 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV---EGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCC---ceEEEECCEEccccccCHHHHhhcEEEEecCC
Confidence 59999999999999999999999999999999999864 34 89999999887531 1145799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----c
Q 001291 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----C 311 (1106)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~ 311 (1106)
.+++ .||+||+.|+....+.... .+....++.+++.+||.. .
T Consensus 97 ~~~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 142 (253)
T PRK14242 97 NPFP-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDR 142 (253)
T ss_pred CCCc-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHH
Confidence 7777 5999999987543221000 001123556788888854 2
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1106)
.+..+ +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.++
T Consensus 143 ~~~~~-----~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~ 214 (253)
T PRK14242 143 LHESA-----LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARV 214 (253)
T ss_pred hhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHh
Confidence 34444 4499999999999999999999999999999999999999999999873 23 5666688888999999
Q ss_pred cCeEEEecCCeEEEEcCHHHHH
Q 001291 392 FDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 392 ~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|+|++|++|++++.|+++++.
T Consensus 215 ~d~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 215 SDVTAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred CCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999988763
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=322.23 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=172.2
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcCcc
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISGYP 921 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g~~ 921 (1106)
.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 4667776553 2469999999999999999999999999999999999754 11 358999999987
Q ss_pred CCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 922 KKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 922 ~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
... ...++.++|++|++.+++. |+.||+.+....+. ........+..++++++.+++.+........ .+.+|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 532 1245679999999887775 99999987643321 1112233445678899999986521111111 13469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|+|||||++|||||+.+|+||||||||+|||+.++..+.+.|+++. +|+|||++||+++ ++.+.||++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999997 57788999999985 7899
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 228 ~~~~~~ 233 (251)
T PRK14244 228 EYNTTQ 233 (251)
T ss_pred EeCCHH
Confidence 888753
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=325.44 Aligned_cols=208 Identities=24% Similarity=0.310 Sum_probs=172.6
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCC--
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHD-- 235 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d-- 235 (1106)
.+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999998 999999998875432 135699999986
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccc
Q 001291 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADT 314 (1106)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1106)
.+++.+||+||+.+....... .. ..+....++.+++.+||+ ...+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTS---------LD------------------------ESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CC------------------------HHHHHHHHHHHHHHcCCChhhhhC
Confidence 466789999999876432100 00 001123456789999996 56777
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+...+.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQA-FGTAYLFITHDLRLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHHHhcE
Confidence 6654 9999999999999999999999999999999999999999999987653 345677788999999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
+++|++|++++.|+++++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=316.82 Aligned_cols=206 Identities=26% Similarity=0.348 Sum_probs=174.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999997 999999999876432 24679999999988889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+.....+... ......++.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 999998754322100 00112456789999999888877754
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.... +.+|++++|...++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876432 45555677888889999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887664
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=333.05 Aligned_cols=214 Identities=17% Similarity=0.187 Sum_probs=171.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCccCCCCCc-------cceEEEEcCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEFVP-------ERTAAYISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1106)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|.++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986411 128999999998765432 246999999874
Q ss_pred --CCCCCCHHHHHHHHHHhcCC-CcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc---
Q 001291 237 --HIGEMTVRETLAFAARCQGV-GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI--- 310 (1106)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--- 310 (1106)
+.+.+||.+++.+....... +..+ + ...+....+..+++.+||.+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------Q-------------RFGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------c-------------cHHHHHHHHHHHHHHCCCCChHH
Confidence 57889999999864321100 0000 0 00011234677899999975
Q ss_pred cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 311 ~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
..++.+. .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++.+ ..+.++++++|+...+.+
T Consensus 151 ~~~~~p~-----~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~ 224 (330)
T PRK15093 151 AMRSFPY-----ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQ 224 (330)
T ss_pred HHhCCch-----hCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHH
Confidence 3455554 4999999999999999999999999999999999999999999999764 335677778999999999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 001291 391 LFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 391 ~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
++|+|++|++|+|++.|+.+++.
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999998874
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=321.54 Aligned_cols=217 Identities=24% Similarity=0.266 Sum_probs=173.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCce---eEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---ITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~---~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467788887653 3469999999999999999999999999999999999765322 379999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 2345579999999988888999999987643221 1112233445667777776642 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+..||+|||||++|||||+.+|+||+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999864 799999999997 4777899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14272 222 V-GDLVEHGPTD 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=309.36 Aligned_cols=190 Identities=49% Similarity=0.851 Sum_probs=160.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC--CCceeEEEEEEcCc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYITGDIRISGY 920 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~--~~~~~~G~i~i~g~ 920 (1106)
.+.++++++.++... ....+.+|+|+||+|++|++++|+||||||||||+++|+|.. + +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 477888888775210 001246999999999999999999999999999999999986 5 45899999998
Q ss_pred cCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 921 ~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
+......++.++|++|++.+++.+|+.||+.+....+ .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8754445667999999988888899999997642100 399999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||++|||||+.+|++|+|||||+|||+.+++.+.+.|+++.++|+|||++||+++.++.+.||++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999998777999999999986456778999999985 6887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=338.72 Aligned_cols=195 Identities=25% Similarity=0.388 Sum_probs=167.8
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-------hcccceEEEEccCCCCCCCCCH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
|+||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998663 58999999987532 1235679999999999999999
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
+||+.|+.... .....++.++++++.++|.+..++.+ .+||||||||++|||||+.+|++|||||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12233456889999999988777664 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1027 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+.++..+++.|+++.++ |+|||++||+++ ++...||++++|++ |+++..|+..
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 217 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPIA 217 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999998765 899999999997 57788999999985 7899988754
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=325.45 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=174.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCC-CCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 241 (1106)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999999998 999999998875432 2457999999874 67888
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|+++|+.|.....+.. ..+....++.+++.+||.+..++.+++
T Consensus 100 ~v~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------------------------------YDEMHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999999875432110 001122456789999998888877654
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. ..+++|+.++|+..++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKS-EHNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 324455556777777765 9999999999
Q ss_pred eEEEEcCHHHHHH---HHHhcCCCCC
Q 001291 402 QIVYQGPRELVLE---FFESMGFKCP 424 (1106)
Q Consensus 402 ~iv~~G~~~~~~~---~f~~~G~~~p 424 (1106)
++++.|+++++.+ .+...|+.+|
T Consensus 219 ~i~~~g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 219 TVYKEGTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred EEEEecCHHHHhcCHHHHHhcCCCCC
Confidence 9999999988743 3333444443
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=299.84 Aligned_cols=218 Identities=24% Similarity=0.365 Sum_probs=187.1
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCC
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSP 942 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~ 942 (1106)
++++.+++++|+.|++|.+++++|||||||||||.+++++.+ ..+|+|+++|.++.. ...++.++..-|+.....
T Consensus 11 y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 11 YGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred hCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 356789999999999999999999999999999999998765 358999999998753 345677788888887777
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
.+||+|-+.|+...+. .....++.+..++++++.++|.++.++.. .+||||||||..||+.|+++.+.++||||
T Consensus 89 rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 89 RLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred eeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCc
Confidence 8999999999865442 23345566778999999999999999875 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC--chhHHHHHHH
Q 001291 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH--HSCHLISYFE 1093 (1106)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~--~~~~~~~yf~ 1093 (1106)
.++||.+....+|+.|++++++ |+|||+|.||.++ ..-++|.|+-|++ |+++..|++.+ ..+.|-+.|+
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~eii~~~~L~eiyd 234 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDEIIQPEILSEIYD 234 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHHhcCHHHHHHHhc
Confidence 9999999999999999999876 9999999999986 5567899999985 79999999876 3445556554
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=325.09 Aligned_cols=229 Identities=20% Similarity=0.235 Sum_probs=179.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--C-ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478899987763 2469999999999999999999999999999999999642 1 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .|++||+.+..... ........++.+.++++.+++.. ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFP-KSIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 123567999999988777 49999998764222 11112233455778888888752 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 689999999987 4778899999998
Q ss_pred cCCEEEEEecCCCc-----hhHHHHHHHhC
Q 001291 1071 RGGREVYVGPLGHH-----SCHLISYFEVC 1095 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~~-----~~~~~~yf~~~ 1095 (1106)
+ |++++.|+..+. .....+||.+.
T Consensus 238 ~-G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (268)
T PRK14248 238 N-GDLVEYDQTEQIFTSPKQQKTEDYINGR 266 (268)
T ss_pred C-CEEEEeCCHHHHHhCCCChHHHHHHhcc
Confidence 5 789999875421 12345666543
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=324.83 Aligned_cols=209 Identities=25% Similarity=0.387 Sum_probs=172.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 6999999999999999999999999999999999999987 9999999987643321 357999999988889999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|.||+.++.... .+. . +. + .......++.+++.+||++..++.+++
T Consensus 102 v~e~l~~~~~~~-~~~-------~-------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 147 (265)
T PRK10575 102 VRELVAIGRYPW-HGA-------L-------GR-F--------------GAADREKVEEAISLVGLKPLAHRLVDS---- 147 (265)
T ss_pred HHHHHHhCcccc-ccc-------c-------cC-C--------------CHHHHHHHHHHHHHcCCHHHhcCCccc----
Confidence 999998753210 000 0 00 0 000123456789999998888888765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||..++..+.+.|++++... +++|+.++|+.+++.+++|+|++|++|+
T Consensus 148 -LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 148 -LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 99999999999999999999999999999999999999999999876432 4556677888899999999999999999
Q ss_pred EEEEcCHHHHH
Q 001291 403 IVYQGPRELVL 413 (1106)
Q Consensus 403 iv~~G~~~~~~ 413 (1106)
+++.|+.+++.
T Consensus 226 i~~~~~~~~~~ 236 (265)
T PRK10575 226 MIAQGTPAELM 236 (265)
T ss_pred EEEecCHHHhc
Confidence 99999987763
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=315.80 Aligned_cols=194 Identities=30% Similarity=0.443 Sum_probs=162.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999997 999999998875432 1357999999864 4678
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++....+.. . .+....++.+++.+||+...++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------E------------------------EEIEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCcHhhhcCCccc--
Confidence 99999998865322110 0 00112456788999998877877765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++..+||+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998764 3 45677788889999999999999999
Q ss_pred Ce
Q 001291 401 GQ 402 (1106)
Q Consensus 401 G~ 402 (1106)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=321.20 Aligned_cols=208 Identities=21% Similarity=0.308 Sum_probs=168.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCC--C---CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDE--F---VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~--~---~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5999999999999999999999999999999999998762 0138999999998752 1 1235799999999899
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+.+||.||+.++....+.... ..+....++.+++.+||.. ..++
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKS--------------------------------KKELDERVEWALKKAALWDEVKDRLND 145 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCC--------------------------------HHHHHHHHHHHHHHcCCccchhhhhcc
Confidence 999999999987543211000 0001123566788888742 3444
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|++++|+..++..+||+
T Consensus 146 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~ 217 (253)
T PRK14267 146 YPS-----NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDY 217 (253)
T ss_pred Chh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999998743 3 5667778888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+++++.
T Consensus 218 i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 218 VAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=322.62 Aligned_cols=238 Identities=22% Similarity=0.259 Sum_probs=186.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++|++++++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 478899988764 34699999999999999999999999999999999997653 14589999999
Q ss_pred ccCCh----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 920 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 920 ~~~~~----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
.+... ...++.++|++|++.+++ .|++||+.+...... ....+..+..+.++++.+++......... ..+.+
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234567999999988777 899999987643221 12233344456788899988643211111 12356
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||+|||||++|||||+.+|+||+|||||+|||+.+++.+.+.|+++.+ ++|||++||+++ ++.+.||++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999987 57788999999985 799
Q ss_pred EEEecCCCc-----hhHHHHHHHhCCCCcc
Q 001291 1076 VYVGPLGHH-----SCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1076 ~~~G~~~~~-----~~~~~~yf~~~~g~~~ 1100 (1106)
++.|+..+. .....+|+++.+|=-+
T Consensus 241 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (276)
T PRK14271 241 VEEGPTEQLFSSPKHAETARYVAGLSGDVK 270 (276)
T ss_pred EEeCCHHHHHhCcCcHHHHHHHhhcCCccc
Confidence 999876531 1235678888776443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=354.30 Aligned_cols=227 Identities=24% Similarity=0.320 Sum_probs=185.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++ ++.+|+|+||+|.+|+++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67888887663 34699999999999999999999999999999999998653 4899999998753
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.. ..++.+||++|++.+++.+||+||+.|+...+.. ........++.+.++++.+++.+..++.+ .+|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1235699999999888899999999886432210 11122334456889999999988777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++|.|||++|||++ ++.+.||++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999997 57788999999985 789999
Q ss_pred ecCCCc-hhHHHHHH
Q 001291 1079 GPLGHH-SCHLISYF 1092 (1106)
Q Consensus 1079 G~~~~~-~~~~~~yf 1092 (1106)
|+..+. ...+++++
T Consensus 223 ~~~~~~~~~~~~~~~ 237 (501)
T PRK10762 223 REVADLTEDSLIEMM 237 (501)
T ss_pred cCcCcCCHHHHHHHh
Confidence 887653 23344443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=367.26 Aligned_cols=211 Identities=24% Similarity=0.394 Sum_probs=175.1
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|+++ +++++|+|+||+|+||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999986542 1246999999999999999999999999999999999987 4 48999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+++ ..+++.++||+|++.++. .|++||+.++. ++.+ ++.++++++..++.+.. |..+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~-----~~~~----~eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN-----PDAS----DEQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC-----CCCC----HHHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 456788999999998875 69999998862 1222 34567777777776533 3345544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|++||+++ ..+.||+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 4699999999999999999999999999999999999999999999875 5899999999986 4678999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 559 -G~i~e~G~~~ 568 (588)
T PRK11174 559 -GQIVQQGDYA 568 (588)
T ss_pred -CeEeecCCHH
Confidence 7999998754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=315.67 Aligned_cols=194 Identities=25% Similarity=0.345 Sum_probs=159.4
Q ss_pred CCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001291 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFV 944 (1106)
Q Consensus 865 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~ 944 (1106)
.++++++|+|+||+|++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+
T Consensus 31 ~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~ 99 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPEL 99 (224)
T ss_pred hcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCC
Confidence 3456789999999999999999999999999999999999765 358999999975421 11112344678
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
||.||+.+....+. ......++.+.++++.+++.+..+..+ .+||+|||||++|||||+.+|++|||||||+
T Consensus 100 tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~ 171 (224)
T cd03220 100 TGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLA 171 (224)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 99999987654321 222334456788999999987777654 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||+.++..+++.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|
T Consensus 172 gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 172 VGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999998777899999999987 46778999999975 7887754
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=314.94 Aligned_cols=195 Identities=25% Similarity=0.380 Sum_probs=163.4
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-------hcccceEEEEccCCCC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCEQNDIH 940 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g~v~q~~~~ 940 (1106)
++.+ |+||+|++ |+++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+
T Consensus 12 ~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 86 (214)
T cd03297 12 DFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYAL 86 (214)
T ss_pred Ceee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCcc
Confidence 3445 99999999 99999999999999999999998653 58999999976531 1234579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001291 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1106)
Q Consensus 941 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLD 1020 (1106)
++.+|+.||+.+..... .....++.+.++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+||
T Consensus 87 ~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllD 156 (214)
T cd03297 87 FPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLD 156 (214)
T ss_pred CCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 88899999998764221 12234456788999999987666553 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||+|||+.+++.+.+.|++++++ |+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 157 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 157 EPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999999999765 899999999987 47788999999985 6887754
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.66 Aligned_cols=205 Identities=22% Similarity=0.292 Sum_probs=171.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCC-CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDN-HIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1106)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 45999999999999999999999999999999999999998 999999998875422 2457999999864 6778
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
.||.||+.++....+.. . .+....++.+++.+||....++.+..
T Consensus 97 ~tv~eni~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------R------------------------EEMIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998865422110 0 01112467788999998888877654
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++. ..+++|+.++|+..++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998765 32455666788888876 6999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=353.89 Aligned_cols=123 Identities=24% Similarity=0.290 Sum_probs=100.8
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCC---CeEEE
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANP---SIIFM 1019 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p---~illL 1019 (1106)
+|+.|++.|...+. . .....+.++.++|..+ .+... .+||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 67888877654321 0 1123578889999753 34442 469999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
||||+|||+.....+++.|+++.++|.|||+|+|+++ ..+.+|+++.|. +||++++.|+..
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~ 923 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTPE 923 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCHH
Confidence 9999999999999999999999888999999999986 346899999995 579999999754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=320.10 Aligned_cols=215 Identities=22% Similarity=0.309 Sum_probs=174.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcCc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISGY 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g~ 920 (1106)
++++|+++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67888887653 246999999999999999999999999999999999975421 25899999998
Q ss_pred cCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc----cccccCCC
Q 001291 921 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL----RQSLVGLP 991 (1106)
Q Consensus 921 ~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~----~~~~~~~~ 991 (1106)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+. .+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 143 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELNKP---- 143 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHhCC----
Confidence 7532 123567999999988777 899999987643221 11222344557888999888542 2332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++
T Consensus 144 -~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~ 220 (250)
T PRK14262 144 -GTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR 220 (250)
T ss_pred -hhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999865 799999999987 47788999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|+++..|+..
T Consensus 221 -G~i~~~g~~~ 230 (250)
T PRK14262 221 -GELIEYGPTR 230 (250)
T ss_pred -CEEEEecCHH
Confidence 7899888753
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=321.82 Aligned_cols=222 Identities=22% Similarity=0.257 Sum_probs=176.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||++++|+++||+|+||||||||+++|+|..++. ...|.|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478899988764 235999999999999999999999999999999999976532 1368999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ...++.++|++|++.+++ .|+.||+.+...... .....+..+.+.++++.+++.+..+..... .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 77521 234567999999988777 899999987643221 012223345678899999885422111111 134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecC-
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG- 1072 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~g- 1072 (1106)
.||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++|||++ ++.+.||++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 6999999999999999999999999999999999999999999999865 4899999999997 578899999999863
Q ss_pred ---CEEEEEecCC
Q 001291 1073 ---GREVYVGPLG 1082 (1106)
Q Consensus 1073 ---G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 229 ~~~G~i~~~~~~~ 241 (261)
T PRK14258 229 NRIGQLVEFGLTK 241 (261)
T ss_pred CcCceEEEeCCHH
Confidence 8999998764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=321.87 Aligned_cols=216 Identities=25% Similarity=0.265 Sum_probs=174.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc-
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP- 921 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~- 921 (1106)
.+.++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|..++ ..|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 378888887763 23699999999999999999999999999999999998653 47999999986
Q ss_pred ----CChh---c----ccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccc
Q 001291 922 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSL 987 (1106)
Q Consensus 922 ----~~~~---~----~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~ 987 (1106)
+... . .++.++|++|++. +.+.+|+.||+.+...... .......+..+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 1346999999974 4566899999876432211 1112234556788999999963 44444
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeE
Q 001291 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1066 (1106)
Q Consensus 988 ~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v 1066 (1106)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3469999999999999999999999999999999999999999999998764 899999999987 466789999
Q ss_pred EEEecCCEEEEEecCC
Q 001291 1067 FLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1067 ~~l~~gG~~~~~G~~~ 1082 (1106)
++|++ |++++.|+..
T Consensus 223 ~~l~~-g~i~~~~~~~ 237 (258)
T PRK11701 223 LVMKQ-GRVVESGLTD 237 (258)
T ss_pred EEEEC-CEEEEeCCHH
Confidence 99985 7999998754
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=316.06 Aligned_cols=197 Identities=25% Similarity=0.336 Sum_probs=169.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999998 999999998765322 35799999998888899999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.+.....+. ....+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999886543210 001245678899999888877765 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. . +.+|+.++|+..++.+++|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-Q-GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998753 3 445666778888899999999999999999
Q ss_pred EEcCHH
Q 001291 405 YQGPRE 410 (1106)
Q Consensus 405 ~~G~~~ 410 (1106)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=314.84 Aligned_cols=211 Identities=23% Similarity=0.343 Sum_probs=173.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++++|+++.++.. .+...+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5677887765310 012579999999999999999999999999999999999765 35899999998753
Q ss_pred hh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 QE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ..++.++|++|++.+++..|+.||+.+...... ....++....+.++++.+++.+..+..+ .+||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999988654321 1223444567889999999987766653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.+ .|+|||++||+++ +.+.||++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 4578999999985 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=319.70 Aligned_cols=220 Identities=22% Similarity=0.235 Sum_probs=173.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367788877653 246999999999999999999999999999999999975531 3579999999
Q ss_pred ccCC----hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 920 YPKK----QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 920 ~~~~----~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
.+.. ....++.++|++|++.+++ .|+.||+.+...... ....+..++.+.++++.+++.+........ .+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 7653 1234567999999988777 899999987643221 111223345677888888875321111111 1346
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 699999999997 57888999999985 789
Q ss_pred EEEecCC
Q 001291 1076 VYVGPLG 1082 (1106)
Q Consensus 1076 ~~~G~~~ 1082 (1106)
++.|+..
T Consensus 223 ~~~g~~~ 229 (249)
T PRK14253 223 VEHDDTQ 229 (249)
T ss_pred EEeCCHH
Confidence 9988754
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-35 Score=322.92 Aligned_cols=210 Identities=22% Similarity=0.377 Sum_probs=173.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 35999999999999999999999999999999999999987 9999999988754322 35699999999888899
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++..-.. + .. .. ........++.+++.+||++..++.+.+
T Consensus 97 tv~~~~~~~~~~~~-~----~~-------------~~------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 97 TVQELVARGRYPHQ-P----LF-------------TR------------WRKEDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred cHHHHHHhCccccc-c----cc-------------cC------------CCHHHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987531000 0 00 00 0000122456789999998877877765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+..++.+++|+|++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~-~~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999987643 3456677788889999999999999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=320.52 Aligned_cols=215 Identities=22% Similarity=0.276 Sum_probs=173.7
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc--eeEEEEEEcC
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGDIRISG 919 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~i~g 919 (1106)
..+.++|+++.++ +++|+|+||+|++||+++|+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3578889887652 25899999999999999999999999999999999976531 1579999999
Q ss_pred ccCChhcc-cceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 001291 920 YPKKQETF-ARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP---LRQSLVGLPGV 993 (1106)
Q Consensus 920 ~~~~~~~~-~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~---~~~~~~~~~g~ 993 (1106)
.++..... ++.++|++|++. +.+..|+.+++.+...... .. ..++.++++++.+++.+ ..+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KP--ADDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CC--hHHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643222 356999999974 3456799898866432211 11 12356789999999976 23443 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 469999999999999999999999999999999999999999999998764 899999999987 47788999999975
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 217 G~i~~~~~~~ 226 (254)
T PRK10418 217 GRIVEQGDVE 226 (254)
T ss_pred CEEEEecCHH
Confidence 7899988754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=322.90 Aligned_cols=216 Identities=22% Similarity=0.307 Sum_probs=174.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--------ccceEEEEcCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--------PERTAAYISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 236 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999999875223699999998764321 1356999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+++.+||+||+.++..... . ..... ... ...+....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTC--FSW---------------FTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhh--ccc---------------ccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999988642100 0 00000 000 00011235677899999998888877
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++.+. .+++|+.++|+..++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQN-DGITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 65 9999999999999999999999999999999999999999999987653 34667778888899999999999
Q ss_pred EecCCeEEEEcCHHHH
Q 001291 397 LLSDGQIVYQGPRELV 412 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1106)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.19 Aligned_cols=220 Identities=20% Similarity=0.237 Sum_probs=173.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|..++. +..|.|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 367788887653 246999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ...++.++|++|++.+++. |+.||+.+....+.. ...+..++.++++++.+++.+........ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLHK-SGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhhC-Ccc
Confidence 87532 1345679999999988774 999999886543211 11222344567788888875321111111 134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||+|||||++|||||+.+|++|+|||||+|||+.++..+.++|+++. +|+|||++||+++ ++.+.||++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 699999999999999999999999999999999999999999999985 5899999999997 47788999999975 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 224 i~~~~~~~ 231 (251)
T PRK14249 224 LVEYGRTG 231 (251)
T ss_pred EEEeCCHH
Confidence 99988765
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=314.63 Aligned_cols=195 Identities=25% Similarity=0.388 Sum_probs=164.9
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999998 9999999988754332 357999999998899999999998
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
++...... . . .+....++.+++.+||++..++.+.. |||||
T Consensus 93 ~~~~~~~~-~--------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-L--------T-------------------------AEDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccC-c--------c-------------------------HHHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 75421100 0 0 00122456789999999888887754 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEc
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG 407 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 407 (1106)
|||++||++++.+|++++|||||+|||..++..+.+.|+++... .+.+|+.++|+..++.++||++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAE-TKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999987543 3456666889999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=316.84 Aligned_cols=204 Identities=27% Similarity=0.434 Sum_probs=173.8
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999998 9999999998765322 457999999998899999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.++....+.. . .+....+..+++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------K------------------------KEIERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 999865332110 0 00112356688899999888888765 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.... +++++.++|..+++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999875533 4556667788889999999999999999999
Q ss_pred EcCHHHHH
Q 001291 406 QGPRELVL 413 (1106)
Q Consensus 406 ~G~~~~~~ 413 (1106)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=317.52 Aligned_cols=202 Identities=25% Similarity=0.318 Sum_probs=165.7
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc--eeEEEEEEcCccCChhcc-cceEEEEccCCC--CCCCCC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YITGDIRISGYPKKQETF-ARISGYCEQNDI--HSPFVT 945 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~g~v~q~~~--~~~~~t 945 (1106)
+|+|+||+|++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999976531 158999999987654322 357999999984 446689
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC---cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK---PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~---~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
+.|++.+...... ...+..++.+.++++.+++. +..+..+ ..||+||||||+|||||+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999876543221 11233445688999999997 3444442 46999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1023 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1023 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+|||+.++..+.+.|++++++ |+|||++||+++ ++...||++++|++ |+++..|+..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 211 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTVK 211 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999998764 899999999997 57788999999975 7899888754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=324.47 Aligned_cols=219 Identities=23% Similarity=0.376 Sum_probs=174.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ +++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 478889887763 124699999999999999999999999999999999998653 589999999876
Q ss_pred ChhcccceEEEEccCCCCC--CCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 923 KQETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~--~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.....++.++|++|++.+. ...++.+++.++...... ........+..++++++.+++.+..+..+ .+||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997643 234688887654211000 01112233445788999999987776654 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999987 477889999766 4 7999998
Q ss_pred cCCC
Q 001291 1080 PLGH 1083 (1106)
Q Consensus 1080 ~~~~ 1083 (1106)
+..+
T Consensus 224 ~~~~ 227 (272)
T PRK15056 224 PTET 227 (272)
T ss_pred CHHh
Confidence 8654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=318.17 Aligned_cols=213 Identities=25% Similarity=0.314 Sum_probs=170.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 566 9999999988754322 23489999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1106)
+.+|++|++.+......... +.... ...+....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~------------------~~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR------------------GEEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc------------------ccccc---------cHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999998654221000 00000 0011123467789999997 45666554
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDII 396 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~vi 396 (1106)
. .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++... +|+++
T Consensus 143 ~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 E----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-P-DRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred c----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CcEEEEEEecHHHHHhhcCCeEE
Confidence 1 3999999999999999999999999999999999999999999998753 3 45666678888888888 89999
Q ss_pred EecCCeEEEEcCHHHHH
Q 001291 397 LLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.35 Aligned_cols=225 Identities=25% Similarity=0.323 Sum_probs=177.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++... ..| ...++.+|+|+||+|++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP--SQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecc
Confidence 67788887764100 000 00135699999999999999999999999999999999997653 5899999998753
Q ss_pred hh------cccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 QE------TFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~~------~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
.. ..++.++|++|++. +.+..|+.|++.+..... ...........++++++.+++. ...+... .
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----P 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----c
Confidence 21 23567999999973 556789999987643211 1122334445688999999996 4555543 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++.+.||++++|+ +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 69999999999999999999999999999999999999999999998764 899999999987 4777899999997 47
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|+..+
T Consensus 229 ~i~~~g~~~~ 238 (268)
T PRK10419 229 QIVETQPVGD 238 (268)
T ss_pred EEeeeCChhh
Confidence 9999998765
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=315.60 Aligned_cols=200 Identities=27% Similarity=0.430 Sum_probs=162.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCC--CCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI--GEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1106)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999998 9999999987642 346799999987653 3489
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.++...... .+.. + ..+....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~~--------------~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR--------------L--------------SKADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--cccC--------------C--------------CHHHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999886431100 0000 0 001123467789999998878887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++++.++|+..++.+++|+|++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999998764 3 456777888899999999999999886
Q ss_pred EEEEc
Q 001291 403 IVYQG 407 (1106)
Q Consensus 403 iv~~G 407 (1106)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=321.47 Aligned_cols=216 Identities=24% Similarity=0.271 Sum_probs=175.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.++++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 25 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g 91 (272)
T PRK14236 25 ALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDG 91 (272)
T ss_pred EEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECC
Confidence 588999988763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ..+++.++|++|++.+++. |+.||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 92 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 165 (272)
T PRK14236 92 QNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN--- 165 (272)
T ss_pred EECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC---
Confidence 87532 2345679999999887775 99999987643321 1112233456788899988853 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ +.|||++||+++ ++.+.||++++|+
T Consensus 166 --~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 241 (272)
T PRK14236 166 --AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMY 241 (272)
T ss_pred --cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999975 799999999987 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 242 ~-G~i~~~g~~~ 252 (272)
T PRK14236 242 M-GKLVEYGDTD 252 (272)
T ss_pred C-CEEEecCCHH
Confidence 5 7899988754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=353.88 Aligned_cols=218 Identities=26% Similarity=0.309 Sum_probs=181.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++++ ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 70 (510)
T PRK09700 6 ISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINYN 70 (510)
T ss_pred EEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEECC
Confidence 67888887663 34699999999999999999999999999999999998653 4899999998764
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhc---CCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLR---LPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~---~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
.. ..++.+||++|++.+++.+||+||+.++.... ... ....+..++.+.++++.+++.+..+..+ .+
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (510)
T PRK09700 71 KLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----AN 145 (510)
T ss_pred CCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hh
Confidence 31 12346999999998888899999998754211 000 0122334456889999999987777664 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ .+...||++++|++ |++
T Consensus 146 LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i 223 (510)
T PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSS 223 (510)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999999878999999999987 47788999999985 789
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
++.|+..+
T Consensus 224 ~~~g~~~~ 231 (510)
T PRK09700 224 VCSGMVSD 231 (510)
T ss_pred eeecchhh
Confidence 99988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=328.75 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=169.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
.++|+|+|++|++|++++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++.+
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999998631 01289999999988531 225679999999876
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
+ ..||+||+.|+....+.. .. +.....++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~----------~~-----------------------~~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIN----------DR-----------------------KILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCC----------hH-----------------------HHHHHHHHHHHHHcCCcchhhhhhh
Confidence 6 589999999875432110 00 0011234556777777554445554
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
. .+..|||||||||+||||++.+|+||+|||||+|||+.+...+.++|+++.+ + .++++++|....+.+++|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 3 4556999999999999999999999999999999999999999999998643 3 5677788889999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|+++..|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=320.09 Aligned_cols=205 Identities=19% Similarity=0.270 Sum_probs=166.0
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|+..++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2111289999999887421 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 239 GEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
+ +||+||+.++.... +.. . .+....++.+++.+||. +..+
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS----------R------------------------AEMDERVEWALTKAALWNEVKDKLH 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC----------H------------------------HHHHHHHHHHHHHcCCChhhHHHHh
Confidence 7 89999999875432 110 0 01112456778888874 3344
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
..++ .||||||||++||+||+.+|++|+|||||+|||..++..+.+.|+++. .+ ++|+.++|+..++.+++|
T Consensus 152 ~~~~-----~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 152 QSGY-----SLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSD 223 (260)
T ss_pred cCCC-----CCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCC
Confidence 4444 499999999999999999999999999999999999999999999873 23 566778888889999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
++++|++|+++..|+.+++.
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 224 YTAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988774
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=358.74 Aligned_cols=212 Identities=28% Similarity=0.435 Sum_probs=176.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|+|+. +++++|+|+||+|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36899999999852 234699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~ 991 (1106)
+++ ..+++.++||+|++.++. .|++||+.++. .+. .++.++++++.+++.+..+ ..++..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA-----PYA----DDEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC-----CCC----CHHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 754 456788999999998876 69999998752 112 2344677888887765433 334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++. +++|+|+|||+++ ..+.||+|++|++
T Consensus 599 G-~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 G-RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 3 4699999999999999999999999999999999999999999999886 4899999999986 4578999999985
Q ss_pred CCEEEEEecC
Q 001291 1072 GGREVYVGPL 1081 (1106)
Q Consensus 1072 gG~~~~~G~~ 1081 (1106)
|++++.|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=321.03 Aligned_cols=207 Identities=21% Similarity=0.314 Sum_probs=166.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+|+|++|++|++++|+|||||||||||++|+|.++|. ...+|+|+++|.++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5999999999999999999999999999999999998741 01289999999887531 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+. ||.||+.|+....+.... . .+....++.+++.+||.+ ..++
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRLHE 159 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHhhC
Confidence 74 999999987543321000 0 001124567888899964 2344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|++++|+..++..++|+
T Consensus 160 ~~~-----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~ 231 (267)
T PRK14235 160 PGT-----GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQR 231 (267)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCE
Confidence 444 4999999999999999999999999999999999999999999998743 3 4666678888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
+++|++|+++.+|+.+++.
T Consensus 232 v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 232 TAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=320.78 Aligned_cols=209 Identities=26% Similarity=0.388 Sum_probs=172.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 36999999999999999999999999999999999999987 999999998765432 135699999998888889
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||.||+.|+..... ..+ ... ..+....++.+++.+||++..++.+++
T Consensus 92 tv~~~i~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLW----------------GRL------------SAEDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhh--hhc----------------cCC------------CHHHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999988631000 000 000 000123456788999998888887765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++.. . +++++.++|+..++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 3 456677788889999999999999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999988763
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=320.19 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=173.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999999997 9999999988765322 34699999998778889
Q ss_pred CHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 242 TVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
||+||+.++.. .... . . .+ ..+....++.+++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~~~----------~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHRSL----------W------A-GD--------------SPHDAAVVDRALARTELSHLADRDMST-- 137 (256)
T ss_pred CHHHHHHhcchhhhhh----------c------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCccc--
Confidence 99999988531 1000 0 0 00 001112456788999998888887765
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|+|++|++
T Consensus 138 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 138 ---LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998753 3 45677788888999999999999999
Q ss_pred CeEEEEcCHHHHH
Q 001291 401 GQIVYQGPRELVL 413 (1106)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1106)
|+++..|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=319.10 Aligned_cols=220 Identities=19% Similarity=0.220 Sum_probs=175.8
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC--c-eeEEEEEEc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRIS 918 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~i~ 918 (1106)
..+..+.+++++ ++..+|+|+||+|++||++||+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFY-------------GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEe-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 346666666554 345799999999999999999999999999999999997643 1 258999999
Q ss_pred CccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001291 919 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1106)
Q Consensus 919 g~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~ 993 (1106)
|.+... ...++.++|++|++.++ .+|+.||+.++...+. . .......+.++++.+++.+....... ...
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCc
Confidence 987532 13356799999998776 5999999988754331 1 12234567889999998643222111 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe---
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK--- 1070 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~--- 1070 (1106)
..||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++. +++|||++||+++ ++.+.||++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 5699999999999999999999999999999999999999999999985 4799999999997 4778999999997
Q ss_pred ----cCCEEEEEecCC
Q 001291 1071 ----RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ----~gG~~~~~G~~~ 1082 (1106)
++|++++.|+..
T Consensus 226 ~~~~~~G~i~~~g~~~ 241 (261)
T PRK14263 226 SQGTRTGYLVEMGPTA 241 (261)
T ss_pred ccccCCceEEEeCCHH
Confidence 468999998754
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=312.37 Aligned_cols=201 Identities=23% Similarity=0.293 Sum_probs=170.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+++++||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 478888887653 24699999999999999999999999999999999998663 479999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.....++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+++.+..+..+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~---~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---R---RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---C---cHHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543334568999999888888899999987643321 1 12345678899999987766654 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
|++|||+++.+|++|+|||||+|||+.+++.+++.|+++.++|+|||++||+++ ++.+.||+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999997 5888999999985
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=326.27 Aligned_cols=212 Identities=20% Similarity=0.290 Sum_probs=173.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+|+++.++. +...+|+||||+|++||+++|+|+||||||||+++|+|... .+|.|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678899887742 12358999999999999999999999999999999999864 369999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL------PGV 993 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~------~g~ 993 (1106)
.. ...++.++||+|++.+++ .|++||+.+.. ... ++.++++++.++|.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234567999999998876 59999995321 011 23467888999998766654321 123
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
..||+|||||++|||||+.+|+||+|||||++||+.+...+++.|+++. .++|||+|||+++ .+ ..||++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 4699999999999999999999999999999999999999999999875 4899999999986 34 46999999975 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|++.+
T Consensus 213 ~i~~~g~~~~ 222 (275)
T cd03289 213 KVRQYDSIQK 222 (275)
T ss_pred eEeecCCHHH
Confidence 9999998754
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=327.90 Aligned_cols=206 Identities=20% Similarity=0.303 Sum_probs=169.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC----C----CccceEEEEcCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----F----VPERTAAYISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~ 236 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35999999999999999999999999999999999999997 9999999987642 1 12357999999863
Q ss_pred -CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccc
Q 001291 237 -HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADT 314 (1106)
Q Consensus 237 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt 314 (1106)
.+...||+||+.|+....+.. . .+....++.+++.++|+ ...++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------K------------------------QEAYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhcC
Confidence 233469999999865322110 0 00112356678899994 56777
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+.+++.++||+
T Consensus 147 ~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~ 220 (289)
T PRK13645 147 SPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADE 220 (289)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCE
Confidence 6655 9999999999999999999999999999999999999999999987653 345666688888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=318.56 Aligned_cols=216 Identities=24% Similarity=0.320 Sum_probs=173.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 919 (1106)
.+.++|+++.++ .+++|+|+||+|++||++||+|+||||||||+++|+|..+ +. +..|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 367888887763 2469999999999999999999999999999999999764 11 2589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .|++||+.+....+. ....+..+..++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 123557999999988775 799999987643221 1112233456788899998852 22322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.||++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 346999999999999999999999999999999999999999999999854 799999999997 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |+++..|+..
T Consensus 221 ~-G~i~~~~~~~ 231 (251)
T PRK14251 221 N-GDLIEAGPTE 231 (251)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899888753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=322.51 Aligned_cols=216 Identities=21% Similarity=0.214 Sum_probs=172.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--C-ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 919 (1106)
.+.++|+++.++ +..+|+|+||+|++||++||+|+||||||||+++|+|..+ + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478999988764 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~ 990 (1106)
.+... ..+++.++|++|++.+++ .|+.||+.++...+. ....+..+..+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87531 234567999999988776 599999987643221 111222344567777777543 222322
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 799999999987 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 241 ~-G~i~~~g~~~ 251 (271)
T PRK14238 241 N-GYVNEYDDTD 251 (271)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=318.03 Aligned_cols=216 Identities=23% Similarity=0.300 Sum_probs=172.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--Cc-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~~-~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|.+||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 367888887663 2469999999999999999999999999999999999643 21 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.++++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999988777 6999999876433211 112222345677888887642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ +.|||++||+++ .+.+.||++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 589999999997 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |+++..|+..
T Consensus 222 ~-G~i~~~~~~~ 232 (252)
T PRK14255 222 T-GNLIEFADTK 232 (252)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=323.55 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=173.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--C-ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 919 (1106)
.+.++++++.++ +..+|+|+||+|++||+++|+|+||||||||+++|+|... + .+..|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578899988763 2359999999999999999999999999999999999642 1 12589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC----cccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK----PLRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~----~~~~~~~~~ 990 (1106)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .......++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCc-cCHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 123567999999988776 499999988643321 111223345677888888874 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999865 689999999997 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |++++.|+..
T Consensus 256 ~-G~i~~~g~~~ 266 (286)
T PRK14275 256 E-GVLVEHAPTA 266 (286)
T ss_pred C-CEEEEeCCHH
Confidence 5 7899988754
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=357.80 Aligned_cols=211 Identities=27% Similarity=0.407 Sum_probs=173.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|+|+.. +++++|+|+||+|+|||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~i 545 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVPL 545 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEEH
Confidence 58999999998631 134699999999999999999999999999999999998764 589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccc-------cccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ-------SLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~-------~~~~~~g 992 (1106)
++ ..+++.++||+|++.++. .|++||+.++. .+.+ ++.+.++++..++.+..+ ..++..|
T Consensus 546 ~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~-----~~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~G 615 (711)
T TIGR00958 546 VQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL-----TDTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKG 615 (711)
T ss_pred HhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC-----CCCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCCC
Confidence 54 446678999999998775 79999998763 1111 345678888888776543 3344333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+++|+||+||||||+||+++++.+++ .. ..+++|+|+|||+++ ..+.||+|++|++
T Consensus 616 -~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~- 688 (711)
T TIGR00958 616 -SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK- 688 (711)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC-
Confidence 4699999999999999999999999999999999999999998 22 235899999999986 4678999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 689 G~ive~Gt~~ 698 (711)
T TIGR00958 689 GSVVEMGTHK 698 (711)
T ss_pred CEEEEeeCHH
Confidence 7999999853
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=322.29 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=174.3
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRIS 918 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~ 918 (1106)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +..|.|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3588899988763 246999999999999999999999999999999999975321 247999999
Q ss_pred CccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccC
Q 001291 919 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVG 989 (1106)
Q Consensus 919 g~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~ 989 (1106)
|.+... ..+++.++|++|++.+++ .|+.||+.+....+. . ....++.+.++++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFP-KSIYENIAFAPRANG---Y-KGNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCcccc-ccHHHHHHhHHHhcC---c-hHHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 234567999999988776 499999987643221 1 1122344677788888742 22222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 990 ~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+.++|+++.+ ++|||++||+++ ++.+.||++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 346999999999999999999999999999999999999999999999865 799999999997 578899999999
Q ss_pred e--------cCCEEEEEecCCC
Q 001291 1070 K--------RGGREVYVGPLGH 1083 (1106)
Q Consensus 1070 ~--------~gG~~~~~G~~~~ 1083 (1106)
+ +.|++++.|+..+
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~~ 255 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTEQ 255 (274)
T ss_pred ecccccccccCceEEEeCCHHH
Confidence 7 2589999998753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=316.97 Aligned_cols=207 Identities=21% Similarity=0.315 Sum_probs=167.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCCC-----ccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1106)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35999999999999999999999999999999999998751 013899999999875321 24569999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
++ +||+||+.|.....+.... .+....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhh
Confidence 77 8999999987543221000 00112355678888874 2344
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
..++ .||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.. + .++++++|+..++.++||
T Consensus 143 ~~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 143 KSAL-----KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSD 214 (251)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcC
Confidence 4444 4999999999999999999999999999999999999999999998753 3 456667788889999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=321.24 Aligned_cols=214 Identities=22% Similarity=0.273 Sum_probs=173.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++++++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 478899987763 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++. |+.||+.+....+. .. ...+..++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YD-GDIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---Cc-HHHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999877774 99999987654321 11 123456788999998853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE-EE
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF-LM 1069 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~-~l 1069 (1106)
+.+||+|||||++|||||+.+|+||||||||+|||+.++..+.++|+++++ ++|||++||+++ ++.+.||+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 346999999999999999999999999999999999999999999999976 489999999987 4777899976 45
Q ss_pred ecCCEEEEEecCC
Q 001291 1070 KRGGREVYVGPLG 1082 (1106)
Q Consensus 1070 ~~gG~~~~~G~~~ 1082 (1106)
+ .|++++.|+..
T Consensus 254 ~-~G~i~~~g~~~ 265 (285)
T PRK14254 254 T-GGELVEFDDTD 265 (285)
T ss_pred e-CCEEEEeCCHH
Confidence 6 57899988753
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=322.28 Aligned_cols=207 Identities=23% Similarity=0.265 Sum_probs=171.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCC--CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN--HIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999998 9999999988753211 246999999864 567
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccC
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 318 (1106)
.+||.|++.+..+.... .. ..+....++.+++.+||. ...++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LE------------------------PEQREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccC---------CC------------------------HHHHHHHHHHHHHHcCCChHHHhcCchh
Confidence 88999999886543210 00 001122456789999994 566766654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|++++|+..++..+||++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEK-QGISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCcEEEEEeCCHHHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999987643 3456666888889999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=350.71 Aligned_cols=220 Identities=24% Similarity=0.356 Sum_probs=179.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++++|+||||+|++|+++||+||||||||||+++|+|..++++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 45677777653 34699999999999999999999999999999999997654235899999998764
Q ss_pred hh----cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC-CCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCC
Q 001291 924 QE----TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~~g~~~LS 997 (1106)
.. ..++.+||++|++.+++.+|+.||+.+....+... ....+..++.++++++.+++.+.. +..+ .+||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 31 12356999999998888899999998764322111 112233445688999999997654 3333 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++.+.||++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999987 47788999999985 68999
Q ss_pred EecCCC
Q 001291 1078 VGPLGH 1083 (1106)
Q Consensus 1078 ~G~~~~ 1083 (1106)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 887764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=318.11 Aligned_cols=216 Identities=26% Similarity=0.273 Sum_probs=174.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|..... +.+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 477888887763 246999999999999999999999999999999999964321 2479999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGL 990 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~ 990 (1106)
.+... ...++.++|++|++.+++ .||+||+.|....+. .......+..+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFP-KSIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCc-ccHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87542 233567999999988877 499999988754321 1122334456788888888743 22232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+..||+|||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 346999999999999999999999999999999999999999999999875 689999999987 4778899999998
Q ss_pred cCCEEEEEecCC
Q 001291 1071 RGGREVYVGPLG 1082 (1106)
Q Consensus 1071 ~gG~~~~~G~~~ 1082 (1106)
+ |+++..|+..
T Consensus 223 ~-G~i~~~g~~~ 233 (253)
T PRK14261 223 L-GKLIEFDKTT 233 (253)
T ss_pred C-CEEEEcCCHH
Confidence 5 7899988754
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=311.05 Aligned_cols=199 Identities=22% Similarity=0.330 Sum_probs=167.4
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 457999999999999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.+...... ... .+....++.+++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9987542110 000 00112356789999998888887765 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.. ..+++|+.++|+..++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 9999999999999999999999999999999999999999998754 335666668888889999999999999999998
Q ss_pred EcC
Q 001291 406 QGP 408 (1106)
Q Consensus 406 ~G~ 408 (1106)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=315.81 Aligned_cols=202 Identities=24% Similarity=0.409 Sum_probs=170.9
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999997 9999999998754322 357999999998899999999998
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+.... ... .. ......++.+++.+||++..++.+.. |||||
T Consensus 94 ~~~~~-~~~--------~~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--------LN-------------------------AAQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccC--------CC-------------------------HHHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 000 00 00123467789999999888888765 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999876533 4556667888889999999999999999999999
Q ss_pred HHHHHH
Q 001291 409 RELVLE 414 (1106)
Q Consensus 409 ~~~~~~ 414 (1106)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887753
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=355.36 Aligned_cols=213 Identities=26% Similarity=0.398 Sum_probs=175.7
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|.|+. +++.+|+|+||+|++|+++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 36899999998852 224599999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
.++ ..+++.+|||+|++.+++ .|++||+.++. .+. .++.+.++++..++.+.. +..++..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~----~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGA----PFEHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCC----CHHHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 754 456778999999988775 69999997642 112 133456777777766543 3334433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. .|+|+|++||+++ ..+.||++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 35799999999999999999999999999999999999999999999884 5899999999996 3467999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 667 -G~i~~~g~~~ 676 (694)
T TIGR01846 667 -GQIAESGRHE 676 (694)
T ss_pred -CEEEEeCCHH
Confidence 7999999754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.27 Aligned_cols=207 Identities=22% Similarity=0.338 Sum_probs=167.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|.- ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 59999999999999999999999999999999999986410 1289999999876421 1235799999998889
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----ccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1106)
+.+||+||+.++....+... . .+....++.+++.+||. +..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRN---------K------------------------KDLDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 99999999998754321000 0 01122456678888884 33455
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+
T Consensus 145 ~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 145 PGG-----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999998742 3 4666688888999999999
Q ss_pred EEEec------CCeEEEEcCHHHHH
Q 001291 395 IILLS------DGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~------~G~iv~~G~~~~~~ 413 (1106)
|++|+ +|++++.|+++++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99996 79999999998774
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=321.01 Aligned_cols=210 Identities=26% Similarity=0.388 Sum_probs=161.1
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++. ++..+|+|+||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 68 (237)
T cd03252 2 TFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLAL 68 (237)
T ss_pred EEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHh
Confidence 46777766531 124599999999999999999999999999999999998653 47999999987532
Q ss_pred ---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHH-----HHHHHHHHHc--CCCcccccccCCCCCC
Q 001291 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK-----MFIEEVMELV--ELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 925 ---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~l~~~~~~~~~~~g~~ 994 (1106)
..+++.++|++|++.+++ .||.||+.+... ........ ..++++++.+ ++....+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~ 137 (237)
T cd03252 69 ADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GA 137 (237)
T ss_pred cCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CC
Confidence 234567999999987664 699999976431 11111110 0112233333 233222222 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999986 4899999999997 35 57999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 214 i~~~~~~~ 221 (237)
T cd03252 214 IVEQGSHD 221 (237)
T ss_pred EEEEcCHH
Confidence 99988753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=315.16 Aligned_cols=206 Identities=26% Similarity=0.413 Sum_probs=174.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++.+|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999987 9999999988764332 3579999999988889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+.....+.. . ......++.+++.++|....++.+++
T Consensus 90 ~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------K------------------------AKIKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 99999875432110 0 00112356788999998877877765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||++||++++.+|++++|||||+|||..+...+.+.|+++.. ..+.+++.++|...++.+++|+|++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHD-EVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998754 3245566677888889999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988774
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=309.06 Aligned_cols=196 Identities=27% Similarity=0.411 Sum_probs=172.5
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-----C--ccceEEEEcCCCCCCCCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-----V--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|+|.+||..+.+. . .+|.+|||+|+-.+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 477777765799999999999999999999999999 99999999876322 1 2588999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+-||.|+...-. ....+++...||++|..+.+.+.
T Consensus 93 VrgNL~YG~~~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~~---- 128 (352)
T COG4148 93 VRGNLRYGMWKSM----------------------------------------RAQFDQLVALLGIEHLLDRYPGT---- 128 (352)
T ss_pred Eecchhhhhcccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCCc----
Confidence 9999999864210 11246788999999999998876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++... -+.-|+.++|...|+..++|+|++|++|+
T Consensus 129 -LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred -cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 9999999999999999999999999999999999999999999998764 45667789999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999999853
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=313.33 Aligned_cols=195 Identities=25% Similarity=0.390 Sum_probs=164.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-----CccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 239 (1106)
.++|+|+|++++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999999987 99999999887421 12457999999998888
Q ss_pred CCCHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 240 EMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
.+||+||+.++.. .++.. ..+....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------------------------------KAEAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCHhHhhhCccc
Confidence 9999999988642 11100 001122456788999998888887765
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+|++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-E-GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998764 3 455666888999999999999999
Q ss_pred cCCeE
Q 001291 399 SDGQI 403 (1106)
Q Consensus 399 ~~G~i 403 (1106)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=350.43 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=180.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378889988764 24699999999999999999999999999999999998653 489999999875
Q ss_pred Chh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
... . .++.+||++|++.+++.+||.||+.|.... ....++.+.++++.+++.+..+..+ .+|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 321 1 124589999999888899999999875311 1233456789999999987777664 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ .+.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999987 47788999999985 789999
Q ss_pred ecCCC
Q 001291 1079 GPLGH 1083 (1106)
Q Consensus 1079 G~~~~ 1083 (1106)
|+..+
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 88764
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=317.36 Aligned_cols=211 Identities=20% Similarity=0.270 Sum_probs=167.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35999999999999999999999999999999999998641 01389999999887531 124579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++ .||+||+.++.+..+... ..+....+..+++.++|..+.+....
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD---------------------------------KKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 77 699999998754321100 00112345667888888543222221
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
...+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+.+++.++||++++
T Consensus 159 -~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 159 -KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred -CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEE
Confidence 2334599999999999999999999999999999999999999999999873 23 5667778888899999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|++++.|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998874
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=315.27 Aligned_cols=205 Identities=19% Similarity=0.263 Sum_probs=167.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC---CCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~ 238 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++ |+ +|+|+++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKI---DGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCC---ceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 369999999999999999999999999999999999975 45 899999999876432 245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+ .||+||+.++...++... . .......++.+++.+||.. ..+.
T Consensus 92 ~-~tv~eni~~~~~~~~~~~-------------------~-------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (246)
T PRK14269 92 V-KSIYENISYAPKLHGMIK-------------------N-------------KDEEEALVVDCLQKVGLFEEVKDKLKQ 138 (246)
T ss_pred c-ccHHHHhhhHHhhcCccc-------------------C-------------hHHHHHHHHHHHHHcCCChhhhHHhcC
Confidence 6 699999998754322100 0 0011223567888999853 2333
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
. .+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++. . ++++++++|+..++.+++|+
T Consensus 139 ~-----~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~tH~~~~~~~~~d~ 210 (246)
T PRK14269 139 N-----ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--H-NLSMIMVTHNMQQGKRVADY 210 (246)
T ss_pred C-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEecCHHHHHhhCcE
Confidence 3 34599999999999999999999999999999999999999999999864 2 45677788889999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+.+++.
T Consensus 211 i~~l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 211 TAFFHLGELIEFGESKEFF 229 (246)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=308.83 Aligned_cols=184 Identities=27% Similarity=0.329 Sum_probs=158.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCCH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
+.+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++..|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4699999999999999999999999999999999998663 47999999977532 2345679999999888888999
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
+||+.+.... . .++.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-------H--SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-------c--cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999775311 0 2345788999999987766553 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
|+.++..+++.|+++.++|+|+|++||++. ++...+|+++.+
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998777999999999986 577889998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=315.56 Aligned_cols=203 Identities=23% Similarity=0.273 Sum_probs=167.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC----CCCceeEEEECCccCCCCCc-cceEEEEcCCCC--CC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP----SLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDN--HI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~ 238 (1106)
++|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|.++..... ++.++||+|++. +.
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~---~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT---AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCc---CCEEEECCeeccccccccceEEEEecCCccccC
Confidence 589999999999999999999999999999999999988 6 9999999988753322 257999999864 44
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc---ccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI---CADTM 315 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~ 315 (1106)
+.+|+.+++.+.++..+.. . ....++.+++.+||.+ ..++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~----------~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (254)
T PRK10418 94 PLHTMHTHARETCLALGKP----------A--------------------------DDATLTAALEAVGLENAARVLKLY 137 (254)
T ss_pred ccccHHHHHHHHHHHcCCC----------h--------------------------HHHHHHHHHHHcCCCChhhhhhcC
Confidence 6689999987654322110 0 0123566888999976 34555
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|++
T Consensus 138 ~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v 211 (254)
T PRK10418 138 PFE-----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDV 211 (254)
T ss_pred Ccc-----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEE
Confidence 544 9999999999999999999999999999999999999999999987653 3456667788889999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 212 AVMSHGRIVEQGDVETLF 229 (254)
T ss_pred EEEECCEEEEecCHHHHh
Confidence 999999999999988774
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=315.52 Aligned_cols=208 Identities=22% Similarity=0.299 Sum_probs=168.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|.++|.++... ..++.++|++|+..+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 359999999999999999999999999999999999986 3111289999999887431 124679999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----ccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 313 (1106)
++.+||+||+.++.+..+... . .+....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------R------------------------SEADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------H------------------------HHHHHHHHHHHHHcCCchhhhHHhh
Confidence 999999999988654321000 0 001123566788888854 234
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
+.++ .||||||||++||++|+.+|++++|||||+|||+.++.++.+.|+++.. + ++|++++|+..++.++||
T Consensus 144 ~~~~-----~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 144 SNAM-----ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSD 215 (252)
T ss_pred CCcC-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCC
Confidence 4444 4999999999999999999999999999999999999999999998753 3 566777888899999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=361.77 Aligned_cols=213 Identities=29% Similarity=0.433 Sum_probs=177.7
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|.|+. ++++|+|+||+++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999999862 34699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-------ccccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-------LRQSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-------~~~~~~~~~ 991 (1106)
+++ ..+++.++||+|++.++. -|++||+.++.. +.. ++.++++++..++.+ -.|..+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at----~eei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DAT----DEEIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccceecCC
Confidence 754 456788999999998887 899999988731 122 234566666655443 245566643
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| ..||||||||++||||++++|+||+||||||+||+++++.|++.++++. +|+|+|+|+|+++. .+.||+|++|++
T Consensus 463 G-~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst--i~~aD~IiVl~~ 538 (567)
T COG1132 463 G-VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST--IKNADRIIVLDN 538 (567)
T ss_pred C-ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH--HHhCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999999876 57999999999973 456999999986
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 539 -G~i~e~G~h~e 549 (567)
T COG1132 539 -GRIVERGTHEE 549 (567)
T ss_pred -CEEEEecCHHH
Confidence 68999998643
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=316.81 Aligned_cols=207 Identities=24% Similarity=0.348 Sum_probs=169.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc-----CCCCCc-------cceEEEEc
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN-----MDEFVP-------ERTAAYIS 232 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 232 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999998 9999999987 544321 23699999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc
Q 001291 233 QHDN--HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI 310 (1106)
Q Consensus 233 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1106)
|++. +++.+|+.||+.+.....+. . + ..+....++++++.+|+..
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~--~--------------------~-----------~~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGA--R--------------------H-----------YGDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhcc--C--------------------c-----------HHHHHHHHHHHHHHcCCCh
Confidence 9863 57788999999764321110 0 0 0001224567889999974
Q ss_pred -cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHH
Q 001291 311 -CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1106)
Q Consensus 311 -~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 389 (1106)
..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.+...+.+.|+++... .+.+|+.++|+..++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 56666654 9999999999999999999999999999999999999999999987543 3566777889999999
Q ss_pred hhcCeEEEecCCeEEEEcCHHHHH
Q 001291 390 NLFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 390 ~~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+++|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=308.82 Aligned_cols=199 Identities=22% Similarity=0.297 Sum_probs=163.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++||++||+|+||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 45667776553 34699999999999999999999999999999999998663 5899999998753
Q ss_pred h--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 924 Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
. ...++.++|++|++.+++.+|+.||+.+....+. . ..++.++++++.+++.+..+..+ ..||+|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHH
Confidence 2 2345678999999888888999999987653321 1 22346788999999987766653 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++|+|||++||+++ .+.+..+|++.+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999998777899999999987 354434555544
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=315.68 Aligned_cols=206 Identities=18% Similarity=0.266 Sum_probs=166.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC---CCCCCCceeEEEECCccCCCCC-----ccceEEEEcCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK---LDPSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|. ++|. ..+|+|.++|.++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 3599999999999999999999999999999999997 3331 12899999999875421 1357999999987
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc----c
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC----A 312 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~----~ 312 (1106)
+++ .||+||+.++.+..+... .......++++++.+||.+. .
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD---------------------------------NAFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 699999998754322100 00011245677888998643 3
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001291 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1106)
Q Consensus 313 dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1106)
+..+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.++|
T Consensus 141 ~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~ 212 (250)
T PRK14245 141 KESA-----FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVS 212 (250)
T ss_pred hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhC
Confidence 4444 3499999999999999999999999999999999999999999999873 24 55666888889999999
Q ss_pred CeEEEecCCeEEEEcCHHHHH
Q 001291 393 DDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1106)
|+|++|++|++++.|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=349.14 Aligned_cols=215 Identities=29% Similarity=0.351 Sum_probs=178.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i~ 69 (501)
T PRK11288 5 LSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEMR 69 (501)
T ss_pred EEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 67888887763 34699999999999999999999999999999999998653 4899999998753
Q ss_pred h----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 924 Q----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 924 ~----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
. ..+++.+||++|++.+++.+||.||+.++...+..........++.+.++++.+++.+..+..+ .+||||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 144 (501)
T PRK11288 70 FASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIG 144 (501)
T ss_pred CCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHH
Confidence 2 1234579999999988888999999988642111111123344556889999999986666553 469999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
||||++|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||++++|++ |+++..+
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~ 222 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeec
Confidence 999999999999999999999999999999999999999999878999999999997 47788999999985 6888766
Q ss_pred c
Q 001291 1080 P 1080 (1106)
Q Consensus 1080 ~ 1080 (1106)
+
T Consensus 223 ~ 223 (501)
T PRK11288 223 D 223 (501)
T ss_pred C
Confidence 4
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=356.65 Aligned_cols=209 Identities=27% Similarity=0.421 Sum_probs=169.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1106)
++++|+|+|++++|||.+||+||||||||||+++|.|+++|+ +|+|.+||.++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 356999999999999999999999999999999999999998 9999999999887654 578999999887776
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
.||+|||.++..- .+.++..+++... ..+..+ ..|++..||.||+ .
T Consensus 417 ~TI~~NI~~g~~~-------------------------at~eei~~a~k~a------~~~d~I--~~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGRPD-------------------------ATDEEIEEALKLA------NAHEFI--ANLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCCCC-------------------------CCHHHHHHHHHHh------ChHHHH--HhCcccccceecC-C
Confidence 8999999997421 0001111111100 011122 2457788999994 5
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
+..||||||||++||||++.+|+||+||||||+||+.+...|.+.++++. +++|+++ +.|..+.+.+ +|+|++|++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti~~-aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTIKN-ADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHHHh-CCEEEEEEC
Confidence 56699999999999999999999999999999999999999999998654 3467776 6666655544 999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|++++.|+++++..
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999975
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=316.35 Aligned_cols=221 Identities=24% Similarity=0.295 Sum_probs=174.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++++++.++ ++.+|+||||+|++||++||+|+||||||||+++|+|.....+..|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 377888887663 2469999999999999999999999999999999999621124589999999876
Q ss_pred Chh---cccc-eEEEEccCCCCCCCCCHHHHHHHhhhhcCC----CCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001291 923 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLFYSAWLRLP----PEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1106)
Q Consensus 923 ~~~---~~~~-~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~ 993 (1106)
... ...+ .++|++|++.+++.+|+.+++.+....... ...........+.++++.+++. ...+....
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 431 1222 478999999888889999998765322110 0111222345678899999996 34444421
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~g 1072 (1106)
.+||||||||++|||||+.+|+||+|||||+|||+.++..+++.|+++.++|+|||++||+++. +... ||++++|+ +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEe-C
Confidence 2499999999999999999999999999999999999999999999988779999999999873 5555 89999997 4
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 228 G~i~~~~~~~ 237 (252)
T CHL00131 228 GKIIKTGDAE 237 (252)
T ss_pred CEEEEecChh
Confidence 7999998764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.52 Aligned_cols=216 Identities=27% Similarity=0.390 Sum_probs=185.0
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDIHSP 942 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~~~~~ 942 (1106)
+..++|+||||++++||++||+|.||||||||+|+|+|..+ +.+|+|.++|.+... ......|+.|.|+..+.|
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 45689999999999999999999999999999999999776 458999999987642 233456899999999999
Q ss_pred CCCHHHHHHHhhhhcC-CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 943 FVTVYESLFYSAWLRL-PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~-~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
++||.||+.++...+. ..-.+.+...+...++|+.+++....+.+++ +||.||||.|.|||||..+++||+|||
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~arllIlDE 171 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDE 171 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999988866543 2345667777888999999998533555543 699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec-CCC-chhHHHHH
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP-LGH-HSCHLISY 1091 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~-~~~-~~~~~~~y 1091 (1106)
|||+|+....+.+.+.+++++++|.+||+|||+++ ++++.|||+.+|.+ |+.+..++ .++ +..++++.
T Consensus 172 PTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 172 PTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHH
Confidence 99999999999999999999999999999999998 79999999999985 78888888 354 33344444
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=348.66 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=173.3
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----hcccceEEEEccCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----ETFARISGYCEQNDIHSPF 943 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~g~v~q~~~~~~~ 943 (1106)
++++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35699999999999999999999999999999999998653 48999999987532 1234569999999888888
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCC
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPT 1023 (1106)
+||.||+.++...........+...+.++++++.+++....++.+ .+|||||||||+|||||+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987542111111122334456889999999987766653 469999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1024 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1024 sgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
+|||+.++..+++.|++++++|+|||++|||++ ++...||++++|++ |+++..|+...
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 999999999999999999888999999999987 57788999999985 79999988665
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=314.76 Aligned_cols=206 Identities=22% Similarity=0.337 Sum_probs=165.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|+++... ..++.++||+|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 59999999999999999999999999999999999853 5222389999999887421 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+ +||+||+.++....+.... ......++.+++.+|+.. ..+.
T Consensus 99 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRLHD 144 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHHhc
Confidence 6 8999999987543221000 001123456677888743 2344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ + .+|+.++|+.+++.++||+
T Consensus 145 ~~~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 216 (252)
T PRK14239 145 SAL-----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDR 216 (252)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCE
Confidence 443 4999999999999999999999999999999999999999999998743 3 5666788888899999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+.+++.
T Consensus 217 i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 217 TGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=316.52 Aligned_cols=206 Identities=20% Similarity=0.319 Sum_probs=165.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|++|++|++++|+|||||||||||++|+|.++ |+...+|+|+++|.++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 59999999999999999999999999999999999986 3212389999999987421 1235799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+. ||+||+.|.....+... ..+....++.+++.+||.+ ..++
T Consensus 106 ~~-tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~l~~ 151 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKN---------------------------------KKKLQEIVEKSLKDVALWDEVKDRLHT 151 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCC---------------------------------HHHHHHHHHHHHHHcCCchhhhhhhhC
Confidence 75 99999998654321100 0001123556788888853 2344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+ +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+++.++|+..++.+++|+
T Consensus 152 ~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~ 223 (259)
T PRK14274 152 QA-----LSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK--EK-YTIVIVTHNMQQAARVSDQ 223 (259)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEEcCHHHHHHhCCE
Confidence 44 4599999999999999999999999999999999999999999999874 23 5566678888899999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
+++|++|+++.+|+++++.
T Consensus 224 i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 224 TAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=299.88 Aligned_cols=168 Identities=28% Similarity=0.427 Sum_probs=147.2
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ +..+|+|+||++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 4567766553 23599999999999999999999999999999999998653 48999999987543
Q ss_pred --hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 925 --ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 925 --~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...++.++|++|++.+++..|+.||+. ||+||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999988888889998862 7999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
|++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999987 477789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=312.87 Aligned_cols=210 Identities=22% Similarity=0.334 Sum_probs=169.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++++++|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478888887663 2469999999999999999999999999999999999765 3589999999765
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~ 998 (1106)
.. ...++.++|++|++.+++ .|++||+.+....+.. . ..+..++++++.+++. ...+..+ .+||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKNI-----AELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCH
Confidence 32 224567899999988776 5999999875433211 1 1234567899999995 3455443 46999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|||++||+++. + +.||++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHh
Confidence 999999999999999999999999999999999999999999875 48999999999873 5 57999999964444455
Q ss_pred Eec
Q 001291 1078 VGP 1080 (1106)
Q Consensus 1078 ~G~ 1080 (1106)
.|.
T Consensus 219 ~~~ 221 (225)
T PRK10247 219 EAR 221 (225)
T ss_pred hhh
Confidence 554
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-35 Score=366.18 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=164.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|++++||+.++|+||||||||||+|+|+|+++|+ +|+|.+||.++.+..+ ++.++||+|++.+| +.
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM-SG 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999887654 57899999988766 46
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|++|||.++.. . +. +...+++ +.++ .+..+ -.|+...||.+|+ .+
T Consensus 542 TI~eNi~~~~~-~---~~-e~i~~al---~~a~------------------------l~~~i--~~lp~G~dt~ige-~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---TL-DEAWEAA---RMAG------------------------LAEDI--RAMPMGMHTVISE-GG 586 (686)
T ss_pred cHHHHHhcCCC-C---CH-HHHHHHH---HHcC------------------------cHHHH--HhccccccccccC-CC
Confidence 99999998632 0 00 0000100 0000 01111 1356678999996 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++||||++.+|++|+||||||+||+.+..++.+.|+++ ++|+|+ ++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 679999999999999999999999999999999999999999999864 355544 55554 456779999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++.+|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=323.48 Aligned_cols=232 Identities=24% Similarity=0.278 Sum_probs=180.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC---ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~---~~~~G~i~i~g 919 (1106)
.+.++|+++.++ ++.+|+++||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899887763 24699999999999999999999999999999999997531 13589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC---------CCC-hHHHHHHHHHHHHHcCCCc--
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP---------EVN-SETRKMFIEEVMELVELKP-- 982 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~---------~~~-~~~~~~~v~~~l~~~~l~~-- 982 (1106)
.++.. ...++.++|++|++.+++ .|++||+.+....+... ... .+..++.+.++++.+++.+
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 123467999999988776 59999998764321100 011 1223456788899998743
Q ss_pred --ccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHH
Q 001291 983 --LRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1060 (1106)
Q Consensus 983 --~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~ 1060 (1106)
..+.. +.+||+|||||++|||||+.+|+||||||||+|||+.++..++++|+++++ +.|||++||+++ .+.
T Consensus 191 ~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~ 263 (305)
T PRK14264 191 NDRLDDN-----ALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAA 263 (305)
T ss_pred hHHhcCc-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHH
Confidence 22322 356999999999999999999999999999999999999999999999876 589999999997 477
Q ss_pred HhcCeEE-EEecCCEEEEEecCCCc-----hhHHHHHHHhCC
Q 001291 1061 EAFDELF-LMKRGGREVYVGPLGHH-----SCHLISYFEVCP 1096 (1106)
Q Consensus 1061 ~~~D~v~-~l~~gG~~~~~G~~~~~-----~~~~~~yf~~~~ 1096 (1106)
+.||+++ +|+ .|++++.|+..+. ...+.+||.+.+
T Consensus 264 ~~~d~i~~~l~-~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~ 304 (305)
T PRK14264 264 RISDQTAVFLT-GGELVEYDDTDKIFENPESQRVEDYITGKF 304 (305)
T ss_pred HhcCEEEEEec-CCEEEEeCCHHHHHhCcccHHHHHHhcccc
Confidence 8899975 566 5799999886431 223556777654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=318.69 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=163.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEECCccCCCC-----CccceEEEEcCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHD 235 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d 235 (1106)
.+|+|+|++|++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~---~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 103 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL---KGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC---ceEEEECCEEcccccCCHHHHhhceEEEccCC
Confidence 59999999999999999999999999999999999987 35 89999999876421 1235699999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cc
Q 001291 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----IC 311 (1106)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~ 311 (1106)
.+++ .||+||+.+++...+... +....++.+++.+++. +.
T Consensus 104 ~l~~-~tv~enl~~~~~~~~~~~-----------------------------------~~~~~~~~~l~~~~l~~~l~~~ 147 (269)
T PRK14259 104 NPFP-KSIYENIAFGARINGYTG-----------------------------------DMDELVERSLRKAAVWDECKDK 147 (269)
T ss_pred ccch-hhHHHHHhhhhhhcCCcH-----------------------------------HHHHHHHHHHHHhCCcchhhhh
Confidence 8787 599999998764332100 0011234556777663 33
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 391 (1106)
.++.+. .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++. .+ .+|++++|+..++.++
T Consensus 148 ~~~~~~-----~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~ 219 (269)
T PRK14259 148 LNESGY-----SLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK--KN-FTIVIVTHNMQQAVRV 219 (269)
T ss_pred hCCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHh
Confidence 454444 499999999999999999999999999999999999999999999874 23 5667788899999999
Q ss_pred cCeEEEecC-----------CeEEEEcCHHHHHH
Q 001291 392 FDDIILLSD-----------GQIVYQGPRELVLE 414 (1106)
Q Consensus 392 ~D~vilL~~-----------G~iv~~G~~~~~~~ 414 (1106)
||++++|++ |++++.|+++++.+
T Consensus 220 ~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 220 SDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred cCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 999999996 67899999988853
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=317.77 Aligned_cols=219 Identities=20% Similarity=0.235 Sum_probs=172.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC--c-eeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~-~~~G~i~i~g 919 (1106)
.+.++|++++++ +.++|+|+||+|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478899987763 24699999999999999999999999999999999996431 1 2579999999
Q ss_pred ccCC-----hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKK-----QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~-----~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+.. ....++.+||++|++.+++ .|+.||+.+....+. .. ...++.+.++++.+++.+........ .+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQ-SGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcC-Ccc
Confidence 7652 1234567999999988776 599999987653221 11 12334566778888774311111111 134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec---
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR--- 1071 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~--- 1071 (1106)
+||+|||||++|||||+.+|+||||||||+|||+.++..+++.|+++.+ ++|||++||+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 6999999999999999999999999999999999999999999999875 589999999997 58889999999972
Q ss_pred -----CCEEEEEecCC
Q 001291 1072 -----GGREVYVGPLG 1082 (1106)
Q Consensus 1072 -----gG~~~~~G~~~ 1082 (1106)
.|++++.|+..
T Consensus 229 ~~~~~~g~i~~~~~~~ 244 (264)
T PRK14243 229 EGGGRYGYLVEFDRTE 244 (264)
T ss_pred cccccCceEEEeCCHH
Confidence 47999998754
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=314.08 Aligned_cols=206 Identities=22% Similarity=0.344 Sum_probs=165.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998753 112389999999887531 1245799999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+ +||+||+.++....+.... .+....++.+++.+++.+ ..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999987543321000 001123455677777642 3344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+
T Consensus 143 ~~~-----~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 143 SAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KD-YTIVIVTHNMQQASRISDK 214 (250)
T ss_pred CCC-----CCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEEeCHHHHHhhCCE
Confidence 444 499999999999999999999999999999999999999999999873 24 4566678888899999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=314.37 Aligned_cols=207 Identities=20% Similarity=0.336 Sum_probs=166.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
.++|+|+|+++++|++++|+|||||||||||++|+|.++| ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3599999999999999999999999999999999999874 111289999999886531 124579999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----ccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 313 (1106)
++ +||+||+.++....+... .......++..++.+|+.. ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS---------------------------------KHKLDRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc---------------------------------HHHHHHHHHHHHHHcCCCchhHHHHh
Confidence 77 899999998754321100 0001123456778888753 234
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
..+ +.||||||||++||+|++.+|++++|||||+|||..++..+.+.|+++.. + ++++.++|+..++.+++|
T Consensus 142 ~~~-----~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 142 KPG-----TRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred CCh-----hhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCC
Confidence 444 45999999999999999999999999999999999999999999998742 3 566777888888999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|+++..|+++++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999998874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=317.67 Aligned_cols=213 Identities=28% Similarity=0.373 Sum_probs=171.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC-----CCceeEEEECCccCCCCCc---cceEEEEcCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----LKVSGRVTYNGHNMDEFVP---ERTAAYISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1106)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 36999999999999999999999999999999999999874 1237999999988754322 346899999977
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
.++.+||+||+.++...... ... .. ..+....++.+++.+||+...++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~~---~~-------------------------~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RAG---AL-------------------------THRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--ccc---cC-------------------------CHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 66779999999885321000 000 00 0011234667899999988777776
Q ss_pred cCccCCCCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
+. |||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|+++.... +++|++++|+..+
T Consensus 144 ~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~~ 217 (272)
T PRK13547 144 TT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPNL 217 (272)
T ss_pred cc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHH
Confidence 55 9999999999999999 5999999999999999999999999999876432 4556667888889
Q ss_pred HHhhcCeEEEecCCeEEEEcCHHHHH
Q 001291 388 TYNLFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 388 ~~~~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+.++||++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 99999999999999999999988763
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=314.50 Aligned_cols=220 Identities=21% Similarity=0.265 Sum_probs=174.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC--C-ceeEEEEEEcC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYITGDIRISG 919 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~--~-~~~~G~i~i~g 919 (1106)
.+.++||++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367788877653 2469999999999999999999999999999999999643 1 12589999999
Q ss_pred ccCCh-----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 920 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 920 ~~~~~-----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.+... ...++.++|++|++.+++ .|+.||+.+...... ....+..++.+.++++.+++.+........ ...
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFP-KSIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLDK-SAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCc-chHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHhC-Ccc
Confidence 87532 234567999999988777 499999987643221 112233456678889999885422111111 234
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
.||+|||||++|||||+.+|+||+|||||+|||+.++..+.++|+++++ |+|||++||+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 6999999999999999999999999999999999999999999999864 899999999997 58888999999975 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (250)
T PRK14266 223 IIESGLTD 230 (250)
T ss_pred EEEeCCHH
Confidence 99998754
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=308.26 Aligned_cols=192 Identities=27% Similarity=0.400 Sum_probs=162.4
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-------ccceEEEEcCCCCCCCCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1106)
|+|+++++ ++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999998 999999998764211 1357999999998888999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
++||+.+...... . ......++.+++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~~------------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRKR------------N------------------------REDRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhCC------------H------------------------HHHHHHHHHHHHHcCCHhHhhcCccc----
Confidence 9999988642110 0 00112356788999998877777655
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
||||||||++||++++.+|++++|||||+|||+.++..+.+.|++++... +++|++++|+..++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999876532 4566778888999999999999999999
Q ss_pred EEEEc
Q 001291 403 IVYQG 407 (1106)
Q Consensus 403 iv~~G 407 (1106)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=314.96 Aligned_cols=217 Identities=21% Similarity=0.218 Sum_probs=173.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCc---eeEEEEEEc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YITGDIRIS 918 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~---~~~G~i~i~ 918 (1106)
..+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3578899987764 246999999999999999999999999999999999975421 258999999
Q ss_pred CccCC-------hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccc
Q 001291 919 GYPKK-------QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSL 987 (1106)
Q Consensus 919 g~~~~-------~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~ 987 (1106)
|.+.. ...+++.++|++|++.+++. |++||+.++...... ......++.+.++++.+++.+ ..+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87542 12345679999999888875 999999876432210 111222345778888887742 22332
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 988 ~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
...||+|||||++|||||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 346999999999999999999999999999999999999999999999865 699999999997 4778999999
Q ss_pred EEecCCEEEEEecCC
Q 001291 1068 LMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1068 ~l~~gG~~~~~G~~~ 1082 (1106)
+|++ |++++.|+..
T Consensus 232 ~l~~-G~i~~~g~~~ 245 (265)
T PRK14252 232 YMYM-GELIEFGATD 245 (265)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9974 7899988764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=309.18 Aligned_cols=210 Identities=19% Similarity=0.291 Sum_probs=154.3
Q ss_pred CceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 841 ~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
|-.+-++||+|.|+ +.++++++++|-|.--..+|||||||.||||||++|.|...+ ..|+.+-+
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 33577888888775 356799999999999999999999999999999999997764 35554321
Q ss_pred cCChhcccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH
Q 001291 921 PKKQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST 998 (1106)
Q Consensus 921 ~~~~~~~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~ 998 (1106)
.+-.+|+..|... +...-|..|.|.-. ++ .+. +.+...|-.+||...++..- +..|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~----FN--lpy----q~ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK----FN--LPY----QEARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh----cC--CCh----HHHHHHhhhhhhhhccceEe----eeecCC
Confidence 1224788877543 23345677766321 11 112 22456788899988777653 357999
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEE
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYV 1078 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~ 1078 (1106)
||+-||++|-.-+..|+||||||||++||.++...+-++|++. ...||++|||-.+ +.+.-..++++.+.|----.
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999887 4579999999764 54554567777765543345
Q ss_pred ecCCCchhHHHH
Q 001291 1079 GPLGHHSCHLIS 1090 (1106)
Q Consensus 1079 G~~~~~~~~~~~ 1090 (1106)
|++.....++++
T Consensus 784 GdFeDYkkEVLd 795 (807)
T KOG0066|consen 784 GDFEDYKKEVLD 795 (807)
T ss_pred ccHHHHHHHHHH
Confidence 655544444433
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=285.92 Aligned_cols=207 Identities=23% Similarity=0.336 Sum_probs=175.0
Q ss_pred CCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC---------------h-hcccc
Q 001291 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK---------------Q-ETFAR 929 (1106)
Q Consensus 866 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~---------------~-~~~~~ 929 (1106)
++...+|++||++.+.|+.+.|+|.|||||||+|+||.=..+ +..|.|.++|..+. + ...+.
T Consensus 16 ~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs 93 (256)
T COG4598 16 YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRT 93 (256)
T ss_pred cccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHH
Confidence 456789999999999999999999999999999999987655 35899999996531 0 12334
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH
Q 001291 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE 1009 (1106)
Q Consensus 930 ~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~a 1009 (1106)
..|+|+|+..++..+||.||+.-.- .+. ...++.+..++++..|..+|+.+..+... ..|||||+||++||||
T Consensus 94 ~L~mVFQ~FNLWsHmtvLeNViEaP-vhV-Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQR~aIARa 166 (256)
T COG4598 94 RLGMVFQHFNLWSHMTVLENVIEAP-VHV-LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQRVAIARA 166 (256)
T ss_pred HhhHhhhhcchhHHHHHHHHHHhcc-hHh-hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHHHHHHHHH
Confidence 5799999999999999999986432 211 23456667778889999999998888663 3699999999999999
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1010 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1010 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|+.+|+++++|||||+|||+---.+.+.+++++++|+|++++||.+.+ ..+...++++|++ |.+-+.|++..
T Consensus 167 LameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~q 238 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPEQ 238 (256)
T ss_pred HhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChHH
Confidence 999999999999999999999999999999999999999999999875 5567889999986 78999998763
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=312.25 Aligned_cols=209 Identities=27% Similarity=0.405 Sum_probs=165.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. .++.+|+|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 567777765531 124599999999999999999999999999999999998653 4799999998653
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccC------CCCCC
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG------LPGVN 994 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~------~~g~~ 994 (1106)
. ...++.++|++|++..++ .|+.||+.+... .. . ...+.++++.+++.+..+..+. .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~-~---~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LA-D---DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CC-C---HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457999999987776 699999876421 11 1 2235678888888766554321 01134
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
+||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ +|||++||+++. . +.||++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~~-~-~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPSL-L-DLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHHH-H-HhCCEEEEEeC-Ce
Confidence 79999999999999999999999999999999999999999999998764 899999999863 4 79999999985 67
Q ss_pred EEEEe
Q 001291 1075 EVYVG 1079 (1106)
Q Consensus 1075 ~~~~G 1079 (1106)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=314.87 Aligned_cols=215 Identities=27% Similarity=0.290 Sum_probs=171.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc--
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP-- 921 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~-- 921 (1106)
+.++|+++.++ +..+|+|+||+|++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccccc
Confidence 67788887653 23589999999999999999999999999999999998663 58999999876
Q ss_pred ---CCh---hc----ccceEEEEccCCC--CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-cccccc
Q 001291 922 ---KKQ---ET----FARISGYCEQNDI--HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLV 988 (1106)
Q Consensus 922 ---~~~---~~----~~~~~g~v~q~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~ 988 (1106)
... .. .++.++|++|++. ..+..|+.||+.+..... .. ......+..+.++++.+++.+ ..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-
Confidence 321 11 1346899999875 334578899986542211 10 111233456789999999963 55554
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEE
Q 001291 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 989 ~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
+..||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.||+++
T Consensus 146 ----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 146 ----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 3469999999999999999999999999999999999999999999998654 899999999987 4777899999
Q ss_pred EEecCCEEEEEecCC
Q 001291 1068 LMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1068 ~l~~gG~~~~~G~~~ 1082 (1106)
+|++ |++++.|+..
T Consensus 221 ~l~~-G~i~~~~~~~ 234 (253)
T TIGR02323 221 VMQQ-GRVVESGLTD 234 (253)
T ss_pred EEEC-CEEEEECCHH
Confidence 9985 7899988753
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=313.95 Aligned_cols=198 Identities=26% Similarity=0.371 Sum_probs=167.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+|+|+||+|++|++++|+|+||||||||+++|+|..+ .+|+|.++|.+... ...++.++|++|++...+.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987532 22345689999998777789999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCeEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~-------~p~illLD 1020 (1106)
||+.+..... ...+...+.++++++.+++.+..+..+ ..||+|||||++|||||+. +|++||||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 122233456789999999987666653 4699999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|||+|||+.++..+++.|+++.++|.|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 218 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRRD 218 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999877999999999987 47789999999985 7899988764
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=304.11 Aligned_cols=179 Identities=26% Similarity=0.331 Sum_probs=149.8
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-----hcccceEEEEccCCC-CC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-----ETFARISGYCEQNDI-HS 941 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~g~v~q~~~-~~ 941 (1106)
++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 34699999999999999999999999999999999998663 58999999987531 123557999999973 23
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
...|++||+.+..... ....+...+.++++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999998864322 1223344456789999999987777654 4699999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
||+|||+.++..+.+.|+++.++|+|||++||+++
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=358.71 Aligned_cols=211 Identities=23% Similarity=0.362 Sum_probs=177.6
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+|++|.|+. ++++|+|+||+|++||++||+|+||||||||+++|+|..++ .+|.|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 36899999998852 23599999999999999999999999999999999998764 47999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~ 991 (1106)
+++ ..+++.++||+|++.+++ -|++||+.++. +. .++.++++++.+++.+..+. .++..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~-~Ti~~NI~~~~------~~----~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLA-DTFLANVTLGR------DI----SEEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCcccc-chHHHHHHhCC------CC----CHHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 753 456788999999999887 49999998762 11 13347888888887754433 33333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.|++.|+++.+ ++|+|++||+++ ....||+|++|+
T Consensus 474 g-~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~- 548 (592)
T PRK10790 474 G-NNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH- 548 (592)
T ss_pred C-CCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE-
Confidence 3 46999999999999999999999999999999999999999999998864 699999999985 467799999997
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
+|+++..|+..
T Consensus 549 ~G~i~~~G~~~ 559 (592)
T PRK10790 549 RGQAVEQGTHQ 559 (592)
T ss_pred CCEEEEEcCHH
Confidence 57999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=313.56 Aligned_cols=204 Identities=20% Similarity=0.276 Sum_probs=164.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-----CCCCceeEEEECCccCCCC-----CccceEEEEcCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-----PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQH 234 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 234 (1106)
..+|+|+|+++++|++++|+|||||||||||++|+|.++ |+ +|+|.++|.++... ..++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 359999999999999999999999999999999999864 45 89999999887532 124579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----c
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----I 310 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~ 310 (1106)
+.+++. ||+||+.++....+... . ......+...++.+++. +
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERR--K-------------------------------SVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCCcchHH
Confidence 887774 99999998643221000 0 00112244567777774 2
Q ss_pred cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 311 ~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
..++.++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. + ++|+.++|+..++.+
T Consensus 157 ~~~~~~~-----~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~ 228 (268)
T PRK14248 157 RLHSSAL-----SLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALR 228 (268)
T ss_pred HHhcCcc-----cCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHH
Confidence 3345544 4999999999999999999999999999999999999999999998743 3 566777888889999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 001291 391 LFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 391 ~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
+||+|++|++|++++.|+.+++.
T Consensus 229 ~~d~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 229 VSDRTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=355.03 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=165.0
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999998 9999999999876544 5789999999877764 9
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-------Cccccccc
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-------LDICADTM 315 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt~ 315 (1106)
++|||.++.. . + .+ .++.+++..| |++..||.
T Consensus 431 i~~NI~~~~~---~-~-d~------------------------------------~i~~a~~~~gl~~~i~~lp~Gldt~ 469 (592)
T PRK10790 431 FLANVTLGRD---I-S-EE------------------------------------QVWQALETVQLAELARSLPDGLYTP 469 (592)
T ss_pred HHHHHHhCCC---C-C-HH------------------------------------HHHHHHHHcCcHHHHHhcccccccc
Confidence 9999998631 1 0 00 1122222222 55667899
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+|+ .+..||||||||++|||||+.+|+|++||||||+||+.+...|.+.|+++. .++|+|++. |.. +....||+|
T Consensus 470 i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivt-Hr~-~~l~~~D~i 544 (592)
T PRK10790 470 LGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIA-HRL-STIVEADTI 544 (592)
T ss_pred ccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEe-cch-HHHHhCCEE
Confidence 987 455699999999999999999999999999999999999999999998763 345666554 443 556779999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|+++..|+++++.+
T Consensus 545 i~l~~G~i~~~G~~~~L~~ 563 (592)
T PRK10790 545 LVLHRGQAVEQGTHQQLLA 563 (592)
T ss_pred EEEECCEEEEEcCHHHHHh
Confidence 9999999999999999864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=358.24 Aligned_cols=214 Identities=23% Similarity=0.322 Sum_probs=177.4
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++||+|.|+. +++++|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999998852 234699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
.++ ..+++.++|++|++.+++ -|++||+.++. +.+. .++.++++++.+++.+.. |..++..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQY----SREQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCC----CHHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 456778999999998876 69999998752 1111 234567788888766533 3344443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||++++..+++.|+++. +++|+|+|||+++ ..+.||+|++|++
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 3 5699999999999999999999999999999999999999999999875 4799999999985 4678999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 554 -g~i~e~g~~~ 563 (582)
T PRK11176 554 -GEIVERGTHA 563 (582)
T ss_pred -CEEEEeCCHH
Confidence 7999998753
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=299.76 Aligned_cols=170 Identities=29% Similarity=0.418 Sum_probs=147.7
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~ 924 (1106)
.++|+++.++ ++++++|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP--DSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 4667766553 24699999999999999999999999999999999998653 58999999987532
Q ss_pred -----hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 925 -----ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 925 -----~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
...++.++|++|++..++..|++||+.+. ||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999998888788999987431 8999
Q ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1000 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1000 qrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
||||++|||||+.+|++++|||||+|||+.++..+++.|++++++ |+|+|++||+++ ++.+.||++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877 899999999987 466789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=315.99 Aligned_cols=195 Identities=27% Similarity=0.334 Sum_probs=155.3
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
.+++|+||++++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 589999999999999999999999999999999998653 58999999976532 234567999999987775 699
Q ss_pred HHHHHHhhhhcCCCCCChHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 947 YESLFYSAWLRLPPEVNSETRK-----MFIEEVMELV--ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~~--~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
+||+.+.... ....... ..+++.++.+ ++....+.. +..||+|||||++|||||+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999775321 1111111 1233444444 444443333 356999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||||+|||+.++..+.+.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999997 35 45999999986 688888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=312.32 Aligned_cols=207 Identities=21% Similarity=0.327 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14251 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTP 96 (251)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCcc
Confidence 359999999999999999999999999999999999986 2111389999999886431 124579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
++ .||+||+.++....+.... +.....++.+++.++|. ...+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14251 97 FP-FSVYDNVAYGLKIAGVKDK---------------------------------ELIDQRVEESLKQAAIWKETKDNLD 142 (251)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchHHHhc
Confidence 75 7999999886543221000 00112345677888884 2334
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
..+ ..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++. .+ ++|+.++|+..++.+++|
T Consensus 143 ~~~-----~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 143 RNA-----QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK--HQ-YTFIMVTHNLQQAGRISD 214 (251)
T ss_pred cCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHH--cC-CeEEEEECCHHHHHhhcC
Confidence 444 4599999999999999999999999999999999999999999999874 23 567778888899999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|+++..|+.+++.
T Consensus 215 ~i~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 215 QTAFLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=345.22 Aligned_cols=104 Identities=25% Similarity=0.328 Sum_probs=89.5
Q ss_pred HHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhc---CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 001291 971 IEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVA---NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046 (1106)
Q Consensus 971 v~~~l~~~~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~---~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~ 1046 (1106)
..++|+.++|... .++. ..+|||||+||+.||++|+. +|++++|||||+|||+.....+++.|+++.++|.
T Consensus 808 ~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~ 882 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGN 882 (924)
T ss_pred HHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 3467888888653 3443 34699999999999999997 5999999999999999999999999999988899
Q ss_pred eEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecC
Q 001291 1047 TVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPL 1081 (1106)
Q Consensus 1047 tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~ 1081 (1106)
|||+++|+++ ....||+++.|. +||++++.|+.
T Consensus 883 TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 883 TVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 9999999986 346799999994 57999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=331.17 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=179.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++||+|+|+.+ ..++|+|+||++++||.+||+|+||||||||+.+|+|-.. +.+|+|.++|.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999998753 3469999999999999999999999999999999999665 3589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-------VGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~~~~g 992 (1106)
.. ..+++.++++.|...++ .-|+++|+.+.. ++ ..++.+++++++++|.++.... ++. |
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF-~~Tlr~NL~lA~-----~~----AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLF-SGTLRDNLRLAN-----PD----ASDEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHH-HHHHHHHHhhcC-----CC----CCHHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 43 33566789999977655 469999997652 12 2345678999999998765544 333 3
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
...||||||||++|||+|++|.++++|||||.|||+.+.+.|++.|.+.++ |+|+|++||++. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 457999999999999999999999999999999999999999999988764 899999999986 3689999999985
Q ss_pred CEEEEEecCCC
Q 001291 1073 GREVYVGPLGH 1083 (1106)
Q Consensus 1073 G~~~~~G~~~~ 1083 (1106)
|++++.|..++
T Consensus 548 Gkiie~G~~~~ 558 (573)
T COG4987 548 GKIIEEGTHAE 558 (573)
T ss_pred CeeeecCCHHh
Confidence 79999998764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=313.16 Aligned_cols=209 Identities=24% Similarity=0.328 Sum_probs=170.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ ++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP--DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCc--
Confidence 367888887763 24699999999999999999999999999999999998653 5799999862
Q ss_pred ChhcccceEEEEccCCCCCCC--CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQNDIHSPF--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
..++|++|++.+.+. .|+.+++.+. ... .++.+.++++.+++.+..+..+ ..||+||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~----~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGT----KKEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc------ccc----cHHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999876655 4777776432 111 1234678999999988776653 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G 1079 (1106)
|||++|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|+ + ++++.|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999997 5778899999995 4 588888
Q ss_pred cCCCc--hhHHHHHH
Q 001291 1080 PLGHH--SCHLISYF 1092 (1106)
Q Consensus 1080 ~~~~~--~~~~~~yf 1092 (1106)
+..+. ...+.++|
T Consensus 203 ~~~~~~~~~~~~~~~ 217 (251)
T PRK09544 203 TPEVVSLHPEFISMF 217 (251)
T ss_pred CHHHHhCCHHHHHHh
Confidence 76532 23456666
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=306.13 Aligned_cols=197 Identities=28% Similarity=0.376 Sum_probs=162.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++..++ +..+|+|+||+|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP--AAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEeCc
Confidence 56777776553 34699999999999999999999999999999999997653 5799999997653
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
....++.++|++|++..++..|+.||+.+....+. . ..+.+.++++.+++.+..+... .+||+|||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---G----EELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22245678999998888888999999977543221 1 1234788999999987665543 4699999999
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998778999999999986 343 3 8888774
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=311.58 Aligned_cols=206 Identities=18% Similarity=0.254 Sum_probs=169.5
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
..+++|+++||+|++|+++||+||||||||||+++|+|..++ ..|+|.++|. +++++|.....+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 456799999999999999999999999999999999998663 4799999884 3566777666677899
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
.||+.+..... ....+.....++++++.+++.+..+..+ .+||+|||||++||+||+.+|+||||||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 1223444455678888889887766553 469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHh
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEV 1094 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~ 1094 (1106)
|+.++..+++.|.++.+.|+|||++||+++ ++.+.||++++|++ |++++.|+..+......+||..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~~~~~~~~~~~~ 240 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELDDVLPKYEAFLND 240 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHHHHHHHhHHHHHH
Confidence 999999999999998777999999999987 47788999999974 7899988866544445555543
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.94 Aligned_cols=217 Identities=23% Similarity=0.295 Sum_probs=173.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC--c--eeEEEEEEc
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G--YITGDIRIS 918 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~--~--~~~G~i~i~ 918 (1106)
.+.+++++++++ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|...+ | .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 377888887653 35699999999999999999999999999999999997542 1 123566666
Q ss_pred CccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 001291 919 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP----LRQSLVGLP 991 (1106)
Q Consensus 919 g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~----~~~~~~~~~ 991 (1106)
|.+... ...++.++|++|++.+++.+|+.||+.+...... ....+..+..+.++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665422 2345679999999988888999999987643211 1122334456789999999864 22332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+..||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 699999999987 46788999999984
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|+++..|+..
T Consensus 228 -g~i~~~g~~~ 237 (257)
T PRK14246 228 -GELVEWGSSN 237 (257)
T ss_pred -CEEEEECCHH
Confidence 7999998765
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=355.47 Aligned_cols=213 Identities=26% Similarity=0.394 Sum_probs=178.1
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++|+||+|.|+. +++++|+|+||+++||+++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 36999999998852 123699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc------ccCCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS------LVGLPG 992 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~------~~~~~g 992 (1106)
.++ ..+++.++||+|++.+++ .|++||+.++.. + ..++.++++++.+++.+..+. .++..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~----~~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAAP-----N----ASDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCCC-----c----cCHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 456778999999998775 699999987531 1 123457889999998876443 33332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
...||||||||++|||||+++|+||+||||||+||+++++.+++.|+++. +++|+|++||+++. ...||++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~--~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG--LEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH--HHhCCEEEEEeC-
Confidence 34699999999999999999999999999999999999999999999885 58999999999973 467999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 549 G~i~~~g~~~ 558 (574)
T PRK11160 549 GQIIEQGTHQ 558 (574)
T ss_pred CeEEEeCCHH
Confidence 7999998754
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.76 Aligned_cols=213 Identities=29% Similarity=0.445 Sum_probs=173.9
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc---ceEEEEcCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIG 239 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~ 239 (1106)
.++++|+|+||.+.+|+-++|+||||||||||.++|.|..+|. +|.|.+||.+++.+++. +.+||.||+-.+|
T Consensus 347 ~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF- 422 (580)
T COG4618 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELF- 422 (580)
T ss_pred CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceec-
Confidence 3468999999999999999999999999999999999999997 99999999999887653 7899999975555
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
..||.|||+= +. ++.|.+...+++...+ +.+ =++.|++.+||.||+
T Consensus 423 ~GTIaeNIaR---f~----------------------~~~d~~kIieAA~lAg------vHe--lIl~lP~GYdT~iG~- 468 (580)
T COG4618 423 DGTIAENIAR---FG----------------------EEADPEKVIEAARLAG------VHE--LILRLPQGYDTRIGE- 468 (580)
T ss_pred CCcHHHHHHh---cc----------------------ccCCHHHHHHHHHHcC------hHH--HHHhCcCCccCccCC-
Confidence 5799999952 21 1223333333332222 111 146799999999996
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
.+.+||||||||+++|||++++|.+++||||-|+||+.....+.+.|.+.. ..++|+|++ +| .+.+...+|+|++|+
T Consensus 469 ~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvvi-aH-RPs~L~~~Dkilvl~ 545 (580)
T COG4618 469 GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVVI-AH-RPSALASVDKILVLQ 545 (580)
T ss_pred CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEEE-ec-CHHHHhhcceeeeec
Confidence 456799999999999999999999999999999999999999999998753 345555554 44 467889999999999
Q ss_pred CCeEEEEcCHHHHHHHH
Q 001291 400 DGQIVYQGPRELVLEFF 416 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~~f 416 (1106)
+|++-.+|+++|++...
T Consensus 546 ~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 546 DGRIAAFGPREEVLAKV 562 (580)
T ss_pred CChHHhcCCHHHHHHHh
Confidence 99999999999998754
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=278.30 Aligned_cols=201 Identities=28% Similarity=0.391 Sum_probs=172.5
Q ss_pred ccccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcC
Q 001291 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQ 233 (1106)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q 233 (1106)
.....+||++|++.|++||-++|+|||||||||||-+|+|+-.|+ +|+|.+.|+++..... .+.+|+|+|
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 346688999999999999999999999999999999999999998 9999999999865532 368999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc
Q 001291 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1106)
...++|+||..||+...+.++|-+.+ | ........|+.+||.+-.+
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~--------------------~--------------~~~~A~~lL~~vGLg~Rl~ 141 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSA--------------------D--------------SRAGAKALLEAVGLGKRLT 141 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccc--------------------c--------------HHHHHHHHHHHhCcccccc
Confidence 99999999999999998877653211 0 1123456789999998888
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
.+.+. |||||+|||+||||+...|+|||-||||-.||..|..+|.++|-.+.+. .+++++.++|+. ....-||
T Consensus 142 HyP~q-----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD~-~LA~Rc~ 214 (228)
T COG4181 142 HYPAQ-----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHDP-QLAARCD 214 (228)
T ss_pred cCccc-----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCCH-HHHHhhh
Confidence 77765 9999999999999999999999999999999999999999999887664 566777777764 5667899
Q ss_pred eEEEecCCeEEE
Q 001291 394 DIILLSDGQIVY 405 (1106)
Q Consensus 394 ~vilL~~G~iv~ 405 (1106)
|++-|.+|+++.
T Consensus 215 R~~r~~~G~l~~ 226 (228)
T COG4181 215 RQLRLRSGRLVE 226 (228)
T ss_pred heeeeecceecc
Confidence 999999999874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=316.15 Aligned_cols=197 Identities=28% Similarity=0.383 Sum_probs=153.6
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~t 945 (1106)
.++|+|+||+|++|++++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP--TSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC--CCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 4699999999999999999999999999999999998653 58999999977532 223456999999987765 69
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc------CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEE
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV------GLPGVNGLSTEQRKRLTIAVELVANPSIIFM 1019 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~------~~~g~~~LS~Gqrqrl~iA~aL~~~p~illL 1019 (1106)
++||+.+....+ ..+ .+.+.++..++.+..+... ....+.+||+|||||++|||||+.+|++|+|
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 163 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLL 163 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999997753211 111 1223333333322211110 0012357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |++++.|+.
T Consensus 164 DEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 164 DEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999987 7999999999987 35 48999999986 689888764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=311.71 Aligned_cols=219 Identities=27% Similarity=0.311 Sum_probs=167.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++ ++.+|+|+||+|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 45777777653 24699999999999999999999999999999999997421135899999998764
Q ss_pred hh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhh-hc-C-CCC-CChHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 001291 924 QE---T-FARISGYCEQNDIHSPFVTVYESLFYSAW-LR-L-PPE-VNSETRKMFIEEVMELVELK-PLRQSLVGLPGVN 994 (1106)
Q Consensus 924 ~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~-~~-~-~~~-~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~ 994 (1106)
.. . .++.++|++|++..++.+|+.+++.+... ++ . ... ........+++++++.+++. ...+..+ ..
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 21 1 22468999999887777776665533211 11 0 000 11122345678889999985 3444332 12
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~gG 1073 (1106)
+||+|||||++|||||+.+|+||+|||||+|||+.++..+.+.|+++++.|+|||++|||++. +... +|++++|+ +|
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~-~g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLY-QG 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEE-CC
Confidence 599999999999999999999999999999999999999999999998778999999999873 5555 89999997 47
Q ss_pred EEEEEecC
Q 001291 1074 REVYVGPL 1081 (1106)
Q Consensus 1074 ~~~~~G~~ 1081 (1106)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89998875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=306.20 Aligned_cols=196 Identities=27% Similarity=0.388 Sum_probs=162.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999987 999999999875432 135799999999888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+|+.||+.++...... .. ..+....++.+++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LS------------------------YQEARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CC------------------------HHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 889999999987543210 00 001123467789999998887777654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++....+ .+++.++|+.. +.+++|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sh~~~-~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQG-CTILIVTHDNR-ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcC-CEEEEEeCCHH-HHhhCCEEEEE
Confidence 999999999999999999999999999999999999999999998764334 44555566665 56899999999
Q ss_pred cCCeE
Q 001291 399 SDGQI 403 (1106)
Q Consensus 399 ~~G~i 403 (1106)
.+|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=313.04 Aligned_cols=206 Identities=22% Similarity=0.283 Sum_probs=165.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|+++++|++++|+|+|||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 59999999999999999999999999999999999987521 1389999999877431 1235799999998878
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----ccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1106)
+ +||+||+.++....+.- ++ .+....++.+++.+|+. +..++
T Consensus 101 ~-~tv~enl~~~~~~~~~~-------------------~~--------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKL-------------------PQ--------------ADLDEIVESALKGAALWQEVKDKLNK 146 (259)
T ss_pred C-ccHHHHHHHHHHHhcCC-------------------CH--------------HHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 7 89999998875432100 00 00112345667777773 34455
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++ .|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.. + .+|+.++|+.+++.+++|+
T Consensus 147 ~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 147 SAL-----GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCe
Confidence 444 4999999999999999999999999999999999999999999998742 3 5667788899999999999
Q ss_pred EEEec-----CCeEEEEcCHHHHH
Q 001291 395 IILLS-----DGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~-----~G~iv~~G~~~~~~ 413 (1106)
+++|+ +|+++++|+++++.
T Consensus 219 i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 219 TAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEEEeccCCCCceEEEeCCHHHHh
Confidence 99997 59999999999874
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=291.28 Aligned_cols=211 Identities=24% Similarity=0.354 Sum_probs=184.7
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIG 239 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1106)
.++.+|+|+|..|++|.+|+++|||||||||||.+++.+++.+ +|+|+++|.++..... .+.++..-|+.....
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d---~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~ 88 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSKELAKKLSILKQENHINS 88 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcccc---CceEEEeeeecccCChHHHHHHHHHHHhhchhhh
Confidence 4567999999999999999999999999999999999999988 9999999999876644 367888999888888
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+|-+.|+.--..-|. + ..+....++..++.|+|++..|....+
T Consensus 89 rlTV~dLv~FGRfPYSqGR------------------l--------------t~eD~~~I~~aieyl~L~~l~dryLd~- 135 (252)
T COG4604 89 RLTVRDLVGFGRFPYSQGR------------------L--------------TKEDRRIINEAIEYLHLEDLSDRYLDE- 135 (252)
T ss_pred eeEHHHHhhcCCCcccCCC------------------C--------------chHHHHHHHHHHHHhcccchHHHhHHh-
Confidence 9999999999853221111 0 112345688899999999999988865
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
||||||||.-||..++.+.+.+|||||.+.||...+.++++.||++++..++|+|+ +.|+...+..++|+|+-|.
T Consensus 136 ----LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~Ktivi-VlHDINfAS~YsD~IVAlK 210 (252)
T COG4604 136 ----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHDINFASCYSDHIVALK 210 (252)
T ss_pred ----cccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEE-EEecccHHHhhhhheeeec
Confidence 99999999999999999999999999999999999999999999999988777666 5688999999999999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++.+|+++++..
T Consensus 211 ~G~vv~~G~~~eii~ 225 (252)
T COG4604 211 NGKVVKQGSPDEIIQ 225 (252)
T ss_pred CCEEEecCCHHHhcC
Confidence 999999999999863
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=313.61 Aligned_cols=212 Identities=20% Similarity=0.305 Sum_probs=166.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCCC-----ccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEFV-----PERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|++|++|++++|+||||||||||+++|+|... |+...+|+|+++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999976 21113899999998764321 24579999999877
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++. ||+||+.++....+.... ..+....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------------------------------KKKLDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------------------------------HHHHHHHHHHHHHHcCCCchhhhHhh
Confidence 875 999999986433211000 00011235667889998652211111
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. . +.+|++++|+..++.+++|+|++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--K-NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--c-CCeEEEEeCCHHHHHhhcCEEEE
Confidence 1234599999999999999999999999999999999999999999999863 3 45666778888899999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=275.15 Aligned_cols=216 Identities=25% Similarity=0.332 Sum_probs=181.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
++..++++++|. ..++|.||+++.+.||.+.|+||||||||||+++|.=... +.+|+..|.|..-
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~--p~sg~l~ia~~~f 66 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHF 66 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC--CCCCeEEeccccc
Confidence 466777877663 4579999999999999999999999999999999976544 3478887776431
Q ss_pred --C-----h--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001291 923 --K-----Q--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGV 993 (1106)
Q Consensus 923 --~-----~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~ 993 (1106)
+ + ...++.+|.|+|+..++|.+||.||+.-.- .+. ...++++.+....++++.+.|.+++|+..
T Consensus 67 d~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p----- 139 (242)
T COG4161 67 DFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP----- 139 (242)
T ss_pred ccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----
Confidence 1 1 245678999999999999999999986432 221 24556777788899999999999998763
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
-.|||||+|||+|||||+.+|++|++||||++|||+-.+.|.++|+++...|.|=+++||..+. ..+.+.+++.|++ |
T Consensus 140 lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~v-a~k~as~vvyme~-g 217 (242)
T COG4161 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV-ARKTASRVVYMEN-G 217 (242)
T ss_pred eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhH-HHhhhhheEeeec-C
Confidence 3699999999999999999999999999999999999999999999999999999999998864 4567899999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+-.
T Consensus 218 ~ive~g~a~ 226 (242)
T COG4161 218 HIVEQGDAS 226 (242)
T ss_pred eeEeecchh
Confidence 999999754
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=329.84 Aligned_cols=226 Identities=18% Similarity=0.258 Sum_probs=179.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++.. ..+.+|+|+||+|++|+++||+||||||||||+++|+|..++ ..|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 46777777665321 124699999999999999999999999999999999998763 589999998641
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.++ +...+.+.+|++||+.+..... ....+...+.+.++++.+++.+..+..+ .+|||||||
T Consensus 89 -------~i~---~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 -------LIA---ISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred -------eEE---eccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 122 2334456689999998754322 1223344456788999999987777654 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+..
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999998877999999999987 57788999999985 7899999876
Q ss_pred CchhHHHHHHHhCCCCcc
Q 001291 1083 HHSCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1083 ~~~~~~~~yf~~~~g~~~ 1100 (1106)
+.....-.|++..+|.++
T Consensus 229 el~~~~~~~~~~~~~~~~ 246 (549)
T PRK13545 229 EVVDHYDEFLKKYNQMSV 246 (549)
T ss_pred HHHhhHHHHHHHHhhcCh
Confidence 544455567776666654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=302.66 Aligned_cols=184 Identities=25% Similarity=0.320 Sum_probs=154.0
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh--hcccceEEEEccCCCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ--ETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~g~v~q~~~~~~~~t 945 (1106)
++.+|+|+||+|++|++++|+||||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 35699999999999999999999999999999999997653 58999999987532 223467899999988888899
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsg 1025 (1106)
+.||+.+....+. .+ +..+.++++.+++.+..+..+ .+||+|||||++|||||+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~-----~~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG-----GA--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC-----Cc--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987543321 11 235688999999987766653 46999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE
Q 001291 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~ 1068 (1106)
||+.++..+++.|++++++|.|||++||++. + -.+++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~--~~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL-G--LVEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-c--ccceEEee
Confidence 9999999999999998778999999999975 2 34677654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=312.98 Aligned_cols=206 Identities=20% Similarity=0.306 Sum_probs=165.6
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
++|+|+|+.|++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.++
T Consensus 39 ~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 5999999999999999999999999999999999998741 01289999999887531 1246799999998888
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+. ||+||+.+.....+... + ......++.+++.+++.. ..+.
T Consensus 119 ~~-tv~enl~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 164 (272)
T PRK14236 119 PK-SIYENVVYGLRLQGINN--R-------------------------------RVLDEAVERSLRGAALWDEVKDRLHE 164 (272)
T ss_pred cc-cHHHHHHHHHHhcCCCc--H-------------------------------HHHHHHHHHHHHHcCCChhHHHHhhC
Confidence 75 99999998754332100 0 001123456677788753 2344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. + .+++.++|+..++.+++|+
T Consensus 165 ~~-----~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tiiivtH~~~~~~~~~d~ 236 (272)
T PRK14236 165 NA-----FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--K-YTIVIVTHNMQQAARVSDY 236 (272)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEeCCHHHHHhhCCE
Confidence 33 45999999999999999999999999999999999999999999998753 3 4566678888999999999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+++++.
T Consensus 237 i~~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 237 TAFMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEEEECCEEEecCCHHHHh
Confidence 9999999999999988763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=310.75 Aligned_cols=207 Identities=22% Similarity=0.292 Sum_probs=165.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC--CCCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP--SLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+.+|+|+|+++++|++++|+||||||||||+++|+|..++ +...+|+|.++|+++... ..++.++|++|++.+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 98 (253)
T PRK14261 19 KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNP 98 (253)
T ss_pred eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCcc
Confidence 3599999999999999999999999999999999998753 111389999999987542 123579999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----ccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~d 313 (1106)
++ .||+||+.|+.+..+... .......++.+++.++|.+ ..+
T Consensus 99 ~~-~tv~eni~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~~~~ 144 (253)
T PRK14261 99 FP-KSIYENVAYGPRIHGEKN---------------------------------KKTLDTIVEKSLKGAALWDEVKDRLH 144 (253)
T ss_pred Cc-ccHHHHHHhhHHhcCCCC---------------------------------HHHHHHHHHHHHHHhcCchhhHHHhh
Confidence 87 499999998754322100 0001123455677777743 234
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
+.+ +.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.. + .+|+.++|+..++.+++|
T Consensus 145 ~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d 216 (253)
T PRK14261 145 DSA-----LSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSD 216 (253)
T ss_pred cCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCC
Confidence 444 45999999999999999999999999999999999999999999998753 3 566677888899999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
++++|++|+++..|+.+++.
T Consensus 217 ~v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 217 YTGFMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEEEEECCEEEEcCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=312.15 Aligned_cols=201 Identities=27% Similarity=0.386 Sum_probs=168.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCCH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1106)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999984 3 8999999998754332 2468999999888888999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.+..... . . ..+....++.+++.+||.+..++.++.
T Consensus 87 ~~nl~~~~~~~-~-~---------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-R---------------------------------TEAVASALNEVAEALGLDDKLGRSVNQ----- 126 (248)
T ss_pred HHHHHhcCccC-C-C---------------------------------cHHHHHHHHHHHHHcCCHhHhcCCccc-----
Confidence 99998753110 0 0 000123456789999998877877765
Q ss_pred CChhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 324 VSGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~-------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999998753 3 4567778888899999999999
Q ss_pred EecCCeEEEEcCHHHHH
Q 001291 397 LLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987763
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=311.98 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=166.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCC--CceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL--KVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 369999999999999999999999999999999999987631 1379999999887531 123579999999989
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
++.+|+.||+.++....+.... ++....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR---------------------------------DHLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCcchhhhhhhc
Confidence 9999999999876542211000 00111233445555542 3445
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
+.+++ ||||||||++||++|+.+|++|+|||||+|||..++..+.+.|+++. .+ +++++++|+..++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK--KV-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCC
Confidence 55544 99999999999999999999999999999999999999999999874 23 566778888899999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=313.18 Aligned_cols=211 Identities=24% Similarity=0.373 Sum_probs=163.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. .+.+++|+||+|++|++++|+||||||||||+++|+|..++ ..|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 3677888876531 23589999999999999999999999999999999998653 479999999765
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-C-----CCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-G-----LPGV 993 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-~-----~~g~ 993 (1106)
.. ..+++.++|++|++.+++. |+.||+.+... ... ...+.++++.+++.+..+... + ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 32 2345679999999877664 99999976521 111 122344455555443332211 0 0113
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+||+|||||++|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.||++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 5799999999999999999999999999999999999999999999985 5899999999987 34 56999999985 7
Q ss_pred EEEEEecC
Q 001291 1074 REVYVGPL 1081 (1106)
Q Consensus 1074 ~~~~~G~~ 1081 (1106)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=294.39 Aligned_cols=209 Identities=23% Similarity=0.354 Sum_probs=186.5
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..+++++|+||.++||+|++++|||||||||.+++|.|++.|+ +|+|+++|.+++... ...|||.|.+.-+++.+|
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~t 88 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMT 88 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCccCc
Confidence 4568999999999999999999999999999999999999998 999999999987543 347999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|.|.|.|-++++|+.. ++.....++.|+.+++.......|-+
T Consensus 89 v~dql~yla~LkGm~~----------------------------------~e~~~~~~~wLer~~i~~~~~~kIk~---- 130 (300)
T COG4152 89 VEDQLKYLAELKGMPK----------------------------------AEIQKKLQAWLERLEIVGKKTKKIKE---- 130 (300)
T ss_pred HHHHHHHHHHhcCCcH----------------------------------HHHHHHHHHHHHhccccccccchHHH----
Confidence 9999999999998632 12334577889999999888777755
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
||-|.+|++-+-.+++.+|++++||||+|||||.++..+-+.+.++.. .+++|+..+|.+..+.++||++++|++|+
T Consensus 131 -LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~kG~ 207 (300)
T COG4152 131 -LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLKKGQ 207 (300)
T ss_pred -hhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheecCCc
Confidence 999999999999999999999999999999999999999999988753 46667777899999999999999999999
Q ss_pred EEEEcCHHHHHHHH
Q 001291 403 IVYQGPRELVLEFF 416 (1106)
Q Consensus 403 iv~~G~~~~~~~~f 416 (1106)
.|.+|+.+++..-|
T Consensus 208 ~V~~G~v~~ir~~~ 221 (300)
T COG4152 208 TVLYGTVEDIRRSF 221 (300)
T ss_pred eEEeccHHHHHHhc
Confidence 99999999998744
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=309.12 Aligned_cols=207 Identities=20% Similarity=0.297 Sum_probs=163.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEECCccCCCC-----CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|..+ |+...+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 359999999999999999999999999999999999865 3211389999999877421 124579999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----cccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----ICAD 313 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1106)
++ .||+||+.+.....+.... +.....+...++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK---------------------------------AVLDEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCccchhhHHh
Confidence 87 7999999987543221000 00011234456666653 2334
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
..++ .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.. + .++++++|+..++.+++|
T Consensus 144 ~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d 215 (252)
T PRK14255 144 ESAL-----SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISD 215 (252)
T ss_pred cCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCC
Confidence 4444 4999999999999999999999999999999999999999999998743 3 566668888899999999
Q ss_pred eEEEecCCeEEEEcCHHHHH
Q 001291 394 DIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1106)
+|++|++|+++..|+..++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=344.90 Aligned_cols=215 Identities=22% Similarity=0.251 Sum_probs=172.9
Q ss_pred eecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcC-----
Q 001291 845 TFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG----- 919 (1106)
Q Consensus 845 ~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g----- 919 (1106)
.++|+++.++ ++.+|+|+||+|++|+++||+||||||||||+++|+|.....+.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~ 68 (520)
T TIGR03269 2 EVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEK 68 (520)
T ss_pred EEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccc
Confidence 4567776652 3469999999999999999999999999999999999741013579998872
Q ss_pred ------------------ccC----------Ch---hcccceEEEEccC-CCCCCCCCHHHHHHHhhhhcCCCCCChHHH
Q 001291 920 ------------------YPK----------KQ---ETFARISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETR 967 (1106)
Q Consensus 920 ------------------~~~----------~~---~~~~~~~g~v~q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 967 (1106)
.+. .. ...++.+||++|+ +.+++.+|++||+.|..... ....++.
T Consensus 69 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~ 145 (520)
T TIGR03269 69 CGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKEA 145 (520)
T ss_pred ccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence 111 00 1134568999997 56777889999998864332 1223344
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCc
Q 001291 968 KMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1046 (1106)
Q Consensus 968 ~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~ 1046 (1106)
++.+.++++.+++.+..++.+ .+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ .|+
T Consensus 146 ~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 146 VGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 567889999999987776653 46999999999999999999999999999999999999999999999865 489
Q ss_pred eEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1047 tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|||+||||++ .+.+.||++++|++ |++++.|+..
T Consensus 221 tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 254 (520)
T TIGR03269 221 SMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTPD 254 (520)
T ss_pred EEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCHH
Confidence 9999999997 46778999999985 6888887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=354.28 Aligned_cols=209 Identities=22% Similarity=0.385 Sum_probs=164.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999998 9999999999876543 468999999987665 7
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|++|||.++.... .+.+...++.... -.+..++ .|++..||.+|+. +
T Consensus 432 Ti~~Ni~~~~~~~------------------------~~~~~i~~al~~~------~l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTEQ------------------------YSREQIEEAARMA------YAMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCCC------------------------CCHHHHHHHHHHh------CcHHHHH--hcccccCceeCCC-C
Confidence 9999998853100 0000001000000 0011111 3566789999964 5
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+.||||||||++||||++++|+|++||||||+||+.++..+.+.|+++. .++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 6699999999999999999999999999999999999999999998753 3455555 45554 567889999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++..|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=310.77 Aligned_cols=208 Identities=23% Similarity=0.298 Sum_probs=168.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC--CCceeEEEECCccCCCC-----CccceEEEEcCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS--LKVSGRVTYNGHNMDEF-----VPERTAAYISQHDNHI 238 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1106)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +..+|+|.++|+++... ..++.++|++|+..++
T Consensus 21 ~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~ 100 (261)
T PRK14258 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLF 100 (261)
T ss_pred eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCccC
Confidence 5999999999999999999999999999999999999874 12479999999886421 1245699999998777
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc----cccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI----CADT 314 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 314 (1106)
+ +||+||+.+.....+... . .+....+..+++.+||.. ..++
T Consensus 101 ~-~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (261)
T PRK14258 101 P-MSVYDNVAYGVKIVGWRP---------K------------------------LEIDDIVESALKDADLWDEIKHKIHK 146 (261)
T ss_pred c-ccHHHHHHHHHHhcCCCc---------H------------------------HHHHHHHHHHHHHcCCcchhhhHhcC
Confidence 7 899999988653221100 0 001123566788888754 2344
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+ ..||||||||++||++|+.+|++++|||||+|||..+...+.+.|++++... +++|+.++|+..++.++||+
T Consensus 147 ~~-----~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~-~~tiiivsH~~~~i~~~~d~ 220 (261)
T PRK14258 147 SA-----LDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRS-ELTMVIVSHNLHQVSRLSDF 220 (261)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhcCE
Confidence 44 3499999999999999999999999999999999999999999999875433 45666678889999999999
Q ss_pred EEEecC-----CeEEEEcCHHHHH
Q 001291 395 IILLSD-----GQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~-----G~iv~~G~~~~~~ 413 (1106)
|++|++ |+++++|+++++.
T Consensus 221 i~~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 221 TAFFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEEEccCCCcCceEEEeCCHHHHH
Confidence 999999 9999999999874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=345.87 Aligned_cols=213 Identities=26% Similarity=0.367 Sum_probs=176.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++||+|+++. .++++|+|+|++|++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 330 ~i~~~~v~f~y~~-----------~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~--~~G~I~i~g~~i 396 (571)
T TIGR02203 330 DVEFRNVTFRYPG-----------RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP--DSGQILLDGHDL 396 (571)
T ss_pred eEEEEEEEEEcCC-----------CCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCeEEECCEeH
Confidence 6999999998852 124699999999999999999999999999999999998764 479999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g 992 (1106)
++ ..+++.++||+|++.++. .|++||+.++. +.+. .++.++++++.+++.+..++ .++..|
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~----~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g 467 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQA----DRAEIERALAAAYAQDFVDKLPLGLDTPIGENG 467 (571)
T ss_pred HhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCC----CHHHHHHHHHHcChHHHHHhCcCcccceecCCC
Confidence 43 345678999999998764 69999997652 1112 23457788888888654433 344333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
..||||||||++||||++++|+||+||||||+||+.+++.+++.|+++. +++|+|++||+++ ....||++++|++
T Consensus 468 -~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~- 542 (571)
T TIGR02203 468 -VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDD- 542 (571)
T ss_pred -CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999875 4799999999985 5688999999975
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|+++..|+..
T Consensus 543 g~i~~~g~~~ 552 (571)
T TIGR02203 543 GRIVERGTHN 552 (571)
T ss_pred CEEEeeCCHH
Confidence 7899888743
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=298.11 Aligned_cols=170 Identities=40% Similarity=0.650 Sum_probs=147.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 887 9999999998764333567999999988889999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
++||+.+..++ +
T Consensus 99 ~~~~i~~~~~~-----------------------------------------------------------~--------- 110 (194)
T cd03213 99 VRETLMFAAKL-----------------------------------------------------------R--------- 110 (194)
T ss_pred HHHHHHHHHHh-----------------------------------------------------------c---------
Confidence 99999864210 0
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh-hHHHhhcCeEEEecCC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPA-PETYNLFDDIILLSDG 401 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~vilL~~G 401 (1106)
.||||||||++||+||+.+|++++|||||+|||..++..+.+.|+++.. .+.|+|+ ++|+. .++.+++|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 3999999999999999999999999999999999999999999998754 3445444 55555 4788999999999999
Q ss_pred eEEEEc
Q 001291 402 QIVYQG 407 (1106)
Q Consensus 402 ~iv~~G 407 (1106)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=306.37 Aligned_cols=210 Identities=24% Similarity=0.283 Sum_probs=165.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEc--Cc-
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS--GY- 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~--g~- 920 (1106)
+.++|+++.++.... ...+..+|+|+||+|++||+++|+|+||||||||+++|+|..++ ..|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 467788777642100 00124699999999999999999999999999999999998653 47999998 42
Q ss_pred -cCCh---hc----ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-cccccCCC
Q 001291 921 -PKKQ---ET----FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSLVGLP 991 (1106)
Q Consensus 921 -~~~~---~~----~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~~ 991 (1106)
+... .. .++.+||++|++.+++.+|+.|++.+..... ........+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1346899999998888899999998754322 12223344567889999999753 3433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+.+||+|||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ .+...||+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 3469999999999999999999999999999999999999999999999877999999999976 3567899998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=361.93 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=163.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|++|+||+.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+| +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 46999999999999999999999999999999999999998 9999999999876543 57899999988766 57
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|++|||.++.. +.+.+...++....+ .+..+ -.|+...||.+|+ .+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i--~~lp~gl~t~i~e-~G 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVI--TSRPGGYDAELAE-GG 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHH--HhCcCcccceecc-CC
Confidence 99999987521 001011111110000 01111 1356677899986 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
.+||||||||++||||++++|++|+||||||+||+.+...|.+.|++ .++|+|+ ++|..+ ....||+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl~-~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRLS-TIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCHH-HHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999875 3455555 555554 55679999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++.+|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=358.93 Aligned_cols=206 Identities=27% Similarity=0.417 Sum_probs=160.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|++++|||.++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+| +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 46999999999999999999999999999999999999998 9999999999876543 47899999988666 57
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|++|||.++.... + .+ + ..++....+ .+..++ .|++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~~---~-~e---~------------------i~~al~~a~------l~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTDT---P-DE---E------------------IMAAAKAAN------AHDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCCC---C-HH---H------------------HHHHHHHcC------CHHHHH--hCCCccCCcccC-CC
Confidence 9999999863210 0 00 0 000000000 011111 355667999986 35
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++||||++++|+|++||||||+||+.+...+.+ .. ...++| ++.++|..+ ..+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~---~~~~~T-vIiItHrl~-~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR---SRASRT-VLLIAHRLS-TVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh---ccCCCe-EEEEeccHH-HHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999998887 22 123444 445566554 56789999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++.+|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=319.76 Aligned_cols=204 Identities=20% Similarity=0.346 Sum_probs=165.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC--C---CCCceeEEEECCccCCCC-----CccceEEEEcCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD--P---SLKVSGRVTYNGHNMDEF-----VPERTAAYISQH 234 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~---~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~ 234 (1106)
..+|+|+|++|++|++++|+|||||||||||++|+|..+ | + +|+|.++|.++... ..++.++|++|+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHT---TGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCC---ceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 359999999999999999999999999999999999854 3 5 99999999876432 124579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc----c
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD----I 310 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~ 310 (1106)
+.+++. ||+||+.|+....+... .......+..+++.+|+. +
T Consensus 129 ~~l~~~-tv~enl~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~~l~~~l~~ 174 (286)
T PRK14275 129 PNPFPK-SIFDNIAYGPRLHGIND---------------------------------KKQLEEIVEKSLRKAALWDEVSD 174 (286)
T ss_pred CCCCcc-CHHHHHHhHHHhcCCCc---------------------------------HHHHHHHHHHHHHHhCCccchhh
Confidence 887774 99999998754322100 000112345567777763 3
Q ss_pred cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 311 CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 311 ~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
..++.++ .|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.. + .+|++++|+..++.+
T Consensus 175 ~~~~~~~-----~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~-~tvIivsH~~~~~~~ 246 (286)
T PRK14275 175 RLDKNAL-----GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--S-YTIMIVTHNMQQASR 246 (286)
T ss_pred HhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHH
Confidence 3455444 4999999999999999999999999999999999999999999998742 3 567778899999999
Q ss_pred hcCeEEEecCCeEEEEcCHHHHH
Q 001291 391 LFDDIILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 391 ~~D~vilL~~G~iv~~G~~~~~~ 413 (1106)
++|++++|++|++++.|+++++.
T Consensus 247 ~~d~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 247 VSDYTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred hCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999988774
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=350.18 Aligned_cols=201 Identities=28% Similarity=0.443 Sum_probs=165.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 36999999999999999999999999999999999999998 9999999999877544 467999999986665 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC------ccccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL------DICADTM 315 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~ 315 (1106)
|++||+.++..- .+ +..+..+++..|+ ++..||.
T Consensus 429 ti~~Ni~~~~~~-------------------------~~---------------~~~i~~al~~~~l~~~i~~p~GldT~ 468 (574)
T PRK11160 429 TLRDNLLLAAPN-------------------------AS---------------DEALIEVLQQVGLEKLLEDDKGLNAW 468 (574)
T ss_pred cHHHHhhcCCCc-------------------------cC---------------HHHHHHHHHHcCCHHHHcCccccCch
Confidence 999999886320 00 0112233444444 4567899
Q ss_pred ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 316 VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 316 vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+|+. ++.||||||||++||||++.+|++|+|||||++||+.++..|.+.|++.. .++|+|++ +|..+. ...||+|
T Consensus 469 vge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviii-tHr~~~-~~~~d~i 543 (574)
T PRK11160 469 LGEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMI-THRLTG-LEQFDRI 543 (574)
T ss_pred hcCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEE-ecChhH-HHhCCEE
Confidence 9963 56699999999999999999999999999999999999999999998763 35565554 454444 4669999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|+++..|+++++.+
T Consensus 544 ~~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 544 CVMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEEeCCeEEEeCCHHHHHh
Confidence 9999999999999998864
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1106 | ||||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-10 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 6e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-10 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 7e-10 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 7e-10 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-09 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-09 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-08 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-08 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-08 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 5e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 7e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 4e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 6e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 8e-07 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 9e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 9e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 7e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 8e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 1e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 1e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 4e-05 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 5e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 7e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-05 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-04 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 1e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 6e-04 |
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1106 | |||
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-13 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-15 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-23 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-14 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-20 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-08 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-08 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-12 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-08 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-19 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 8e-16 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-19 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 5e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-18 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-04 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-18 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-12 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-08 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 5e-18 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-14 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 3e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-06 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-14 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 3e-06 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-13 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-04 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-05 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-06 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-10 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 6e-06 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-09 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 7e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-06 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 5e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 6e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-07 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-08 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 8e-07 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 8e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-08 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-07 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 4e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-04 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-07 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-04 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 3e-07 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 7e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 7e-07 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 7e-05 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-06 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-05 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 5e-06 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-04 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 1e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 6e-05 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 8e-05 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-04 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-04 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 3e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 6e-04 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-04 |
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 44/186 (23%), Positives = 75/186 (40%), Gaps = 16/186 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGY-PKKQETFA 928
L G+S G + L+G +GAGKTT + +++ + + G + + G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 929 RIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
R Y + + E L + A E +E E+ L +
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1048 VVCTIH 1053
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 59/265 (22%), Positives = 90/265 (33%), Gaps = 67/265 (25%)
Query: 161 TKK--HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
K+ ILK +S ++ G + L+GP +GKTT L ++ + PS SG VT G N
Sbjct: 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKN 78
Query: 219 MDE----------FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ E ++PE AY M E L F A
Sbjct: 79 VVEEPHEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYAS------------ 118
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
E + + ++ GL V S G
Sbjct: 119 ----------------------SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 151
Query: 329 KKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387
+++ ++ P L +DE ++GLD ++ KQ G ++ E
Sbjct: 152 VRKLLIARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLE 208
Query: 388 TYNLFDDIILLSDGQIVYQG-PREL 411
L D I L+ +G IV G EL
Sbjct: 209 VEFLCDRIALIHNGTIVETGTVEEL 233
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 8e-24
Identities = 51/238 (21%), Positives = 88/238 (36%), Gaps = 34/238 (14%)
Query: 855 MPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT- 912
M M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG G I
Sbjct: 1 MSIVMQLQDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 913 GDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIE 972
+ + + A Y Q V+ L + +TR +
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLN 108
Query: 973 EVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 1025
+V + L N LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
LD + + + + G +V + H D+ +L+K GG+ + G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 53/269 (19%), Positives = 87/269 (32%), Gaps = 82/269 (30%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV--------TT 334
+ L LD +++ SGG+ +RV T
Sbjct: 106 LLNDV---------------AGALALDDKLGRST-NQL----SGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSS---TTFQIVNCFKQNIHINSGTAVISLL-------QP 384
+ L L +DE LD + +I++ Q G A++ +
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ-----QGLAIVMSSHDLNHTLRH 199
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVL 413
A LL G+++ G RE VL
Sbjct: 200 A-------HRAWLLKGGKMLASGRREEVL 221
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 2e-23
Identities = 48/212 (22%), Positives = 83/212 (39%), Gaps = 34/212 (16%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
L ++ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 928 ARISGYCEQNDIHSPF-VTVYESLF-----YSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ G+ Q SPF +V + + + P + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKP----KSHDYQVAMQALDYLNLT 119
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1040
L + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
TVV T HQP+ + ++ L+ +
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ 205
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+ + ++ + G + +LG GK+TLL L G P G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
++ ++ Q + +V + + G R + ++ + D V M
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM-----G---RSTHINTFAKPKSH-------DYQVAM 110
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA- 344
+A L L L A +SGGQ++ + ++ A+A
Sbjct: 111 QA---------------LDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL--LQPAPETYNLFDDIILL 398
+ +DE ++ LD + +++ + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-23
Identities = 39/205 (19%), Positives = 82/205 (40%), Gaps = 27/205 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT---GDIRISGYPKKQETFA 928
L ++ G + G +G GKTTL+ ++ Y+ G+I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
+I + + I ++V + L A L + K I + +E VE+ L++
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1047
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1048 VVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 6e-14
Identities = 38/252 (15%), Positives = 79/252 (31%), Gaps = 72/252 (28%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE---- 221
+L+ ++ ++ G + GP GKTTLL ++ L P G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGE 336
L+ + + ++++ + S G +RV
Sbjct: 119 -----------------------LESVEV---------LDLKKKLGELSQGTIRRVQLAS 146
Query: 337 MMVG-PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
++ + +D+ +D + +++ I G +IS + E + D
Sbjct: 147 TLLVNAEI-YVLDDPVVAIDEDSKHKVLKSIL-EILKEKGIVIIS----SREELSYCDVN 200
Query: 396 ILLSDGQIVYQG 407
L
Sbjct: 201 ENLHKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 1e-20
Identities = 46/224 (20%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 835 MVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDKLV------LLNGVSGAFRPGVLTALM 888
L F +L F + D+ + L +LN G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 889 GVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946
G +G GKTTL+ +LAG + G + +S P+K TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTI 1006
+ LF+ ++ + + F +V++ + + + V LS + +R+ I
Sbjct: 431 RQ-LFFK---KIRGQFLNP---QFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1007 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1049
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 5e-14
Identities = 34/184 (18%), Positives = 68/184 (36%), Gaps = 23/184 (12%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIR------------ISGYPKKQE 925
RPG + L+G +G GK+T + +LAG + G + Y K
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 926 TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
+ Q + P L+L E ++ +++++L+ + +
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1045
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1046 RTVV 1049
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-08
Identities = 38/264 (14%), Positives = 75/264 (28%), Gaps = 77/264 (29%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYN--------- 215
+ +PG++ L+G GK+T L LAGK P+L + +
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGS 150
Query: 216 ---GHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+ + A Q+ ++I ++ + + + ++ R K
Sbjct: 151 ELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL-RMEKSPEDVKRYIKI 208
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
++ + ++ L SGG+ +R
Sbjct: 209 LQLEN--------------------VLKRDIEKL------------------SGGELQRF 230
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SL 381
+G + DE S+ LD + + VI S+
Sbjct: 231 -----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS-LL-APTKYVICVEHDLSV 283
Query: 382 LQPAPETYNLFDDIILLSDGQIVY 405
L L D + ++ VY
Sbjct: 284 LD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 59/233 (25%)
Query: 149 EDLLNYLHILPSTKKHL--TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL 206
D + PS KK +L G + +++G +GKTTL+ LAG L P
Sbjct: 347 NDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD- 405
Query: 207 KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTEL 266
G+ +P+ + Q TVR+ R +
Sbjct: 406 --EGQD----------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIR-----------GQF 442
Query: 267 SRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326
+ + +K L +D D V +SG
Sbjct: 443 LNPQFQTDV---------------------------VKPLRIDDIIDQEVQH-----LSG 470
Query: 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI 379
G+ +RV + PA +DE S LDS ++ +++
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR-FILHNKKTAF 522
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 6e-20
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 32/230 (13%)
Query: 826 EASHPKKRGMVLPFEPYSLTFDEVVYSVDMPQQMKLQGVPEDK---LVLLNGVSGAFRPG 882
E + + F PY + F ++ VD+ ++ ++ K L G R G
Sbjct: 323 EFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKG 382
Query: 883 VLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940
+ ++G +G GKTT + +LAG T G + D+ ++ K Q I
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------A 428
Query: 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000
TVYE L +L + E+++ + + L V LS +
Sbjct: 429 EYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGE 476
Query: 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1049
+R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 39/194 (20%), Positives = 76/194 (39%), Gaps = 30/194 (15%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKK-- 923
+ + G++ ++G +G GKTT + +LAG+ + D I +
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
Q F R+ + + +V ++ + K + E+++ V+
Sbjct: 165 QNYFERLKNGEIRPVVKPQYV----------------DLLPKAVKGKVRELLKKVDEVGK 208
Query: 984 RQSLVGLPG--------VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+ +V ++ LS + +R+ IA L+ F DEP+S LD R V
Sbjct: 209 FEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVA 268
Query: 1036 RTVRNTVDTGRTVV 1049
R +R + G+ V+
Sbjct: 269 RVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 3e-10
Identities = 60/298 (20%), Positives = 102/298 (34%), Gaps = 85/298 (28%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
L+ G ++ G + ++GP GKTT + LAG +P+ G+V ++
Sbjct: 366 DYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL----- 417
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDI 281
T AY Q+ E TV E L+ ++L+ +
Sbjct: 418 -----TVAYKPQYIKAEYEGTVYELLSKIDS-----------SKLNSNFYKTEL------ 455
Query: 282 DVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP 341
LK LG+ D V D +SGG+ +RV ++
Sbjct: 456 ---------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATLLRD 489
Query: 342 ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDII 396
A +DE S LD + + + N TA V+ ++ + D +I
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI------DYVSDRLI 543
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQYWAHKDRP 452
+ +G+ G L R+G+ FL +T ++D + RP
Sbjct: 544 VF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG-----RP 585
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-08
Identities = 38/213 (17%), Positives = 66/213 (30%), Gaps = 66/213 (30%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL---KVSGRVTYNGHNMDEF 222
+ IVK G + ++GP +GKTT + LAG+L P+L S +E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNEL 164
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAG 274
Q+ + + + G E+L ++ K
Sbjct: 165 QNYFERLKNGEIRPVVKPQYVDLLPKAV-------------KGKVRELLKKVDEVGKFEE 211
Query: 275 IKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTT 334
+ + +++ + L L SGG+ +RV
Sbjct: 212 VVKELELENVLDR--------------ELHQL------------------SGGELQRV-- 237
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
+ AL F DE S+ LD ++
Sbjct: 238 ---AIAAALLRKAHFYFFDEPSSYLDIRQRLKV 267
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 48/227 (21%), Positives = 97/227 (42%), Gaps = 31/227 (13%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYITGDIRISGYPKKQETF 927
+L +S G L G++GAGKTTL+++L T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 928 ------ARISGYCEQNDIH---SPFVTVYE---SLFYSAWLRLPPEVNSETRKMFIEEVM 975
I G+ + V + S + + + + +++ E R +++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKS-IGVYQDIDDEIRNE-AHQLL 146
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+LV + Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 147 KLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201
Query: 1036 RTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + ++ H +I F ++ L+K G+ + G
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 58/264 (21%), Positives = 92/264 (34%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
TILK +S + G +L G +GKTTLL L + SG V G +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPD 278
++S + V + + +S K+ G+ D
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVV------------------ISGAFKSIGVYQD 133
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338
+E LK++G+ A +G +S G+K+RV M
Sbjct: 134 I------------DDEIRNEAHQLLKLVGMSAKAQQYIGY-----LSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 NLFDDIILLSDGQIVYQGPRELVL 413
F I+LL DGQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 3e-19
Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 35/208 (16%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GDIRISGYPKKQETFARISGYCEQND 938
G ++G +G+GKTTL+ ++G G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 939 IHSPF-VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVNG 995
VTV + + L E+ R + E+++ ++L LR+ +
Sbjct: 82 EAYEIGVTVNDIV------YLYEELKGLDRDL-FLEMLKALKLGEEILRRK------LYK 128
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055
LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 129 LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH-- 183
Query: 1056 SIDIFEAF---DELFLMKRGGREVYVGP 1080
++ + G R
Sbjct: 184 --ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 48/282 (17%), Positives = 81/282 (28%), Gaps = 71/282 (25%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
L++++ V G ++LGP SGKTTLL A++G L P SG + NG
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 219 MDEFVPERTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
+ + Y + + + +TV + + +G+ R+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDLF----- 108
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
E LK L L + +S GQ V
Sbjct: 109 ---------------LEM-------LKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
ALA + +DE +D++ I G I +
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVI-----SRYIKEYGKEGILVTHELDMLNLYK 192
Query: 393 DDIILLSDGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 193 EYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 7e-19
Identities = 46/181 (25%), Positives = 77/181 (42%), Gaps = 29/181 (16%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L G + G + ++G +G GKTT + +LAG T G I D+ ++ K Q
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----Y 355
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
I TVYE L ++NS E+++ + + L V
Sbjct: 356 IK--------ADYEGTVYELLSKI----DASKLNSNFY---KTELLKPLGIIDLYDREV- 399
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1048
N LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1049 V 1049
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-12
Identities = 38/188 (20%), Positives = 76/188 (40%), Gaps = 38/188 (20%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYITGDIRISGYPKK--QETFARISGY 933
+ G++ ++G +G GK+T + +LAG+ G + D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 934 CEQNDIH----SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+I +V ++ + K + E+++ + + +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 990 LPGVNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1042 VDTGRTVV 1049
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 64/342 (18%), Positives = 112/342 (32%), Gaps = 97/342 (28%)
Query: 114 LPTVEVRFEHLTIEAEAFLASKALPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSG 173
L VRF I+ + E L+ Y ++ L+ G
Sbjct: 259 LKDENVRFRPYEIKFTKTGERVEI---------ERETLVTYPRLVKDYGSF--RLEVEPG 307
Query: 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQ 233
+K G + ++GP GKTT + LAG +P+ G++ ++ T AY Q
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDL----------TVAYKPQ 354
Query: 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGE 293
+ E TV E L+ ++L+ +
Sbjct: 355 YIKADYEGTVYELLSKIDA-----------SKLNSNFYKTEL------------------ 385
Query: 294 EANVITDYYLKVLGLDICADTMVGDEMRRGV---SGGQKKRVTTGEMMVGPALALFMDEI 350
LK LG+ D R V SGG+ +RV ++ A +DE
Sbjct: 386 ---------LKPLGII--------DLYDREVNELSGGELQRVAIAATLLRDADIYLLDEP 428
Query: 351 STGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDIILLSDGQIVY 405
S LD + + + N TA V+ ++ + D +++ +G+
Sbjct: 429 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EGEPGK 481
Query: 406 QGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQY 445
G + R+G+ FL +T ++D +
Sbjct: 482 YGRALPPM----------GMREGMNRFLASIGITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-06
Identities = 38/216 (17%), Positives = 65/216 (30%), Gaps = 72/216 (33%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL---KVSGRVTYNGHNMDEF 222
+ +VK G + ++GP +GK+T + LAG+L P+L S +E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMT---VRETLAFAARCQGVGTRYEMLTELSRREK 271
Q+ + I + V E L + + +L K
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------KKADETGKLEEVVK 144
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
A ++ + + ++ L SGG+ +R
Sbjct: 145 ALELEN--------------------VLEREIQHL------------------SGGELQR 166
Query: 332 VTTGEMMVGPALA-----LFMDEISTGLDSSTTFQI 362
V + AL F DE S+ LD
Sbjct: 167 V-----AIAAALLRNATFYFFDEPSSYLDIRQRLNA 197
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 91.5 bits (226), Expect = 1e-18
Identities = 96/594 (16%), Positives = 182/594 (30%), Gaps = 178/594 (29%)
Query: 67 EAFEVDVSNLGLQERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTVEV------- 119
+AF V N ++ Q + +++ E+D+ ++ K+ + + T+
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 120 RF--EHLTIEAEAFLAS--KALPSFTKFFTTIFEDLLNYLH--ILPSTKKHLTILKDVSG 173
+F E L I + FL S K T ++ + + L+ K +++ L+
Sbjct: 81 KFVEEVLRINYK-FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 174 I------VKPGRLTLLLGPPSSGKTTL--------------------------------- 194
+ ++P + L+ G SGKT +
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 195 --LLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH---------DNHIGEMTV 243
L L ++DP+ + N + + N V
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------V 253
Query: 244 R--ETL-AFAARCQG-VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
+ + AF C+ + TR++ +T+ I D T E +++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL-----TPDEVKSLL- 307
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGP-ALALFMDEISTGLDSST 358
LK L ++ R V P L++ + I GL +
Sbjct: 308 ---LKYLDCRP-------QDLPREVLTT------------NPRRLSIIAESIRDGLATWD 345
Query: 359 TFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD-------------GQIVY 405
++ VNC K I S +++L+PA E +FD + + ++
Sbjct: 346 NWKHVNCDKLTTIIESS---LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 406 QGPRELVLEFFE-SMGFKCPKRK--GVADFLQEVTSKKDQ---------EQYWAHKDRP- 452
+V + + S+ K PK + E+ K + + Y K
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 453 ------------YRFV-----------KVQEFVAAFQSFH-VGQKLSDELQTPFDKSKSH 488
Y + ++ F F F + QK+ + T ++ S S
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSI 520
Query: 489 RAALTT-KVYGVGKRELLKACTSRELL-------LMKRNSFVYIFK---LIQIG 531
L K Y K + E L L K + K L++I
Sbjct: 521 LNTLQQLKFY---KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 75.7 bits (185), Expect = 6e-14
Identities = 110/727 (15%), Positives = 209/727 (28%), Gaps = 248/727 (34%)
Query: 137 LPSFTKFFTTIFEDLLNYLHILPSTKKHLTILKDVSGIVKPGRL-TLLLGPPSSGKTTLL 195
+F F +D+ + + S ++ I+ + RL LL S + +
Sbjct: 26 EDAFVDNFD--CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SKQEEMVQ 80
Query: 196 LALAGKLDPS---LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAAR 252
+ L + L + +M T YI Q D + V FA
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMM------TRMYIEQRDRLYNDNQV-----FAKY 129
Query: 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVF-MKAASTEGEEANVITDYYLK-VLGLDI 310
V +R + +L R+ ++P ++ + + + G K + LD+
Sbjct: 130 --NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS---G-----------KTWVALDV 170
Query: 311 CADTMVGDEMRRGV---SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFK 367
C V +M + + T M+ L ++ D S+ ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----- 225
Query: 368 QNIHINSGTAVISLL---QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
I+S A + L +P + ++ + + + C
Sbjct: 226 ---RIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAW------------NAFNLSCK 267
Query: 425 KRKGVADFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHVGQKLSDELQTPFDK 484
L +T+ RF +V +F++A + H+ D
Sbjct: 268 -------IL--LTT---------------RFKQVTDFLSAATTTHI---SLDHHSMTLTP 300
Query: 485 SKSHRAALTTKVYGVGKREL-LKACTSRELLL-MKRNSFVYIFKLIQIGSITLVYMTLFF 542
+ +L K ++L + T+ L + I + I+ G T +
Sbjct: 301 DEV--KSLLLKYLDCRPQDLPREVLTTNPRRLSI-------IAESIRDGLATWDN----W 347
Query: 543 RTKMHKDSVTDGGIYAGALFFTIVMPLFSGFAEISMTIVKL-PVFYKQR--DFKFFPPWA 599
+ ++ D +T TI I ++ L P Y++ FPP A
Sbjct: 348 K-HVNCDKLT-----------TI----------IESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 600 YAIPSWILKIPISFLEPAVWVFLSYYVIGYDPNAGRFFKQYLLLLAFNQMISGLFRFLGA 659
IP L +W + VI D +++ L +
Sbjct: 386 --------HIPTILLS-LIW----FDVIKSDVM---------------VVVNKLHK---- 413
Query: 660 IGRNLVVAYTFGSFAVLVLLALGGFVLSREEVKKWWKWAYWSSPVMY-------AQNGIL 712
+LV +K K + S P +Y L
Sbjct: 414 --YSLV--------------------------EKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 713 ANEFLGH--SWKKFTPTSTESLGVQVLESREFFAHAYWYW-LG----------LGALFGF 759
+ H K F + L L+ Y+Y +G LF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQ-------YFYSHIGHHLKNIEHPERMTLFR- 494
Query: 760 ILLLNVGF---------------ALALTFLNQFEKPRAVITEEFESDEQDNRIGGTVQ-- 802
++ L+ F L L Q + + I ++D + R+ +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYERLVNAILDF 551
Query: 803 LSNCGES 809
L E+
Sbjct: 552 LPKIEEN 558
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 3e-08
Identities = 54/337 (16%), Positives = 108/337 (32%), Gaps = 71/337 (21%)
Query: 773 FLNQFEK----------PRAVITEEFESDE---QDNRIGGTVQLSNCGESGNDNR-ERNS 818
F + F P++++++E E D + + GT++L S + ++
Sbjct: 25 FEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83
Query: 819 SSSLTE-----AEASHPKKRGMVLPFEPYSLTFDEVV--------YSVDMPQQM-KLQGV 864
L ++R + Y D + Y+V Q KL+
Sbjct: 84 EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-- 141
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYITGDI---RISGY 920
L+ L RP + GV G+GKT + +DV K + I +
Sbjct: 142 --QALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 921 PKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL 980
+ + Q D + + + + ++S E+ L++
Sbjct: 193 NSPETVLEMLQKLLYQID--PNWTSRSDHSS-----NIKLRIHSIQ-----AELRRLLKS 240
Query: 981 KPLRQSLVGLPGVNG-------------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL- 1026
KP L+ L V L T + K++T + A + I +D + L
Sbjct: 241 KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLT 299
Query: 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1063
+++++ + V T + + I
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 9e-04
Identities = 65/373 (17%), Positives = 118/373 (31%), Gaps = 99/373 (26%)
Query: 401 GQIVYQGPRELVLEFFESM--GFKCPKRKGVADFLQEVTSKKDQEQYWAHKD---RPYRF 455
G+ YQ ++++ F ++ F C K V D + + SK++ + KD R
Sbjct: 12 GEHQYQY-KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 456 V-----KVQEFVAAFQSFHVGQKLSDE---LQTPFDKSKSHRAALTTKVYGVGKRELLKA 507
K +E V F V + L L +P K++ + ++ T++Y + +R+ L
Sbjct: 68 FWTLLSKQEEMVQKF----VEEVLRINYKFLMSPI-KTEQRQPSMMTRMY-IEQRDRL-- 119
Query: 508 CTSRELLLMKRNSFVYIFKLIQIGSITLVYMTLFFRTKMHKDSVTDG-GIYAGALFFTIV 566
++ K N V + Y+ L R + + I G
Sbjct: 120 YNDNQVF-AKYN--VSRLQP---------YLKL--RQALLELRPAKNVLID-G------- 157
Query: 567 MPLFSGFAEISMTIVKLPVFYKQRDFKFFPPWAYAIPSWI----LKIPISFLEPAVWVFL 622
+ G + + + +K + I W+ P + LE +
Sbjct: 158 VL---GSGKTWVALDVC------LSYKVQCKMDFKI-FWLNLKNCNSPETVLEM-LQKL- 205
Query: 623 SYYVIGYDPN-AGRFFKQYLLLLAFNQMISGLFRFLGAIGRNLVVAYTFGSFAVLVLLAL 681
Y I DPN R + L + + + L R L + LVL
Sbjct: 206 -LYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLL--KSKPYENCL-------LVL--- 250
Query: 682 GGFVLSREEVKKWWKWAYW------------SSPVMYAQNGILANEFLGHSWKKFTPTST 729
V+ W + + + L H TP
Sbjct: 251 -------LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 730 ESLGVQVLESREF 742
+SL ++ L+ R
Sbjct: 304 KSLLLKYLDCRPQ 316
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 3e-18
Identities = 46/185 (24%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETF 927
L +G + G + ++G +G GKTT +L G G +T + +I Y K Q F
Sbjct: 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 928 ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL 987
+ TV + +L + T F EEV + + L L +S
Sbjct: 341 P------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESN 382
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047
V N LS + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 383 V-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1048 VVCTI 1052
V I
Sbjct: 438 VTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 9e-12
Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 31/189 (16%)
Query: 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI 939
+ + ++G +G GKTT++ +LAG I + K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEI----IPNFGDPNSKVGKDEVLKRFRG----KEI 74
Query: 940 HSPFVTVYESLFYSAWLRLPP-------EVNSETRKMFIEEVMELVELKPLRQSLVGLPG 992
++ F +Y + L E S+ K + E++ ++ + + + L
Sbjct: 75 YNYFKELYSNE-------LKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 993 VNG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 128 MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK- 186
Query: 1045 GRTVVCTIH 1053
+ V+ H
Sbjct: 187 NKYVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 5e-09
Identities = 53/340 (15%), Positives = 101/340 (29%), Gaps = 99/340 (29%)
Query: 168 LKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYN-------GHN 218
K K + +LG GKTT+L LAG++ P+ + +V + G
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 MDEFVPE-----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAA 273
+ + E + Q+ + + GT E+LT++ R K
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333
+K ++ + +L SGG +R+
Sbjct: 121 EVKELLNMTNLW--------------NKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI------SLL 382
+V +L D+ S+ LD + ++ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG------PRELVLEFF------ESMGFKCPKRKGVA 430
L D I ++ VY R + F E+M + + K +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFML 254
Query: 431 DFLQEVTSKKDQEQYWAHKDRPYRFVKVQEFVAAFQSFHV 470
+ ++ KD + K+ +F +
Sbjct: 255 KEVSDLDLSKDLKTKM---KWTKIIKKLGDFQLVVDNGEA 291
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-08
Identities = 50/289 (17%), Positives = 90/289 (31%), Gaps = 84/289 (29%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L +G K G + +LGP GKTT L G++ G VT +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL------- 332
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
+Y Q I P+ D V
Sbjct: 333 --SYKPQR----------------------------------------IFPNYDGTVQQY 350
Query: 287 AASTEGEEANVITDYY---LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + + + ++ K L L ++ V D +SGG+ +++ + A
Sbjct: 351 LENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEAD 405
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTA-VIS----LLQPAPETYNLFDDIILL 398
+D+ S+ LD + + K+ +I + + D II+
Sbjct: 406 LYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHD------YIADRIIVF 459
Query: 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSKKDQEQY 445
G+ G + + G+ +FL+E VT ++D E
Sbjct: 460 -KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 5e-18
Identities = 57/288 (19%), Positives = 103/288 (35%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERT 227
LK ++ +K G +T +LG GK+TL G L PS SGR+ ++ +D +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279
+ + DN + +V + ++F A +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL----------------------- 115
Query: 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339
+E D LK G++ D +S GQKKRV
Sbjct: 116 -----------PEDEIRKRVDNALKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390
A+A L +DE + GLD +I+ + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-15
Identities = 53/215 (24%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYP--KKQETF 927
L G++ + G +TA++G +G GK+TL G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 928 ARIS---GYCEQNDIHSP---FV--TVYESL-FYSAWLRLPPEVNSETRKMFIEEVMELV 978
++ G Q+ P +VY+ + F + ++LP + E RK ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRT 131
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
++ L+ + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1039 RN-TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ G T++ H + D +F+MK G
Sbjct: 187 VEMQKELGITIIIATHDID-IVPLYCDNVFVMKEG 220
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 54/239 (22%), Positives = 97/239 (40%), Gaps = 35/239 (14%)
Query: 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL 902
+ V + +G P +K L VS G + G +G+GK+TL+ ++
Sbjct: 2 RIEVVNVSHIFH-------RGTPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIV 53
Query: 903 AG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLFYSAWLRLP 959
AG T +GD+ G KK R G Q F V++ + ++
Sbjct: 54 AGLIEPT----SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA------ 103
Query: 960 PE---VNSETRKMFIEEVMELVELKP---LRQSLVGLPGVNGLSTEQRKRLTIAVELVAN 1013
+ + + + +++ ME V L + P LS +++R+ IA +V
Sbjct: 104 VKNFYPDRDPVPL-VKKAMEFVGLDFDSFKDRV----P--FFLSGGEKRRVAIASVIVHE 156
Query: 1014 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
P I+ +DEP GLD ++R V G+TV+ H + D + ++++G
Sbjct: 157 PDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 56/270 (20%), Positives = 95/270 (35%), Gaps = 75/270 (27%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
T L++VS ++ G L+ G SGK+TLL +AG ++P+ SG V Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDG-- 68
Query: 219 MDEFVPE--RTAAYISQH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ E R Q+ ++ V + +AFA +
Sbjct: 69 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYP------------------- 109
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR----GVSGGQKKR 331
+ + ++ +GLD D + +SGG+K+R
Sbjct: 110 ----------------DRDPVPLVKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 332 VTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382
V A+A L +DE GLD ++ ++ G VI +
Sbjct: 147 V---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK-TLGKTVILIS 195
Query: 383 QPAPETYNLFDDIILLSDGQIVYQG-PREL 411
N D +++L G+ V+ G E
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 3e-15
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 39/204 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGDIRISGYPKKQETFA 928
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 929 R---ISGYCEQ--NDIHSPFVTVYES----LFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
R + G+ Q I P +T E+ + + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 980 L------KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1033
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1034 VMRTVRNTVDTGRTVVCTIHQPSI 1057
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 64/253 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFV 223
ILK +S VK G ++G SGK+TLL L G LD P+ G+V G +D
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPT---EGKVFLEGKEVDYTN 72
Query: 224 PERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
+ + ++ Q I E+T E + G + +E+
Sbjct: 73 EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKK-------EAKERG---- 121
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG---VSGGQKKRVT 333
E L LGL GD++ R +SGG+++RV
Sbjct: 122 ----------------EYL-------LSELGL--------GDKLSRKPYELSGGEQQRVA 150
Query: 334 TGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
+ P L LF DE TG LDS+ T ++++ F + I+ GT+++ ++ E L
Sbjct: 151 IARALANEPIL-LFADE-PTGNLDSANTKRVMDIFLK-IN-EGGTSIV-MVTHERELAEL 205
Query: 392 FDDIILLSDGQIV 404
+ + DG++V
Sbjct: 206 THRTLEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 38/215 (17%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YITGDIRISG 919
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G +I+ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 920 YPKKQETFAR---ISGYCEQ--NDIHSPFVTVYES----LFYSAWLRLPPEVNSETRKMF 970
+ T R I G+ Q N I P +T E+ L + + E R+
Sbjct: 72 LDDDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKR 124
Query: 971 IEEVMELVEL-------KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
E +++ EL KP N LS Q++R+ IA L NP II D+PT
Sbjct: 125 ALECLKMAELEERFANHKP-----------NQLSGGQQQRVAIARALANNPPIILADQPT 173
Query: 1024 SGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1057
LD++ +M+ ++ + G+TVV H ++
Sbjct: 174 WALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 52/256 (20%), Positives = 94/256 (36%), Gaps = 65/256 (25%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFV 223
+ LK+V+ +K G ++GP SGK+T+L + G LD P+ G V + ++
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTML-NIIGCLDKPT---EGEVYIDNIKTNDLD 73
Query: 224 PERTAAY-------ISQHDNHIGEMTVRETLAFAA---RCQGVGTRYEMLTELSRREKAA 273
+ + Q N I +T E + + RR++A
Sbjct: 74 DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-------ERRKRA- 125
Query: 274 GIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG---DEMRRGVSGGQKK 330
E LK+ L + +++ SGGQ++
Sbjct: 126 -------------------LEC-------LKMAEL---EERFANHKPNQL----SGGQQQ 152
Query: 331 RVTTGEMMV-GPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
RV + P + + D+ T LDS T +I+ K+ ++ G V+ ++
Sbjct: 153 RVAIARALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINV 208
Query: 389 YNLFDDIILLSDGQIV 404
+ II L DG++
Sbjct: 209 ARFGERIIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 2e-13
Identities = 48/204 (23%), Positives = 80/204 (39%), Gaps = 39/204 (19%)
Query: 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQ- 924
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 925 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLFYSAWLRLPPEVNSE 965
TF Q P +TV E S S + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 966 TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1026 LDARAAAIVMRTVRNTVDTGRTVV 1049
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 8e-11
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L VS V G +TL++GP SGK+TL+ + G L GRV + ++ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Y I Q + EMTV E L C G + + ++ +
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV----- 131
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE---- 336
E+A I L+ L L D G+ +SGGQ K V E
Sbjct: 132 ------------EKAFKI----LEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 3e-11
Identities = 64/275 (23%), Positives = 103/275 (37%), Gaps = 82/275 (29%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
IL+ +S V PG + ++GP SGK+TL LAG+ +V G V + G ++ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQ------GVGTRYEMLTELSRREKAAGIKPD 278
+R I +AF Q GV ++ + T L+ G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM-RRGV----SGGQKKRVT 333
D F + + +L + +++ R V SGG+KKR
Sbjct: 135 DRFD-FQDLMEEK-----------IALLKMP--------EDLLTRSVNVGFSGGEKKRND 174
Query: 334 TGEMMV-GPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINSGTAVIS--- 380
+M V P L + +DE +GLD I VN + +++
Sbjct: 175 ILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVTHYQ 224
Query: 381 -LLQPAPETYNLFDDIILLSDGQIVYQGPRELVLE 414
+L Y D + +L G+IV G LV +
Sbjct: 225 RILD-----YIKPDYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 56/199 (28%)
Query: 866 EDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---- 919
EDK +L G+S PG + A+MG +G+GK+TL LAGR+ Y +T G + G
Sbjct: 31 EDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFKGKDLL 87
Query: 920 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSA----WLRL 958
YP E I G V+ L + R
Sbjct: 88 ALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQFFLQTALNAVRSYRG 130
Query: 959 PPEVNSETRKMFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPS 1015
++ + +EE + L+++ L +S VN G S ++KR I V P
Sbjct: 131 QETLDRFDFQDLMEEKIALLKMPEDLLTRS------VNVGFSGGEKKRNDILQMAVLEPE 184
Query: 1016 IIFMDEPTSGLDARAAAIV 1034
+ +DE SGLD A +V
Sbjct: 185 LCILDESDSGLDIDALKVV 203
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 35/164 (21%), Positives = 64/164 (39%), Gaps = 30/164 (18%)
Query: 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGD-IRISGYPKKQETFAR 929
LLN + + G +G GK+TLM +A + G+ T + R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT------------ 497
Query: 930 ISGYCEQN-DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
Y E + D +V + +F E T++ I++ + ++
Sbjct: 498 --VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP 545
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
++ LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ----ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 9e-05
Identities = 28/132 (21%), Positives = 51/132 (38%), Gaps = 16/132 (12%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+ D++ ++GP +GK+TL+ L G+L P+ SG V N
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEVYT-HENC------- 736
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
AYI QH E + +T + + + R++ + ++A + D + K
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPS-----EYIQWRFQTGEDRETMDRANRQINENDAEAMNK 791
Query: 287 AASTEGEEANVI 298
EG +
Sbjct: 792 IFKIEGTPRRIA 803
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 40/219 (18%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L VS PG AL+G SGAGK+T++ D+ +G IRI G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 925 ETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VM 975
T A G Q ND T+ +++ Y EV + + I + +M
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174
Query: 976 ELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1034
P ++ VG G+ LS +++R+ IA ++ P II +DE TS LD +
Sbjct: 175 AF----PEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAI 229
Query: 1035 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
++ V RT + H+ S + A D++ ++K G
Sbjct: 230 QASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 49/223 (21%), Positives = 87/223 (39%), Gaps = 72/223 (32%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
D V+L+ ++ + + G + ++G SG+GK+TL G+ + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLI 68
Query: 918 SGYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960
G+ Q+ R ++ +++ + P
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----P 108
Query: 961 EVNSETRKMFIEEVME----------LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL 1010
++ +E+V+ + EL+ ++VG G LS QR+R+ IA L
Sbjct: 109 GMS-------VEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARAL 160
Query: 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1053
V NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 7e-06
Identities = 56/271 (20%), Positives = 100/271 (36%), Gaps = 97/271 (35%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL +++ +K G + ++G SGK+TL + P +G+V +GH++ P
Sbjct: 23 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPN 79
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
R + Q DN + ++ + ++ A P ++
Sbjct: 80 WLRRQVGVVLQ-DNVLLNRSIIDNISLA-------------------------NPGMSVE 113
Query: 283 VFMKAASTEGEEANV---ITD----YYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVT 333
+ AA + A I++ Y +T+VG+ +G SGGQ++R+
Sbjct: 114 KVIYAA----KLAGAHDFISELREGY-----------NTIVGE---QGAGLSGGQRQRI- 154
Query: 334 TGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQ----NIHINSGTAVI- 379
A+A L DE ++ LD + I I +I
Sbjct: 155 --------AIARALVNNPKILIFDEATSALDYESEHVI-----MRNMHKICKGRTVIIIA 201
Query: 380 ---SLLQPAPETYNLFDDIILLSDGQIVYQG 407
S ++ A D II++ G+IV QG
Sbjct: 202 HRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 5e-10
Identities = 70/277 (25%), Positives = 108/277 (38%), Gaps = 77/277 (27%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKV-SGRVTYNGHNMDEFVP- 224
ILK V+ +V G + L+GP +GK+TL LAG P V G + +G N+ E P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGENILELSPD 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQ------GVGTRYEMLTELSRREKAAGIKPD 278
ER + LAF Q GV + L + +
Sbjct: 76 ERARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKL-----GRE 112
Query: 279 PDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM- 337
+ F L++L D ++ + + G SGG+KKR ++
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD---ESYLSRYLNEGFSGGEKKRNEILQLL 158
Query: 338 MVGPALALFMDEISTGLDSSTTFQI---------VNCFKQNIHINSGTAVIS----LLQP 384
++ P A+ +DE +GLD I VN + N G VI+ +L
Sbjct: 159 VLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQRILN- 207
Query: 385 APETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
Y D + ++ DG++V G EL LE E+ G+
Sbjct: 208 ----YIQPDKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 53/193 (27%), Positives = 78/193 (40%), Gaps = 51/193 (26%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IT-GDIRISG---------- 919
L GV+ G + ALMG +GAGK+TL +LAG Y + G+I + G
Sbjct: 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSPDE 76
Query: 920 -----------YPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRK 968
YP E + G VT+ L + +L EV
Sbjct: 77 RARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAEFW 119
Query: 969 MFIEEVMELVELKP--LRQSLVGLPGVN-GLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1025
+++ +EL++ L + +N G S ++KR I LV P+ +DE SG
Sbjct: 120 TKVKKALELLDWDESYLSRY------LNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSG 173
Query: 1026 LDARAAAIVMRTV 1038
LD A +V R V
Sbjct: 174 LDIDALKVVARGV 186
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-ITGDIRISGYPKKQETFA-- 928
L ++ G AL+G +G+GK+T+ +L R Y GDI+I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 929 -RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELK 981
I G Q N+ T+ ++ Y EV T+ + + + L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEAL---- 141
Query: 982 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
P + ++VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ + + V +
Sbjct: 142 PKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED 200
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073
+ RT++ H+ S I A + + L+ +G
Sbjct: 201 -LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 52/266 (19%), Positives = 101/266 (37%), Gaps = 78/266 (29%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNM 219
+ + LK ++ + G L+G SGK+T+ KL G + G N+
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIA-----KLLYRFYDAEGDIKIGGKNV 83
Query: 220 DEFVPERTAAYISQHD--NHIG---------EMTVRETLAFAARCQGVGTRYEMLTELSR 268
++ +++ + IG T++ + +
Sbjct: 84 NK---------YNRNSIRSIIGIVPQDTILFNETIKYNILYG------------------ 116
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SG 326
K D + +KA + A + Y + L DT+VG+ +G+ SG
Sbjct: 117 -------KLDATDEEVIKAT----KSAQL----YDFIEALPKKWDTIVGN---KGMKLSG 158
Query: 327 GQKKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVI----SL 381
G+++R+ ++ P + + DE ++ LDS T + +++ N +I S
Sbjct: 159 GERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAV-EDLRKNRTLIIIAHRLST 216
Query: 382 LQPAPETYNLFDDIILLSDGQIVYQG 407
+ A + IILL+ G+IV +G
Sbjct: 217 ISSA-------ESIILLNKGKIVEKG 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 65/302 (21%), Positives = 102/302 (33%), Gaps = 108/302 (35%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
L ++ + G L ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
+ AY+ Q I ++RE + F G + E I+ PD+++
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLEE----PYYRSV--IQACALLPDLEI 112
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
G+ T +G+ +GV SGGQK+RV
Sbjct: 113 L-----PSGDR-------------------TEIGE---KGVNLSGGQKQRV--------- 136
Query: 342 ALA----------LFMDEISTGLDSSTTFQIVNCFKQNIHIN---SGTAVI------SLL 382
+LA LF D +S +D+ I F+ I I S L
Sbjct: 137 SLARAVYSNADIYLFDDPLS-AVDAHVGKHI---FENVIGPKGMLKNKTRILVTHSMSYL 192
Query: 383 QPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSKKDQ 442
D II++S G+I G + +L + A+FL+ S
Sbjct: 193 PQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHH 235
Query: 443 EQ 444
Sbjct: 236 HH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 47/216 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
LNG++ + G L A++G G GK++L+ L K G + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 930 ISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LR 984
++ Y Q ++ ++ E+ LF + + + V++ L P L
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILF-----------GCQLEEPYYRSVIQACALLPDLE 111
Query: 985 ------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
++ +G GVN LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 112 ILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
Query: 1039 --RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +T + H + D + +M G
Sbjct: 171 IGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 5e-09
Identities = 49/210 (23%), Positives = 90/210 (42%), Gaps = 54/210 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
+ + +L +S +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITI 61
Query: 918 SGYPKKQETFA----RISGYCEQNDIHSPFV---TVYESLFYSAWLRLPPEVNSETRKMF 970
G P + +I G+ Q+ + T+ E+L Y L + E
Sbjct: 62 DGQPIDNISLENWRSQI-GFVSQD----SAIMAGTIRENLTYG----LEGDYTDE----- 107
Query: 971 IEEVMELVELKPLRQSLVGLPGVNGLSTE-----------QRKRLTIAVELVANPSIIFM 1019
++ ++++L R + +P + L+TE QR+RL IA + NP I+ +
Sbjct: 108 --DLWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILML 163
Query: 1020 DEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
DE T+ LD+ + ++V + + +++ GRT +
Sbjct: 164 DEATASLDSESESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 5e-08
Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL+D+S +P + GP GK+T+ L P+ +G +T +G +D E
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLEN 73
Query: 226 -RTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R+ ++SQ D+ I T+RE L + G++ D +
Sbjct: 74 WRSQIGFVSQ-DSAIMAGTIRENLTY------------------------GLEGDYTDED 108
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMV 339
+ + A +++ + L +T VG+ RGV SGGQ++R+ +
Sbjct: 109 LWQVL----DLAFA--RSFVENMPDQL----NTEVGE---RGVKISGGQRQRLAIARAFL 155
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCFKQ----NIHINSGTAVI----SLLQPAPETYNL 391
L +DE + LDS + + Q ++ T VI S + A
Sbjct: 156 RNPKILMLDEATASLDSESESMV-----QKALDSLMKGRTTLVIAHRLSTIVDA------ 204
Query: 392 FDDIILLSDGQIVYQG 407
D I + GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 5e-09
Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 17/147 (11%)
Query: 886 ALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQNDIHSP 942
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002
++VY ++ Y LR V + R + E+ E + + L LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1003 RLTIAVELVANPSIIFMDEPTSGLDAR 1029
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 183 LLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-RTAAYISQ------HD 235
LLGP +GK+ L +AG + P G V NG ++ PE R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFAAR 252
++V +A+ R
Sbjct: 85 -----LSVYRNIAYGLR 96
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 6e-09
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 16/121 (13%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+K + V G++ L+G +GKTT L A+AG + G++ +NG ++
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFAAR-CQGVGTRYEMLTEL-----SRREKAA 273
A + + E+TV E L A+ + +G+ E + L R ++
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLG 137
Query: 274 G 274
G
Sbjct: 138 G 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 28/193 (14%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKK 923
+ + G+ G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 924 QETFARISGYCEQNDIHSP-----F--VTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
I+ P F +TVYE+L A+ R E +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD----LEWIFS 124
Query: 977 LV-ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
L LK + L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1036 RTVRNTVDTGRTV 1048
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 8e-08
Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
+ GVS R G + L+G SG+GKTT++ ++AG R T G + G R++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
R G QN +TVY+++ + + P+ + R + E++ + L+
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 8e-07
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP- 224
++ VS ++ G + LLGP SGKTT+L +AG P+ G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFAARCQGV 256
+R + Q+ H MTV + ++F R + V
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRV 117
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 56/279 (20%), Positives = 101/279 (36%), Gaps = 100/279 (35%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ ++ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
++ SQ + I T++E + F G Y+ R IK + DI
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
F E + ++G+ G+ SGGQ+ R+
Sbjct: 116 F-----AEKDN-------------------IVLGE---GGITLSGGQRARI--------- 139
Query: 342 ALA----------LFMDEISTGLDSSTTFQIVNCFKQNIH-INSGTAVI------SLLQP 384
+LA L LD T +I F+ + + + I L+
Sbjct: 140 SLARAVYKDADLYLLDSPFGY-LDVLTEKEI---FESCVCKLMANKTRILVTSKMEHLKK 195
Query: 385 APETYNLFDDIILLSDGQIVYQGP-RELV---LEFFESM 419
A D I++L +G + G EL +F +
Sbjct: 196 A-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 2e-06
Identities = 41/214 (19%), Positives = 84/214 (39%), Gaps = 45/214 (21%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G L A+ G +GAGKT+L+ ++ G + G I+ SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 930 ISGYCEQNDIHSPFV---TVYES-LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
IS +C Q ++ T+ E+ +F + V++ +L+
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF-----------GVSYDEYRYRSVIKACQLEEDIS 114
Query: 986 SL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
+G G+ LS QR R+++A + + + +D P LD + +
Sbjct: 115 KFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173
Query: 1039 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ +T + + ++ + D++ ++ G
Sbjct: 174 VCKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 9e-08
Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 46/187 (24%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
P ++ L ++ G AL+G SG+GK+T+ D+ G I +
Sbjct: 352 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILM 402
Query: 918 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
G+ ++ T A Q ND TV ++ Y+ E S +
Sbjct: 403 DGHDLREYTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSREQ-- 449
Query: 970 FIEE------VMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
IEE M+ + +++G GV LS QR+R+ IA L+ + I+ +DE
Sbjct: 450 -IEEAARMAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEA 507
Query: 1023 TSGLDAR 1029
TS LD
Sbjct: 508 TSALDTE 514
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 1e-07
Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 35/204 (17%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIT-GDIRISGYPK 922
+L +S + PG L+G +G+GK+TL+ T G I +
Sbjct: 31 EGGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITL 89
Query: 923 KQETFARISGYCEQNDI--HSPFVTVYESLFYSAWLRL---PPEVNSETRKMFIEEVMEL 977
++ + F +F S R P +S+ I +V +
Sbjct: 90 -EQWRKAFG-------VIPQKVF------IF-SGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 978 VELKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030
V L+ + + + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCV-LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVT 190
Query: 1031 AAIVMRTVRNTVDTGRTVVCTIHQ 1054
I+ RT++ TV+ +
Sbjct: 191 YQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-07
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 42/220 (19%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKKQ 924
L G+S + G AL+G SG GK+T++ D +AG + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 925 ETFARISGYCEQNDIHS--PFV---TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE 979
+ Q I S P + ++ E++ Y V S I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYG----DNSRVVSYEE---IVRAAKEAN 1149
Query: 980 LKPLRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032
+ SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1033 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+V + + GRT + H+ S I A D + +++ G
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAHRLST-IQNA-DLIVVIQNG 1245
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1046
LVG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + GR
Sbjct: 519 LVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-AREGR 576
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRG 1072
T + H+ S + A D + G
Sbjct: 577 TTIVIAHRLST-VRNA-DVIAGFDGG 600
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-07
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 47/187 (25%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRI 917
++K L + VS + G AL+G SG+GK+T+ DV +G I +
Sbjct: 353 GKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICL 402
Query: 918 SGYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM 969
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 403 DGHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ--- 449
Query: 970 FIEE------VMELVELKPLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022
IE+ ME +E P +++G G + LS QR+R+ IA L+ + ++ +DE
Sbjct: 450 -IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEA 507
Query: 1023 TSGLDAR 1029
TS LD
Sbjct: 508 TSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 48/174 (27%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
L VS + G+ L+G SGK+T+ D SG + +GH++ ++
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTN 414
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R A +SQ + H+ T+ +A+ + + +
Sbjct: 415 LRRHFALVSQ-NVHLFNDTIANNIAY------------------------AAEGEYTREQ 449
Query: 284 FMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDEMRRGV--SGGQKKRVT 333
+AA +A+ +++ + GL DT++G+ G SGGQ++RV
Sbjct: 450 IEQAA----RQAHA--MEFIENMPQGL----DTVIGE---NGTSLSGGQRQRVA 490
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 48/186 (25%), Positives = 84/186 (45%), Gaps = 46/186 (24%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY--- 920
+ K+V L+ V+ G ++G SGAGKTT M ++AG + G++
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVA 70
Query: 921 --------PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLR-LPPEVNSETRK 968
P+ ++ F Q P +T +E++ + + E E RK
Sbjct: 71 SNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKE---EIRK 119
Query: 969 MFIEEVMELVELKPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPT 1023
+EEV +++++ + R+ LS Q++R+ +A LV +PS++ +DEP
Sbjct: 120 R-VEEVAKILDIHHVLNHFPRE----------LSGAQQQRVALARALVKDPSLLLLDEPF 168
Query: 1024 SGLDAR 1029
S LDAR
Sbjct: 169 SNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 38/194 (19%), Positives = 65/194 (33%), Gaps = 56/194 (28%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L +V+ ++ G +LGP +GKTT + +AG PS +G + ++ D V
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFD----DRLVAS 71
Query: 226 RTAAYISQHDNHIG----------EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
+ D IG +T E +AF +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKM------------------- 112
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
+I ++ K+L + V + R +SG Q++RV
Sbjct: 113 -SKEEIRKRVEEV--------------AKILDI-----HHVLNHFPRELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDE 349
+V L +DE
Sbjct: 153 RALVKDPSLLLLDE 166
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 3e-07
Identities = 44/217 (20%), Positives = 72/217 (33%), Gaps = 71/217 (32%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYITGDIRISGYPKK- 923
L G++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 924 --------------QET--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETR 967
QE F R + E++ Y +
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYGL-----TRTPTM-- 123
Query: 968 KMFIEEVME----------LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII 1017
EE+ + + VG G LS QR+ + +A L+ P ++
Sbjct: 124 ----EEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLL 178
Query: 1018 FMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1053
+D TS LDA V R + + RTV+
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-05
Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 102/280 (36%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGRVTYNGHNM 219
++ +L+ ++ + PG++T L+GP SGK+T + AL L P G+V +G +
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST-VAALLQNLYQP---TGGKVLLDGEPL 83
Query: 220 DEFVPE---RTAAYISQHDNHIGE-----MTVRETLAFAARCQGVGTRYEMLTELSRREK 271
++ A + Q E + RE +A+
Sbjct: 84 VQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY---------------------- 115
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANV---ITD----YYLKVLGLDICADTMVGDEMRRGV 324
G+ P ++ A E+ I+ Y DT VG+ G
Sbjct: 116 --GLTRTPTMEEITAVA----MESGAHDFISGFPQGY-----------DTEVGE---TGN 155
Query: 325 --SGGQKKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCFKQNIHIN 373
SGGQ++ V ALA L +D ++ LD+ V
Sbjct: 156 QLSGGQRQAV---------ALARALIRKPRLLILDNATSALDAGNQ-LRVQRLLYESPEW 205
Query: 374 SG--TAVI----SLLQPAPETYNLFDDIILLSDGQIVYQG 407
+ +I SL + A I+ L +G + QG
Sbjct: 206 ASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-07
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN +S + PG + ++G SG GKTTL+ LAG + G I+ I
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 929 RISGYCEQNDIHS--PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS 986
R GY Q P +TVY ++ Y L ++ R + + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYG--LGNGKGRTAQER----QRIEAMLEL------ 125
Query: 987 LVGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
G+ + G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE---F 222
+L D+S + PG + ++G GKTTLL LAG P SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFAARCQGVG 257
+P ER Y+ Q H +TV +A+
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGR 111
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 7e-07
Identities = 48/167 (28%), Positives = 76/167 (45%), Gaps = 26/167 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
LN VS G + ++G SGAGK+TL+ + R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 929 RIS-GYCEQ--NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
R G Q N + S TV+ ++ P E+++ + V EL+ L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLSL----- 150
Query: 986 SLVGLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027
VGL + LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 151 --VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 59/312 (18%), Positives = 100/312 (32%), Gaps = 89/312 (28%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+ + L +VS V G++ ++G +GK+TL+ + P+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 91
Query: 219 MDEFVPERTAAY------ISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+ I QH N + TV +A + +
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 144
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
+ L ++GL D+ + +SGGQK+RV
Sbjct: 145 TEL---------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 172
Query: 333 TTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCFKQNIHINSGT----------- 376
+ ALA L D+ ++ LD +TT I+ K IN
Sbjct: 173 A-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITHEM 224
Query: 377 AVISLLQPAPETYNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
V+ + D + ++S+G+++ Q V E F PK F+Q
Sbjct: 225 DVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQST 267
Query: 437 TSKKDQEQYWAH 448
E Y
Sbjct: 268 LHLDIPEDYQER 279
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 54/269 (20%), Positives = 99/269 (36%), Gaps = 98/269 (36%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
+LKD++ ++ G+L + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP---DPDIDV 283
++ SQ ++ I T++E + +G Y+ R IK + DI
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV--SGGQKKRVTTGEMMVGP 341
F E + ++G+ G+ SGGQ+ R+
Sbjct: 145 F-----AEKDN-------------------IVLGE---GGITLSGGQRARI--------- 168
Query: 342 ALA----------LFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAVI------SLLQP 384
+LA L LD T +I +C + + + I L+
Sbjct: 169 SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILVTSKMEHLKK 224
Query: 385 APETYNLFDDIILLSDGQIVYQGP-RELV 412
A D I++L +G + G EL
Sbjct: 225 A-------DKILILHEGSSYFYGTFSELQ 246
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 41/221 (18%), Positives = 85/221 (38%), Gaps = 60/221 (27%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G L A+ G +GAGKT+L+ ++ G + G I+ SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 930 ISGYCEQNDIHSPFV---TV--------YESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
IS +C Q + ++ T+ Y+ Y V++
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSYDEYRY-------------------RSVIKAC 136
Query: 979 ELKP-LR------QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+L+ + ++G G+ LS QR R+++A + + + +D P LD
Sbjct: 137 QLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 195
Query: 1032 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ + + +T + + ++ + D++ ++ G
Sbjct: 196 KEIFESCVCKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L+ +S G ++G +GAGKT ++++AG G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEE-VMELVELKPLRQSL 987
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 988 VGLPGVNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L ++S V+ G ++LGP +GKT L +AG P SGR+ +G ++ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFAARCQGV 256
A++ Q H M V++ L F R + +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI 102
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 3e-06
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 996 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1050 CTIHQPSIDIFEAFDELFLMKRGG 1073
H ++ +A D + +
Sbjct: 309 LVSHDE--ELKDAADHVIRISLEN 330
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 52/183 (28%), Positives = 80/183 (43%), Gaps = 34/183 (18%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY----- 920
LN ++ + G AL+G SG+GK+TL+ +AG T G I
Sbjct: 14 GNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTEL 70
Query: 921 -PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
PK + F QN P +TVY+++ + LR P + + + EV +
Sbjct: 71 PPKDRNVGLVF--------QNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAK 119
Query: 977 LVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1034
++ + L L P LS Q++R+ IA LV P ++ +DEP S LDA R
Sbjct: 120 MLHIDKL---LNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE--- 171
Query: 1035 MRT 1037
+R
Sbjct: 172 VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 34/163 (20%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY------PKKQE---TFARISGYCEQ 936
L+G SG GKTT + ++AG + T G I PK + F Q
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPKDRNISMVF--------Q 90
Query: 937 NDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996
+ P +TVYE++ + ++ P+ + R + EL++++ L L P L
Sbjct: 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEEL---LNRYPA--QL 142
Query: 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1037
S QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 54/188 (28%), Positives = 79/188 (42%), Gaps = 44/188 (23%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGY----- 920
K+ ++GVS + G AL+G SG GKTT + +LAG T G+I
Sbjct: 14 GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDI 70
Query: 921 -PKKQET---FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVME 976
PK +E F QN P +TV+E++ + R + E R + E+
Sbjct: 71 PPKYREVGMVF--------QNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIAR 119
Query: 977 LVELKPL-----RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--R 1029
+ + L Q LS Q++R+ +A LV P ++ DEP S LDA R
Sbjct: 120 KLLIDNLLDRKPTQ----------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 1030 AAAIVMRT 1037
MR
Sbjct: 170 MI---MRA 174
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029
+ VG GV LS Q++RL+IA + NP I+ +DE TS LD
Sbjct: 468 DTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLE 511
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 44/202 (21%), Positives = 88/202 (43%), Gaps = 32/202 (15%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L GVS R G + +++G SG+GK+T + + + + G I + + + ++ +
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81
Query: 930 ISGYCEQNDIHS------------PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
++ + + + +TV E++ + P +V ++ E ++
Sbjct: 82 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERALKY 136
Query: 978 VELKPLRQSLVGLPG-VNG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1031
+ VG+ G LS Q++R++IA L P ++ DEPTS LD
Sbjct: 137 LAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1032 AIVMRTVRNTVDTGRTVVCTIH 1053
V+R ++ + G+T+V H
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH 211
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 49/164 (29%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 887 LMGVSGAGKTTLMDVLAGRKTGGYIT-GDIRISGYPKKQETFARISGYCE---------- 935
L+G SG GKTT + ++AG + + G I I K +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVF 87
Query: 936 QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995
Q+ P +TVY+++ + LR P + R + EV EL+ L L L P
Sbjct: 88 QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRKPR--E 139
Query: 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1037
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 6e-04
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1061
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1062 AFDELFLM-----KRGGREV 1076
A D + + V
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 50/190 (26%), Positives = 77/190 (40%), Gaps = 20/190 (10%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGD-IRISGYPKKQETFA 928
L G++ R G + ++G SG+GK+T + L G I D I +
Sbjct: 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVR 99
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV 988
G Q P +TV ++ + P +V R+ + MEL++ V
Sbjct: 100 EEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDK-------V 147
Query: 989 GLPG-----VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043
GL + LS Q +R+ IA L P I+ DEPTS LD V+ ++ +
Sbjct: 148 GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 1044 TGRTVVCTIH 1053
G T+V H
Sbjct: 208 EGMTMVVVTH 217
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1106 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.97 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.96 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.92 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.91 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.89 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.88 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.87 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.87 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.84 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.84 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.82 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.82 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.81 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.81 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.8 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.79 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.76 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.75 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.75 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.74 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.74 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.73 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.73 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.72 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.72 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.72 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.71 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.69 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.69 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.67 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.67 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.66 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.64 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.64 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.64 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.63 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.61 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.6 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.59 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.59 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.59 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.58 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.57 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.55 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.55 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.54 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.53 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.52 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.51 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.51 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.49 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.49 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.49 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.49 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.49 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.48 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.48 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.47 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.46 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.46 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.45 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.45 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.42 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.42 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.41 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.4 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.38 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.38 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.38 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.35 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.34 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.32 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.3 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.3 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.29 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.26 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.26 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.26 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.26 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.25 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.24 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.24 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.23 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.2 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.2 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.19 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.19 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.19 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.19 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.16 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.16 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.16 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.15 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.12 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.11 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.11 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.11 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.1 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.09 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.09 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.08 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.07 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.03 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.02 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.01 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.01 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.01 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.0 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.0 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.0 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.0 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.99 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.97 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.96 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.96 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.94 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.91 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.9 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.88 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.87 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.87 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.86 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.81 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.81 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.81 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.81 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.79 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.78 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.78 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.75 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.73 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.71 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.71 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.68 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.65 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.65 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.64 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.63 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.6 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.59 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.56 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.55 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.54 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.5 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.5 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.49 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.48 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.48 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.43 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.43 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.38 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.36 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.35 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.34 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.34 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.33 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.33 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.32 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.32 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.32 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.31 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.28 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.25 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.24 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.21 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.18 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.14 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.06 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.04 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.02 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.97 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.95 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.95 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.95 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.89 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.89 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.87 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.86 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.85 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.85 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.85 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.79 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.79 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.75 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.72 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.72 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.68 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.65 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.62 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.61 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.57 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.55 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.54 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.54 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.52 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.51 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.5 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.46 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.46 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.41 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.39 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.39 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.39 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.37 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.37 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.37 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.36 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.34 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.33 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.33 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.31 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.3 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.28 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.27 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.26 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.26 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.25 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.24 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.24 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.21 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.2 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.14 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.12 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 97.12 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.11 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.08 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.07 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.04 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.04 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.03 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.99 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.98 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 96.86 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.86 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.83 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.81 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.78 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.74 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.74 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.73 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.72 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.7 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.68 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.65 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.63 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.62 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.62 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.61 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.61 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.6 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.56 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.56 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.52 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.52 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.51 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.5 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.49 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.48 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.47 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.47 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.39 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.39 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.28 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.26 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.25 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.2 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.19 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.16 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.15 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.12 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.11 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.08 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.08 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.08 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.08 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.05 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.03 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.96 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.94 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.93 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.93 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.9 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.88 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.86 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.85 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.82 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.74 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 95.73 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.72 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.7 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.69 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.68 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.67 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 95.67 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.67 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.65 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.63 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.63 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.62 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.6 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.55 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 95.51 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.48 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.47 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.46 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.45 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.45 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.45 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.4 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.37 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.36 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.36 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.3 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.29 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.22 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.2 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.15 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.14 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.07 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.06 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.04 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.02 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.01 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 94.99 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.87 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 94.84 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 94.8 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.79 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.77 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 94.77 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.76 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.74 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 94.73 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.72 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 94.67 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 94.66 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.65 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.62 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.56 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 94.51 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.47 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.44 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.43 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.4 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 94.36 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 94.34 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.32 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.3 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 94.29 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 94.29 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.26 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 94.23 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 94.22 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.22 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.21 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.18 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.18 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.17 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 94.16 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 94.16 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 94.11 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.04 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-75 Score=769.68 Aligned_cols=217 Identities=26% Similarity=0.381 Sum_probs=182.7
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|+|+.. ++.++|+||||+|+|||++|||||||||||||+++|.|..++ .+|.|.|||.+
T Consensus 1075 g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~d 1142 (1321)
T 4f4c_A 1075 GKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSE 1142 (1321)
T ss_dssp CCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEE
T ss_pred CeEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC--CCCEEEECCEE
Confidence 369999999998642 234699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+++ ..+|+.++||||++.++. -|++|||.|+.. +. +..++.++++++..++.+.. |..+|..
T Consensus 1143 i~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gld---~~----~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~ 1214 (1321)
T 4f4c_A 1143 IKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGLD---PS----SVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214 (1321)
T ss_dssp TTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSSC---TT----TSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT
T ss_pred hhhCCHHHHHhheEEECCCCEeeC-ccHHHHHhccCC---CC----CCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCC
Confidence 765 456788999999998875 699999987631 11 12345688899999886543 3445544
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++. ...||+|++|+
T Consensus 1215 G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld- 1289 (1321)
T 4f4c_A 1215 G-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVS- 1289 (1321)
T ss_dssp S-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEES-
T ss_pred C-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH--HHhCCEEEEEE-
Confidence 4 4699999999999999999999999999999999999999999999875 48999999999984 57899999997
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
+|++++.|++.+
T Consensus 1290 ~G~IvE~Gth~e 1301 (1321)
T 4f4c_A 1290 NGTIIEKGTHTQ 1301 (1321)
T ss_dssp SSSEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 579999998653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-69 Score=709.89 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=175.8
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||++.|+..+ +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 1029 g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p--~~G~I~i~g~~ 1096 (1284)
T 3g5u_A 1029 GNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP--MAGSVFLDGKE 1096 (1284)
T ss_dssp CCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC--SEEEEESSSSC
T ss_pred CcEEEEEEEEECCCCC----------CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 3689999999886321 23589999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
++. ...++.+|||+|++.++ ..||+||+.++...+ ... ++.++++++..++.+.. +..++..
T Consensus 1097 i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~----~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1097 IKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVS----YEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp TTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCC----HHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred cccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCC----HHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 754 34567899999999766 479999998763211 111 23355666666665433 3334443
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+|||||||||+.+++.|++.|+++. +|+|||+||||++. + ..||||++|+
T Consensus 1169 G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~- 1243 (1284)
T 3g5u_A 1169 G-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ- 1243 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE-
T ss_pred C-CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecCHHH-H-HcCCEEEEEE-
Confidence 3 4699999999999999999999999999999999999999999998864 59999999999984 4 6699999998
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
+|++++.|+..+
T Consensus 1244 ~G~i~~~g~~~~ 1255 (1284)
T 3g5u_A 1244 NGKVKEHGTHQQ 1255 (1284)
T ss_dssp TBEEEEEECHHH
T ss_pred CCEEEEECCHHH
Confidence 579999998643
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=563.79 Aligned_cols=203 Identities=24% Similarity=0.297 Sum_probs=166.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 357 ~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC-----
T ss_pred EEEEeceEEEec-------------c-eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEE-----
Confidence 477788776542 1 268999999999999999999999999999999997664 3677765
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.+.+||++|++...+.+||.|++.+...... ...+.++++++.+++.+..++.+ .+|||||||
T Consensus 416 -----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~Q 478 (607)
T 3bk7_A 416 -----DLTVAYKPQYIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQ 478 (607)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHH
T ss_pred -----eeEEEEEecCccCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 2358999999877778999998765311100 11245788999999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~ 1080 (1106)
||+|||||+.+|+||||||||+|||+.++..++++|++++ +.|.|||+||||++ .+...||++++|+. .|+++..|+
T Consensus 479 Rv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~ 557 (607)
T 3bk7_A 479 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALP 557 (607)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCC
Confidence 9999999999999999999999999999999999999986 46999999999997 47788999999973 267778888
Q ss_pred CCCc
Q 001291 1081 LGHH 1084 (1106)
Q Consensus 1081 ~~~~ 1084 (1106)
+.+.
T Consensus 558 p~~~ 561 (607)
T 3bk7_A 558 PMGM 561 (607)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 7653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-58 Score=559.26 Aligned_cols=203 Identities=25% Similarity=0.301 Sum_probs=165.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 287 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDYG-------------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC-----
T ss_pred EEEEeeEEEEEC-------------C-EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEE-----
Confidence 467778776542 2 368999999999999999999999999999999997653 3677764
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
...+||++|++...+.+||.|++........ . ..+.++++++.+++.+..++.+ .+|||||||
T Consensus 346 -----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~q 408 (538)
T 1yqt_A 346 -----DLTVAYKPQYIKADYEGTVYELLSKIDASKL----N---SNFYKTELLKPLGIIDLYDREV-----NELSGGELQ 408 (538)
T ss_dssp -----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH----T---CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHH
T ss_pred -----CceEEEEecCCcCCCCCcHHHHHHhhhccCC----C---HHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 1358999999877778999888764311110 0 1235678899999987777664 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~ 1080 (1106)
||+|||||+.+|++|||||||+|||+.++..|+++|++++ +.|.|||+||||++ ++...||++++|++ .|+++..|+
T Consensus 409 rv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 409 RVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALP 487 (538)
T ss_dssp HHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCC
Confidence 9999999999999999999999999999999999999986 45999999999997 47788999999984 267888888
Q ss_pred CCCc
Q 001291 1081 LGHH 1084 (1106)
Q Consensus 1081 ~~~~ 1084 (1106)
+.+.
T Consensus 488 ~~~~ 491 (538)
T 1yqt_A 488 PMGM 491 (538)
T ss_dssp CEEH
T ss_pred HHHH
Confidence 7653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-57 Score=543.75 Aligned_cols=215 Identities=21% Similarity=0.247 Sum_probs=169.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.+++++..++ + ..|+++||+|++||++||+||||||||||+++|+|..++ .+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC---
T ss_pred eEEEcceEEEEC-------------C-EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECC---
Confidence 466677665442 1 357888999999999999999999999999999998764 478888754
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
+.++|++|+....+..||+|++.+..... ... ....++++++.+++.+..++.+ .+|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~----~~~--~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASKDA----LST--SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCSST----TCT--TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------eeeEeechhcccccCCCHHHHHHHhhhhc----cch--hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 24799999877666789999997642111 001 1234678899999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecC-CEEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GREVYVGP 1080 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~g-G~~~~~G~ 1080 (1106)
||+|||||+.+|+||||||||+|||+.++..++++|+++++ .|.|||+||||++ ++...|||+++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCC
Confidence 99999999999999999999999999999999999999974 5899999999997 477889999999742 44555555
Q ss_pred CCCchhHHHHHHHh
Q 001291 1081 LGHHSCHLISYFEV 1094 (1106)
Q Consensus 1081 ~~~~~~~~~~yf~~ 1094 (1106)
+......+..|+..
T Consensus 472 ~~~~~~~~~~~~~~ 485 (538)
T 3ozx_A 472 PVTLKTGMNEFLRE 485 (538)
T ss_dssp CEEHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhh
Confidence 54433445556543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=555.09 Aligned_cols=184 Identities=22% Similarity=0.268 Sum_probs=151.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+.+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... ...++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCcccc---ceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 3333211 12478999874 67889999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 322 (1106)
.|++.+ ...+ . ...++.+++.+||+ ...+..+++
T Consensus 514 ~e~l~~--~~~~----------~-----------------------------~~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVG----------T-----------------------------KEAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSS----------C-----------------------------HHHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--hhcC----------H-----------------------------HHHHHHHHHHcCCChhhhcCCccc----
Confidence 999975 1110 0 12356789999994 677888876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|++ . +.++++++|+..++.++||+|++|++|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999999999999999999999999999999999999986 2 4566678999999999999999999999
Q ss_pred EE-EEcCHHHHH
Q 001291 403 IV-YQGPRELVL 413 (1106)
Q Consensus 403 iv-~~G~~~~~~ 413 (1106)
++ +.|+++++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789887654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-55 Score=550.76 Aligned_cols=215 Identities=22% Similarity=0.291 Sum_probs=138.8
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHH---------------------HHHhCCCCCCCC----ceeEEEECCcc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPSLK----VSGRVTYNGHN 218 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~~~~~~~----~~G~V~~~G~~ 218 (1106)
+.++|+|||++|++||+++|+||||||||||+ +++.|...|+.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 788888777521 25677777765
Q ss_pred CCCCCccceEEEEcCCCC-------------------CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCC
Q 001291 219 MDEFVPERTAAYISQHDN-------------------HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDP 279 (1106)
Q Consensus 219 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~ 279 (1106)
.... +++.++||+|... .++.+||+||+.+....... ..+...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~------ 171 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI------ 171 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccc-----------hhhhHH------
Confidence 4322 2345566665432 24678999999874322100 000000
Q ss_pred ChHHHHHhhcchhhhHhHHHHHHHHHcCCccc-ccccccCccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCH
Q 001291 280 DIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDS 356 (1106)
Q Consensus 280 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~ 356 (1106)
.+ ....+.... ..+++.+||++. .|+.+++ |||||||||+|||||+.+|+ +|||||||+|||+
T Consensus 172 -----~~---~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 172 -----AR---LILREIRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred -----HH---HHHHHHHHH-HHHHHHcCCchhhhcCCccc-----CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 00 000001111 235889999864 6787776 99999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 357 STTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 357 ~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
.++.++++.|+++.. . +.+|+.++|+...+ ..||+|++| ++|++++.|+++++.
T Consensus 238 ~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-L-GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-T-TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 999999999999854 3 45666788888765 569999999 899999999988763
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-55 Score=535.29 Aligned_cols=191 Identities=19% Similarity=0.190 Sum_probs=156.2
Q ss_pred EEeeeeeeeeeCC-----eEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001291 870 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFV 944 (1106)
Q Consensus 870 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~ 944 (1106)
.+++++||++.+| |++||+||||||||||+++|+|..++ .+|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC--CCCcC------cc----CCcEEEecccccccCCc
Confidence 4788999999888 78999999999999999999997664 24541 11 23589999987766667
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
||+|++.... +. ... ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hc--ccc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875321 11 111 1234678999999998888774 4699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEec-CCEEEEEecCCCch
Q 001291 1025 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGREVYVGPLGHHS 1085 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~-gG~~~~~G~~~~~~ 1085 (1106)
|||+.++..++++|+++. +.|.|||+||||++ ++...|||+++|+. .|+++..|++.+-.
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~ 558 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLL 558 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHh
Confidence 999999999999999986 45999999999997 47788999999984 27889999887643
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=392.54 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=190.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+.. .+...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 24 mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p--~~G~I~i~G~~i 92 (366)
T 3tui_C 24 MIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQEL 92 (366)
T ss_dssp CEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 48899999887532 1235799999999999999999999999999999999998764 589999999886
Q ss_pred Chh------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 KQE------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~~~------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
... ..++.+||++|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.+..++.+ .+|
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~L 164 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-----SNL 164 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTS
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhC
Confidence 431 23567999999999999999999999987654 2345666778999999999998887764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|+||||||||||||+.++..|+++|+++.+ .|.|||+||||++ .+.+.||++++|++ |++
T Consensus 165 SGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~i 242 (366)
T 3tui_C 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GEL 242 (366)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999975 4999999999997 47788999999985 799
Q ss_pred EEEecCC
Q 001291 1076 VYVGPLG 1082 (1106)
Q Consensus 1076 ~~~G~~~ 1082 (1106)
++.|+..
T Consensus 243 v~~g~~~ 249 (366)
T 3tui_C 243 IEQDTVS 249 (366)
T ss_dssp EECCBHH
T ss_pred EEEcCHH
Confidence 9999865
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=392.25 Aligned_cols=207 Identities=23% Similarity=0.331 Sum_probs=183.7
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDNH 237 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~ 237 (1106)
.+++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 457999999999999999999999999999999999999998 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+.+..+.. ..+...+++++|+.+||++.++..++
T Consensus 117 ~~~~TV~env~~~~~~~~~~----------------------------------~~~~~~~v~~lL~~vgL~~~~~~~~~ 162 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTP----------------------------------KDEVKRRVTELLSLVGLGDKHDSYPS 162 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCTT
T ss_pred CCCCCHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChh
Confidence 99999999999987654321 01123457889999999999998887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+.. +.+|+.++|+..++..+||+|++
T Consensus 163 ~-----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~-g~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 163 N-----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp T-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999986543 55667789999999999999999
Q ss_pred ecCCeEEEEcCHHHHH
Q 001291 398 LSDGQIVYQGPRELVL 413 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1106)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999999885
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=372.68 Aligned_cols=221 Identities=23% Similarity=0.350 Sum_probs=183.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+.. .....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~~ 70 (235)
T 3tif_A 2 VKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (235)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeCCC---------CcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEcc
Confidence 5678888877531 0124699999999999999999999999999999999998764 5899999998764
Q ss_pred hhc------c-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-ccccCCCCCCC
Q 001291 924 QET------F-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QSLVGLPGVNG 995 (1106)
Q Consensus 924 ~~~------~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~~~~~~g~~~ 995 (1106)
... . ++.+||++|++.+++.+||+||+.++...+.......+...+.+.++++.+++.+.. +..+ .+
T Consensus 71 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (235)
T 3tif_A 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (235)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hh
Confidence 311 1 235999999999999999999999876543222334555667788999999998743 5543 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++ |+|||++|||++ +.+.||++++|++ |+
T Consensus 146 LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~ 222 (235)
T 3tif_A 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (235)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 4588999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++..|+..+
T Consensus 223 i~~~~~~~~ 231 (235)
T 3tif_A 223 VEREEKLRG 231 (235)
T ss_dssp EEEEEECC-
T ss_pred EEEEcChhh
Confidence 999988653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=390.40 Aligned_cols=215 Identities=26% Similarity=0.367 Sum_probs=189.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~~~ 68 (381)
T 3rlf_A 4 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 68 (381)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC--CCeEEEECCEECC
Confidence 67888887763 45799999999999999999999999999999999998764 5899999998865
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQ 140 (381)
T 3rlf_A 69 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (381)
T ss_dssp TCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHH
T ss_pred CCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHH
Confidence 42 23467999999999999999999999987654 2345666778999999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+|||||||||+||+..+..+++.|+++.++ |.|||+||||++ ++...||++++|++ |+++..|++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~ 218 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 999999999999999999999999999999999999999755 999999999997 58889999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (381)
T 3rlf_A 219 LE 220 (381)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=388.35 Aligned_cols=207 Identities=23% Similarity=0.362 Sum_probs=181.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC----CCCCc-cceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM----DEFVP-ERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~----~~~~~-~~~~~yv~Q~d~~~~ 239 (1106)
.++|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++ ....+ ++.+|||+|+..++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999998 99999999987 22222 467999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
.+||+||+.|+.+.++... .+...+++++++.+||++.+|+.+++
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~~~- 138 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYPHE- 138 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCGGG-
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCChhh-
Confidence 9999999999865433210 11234578899999999999988876
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+. .+++++.++|+..++..+||+|++|+
T Consensus 139 ----LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 139 ----LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-NGKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 9999999999999999999999999999999999999999888876554 35667778999999999999999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998854
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=389.41 Aligned_cols=207 Identities=25% Similarity=0.355 Sum_probs=184.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+|+|||+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|+..++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999876544 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~p~~----- 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPKA----- 133 (381)
T ss_dssp HHHHTHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTCCGGG-----
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCChhH-----
Confidence 99999997765321 111234578899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++||||||||+||+..+.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45666789999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999999854
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=425.79 Aligned_cols=198 Identities=27% Similarity=0.376 Sum_probs=144.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHH---------HhhhCCCC--C--ceeEE------EEEEcCccCChhc-----
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRKT--G--GYITG------DIRISGYPKKQET----- 926 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~l~g~~~--~--~~~~G------~i~i~g~~~~~~~----- 926 (1106)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + ..+.| .+.+++.+.....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 58999999999999999999999999997 33433211 1 12223 3445544321000
Q ss_pred ---------------------------------------ccceEEEEccCCCCCC-------------------------
Q 001291 927 ---------------------------------------FARISGYCEQNDIHSP------------------------- 942 (1106)
Q Consensus 927 ---------------------------------------~~~~~g~v~q~~~~~~------------------------- 942 (1106)
..+..|++.++..+.+
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012366666655444
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001291 943 -------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP- 1014 (1106)
Q Consensus 943 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p- 1014 (1106)
.+||.|++.|... ......+.++|+.++|.... .+.+ +.+|||||||||+|||||+.+|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~---------~~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKN---------IPSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTT---------CHHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhc---------chhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 3577777765421 11223467889999996532 1222 3469999999999999999876
Q ss_pred --CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCCC
Q 001291 1015 --SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLGH 1083 (1106)
Q Consensus 1015 --~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~~ 1083 (1106)
+||||||||+|||+.+.+.|+++|++++++|.|||+|+||++ +...||+|++|. +||++++.|++.+
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpee 899 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPEE 899 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHHH
Confidence 699999999999999999999999999888999999999985 456799999994 4799999998753
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=378.57 Aligned_cols=217 Identities=24% Similarity=0.366 Sum_probs=185.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+. +..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p--~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP--SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeEEEECCEEC
Confidence 4788999988741 23599999999999999999999999999999999998764 589999999886
Q ss_pred C--h---hcccceEEEEccCCC-CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDI-HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. . ..+++.+||++|++. .++.+||+||+.|+...+ ....++.++.++++++.++|.++.+..+ .+|
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCL 144 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGS
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccC
Confidence 3 2 234567999999873 344689999999986543 2345566678999999999998888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++ ++|+|||++|||++ .+.+.||++++|++ |++
T Consensus 145 SgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i 222 (275)
T 3gfo_A 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRV 222 (275)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999997 56999999999998 47778999999985 799
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
++.|++.+
T Consensus 223 ~~~g~~~~ 230 (275)
T 3gfo_A 223 ILQGNPKE 230 (275)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99998764
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=388.40 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=186.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP--DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367888887763 45799999999999999999999999999999999998764 589999999875
Q ss_pred ----Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 923 ----KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ----~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
.. ...++.+|||+|++.++|.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+||
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LS 140 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYP-----HELS 140 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSC
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 21 233567999999999999999999999986543 2334556678999999999999888774 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|++|||||||||||+..+..+++.|+++. +.|.|||+||||++ ++...|||+++|++ |+++
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~ 218 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRIL 218 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999887764 56999999999997 57889999999985 7999
Q ss_pred EEecCCC
Q 001291 1077 YVGPLGH 1083 (1106)
Q Consensus 1077 ~~G~~~~ 1083 (1106)
..|++.+
T Consensus 219 ~~g~~~e 225 (359)
T 3fvq_A 219 QTASPHE 225 (359)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9998753
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=365.08 Aligned_cols=211 Identities=23% Similarity=0.282 Sum_probs=180.9
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ ++++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 69 (224)
T 2pcj_A 5 LRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP--TEGKVFLEGKEVD 69 (224)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67888887763 35699999999999999999999999999999999998764 5899999998764
Q ss_pred hh------ccc-ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 QE------TFA-RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~------~~~-~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
.. .++ +.+||++|++.+++.+||+||+.++...+. ...+..++.++++++.+++.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (224)
T 2pcj_A 70 YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YEL 141 (224)
T ss_dssp SSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGS
T ss_pred CCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhC
Confidence 21 122 569999999988889999999998764431 233444567899999999998877764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++. + +.||++++|++ |+++
T Consensus 142 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~ 218 (224)
T 2pcj_A 142 SGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVV 218 (224)
T ss_dssp CHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999998779999999999863 4 78999999985 7999
Q ss_pred EEec
Q 001291 1077 YVGP 1080 (1106)
Q Consensus 1077 ~~G~ 1080 (1106)
+.|+
T Consensus 219 ~~g~ 222 (224)
T 2pcj_A 219 GEIT 222 (224)
T ss_dssp EEEE
T ss_pred EEee
Confidence 9885
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=371.11 Aligned_cols=215 Identities=26% Similarity=0.331 Sum_probs=183.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF--DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEES
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEC
Confidence 378899988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred C--h---hcccceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDIHSPFVTVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. . ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.+..+..+ .+|
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 160 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSL 160 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhC
Confidence 3 1 123457999999998888999999999864 222 1233444567899999999988877664 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |+++
T Consensus 161 SgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~ 238 (263)
T 2olj_A 161 SGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYII 238 (263)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999877999999999987 46778999999985 7999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 239 ~~g~~~ 244 (263)
T 2olj_A 239 EEGKPE 244 (263)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988754
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=371.52 Aligned_cols=214 Identities=21% Similarity=0.254 Sum_probs=183.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 7 l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~~ 71 (262)
T 1b0u_A 7 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 71 (262)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcc
Confidence 78889887763 35799999999999999999999999999999999998764 5899999998764
Q ss_pred h----------------hcccceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCCCChHHHHHHHHHHHHHcCCCcc-cc
Q 001291 924 Q----------------ETFARISGYCEQNDIHSPFVTVYESLFYSA-WLRLPPEVNSETRKMFIEEVMELVELKPL-RQ 985 (1106)
Q Consensus 924 ~----------------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-~~ 985 (1106)
. ..+++.+||++|++.+++.+||+||+.|+. ..+ ....+..++.++++++.++|.+. .+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~ 148 (262)
T 1b0u_A 72 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQG 148 (262)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHT
T ss_pred ccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhc
Confidence 1 123457999999998889999999999864 222 12334445678999999999887 77
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 986 ~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
+.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||+
T Consensus 149 ~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~ 222 (262)
T 1b0u_A 149 KYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 222 (262)
T ss_dssp SCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSE
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence 664 469999999999999999999999999999999999999999999999877999999999987 46778999
Q ss_pred EEEEecCCEEEEEecCC
Q 001291 1066 LFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~ 1082 (1106)
+++|++ |++++.|+..
T Consensus 223 v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 223 VIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp EEEEET-TEEEEEECHH
T ss_pred EEEEEC-CEEEEeCCHH
Confidence 999985 7999998764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=371.50 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=177.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-----CccceEEEEcCCC-CCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-----VPERTAAYISQHD-NHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~ 238 (1106)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~ 97 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL 97 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCccccc
Confidence 35999999999999999999999999999999999999998 99999999987421 1235799999985 345
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+||+.|+....+.. ..+...+++.+++.+||++..+..+++
T Consensus 98 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 98 FSASVYQDVSFGAVNMKLP----------------------------------EDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp CSSBHHHHHHHHHHTSCCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred ccCcHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 5899999999987654321 011234577889999999999988876
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+.. +++|+.++|+..++..+||+|++|
T Consensus 144 -----LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l 217 (275)
T 3gfo_A 144 -----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVM 217 (275)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999986334 456666889999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++++.|+++++..
T Consensus 218 ~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 218 KEGRVILQGNPKEVFA 233 (275)
T ss_dssp ETTEEEEEECHHHHTH
T ss_pred ECCEEEEECCHHHHhc
Confidence 9999999999998754
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=367.25 Aligned_cols=215 Identities=23% Similarity=0.310 Sum_probs=184.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 15 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 79 (256)
T 1vpl_A 15 AVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 79 (256)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred eEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 478899988763 35799999999999999999999999999999999998764 589999999876
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++.+||++|++.+++.+||+||+.|....+. ...+..++.++++++.++|.+..++.+ .+|||||
T Consensus 80 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 151 (256)
T 1vpl_A 80 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGM 151 (256)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHH
T ss_pred CccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHH
Confidence 42 2345679999999998888999999988754431 223344566889999999998877764 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |++++.|+
T Consensus 152 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 229 (256)
T 1vpl_A 152 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 229 (256)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecC
Confidence 99999999999999999999999999999999999999999877999999999987 46667999999985 79999887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 230 ~~ 231 (256)
T 1vpl_A 230 VE 231 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=363.43 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=172.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
.++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l 94 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc
Confidence 56999999999999999999999999999999999999998 9999999998876543 2359999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc-ccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC-ADTMV 316 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~v 316 (1106)
++.+||+||+.++......+.. ...+....+..+++.+||.+. .+..+
T Consensus 95 ~~~~tv~enl~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (235)
T 3tif_A 95 IPLLTALENVELPLIFKYRGAM-------------------------------SGEERRKRALECLKMAELEERFANHKP 143 (235)
T ss_dssp CTTSCHHHHHHHHHHTCSSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTTCCG
T ss_pred CCCCcHHHHHHHHHHhhhccCC-------------------------------CHHHHHHHHHHHHHHCCCChhhhhCCh
Confidence 9999999999998654311000 001122356778999999875 47777
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+..+ .+|+.++|+.. +..+||+|+
T Consensus 144 ~~-----LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tvi~vtHd~~-~~~~~d~i~ 216 (235)
T 3tif_A 144 NQ-----LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDG-KTVVVVTHDIN-VARFGERII 216 (235)
T ss_dssp GG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHH-HHTTSSEEE
T ss_pred hh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcC-CEEEEEcCCHH-HHHhCCEEE
Confidence 65 999999999999999999999999999999999999999999999865434 45556778776 458999999
Q ss_pred EecCCeEEEEcCHHHH
Q 001291 397 LLSDGQIVYQGPRELV 412 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1106)
+|++|+++..|+.+++
T Consensus 217 ~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 217 YLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEETTEEEEEEECC--
T ss_pred EEECCEEEEEcChhhh
Confidence 9999999999987764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-41 Score=381.29 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=181.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999866543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. + .+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------K------------------------DEVEKRVVEIARKLLIDNLLDRKPTQ----- 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------H------------------------HHTTHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCchHhcCChhh-----
Confidence 99999986543210 0 11224577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876543 45566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=370.17 Aligned_cols=219 Identities=23% Similarity=0.275 Sum_probs=184.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEC
Confidence 378899988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred Chh----cccceEEEEccCCCCCCCCCHHHHHHHhhhh-cCCC---------CCChHHHHHHHHHHHHHcCCCccccccc
Q 001291 923 KQE----TFARISGYCEQNDIHSPFVTVYESLFYSAWL-RLPP---------EVNSETRKMFIEEVMELVELKPLRQSLV 988 (1106)
Q Consensus 923 ~~~----~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~---------~~~~~~~~~~v~~~l~~~~l~~~~~~~~ 988 (1106)
... ..++.+||++|++.+++.+||+||+.++... +... .......++.++++++.+++.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 431 2345699999999888889999999987532 1110 0122344567889999999988877764
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE
Q 001291 989 GLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1068 (1106)
Q Consensus 989 ~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~ 1068 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||++++
T Consensus 152 -----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~ 225 (257)
T 1g6h_A 152 -----GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 225 (257)
T ss_dssp -----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred -----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEE
Confidence 469999999999999999999999999999999999999999999999877999999999998 46778999999
Q ss_pred EecCCEEEEEecCCC
Q 001291 1069 MKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1069 l~~gG~~~~~G~~~~ 1083 (1106)
|++ |++++.|+..+
T Consensus 226 l~~-G~i~~~g~~~~ 239 (257)
T 1g6h_A 226 MFN-GQIIAEGRGEE 239 (257)
T ss_dssp EET-TEEEEEEESHH
T ss_pred EEC-CEEEEEeCHHH
Confidence 985 78999988643
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=411.91 Aligned_cols=196 Identities=29% Similarity=0.356 Sum_probs=148.0
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh-C--------C-CCCc---eeEE------EEEEcCccCChhc-----
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G--------R-KTGG---YITG------DIRISGYPKKQET----- 926 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g--------~-~~~~---~~~G------~i~i~g~~~~~~~----- 926 (1106)
.|+||||+|++|+++||+|+||||||||+++|+ | . ..++ .+.| .|.+++.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 589999999999999999999999999999864 1 0 1122 2344 4788887652100
Q ss_pred -----------------ccceEEEEccCCCCC----------------------C-------------------------
Q 001291 927 -----------------FARISGYCEQNDIHS----------------------P------------------------- 942 (1106)
Q Consensus 927 -----------------~~~~~g~v~q~~~~~----------------------~------------------------- 942 (1106)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 013357776643211 0
Q ss_pred -------CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 943 -------FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 943 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
.+|+.|++.|... . . ....+.++++.++|.. ..++.+ .+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~--~~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-H--HHHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-h--hHHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 1 1 1223568899999986 445543 469999999999999999875
Q ss_pred ---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1015 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1015 ---~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
+||||||||+|||+.+...++++|++++++|.|||+||||++ ..+.||++++|. ++|++++.|++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999986 347899999995 478999999864
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=363.64 Aligned_cols=214 Identities=23% Similarity=0.321 Sum_probs=180.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 378889988763 35699999999999999999999999999999999998764 589999999876
Q ss_pred Chh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCC
Q 001291 923 KQE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVE-LKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 923 ~~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-l~~~~~~~~~~~g~~~LS 997 (1106)
... . .++.+||++|++.+++.+||+||+.++.... ...+..++.++++++.++ +.+..++.+ .+||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS 141 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCCh-----hhCC
Confidence 431 1 2345999999998888999999999864211 122334556788999995 877766653 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVY 1077 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~ 1077 (1106)
|||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ ++...||++++|++ |++++
T Consensus 142 gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~ 219 (240)
T 1ji0_A 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999878999999999986 47788999999985 79999
Q ss_pred EecCC
Q 001291 1078 VGPLG 1082 (1106)
Q Consensus 1078 ~G~~~ 1082 (1106)
.|+..
T Consensus 220 ~g~~~ 224 (240)
T 1ji0_A 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred EcCHH
Confidence 88764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=363.82 Aligned_cols=206 Identities=23% Similarity=0.351 Sum_probs=177.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC--CCC---ccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD--EFV---PERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 239 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999998 999999999874 111 1356999999998999
Q ss_pred CCCHHHHHHHHH-HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 240 EMTVRETLAFAA-RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
.+||+||+.|+. +..+.. . .+....++.+++.+||++..+..+++
T Consensus 114 ~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP----------R------------------------EKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC----------H------------------------HHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCchHhcCChhh
Confidence 999999999964 332210 0 01123467789999999988888776
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|
T Consensus 160 -----LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -----LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-E-GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998854 3 556677899999999999999999
Q ss_pred cCCeEEEEcCHHHHHH
Q 001291 399 SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1106)
++|++++.|+++++..
T Consensus 233 ~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFD 248 (263)
T ss_dssp ETTEEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999988753
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=381.16 Aligned_cols=217 Identities=24% Similarity=0.377 Sum_probs=187.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 14 ~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP--TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 578899887762 123589999999999999999999999999999999998764 589999999876
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHH
Confidence 43 223567999999999999999999999986543 2334555678999999999998888764 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|+
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~ 229 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGT 229 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998754 999999999987 57788999999985 79999998
Q ss_pred CCC
Q 001291 1081 LGH 1083 (1106)
Q Consensus 1081 ~~~ 1083 (1106)
+.+
T Consensus 230 ~~~ 232 (355)
T 1z47_A 230 PEE 232 (355)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=366.98 Aligned_cols=204 Identities=26% Similarity=0.348 Sum_probs=179.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999998 9999999999876543 35699999998888899
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+...... .+....++.+++.+||.+..+..+++
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~--- 141 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDYRV--- 141 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBGGG---
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCccc---
Confidence 999999987542210 01123467789999999999888765
Q ss_pred CCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+|||||+. +|++|||||||+|||+.++.++++.|+++.+ .++.+|+.++|+..++..+||+|
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~-~~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTR-QEPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHH-HSSEEEEEECSCHHHHHHHCSEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-cCCCEEEEEEcCHHHHHHhCCEE
Confidence 99999999999999999 9999999999999999999999999998865 45667788999999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999999874
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=379.28 Aligned_cols=207 Identities=25% Similarity=0.387 Sum_probs=182.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 45999999999999999999999999999999999999998 9999999998865433 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..|..+++
T Consensus 105 ~eni~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~r~~~~----- 145 (355)
T 1z47_A 105 YDNVSFGLREKRVP----------------------------------KDEMDARVRELLRFMRLESYANRFPHE----- 145 (355)
T ss_dssp HHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGGG-----
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCCccc-----
Confidence 99999987654321 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45566689999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 225 ~~~g~~~~l~~ 235 (355)
T 1z47_A 225 EQFGTPEEVYE 235 (355)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=381.18 Aligned_cols=215 Identities=25% Similarity=0.344 Sum_probs=184.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (359)
T 2yyz_A 4 IRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP--TSGEIYFDDVLVN 68 (359)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC--CccEEEECCEECC
Confidence 67888887763 35799999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~Q 140 (359)
T 2yyz_A 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQ 140 (359)
T ss_dssp TSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975432 1223334567899999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 218 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTP 218 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998754 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (359)
T 2yyz_A 219 DE 220 (359)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=380.95 Aligned_cols=215 Identities=26% Similarity=0.371 Sum_probs=186.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +..+|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 68 (362)
T 2it1_A 4 IKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP--TSGKIYFDEKDVT 68 (362)
T ss_dssp EEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67788887653 34699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 69 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 140 (362)
T 2it1_A 69 ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQ 140 (362)
T ss_dssp TSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHH
T ss_pred cCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHH
Confidence 32 234679999999999999999999999865432 234555677899999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 218 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTP 218 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998654 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 219 ~~ 220 (362)
T 2it1_A 219 DE 220 (362)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-41 Score=368.40 Aligned_cols=224 Identities=24% Similarity=0.329 Sum_probs=189.0
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++|.++ ++++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP--SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC--SSCEEEETTEET
T ss_pred eEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 478889988763 45799999999999999999999999999999999998764 489999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE 999 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G 999 (1106)
.. ...++.+||++|++.+.+.+||+||+.++.... .....++.++++++.+++.++.++.+ .+||||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 145 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDY-----RVLSGG 145 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHH
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 43 234566899999998888899999999875432 12234556889999999998887764 469999
Q ss_pred HHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1000 QRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1000 qrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
|||||+|||||+. +|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++
T Consensus 146 q~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~- 223 (266)
T 4g1u_C 146 EQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ- 223 (266)
T ss_dssp HHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-
T ss_pred HHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-
Confidence 9999999999999 99999999999999999999999999999765 579999999997 47788999999985
Q ss_pred CEEEEEecCCCc--hhHHHHHHH
Q 001291 1073 GREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1073 G~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
|++++.|+..+. ...+.++|.
T Consensus 224 G~i~~~g~~~~~~~~~~l~~~~~ 246 (266)
T 4g1u_C 224 GKLVACGTPEEVLNAETLTQWYQ 246 (266)
T ss_dssp TEEEEEECHHHHCCHHHHHHHCC
T ss_pred CEEEEEcCHHHHhCcHHHHHHhC
Confidence 799999987642 334556664
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=357.50 Aligned_cols=200 Identities=28% Similarity=0.377 Sum_probs=172.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999998 9999999998865432 1569999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+....+.. . .+....++.+++.+||.+..+..++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKP----------K------------------------KEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------H------------------------HHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred CCCCCHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999999976543210 0 0112346778999999999888887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++ ++||+|++
T Consensus 140 ~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 140 E-----LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG--GTSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp G-----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHH-TTSSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHH-HhCCEEEE
Confidence 6 9999999999999999999999999999999999999999999988653 45566678887776 89999999
Q ss_pred ecCCeEEEEcCH
Q 001291 398 LSDGQIVYQGPR 409 (1106)
Q Consensus 398 L~~G~iv~~G~~ 409 (1106)
|++|+++++|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-40 Score=379.83 Aligned_cols=207 Identities=27% Similarity=0.381 Sum_probs=181.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC------CCc-cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE------FVP-ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 237 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++.. ..+ ++.+|||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999998 9999999988754 322 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++++||+||+.|+.+..+.. ..+...+++++++.+||++..+..++
T Consensus 93 ~~~ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~ 138 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKPR 138 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCCCCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHCCCchHhcCCcc
Confidence 99999999999987654321 01122457788999999999998887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++
T Consensus 139 ~-----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred c-----CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEECCCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999876543 45566688999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|+++..|+++++..
T Consensus 213 l~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999998853
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=379.48 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=182.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999865543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 93 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 133 (362)
T 2it1_A 93 YKNIAFPLELRKAP----------------------------------REEIDKKVREVAKMLHIDKLLNRYPWQ----- 133 (362)
T ss_dssp HHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhhCChhh-----
Confidence 99999987654321 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998865434 5566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 213 ~~~g~~~~~~~ 223 (362)
T 2it1_A 213 LQVGTPDEVYY 223 (362)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=381.27 Aligned_cols=215 Identities=26% Similarity=0.337 Sum_probs=186.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~~~ 68 (372)
T 1g29_1 4 VRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVA 68 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC--CccEEEECCEECc
Confidence 67888887763 35799999999999999999999999999999999998764 5899999998753
Q ss_pred h-------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 924 Q-------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~-------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
. ...++.+|||+|++.+++.+||+||+.|+...+. ...++.+++++++++.++|.++.++.+ .+|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~L 140 (372)
T 1g29_1 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----REL 140 (372)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGS
T ss_pred cccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccC
Confidence 2 1234679999999999999999999999865442 234455677899999999998888764 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |++
T Consensus 141 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i 218 (372)
T 1g29_1 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVL 218 (372)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEE
Confidence 999999999999999999999999999999999999999999998754 999999999987 57789999999985 799
Q ss_pred EEEecCCC
Q 001291 1076 VYVGPLGH 1083 (1106)
Q Consensus 1076 ~~~G~~~~ 1083 (1106)
+..|++.+
T Consensus 219 ~~~g~~~~ 226 (372)
T 1g29_1 219 QQVGSPDE 226 (372)
T ss_dssp EEEECHHH
T ss_pred EEeCCHHH
Confidence 99998653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=365.37 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=176.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC----------CC------ccceE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE----------FV------PERTA 228 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----------~~------~~~~~ 228 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 36999999999999999999999999999999999999998 9999999988751 11 13569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHH-HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAA-RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1106)
+||+|++.+++.+||+||+.|+. +..+.. . .+....++.+++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K------------------------HDARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC----------H------------------------HHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC----------H------------------------HHHHHHHHHHHHHcC
Confidence 99999998999999999999964 322210 0 011234677899999
Q ss_pred Cccc-ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 308 LDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 308 L~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
|++. .+..+++ |||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+ . +++|+.++|+..
T Consensus 142 L~~~~~~~~~~~-----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~-g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-T-TCCEEEECSCHH
T ss_pred CCchhhcCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHH
Confidence 9988 8888876 999999999999999999999999999999999999999999998864 3 455666889999
Q ss_pred HHHhhcCeEEEecCCeEEEEcCHHHHHH
Q 001291 387 ETYNLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 414 (1106)
++..+||+|++|++|++++.|+++++..
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 242 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFG 242 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999999999999988753
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=381.01 Aligned_cols=207 Identities=24% Similarity=0.356 Sum_probs=175.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999998 9999999999866543 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|+.+..+.. ..+...+++.+++.+||++..+..+++
T Consensus 101 ~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 141 (372)
T 1v43_A 101 YENIAFPLKIKKFP----------------------------------KDEIDKRVRWAAELLQIEELLNRYPAQ----- 141 (372)
T ss_dssp HHHHHTTCC--CCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCChhh-----
Confidence 99999975433210 011234577899999999999988876
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886543 45566688999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+..|+++++..
T Consensus 221 ~~~g~~~~l~~ 231 (372)
T 1v43_A 221 LQIGSPTEVYL 231 (372)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999998853
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=380.81 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=180.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +..+|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+..
T Consensus 12 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~i~ 76 (372)
T 1v43_A 12 VKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDVT 76 (372)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECC
Confidence 78889887763 35699999999999999999999999999999999998764 5899999998764
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+|||||||
T Consensus 77 ~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~Q 148 (372)
T 1v43_A 77 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQ 148 (372)
T ss_dssp TSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHH
T ss_pred CCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999975433 2334555677999999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++||||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~ 226 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 226 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998755 999999999987 57789999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 227 ~~ 228 (372)
T 1v43_A 227 TE 228 (372)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=359.48 Aligned_cols=206 Identities=26% Similarity=0.312 Sum_probs=177.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875421 1357999999998999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+....+.. . .+....++.+++.+||++..++.+++
T Consensus 105 v~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~~~---- 146 (256)
T 1vpl_A 105 GIEYLRFVAGFYASS----------S------------------------SEIEEMVERATEIAGLGEKIKDRVST---- 146 (256)
T ss_dssp HHHHHHHHHHHHCCC----------H------------------------HHHHHHHHHHHHHHCCGGGGGSBGGG----
T ss_pred HHHHHHHHHHHcCCC----------h------------------------HHHHHHHHHHHHHCCCchHhcCChhh----
Confidence 999999975433210 0 01123467789999999998888766
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.. . +++|+.++|+..++..+||+|++|++|+
T Consensus 147 -LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 147 -YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp -CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-C-CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 3 4566668899999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999988754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=380.65 Aligned_cols=215 Identities=27% Similarity=0.377 Sum_probs=185.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceE--EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLV--LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
+.++|+++.++ +.. +|+||||+|++||+++|+|||||||||||++|+|..++ .+|+|.++|.+
T Consensus 4 l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~i~g~~ 68 (353)
T 1oxx_K 4 IIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRL 68 (353)
T ss_dssp EEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEE
T ss_pred EEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEE
Confidence 67888887763 234 99999999999999999999999999999999998764 58999999987
Q ss_pred CCh------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 922 KKQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 922 ~~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
... ...++.+|||+|++.+++.+||+||+.|+...+ ....++.+++++++++.++|.++.++.+ .+
T Consensus 69 i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~ 140 (353)
T 1oxx_K 69 VASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RE 140 (353)
T ss_dssp EEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred CcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 532 224567999999999999999999999976433 2334555677899999999998888764 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||||||+|||||+.+|++|||||||||||+.++..+++.|+++.++ |.|||++|||++ ++...||++++|++ |+
T Consensus 141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~ 218 (353)
T 1oxx_K 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GK 218 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998654 999999999987 57789999999985 79
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
++..|++.+
T Consensus 219 i~~~g~~~~ 227 (353)
T 1oxx_K 219 LVQVGKPED 227 (353)
T ss_dssp EEEEECHHH
T ss_pred EEEEcCHHH
Confidence 999998653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=378.94 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=179.7
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC-----CC-ccceEEEEcCCCCCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE-----FV-PERTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 240 (1106)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999998 9999999988743 22 24689999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+.+..+.. ..+...+++++++.+||++..+..+++
T Consensus 97 ltv~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~L~~~~~~~~~~-- 140 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPRE-- 140 (353)
T ss_dssp SCHHHHHHGGGTTSSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGGG--
T ss_pred CCHHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCCchHhcCChhh--
Confidence 99999999986543210 011234577899999999999988876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++
T Consensus 141 ---LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 141 ---LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp ---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999886543 45566688999999999999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+++..|+++++..
T Consensus 217 G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 217 GKLVQVGKPEDLYD 230 (353)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEEcCHHHHHh
Confidence 99999999998853
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=376.86 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=178.9
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|+++++|++++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999998 9999999998865433 467999999999999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+.+..+... . .+++++++.+||++..|..+++ ||
T Consensus 92 nl~~~~~~~~~~~------------------------------------~-~~v~~~l~~~~L~~~~~~~~~~-----LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD------------------------------------P-KRVLDTARDLKIEHLLDRNPLT-----LS 129 (348)
T ss_dssp HHHHHHHHHCCCC------------------------------------H-HHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHcCCCH------------------------------------H-HHHHHHHHHcCCchHhcCChhh-----CC
Confidence 9999865432100 0 2467789999999999988876 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~-g~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKN-KLTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999886543 4566668899999999999999999999999
Q ss_pred EcCHHHHH
Q 001291 406 QGPRELVL 413 (1106)
Q Consensus 406 ~G~~~~~~ 413 (1106)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99999884
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=406.84 Aligned_cols=107 Identities=27% Similarity=0.347 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 001291 969 MFIEEVMELVELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044 (1106)
Q Consensus 969 ~~v~~~l~~~~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~---p~illLDEPTsgLD~~~~~~i~~~l~~~~~~ 1044 (1106)
..+.++|+.++|... .++. +.+|||||||||+||++|+.+ |+||||||||+|||+.+...++++|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 357899999999863 3443 246999999999999999996 6999999999999999999999999999888
Q ss_pred CceEEEEecCccHHHHHhcCeEEEEe-----cCCEEEEEecCC
Q 001291 1045 GRTVVCTIHQPSIDIFEAFDELFLMK-----RGGREVYVGPLG 1082 (1106)
Q Consensus 1045 g~tvi~~tH~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1082 (1106)
|.|||+||||++ .+ +.||++++|. ++|++++.|+..
T Consensus 783 G~tVIvisHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~ 823 (842)
T 2vf7_A 783 GNTVIAVEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPA 823 (842)
T ss_dssp TCEEEEECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHH
T ss_pred CCEEEEEcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHH
Confidence 999999999986 35 7899999995 478999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-40 Score=362.64 Aligned_cols=216 Identities=27% Similarity=0.360 Sum_probs=175.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|||+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999998 9999999998865432 3469999999988999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.|+......+. ....-. .. .. ....+....++.+++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~~----~~~~~~----~~-~~------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 153 (257)
T 1g6h_A 97 MTVLENLLIGEICPGESP----LNSLFY----KK-WI------------PKEEEMVEKAFKILEFLKLSHLYDRKAGE-- 153 (257)
T ss_dssp SBHHHHHHGGGTSTTSCH----HHHHHH----CS-SC------------CCCHHHHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred CcHHHHHHHHHhhhccCc----cccccc----cc-cc------------CCHHHHHHHHHHHHHHcCCchhhCCCchh--
Confidence 999999998643200000 000000 00 00 00011223567889999999999888876
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|++
T Consensus 154 ---LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 154 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-K-GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998864 3 45666688999999999999999999
Q ss_pred CeEEEEcCHHH
Q 001291 401 GQIVYQGPREL 411 (1106)
Q Consensus 401 G~iv~~G~~~~ 411 (1106)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999888
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=355.85 Aligned_cols=204 Identities=24% Similarity=0.359 Sum_probs=173.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999998 9999999998865432 2359999999989999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-CcccccccccCc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-LDICADTMVGDE 319 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 319 (1106)
+||+||+.|+.... .. . .+....++.+++.++ |++..++.+++
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~~~- 139 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLGGT- 139 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSSS-
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCChhh-
Confidence 99999999863111 00 0 011234566788894 98888877765
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+ . +++|+.++|+..++..+||+|++|+
T Consensus 140 ----LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 140 ----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998764 3 4556667889999999999999999
Q ss_pred CCeEEEEcCHHHHH
Q 001291 400 DGQIVYQGPRELVL 413 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1106)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999988774
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=375.38 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=181.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +. +|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p--~~G~I~~~g~~i~ 65 (348)
T 3d31_A 2 IEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (348)
T ss_dssp EEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC--CCcEEEECCEECC
Confidence 45677776652 34 99999999999999999999999999999999998764 5899999998764
Q ss_pred h-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 Q-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ...++.+|||+|++.+++.+||+||+.|+...+.. ... ++++++++.++|.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 134 (348)
T 3d31_A 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (348)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHH
Confidence 3 22356799999999999999999999998654421 111 56889999999998888764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||||||+.++..+++.|+++.+ .|.|||++|||++ ++...||++++|++ |+++..|++
T Consensus 135 RvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~ 212 (348)
T 3d31_A 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (348)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999999999999999865 4999999999987 57789999999975 789999976
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 213 ~ 213 (348)
T 3d31_A 213 E 213 (348)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=358.28 Aligned_cols=219 Identities=27% Similarity=0.287 Sum_probs=174.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|++++|+ ++.+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 4 l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~ 70 (250)
T 2d2e_A 4 LEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENIL 70 (250)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECT
T ss_pred EEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECC
Confidence 67888887763 35699999999999999999999999999999999997211256899999998764
Q ss_pred hh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CC
Q 001291 924 QE---TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-KPLRQSLVGLPGVNG-LS 997 (1106)
Q Consensus 924 ~~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l-~~~~~~~~~~~g~~~-LS 997 (1106)
.. .. ++.++|++|++.+++.+||+||+.++...............+.++++++.+++ .+..++.+ .+ ||
T Consensus 71 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LS 145 (250)
T 2d2e_A 71 ELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFS 145 (250)
T ss_dssp TSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC--
T ss_pred CCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCC
Confidence 31 11 33589999999998999999999886532111111223345668899999999 47777653 35 99
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++ |+++
T Consensus 146 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~ 223 (250)
T 2d2e_A 146 GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVV 223 (250)
T ss_dssp --HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999987679999999999973 5555 599999985 7999
Q ss_pred EEecCC
Q 001291 1077 YVGPLG 1082 (1106)
Q Consensus 1077 ~~G~~~ 1082 (1106)
+.|+..
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 998754
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=361.40 Aligned_cols=218 Identities=23% Similarity=0.319 Sum_probs=179.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+... ...+++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~~~~ 72 (266)
T 2yz2_A 3 IEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP--TSGDVLYDGERKK 72 (266)
T ss_dssp EEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEECCEECc
Confidence 57788887764100 0015799999999999999999999999999999999998764 5899999998765
Q ss_pred hhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHH
Q 001291 924 QETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~g~~~LS~Gq 1000 (1106)
...+++.+||++|++ ..++.+||+||+.|+.... ...+..++.++++++.++|. +..++.+ .+|||||
T Consensus 73 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq 143 (266)
T 2yz2_A 73 GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF----YPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGE 143 (266)
T ss_dssp HHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT----CTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHH
T ss_pred hHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc----CCHHHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHH
Confidence 433456799999985 4556789999998864322 11122234578999999998 7777664 4699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~ 221 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999777999999999997 36667999999985 78998886
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 222 ~~ 223 (266)
T 2yz2_A 222 RM 223 (266)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=355.58 Aligned_cols=209 Identities=22% Similarity=0.317 Sum_probs=177.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ + +|+||||+|++ |++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 63 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADIT 63 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 46778877662 2 49999999999 99999999999999999999998764 4899999998764
Q ss_pred h-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 Q-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ...++.+||++|++.+++.+||+||+.|+...+ .....++.++++++.+++.+..++.+ .+|||||||
T Consensus 64 ~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkq 133 (240)
T 2onk_A 64 PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQ 133 (240)
T ss_dssp TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHH
T ss_pred cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHH
Confidence 3 223467999999998889999999998864321 11222566889999999988877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||++ ++...||++++|++ |++++.|+.
T Consensus 134 Rv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 211 (240)
T 2onk_A 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999998654 999999999987 47788999999985 799998875
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 212 ~ 212 (240)
T 2onk_A 212 K 212 (240)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=364.31 Aligned_cols=229 Identities=22% Similarity=0.353 Sum_probs=183.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 21 ~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA--TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTBCC
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 588999988763 35799999999999999999999999999999999998764 489999999876
Q ss_pred C--h---hcccceEEEEccCCCCC--CCCCHHHHHHHhhhhcCC-CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 001291 923 K--Q---ETFARISGYCEQNDIHS--PFVTVYESLFYSAWLRLP-PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 923 ~--~---~~~~~~~g~v~q~~~~~--~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
. . ..+++.+||++|++... +.+||+||+.|+...... .....+..++.++++++.+++.+..++.+ .
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 160 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----G 160 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 4 2 23456799999987543 346999999886321100 01112334566889999999988877764 4
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceE--EEEecCccHHHHHhcCeEEEEecC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV--VCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tv--i~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|| |++|||++ ++...||++++|++
T Consensus 161 ~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~- 238 (279)
T 2ihy_A 161 YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD- 238 (279)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 699999999999999999999999999999999999999999999997669999 99999987 46678999999985
Q ss_pred CEEEEEecCCCc--hhHHHHHHH
Q 001291 1073 GREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1073 G~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
|++++.|+..+. ...+.++|.
T Consensus 239 G~i~~~g~~~~~~~~~~~~~~~~ 261 (279)
T 2ihy_A 239 GQSIQQGAVEDILTSENMSRFFQ 261 (279)
T ss_dssp TEEEEEEEHHHHCSHHHHHHHHT
T ss_pred CEEEEECCHHHHhccHHHHHHhC
Confidence 799999876542 233445553
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=367.74 Aligned_cols=213 Identities=26% Similarity=0.327 Sum_probs=175.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|.|+. +.++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 52 ~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~G~~ 117 (306)
T 3nh6_A 52 GRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI--SSGCIRIDGQD 117 (306)
T ss_dssp CCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCcEEEECCEE
Confidence 46899999998741 34699999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~ 991 (1106)
+.. ..+++.+|||+|++.+++ .||+||+.|+... .. .+.++++++.+++.+..+. .++..
T Consensus 118 i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~ 187 (306)
T 3nh6_A 118 ISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AG----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER 187 (306)
T ss_dssp TTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CC----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT
T ss_pred cccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CC----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC
Confidence 754 335667999999998874 6999999886421 11 2345677777777654432 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++. + ..||+|++|++
T Consensus 188 g-~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~-~-~~aD~i~vl~~ 263 (306)
T 3nh6_A 188 G-LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-V-VNADQILVIKD 263 (306)
T ss_dssp S-BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHHH-H-HTCSEEEEEET
T ss_pred c-CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChHH-H-HcCCEEEEEEC
Confidence 2 4699999999999999999999999999999999999999999999986 47999999999973 4 45999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 264 -G~iv~~G~~~e 274 (306)
T 3nh6_A 264 -GCIVERGRHEA 274 (306)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998653
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=351.91 Aligned_cols=202 Identities=20% Similarity=0.302 Sum_probs=174.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+|+|+|+++++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999998 999999999875432 2467999999998999999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+....+. .. ....++.+++.+||++..+..+++ ||
T Consensus 90 nl~~~~~~~~~----------~~--------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 128 (240)
T 2onk_A 90 NIAYGLRNVER----------VE--------------------------RDRRVREMAEKLGIAHLLDRKPAR-----LS 128 (240)
T ss_dssp HHHTTCTTSCH----------HH--------------------------HHHHHHHHHHTTTCTTTTTCCGGG-----SC
T ss_pred HHHHHHHHcCC----------ch--------------------------HHHHHHHHHHHcCCHHHhcCChhh-----CC
Confidence 99986432210 00 023467789999999988888876 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+..+ ++|+.++|+..++..+||+|++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g-~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHT-CCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998765334 445557889999999999999999999999
Q ss_pred EcCHHHHHH
Q 001291 406 QGPRELVLE 414 (1106)
Q Consensus 406 ~G~~~~~~~ 414 (1106)
.|+++++.+
T Consensus 208 ~g~~~~~~~ 216 (240)
T 2onk_A 208 KGKLKELFS 216 (240)
T ss_dssp EECHHHHHH
T ss_pred ECCHHHHHh
Confidence 999988753
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-39 Score=354.84 Aligned_cols=221 Identities=26% Similarity=0.291 Sum_probs=179.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+ ++++|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 488999988763 3579999999999999999999999999999999999742235689999999876
Q ss_pred Chh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhh-hc---CCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 001291 923 KQE---TF-ARISGYCEQNDIHSPFVTVYESLFYSAW-LR---LPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGV 993 (1106)
Q Consensus 923 ~~~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~-~~---~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~ 993 (1106)
... .. ++.+||++|++.+++.+|+.|++.+... .+ .......+..++.++++++.+++. ...+..+.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 421 11 2348999999999999999999977531 11 111122334456788999999996 45665532
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHh-cCeEEEEecC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELFLMKRG 1072 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~-~D~v~~l~~g 1072 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~- 240 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ- 240 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-
Confidence 1499999999999999999999999999999999999999999999987679999999999873 4444 899999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 241 G~i~~~g~~~ 250 (267)
T 2zu0_C 241 GRIVKSGDFT 250 (267)
T ss_dssp TEEEEEECTT
T ss_pred CEEEEEcCHH
Confidence 7999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=349.14 Aligned_cols=208 Identities=22% Similarity=0.339 Sum_probs=174.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++. ++.+|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.+
T Consensus 5 l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~------ 64 (253)
T 2nq2_C 5 LSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKIEV------ 64 (253)
T ss_dssp EEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC--SEEEEEE------
T ss_pred EEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEE------
Confidence 678888877630 24699999999999999999999999999999999998764 4899872
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC-CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP-EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
++.+||++|++.+++.+||+||+.|+....... .......++.++++++.+++.+..++.+ .+|||||||
T Consensus 65 ----~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~q 135 (253)
T 2nq2_C 65 ----YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQ 135 (253)
T ss_dssp ----CSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHH
T ss_pred ----eccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHH
Confidence 356899999998888899999999875322110 0112334566889999999998877764 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+.
T Consensus 136 rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~ 212 (253)
T 2nq2_C 136 LILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGET 212 (253)
T ss_dssp HHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCH
Confidence 999999999999999999999999999999999999999876 999999999987 46688999999986 67 888876
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 213 ~~ 214 (253)
T 2nq2_C 213 RN 214 (253)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=360.81 Aligned_cols=201 Identities=24% Similarity=0.361 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+| ..
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf-~~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLF-ND 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCC-SE
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccC-cc
Confidence 46999999999999999999999999999999999999998 9999999999876543 46799999998777 56
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-------CCcccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-------GLDICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 314 (1106)
||+|||.|+..... .+ .++.+++.. .++...+|
T Consensus 143 Tv~eNi~~~~~~~~----~~------------------------------------~~~~~~~~~~l~~~i~~lp~gl~t 182 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----ND------------------------------------EVEAAAQAAGIHDAIMAFPEGYRT 182 (306)
T ss_dssp EHHHHHHTTSTTCC----HH------------------------------------HHHHHHHHHTCHHHHHHSTTGGGC
T ss_pred cHHHHHHhhcccCC----HH------------------------------------HHHHHHHHhCcHHHHHhccchhhh
Confidence 99999998643210 00 011112222 23345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..|||||||||+|||||+.+|+||||||||||||+.+...|.+.|+++. .++ ++++++|....+.. ||+
T Consensus 183 ~~~~-~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~--~~~-Tvi~itH~l~~~~~-aD~ 257 (306)
T 3nh6_A 183 QVGE-RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC--ANR-TTIVVAHRLSTVVN-ADQ 257 (306)
T ss_dssp EEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH--TTS-EEEEECCSHHHHHT-CSE
T ss_pred HhcC-CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCC-EEEEEEcChHHHHc-CCE
Confidence 8875 455699999999999999999999999999999999999999999999864 244 45557888888765 999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+|++.|+++++..
T Consensus 258 i~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 258 ILVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999999875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=349.79 Aligned_cols=195 Identities=23% Similarity=0.358 Sum_probs=169.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+|+|+||+|++||+++|+||||||||||+++|+|..++ . |+|.++|.+... ..+++.+||++|++.+++.+||+
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p--~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 91 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 91 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHH
Confidence 79999999999999999999999999999999998763 5 999999987632 23456799999999888889999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------eEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS-------IIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~-------illLD 1020 (1106)
||+.++.... .. ++.++++++.+++.+..++.+ .+||||||||++|||||+.+|+ +||||
T Consensus 92 e~l~~~~~~~----~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLD 158 (249)
T 2qi9_C 92 HYLTLHQHDK----TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158 (249)
T ss_dssp HHHHTTCSST----TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHhhccC----Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEE
Confidence 9998753111 11 455789999999988877664 4699999999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
|||+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+..+
T Consensus 159 EPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 219 (249)
T 2qi9_C 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRREE 219 (249)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHHH
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHHH
Confidence 999999999999999999999777999999999987 46688999999985 78999887653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=350.36 Aligned_cols=213 Identities=25% Similarity=0.382 Sum_probs=174.6
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|+++.|+. +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~I~i~g~~ 72 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHD 72 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 36889999987731 134699999999999999999999999999999999998764 48999999987
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~ 991 (1106)
... ..+++.+||++|++.+++ .||+||+.|+.. ... ++.++++++.+++.+..+... +.+
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~ 142 (247)
T 2ff7_A 73 LALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQ 142 (247)
T ss_dssp TTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTT
T ss_pred hhhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCC
Confidence 643 234567999999998776 699999987521 111 234677888888876654432 111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++
T Consensus 143 -~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~ 218 (247)
T 2ff7_A 143 -GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK 218 (247)
T ss_dssp -TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 69999999999873 4 56999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 219 -G~i~~~g~~~ 228 (247)
T 2ff7_A 219 -GKIVEQGKHK 228 (247)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 7899988753
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-39 Score=353.88 Aligned_cols=205 Identities=28% Similarity=0.417 Sum_probs=174.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC-CCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD-NHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999998 999999998875322246799999985 56778999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc--ccccccccCccC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD--ICADTMVGDEMR 321 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 321 (1106)
+||+.|+.... . +.. +....++.+++.+||+ +..++.+++
T Consensus 97 ~enl~~~~~~~-~--------------------~~~--------------~~~~~~~~~l~~~gl~~~~~~~~~~~~--- 138 (266)
T 2yz2_A 97 FDEVAFAVKNF-Y--------------------PDR--------------DPVPLVKKAMEFVGLDFDSFKDRVPFF--- 138 (266)
T ss_dssp HHHHHHTTTTT-C--------------------TTS--------------CSHHHHHHHHHHTTCCHHHHTTCCGGG---
T ss_pred HHHHHHHHHhc-C--------------------CHH--------------HHHHHHHHHHHHcCcCCcccccCChhh---
Confidence 99999864211 0 000 0123467789999999 888888765
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++..+||+|++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999987543 456666888888898999999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
++++.|+++++..
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999988764
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=354.74 Aligned_cols=215 Identities=22% Similarity=0.287 Sum_probs=172.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||++.|+.. +++.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~i 83 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP--TGGKVLLDGEPL 83 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 48899999877420 124589999999999999999999999999999999998764 489999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHH-----HHHHHHHHHHHc--CCCcccccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSET-----RKMFIEEVMELV--ELKPLRQSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~~--~l~~~~~~~~~~~g 992 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+.... ...+. ....++++++.+ ++....+..+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~----~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~---- 154 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT----PTMEEITAVAMESGAHDFISGFPQGYDTEVGETG---- 154 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC----CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG----
T ss_pred ccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC----ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc----
Confidence 43 223557999999998876 59999998863211 11011 112345667777 6666655553
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|+|||++|||++. + +.||++++|++
T Consensus 155 -~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~-~~~d~v~~l~~ 231 (271)
T 2ixe_A 155 -NQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-A-ERAHHILFLKE 231 (271)
T ss_dssp -TTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-H-TTCSEEEEEET
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-H-HhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 48999999999863 4 56999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 232 -G~i~~~g~~~ 241 (271)
T 2ixe_A 232 -GSVCEQGTHL 241 (271)
T ss_dssp -TEEEEEECHH
T ss_pred -CEEEEECCHH
Confidence 7899988754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=345.09 Aligned_cols=201 Identities=20% Similarity=0.267 Sum_probs=169.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+.++|+++.++ + ++|+||||+|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 10 ~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p--~~G~I~~~g~~~ 73 (214)
T 1sgw_A 10 KLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 73 (214)
T ss_dssp EEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEh
Confidence 478889887763 3 699999999999999999999999999999999998764 589999999876
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
. ..++.+||++|++.+++.+||+||+.++...+.. .. . ++.++++++.+++.+. +..+ .+|||||||
T Consensus 74 ~--~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~---~~-~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkq 140 (214)
T 1sgw_A 74 T--KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV---KV-N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIR 140 (214)
T ss_dssp G--GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC---CC-C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHH
T ss_pred h--hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC---ch-H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHH
Confidence 4 3456799999999988889999999887544321 11 1 3457899999999877 6553 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
|++|||||+.+|++|||||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||+++++. |++
T Consensus 141 rv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~~--~~~ 210 (214)
T 1sgw_A 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKYS--TKI 210 (214)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGGB--C--
T ss_pred HHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEeC--Ccc
Confidence 999999999999999999999999999999999999998766899999999998 4667788887663 454
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.10 Aligned_cols=209 Identities=27% Similarity=0.325 Sum_probs=171.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCC--CCCc---cceEEEEcCCCCCC-
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD--EFVP---ERTAAYISQHDNHI- 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~--~~~~---~~~~~yv~Q~d~~~- 238 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. .... ++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 36999999999999999999999999999999999999998 999999998875 3221 35799999986432
Q ss_pred -CCCCHHHHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 239 -GEMTVRETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 239 -~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+.+||+||+.|+.... +. +.. + ..+....++.+++.+||++..++.+
T Consensus 111 ~~~ltv~enl~~~~~~~~~~---~~~--------------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSIGV---YQD--------------I--------------DDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp CTTSBHHHHHHTTC--------------------------C--------------CHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCCHHHHHHhhhhhcccc---ccC--------------C--------------cHHHHHHHHHHHHHcCChhHhcCCh
Confidence 3569999999863210 00 000 0 0011234677899999999998888
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEE-EEEecChhHHHhhcCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAV-ISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~i-i~i~q~~~~~~~~~D~v 395 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++... +.|+. +.++|+..++..+||+|
T Consensus 160 ~~-----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v 233 (279)
T 2ihy_A 160 GY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKI 233 (279)
T ss_dssp GG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEE
T ss_pred hh-----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEE
Confidence 76 9999999999999999999999999999999999999999999988653 55551 66789999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 234 ~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 234 LLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp EEEETTEEEEEEEHHHHC
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988763
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-38 Score=343.49 Aligned_cols=206 Identities=24% Similarity=0.306 Sum_probs=165.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC--CCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK--LDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||+++++|++++|+||||||||||+++|+|. ++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVE---RGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999998 6776 9999999998865432 23489999999999
Q ss_pred CCCCHHHHHHHHHHh-cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-cccccccc
Q 001291 239 GEMTVRETLAFAARC-QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-DICADTMV 316 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 316 (1106)
+.+||+||+.|+... .+... ...+....++.+++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGREV--------------------------------GVAEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSCC--------------------------------CHHHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhccccC--------------------------------CHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999986531 11000 000112346778999999 57788776
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~v 395 (1106)
++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++.+ .+++|+.++|+..++..+ ||+|
T Consensus 141 ~~----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~--~g~tvi~vtHd~~~~~~~~~d~v 214 (250)
T 2d2e_A 141 NE----GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG--PNFGALVITHYQRILNYIQPDKV 214 (250)
T ss_dssp TC----C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS--TTCEEEEECSSSGGGGTSCCSEE
T ss_pred cc----CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--cCCEEEEEecCHHHHHHhcCCEE
Confidence 53 3999999999999999999999999999999999999999999998743 355666678888888888 5999
Q ss_pred EEecCCeEEEEcCHHH
Q 001291 396 ILLSDGQIVYQGPREL 411 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~ 411 (1106)
++|++|++++.|+++.
T Consensus 215 ~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 215 HVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEETTEEEEEESHHH
T ss_pred EEEECCEEEEEeCHHH
Confidence 9999999999999873
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-38 Score=341.52 Aligned_cols=200 Identities=25% Similarity=0.393 Sum_probs=161.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ +
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998865432 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc-------c
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD-------T 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-------t 314 (1106)
||+||+.|+.. .. . ...++.+++.+||.+..+ +
T Consensus 98 tv~enl~~~~~--~~--~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP--GM--S------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT--TC--C------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC--CC--C------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 00 0 011233455555554333 2
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. .+ .+|++++|+...+ ..||+
T Consensus 138 ~~~~-~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g-~tviivtH~~~~~-~~~d~ 212 (247)
T 2ff7_A 138 IVGE-QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KG-RTVIIIAHRLSTV-KNADR 212 (247)
T ss_dssp BCST-TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TT-SEEEEECSSGGGG-TTSSE
T ss_pred hhhC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CC-CEEEEEeCCHHHH-HhCCE
Confidence 3332 245699999999999999999999999999999999999999999999873 34 4555677877766 45999
Q ss_pred EEEecCCeEEEEcCHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1106)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998874
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-37 Score=338.51 Aligned_cols=198 Identities=16% Similarity=0.228 Sum_probs=167.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 46999999999999999999999999999999999999998 999982 35799999999888899999
Q ss_pred HHHHHHHHhc-CCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 245 ETLAFAARCQ-GVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E~l~f~~~~~-~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
||+.|+.... +. .... ..+....++.+++.+||++..+..+++
T Consensus 85 enl~~~~~~~~~~-------------------~~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 128 (253)
T 2nq2_C 85 DIVLMGRSTHINT-------------------FAKP------------KSHDYQVAMQALDYLNLTHLAKREFTS----- 128 (253)
T ss_dssp HHHHGGGGGGSCT-------------------TCCC------------CHHHHHHHHHHHHHTTCGGGTTSBGGG-----
T ss_pred HHHHHhhhhhccc-------------------ccCC------------CHHHHHHHHHHHHHcCChHHhcCChhh-----
Confidence 9999864321 10 0000 001123467789999999988888765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||+|++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999875432 4556668899999999999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 207 ~~~g~~~~~~ 216 (253)
T 2nq2_C 207 FKFGETRNIL 216 (253)
T ss_dssp EEEEEHHHHC
T ss_pred EecCCHHHHh
Confidence 9999988763
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=347.26 Aligned_cols=211 Identities=26% Similarity=0.412 Sum_probs=172.3
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+ +++++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEhh
Confidence 56788887762 123589999999999999999999999999999999998764 4899999998764
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCCCC
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLPGV 993 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~g~ 993 (1106)
. ..+++.+||++|++.+++ .||+||+.|+.. .... ++.++++++.+++.+..+... +. .+
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~ 137 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RG 137 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TS
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc----CCCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-Cc
Confidence 3 234567999999998776 599999987521 1111 234678899999987665432 11 13
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. +|+|||++|||++. + +.||++++|++ |
T Consensus 138 ~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G 213 (243)
T 1mv5_A 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLST-I-VDADKIYFIEK-G 213 (243)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHHH-H-HHCSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChHH-H-HhCCEEEEEEC-C
Confidence 5799999999999999999999999999999999999999999999987 69999999999863 4 56999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 214 ~i~~~g~~~ 222 (243)
T 1mv5_A 214 QITGSGKHN 222 (243)
T ss_dssp EECCCSCHH
T ss_pred EEEEeCCHH
Confidence 898877654
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-37 Score=340.68 Aligned_cols=221 Identities=24% Similarity=0.270 Sum_probs=174.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHI 238 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVT---GGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEE---EEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---CeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 46999999999999999999999999999999999984 566 9999999998754332 23499999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-cccccccc
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVG 317 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg 317 (1106)
+.+||+|++.+...... . ..+. +.. ...+....++.+++.+||+ ...++.++
T Consensus 110 ~~~tv~e~~~~~~~~~~-------------~--~~~~-~~~-----------~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 162 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVR-------------S--YRGQ-ETL-----------DRFDFQDLMEEKIALLKMPEDLLTRSVN 162 (267)
T ss_dssp TTCBHHHHHHHHHHHHH-------------H--GGGC-CCC-----------CHHHHHHHHHHHHHHTTCCTTTTTSBTT
T ss_pred ccccHHHHHHHHHHhhh-------------h--hhcc-ccC-----------CHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 99999999987542100 0 0000 000 0011123567889999996 56777664
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhh-cCeEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL-FDDII 396 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~vi 396 (1106)
. .|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.. . +++|++++|+..++..+ ||+|+
T Consensus 163 ~----~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~ 236 (267)
T 2zu0_C 163 V----GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVH 236 (267)
T ss_dssp T----TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEE
T ss_pred c----CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEE
Confidence 2 3999999999999999999999999999999999999999999998643 3 45666788888888776 89999
Q ss_pred EecCCeEEEEcCHHHHHHHHHhcCCC
Q 001291 397 LLSDGQIVYQGPRELVLEFFESMGFK 422 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~f~~~G~~ 422 (1106)
+|++|++++.|+++++.. ++..||.
T Consensus 237 ~l~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 237 VLYQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEETTEEEEEECTTHHHH-HHTTTCT
T ss_pred EEECCEEEEEcCHHHHhh-hhhcchh
Confidence 999999999999988753 4455543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=340.13 Aligned_cols=198 Identities=24% Similarity=0.332 Sum_probs=171.0
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++||+|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999987 3 999999988754322 356999999998889999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+.. ... . ...++.+++.+||++..+..+++
T Consensus 90 v~e~l~~~~~-~~~----------~----------------------------~~~~~~~l~~~~l~~~~~~~~~~---- 126 (249)
T 2qi9_C 90 VWHYLTLHQH-DKT----------R----------------------------TELLNDVAGALALDDKLGRSTNQ---- 126 (249)
T ss_dssp HHHHHHTTCS-STT----------C----------------------------HHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred HHHHHHHhhc-cCC----------c----------------------------HHHHHHHHHHcCChhHhcCChhh----
Confidence 9999987521 000 0 12356789999999988887765
Q ss_pred CCChhhhhHHHHHHHHhcCCc-------cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 323 GVSGGQKKRVTTGEMMVGPAL-------ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~-------vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+||+||+.+|+ +|||||||+|||+.++..+.+.|+++.+ . +++|++++|+..++..++|++
T Consensus 127 -LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 127 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-Q-GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEECSCHHHHHHHCSEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999 9999999999999999999999998754 3 456667889999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|++++.|+++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVL 221 (249)
T ss_dssp EEEETTEEEEEEEHHHHS
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=345.56 Aligned_cols=209 Identities=21% Similarity=0.363 Sum_probs=167.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998754322 357999999987776 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc--CCcccccccccCc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL--GLDICADTMVGDE 319 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 319 (1106)
||+|||.|+.... ... + ++... .....++.+++.+ ||+...+..+++
T Consensus 108 tv~enl~~~~~~~--~~~-~---~~~~~------------------------~~~~~~~~~l~~l~~gl~~~~~~~~~~- 156 (271)
T 2ixe_A 108 SFRENIAYGLTRT--PTM-E---EITAV------------------------AMESGAHDFISGFPQGYDTEVGETGNQ- 156 (271)
T ss_dssp BHHHHHHTTCSSC--CCH-H---HHHHH------------------------HHHHTCHHHHHHSTTGGGSBCCGGGTT-
T ss_pred cHHHHHhhhcccC--ChH-H---HHHHH------------------------HHHHhHHHHHHhhhcchhhhhcCCcCC-
Confidence 9999999863211 000 0 00000 0011234567777 777766666554
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.... +++|++++|+...+. .||+|++|+
T Consensus 157 ----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 157 ----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 99999999999999999999999999999999999999999999864322 455666788887765 599999999
Q ss_pred CCeEEEEcCHHHHHH
Q 001291 400 DGQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1106)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=342.71 Aligned_cols=212 Identities=25% Similarity=0.376 Sum_probs=170.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.|+.. ..+++|+||||+|++|+++||+||||||||||+++|+|..+ + +|+|.++|.+.
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i 83 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNV 83 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEh
Confidence 47889999877421 11358999999999999999999999999999999999875 3 79999999876
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g 992 (1106)
.. ..+++.+||++|++.+++ .||+||+.|+.. ... ++.+.++++.+++.+..+. ..+.+
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~- 152 (260)
T 2ghi_A 84 NKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DAT----DEEVIKATKSAQLYDFIEALPKKWDTIVGNK- 152 (260)
T ss_dssp GGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESSS-
T ss_pred hhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccccccCC-
Confidence 43 234567999999998875 699999987521 111 2345677777777554321 12221
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+.+|||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ |+|||++|||++. + +.||++++|++
T Consensus 153 ~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~- 228 (260)
T 2ghi_A 153 GMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNK- 228 (260)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEET-
T ss_pred cCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEEC-
Confidence 347999999999999999999999999999999999999999999999864 8999999999974 4 56999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 229 G~i~~~g~~~ 238 (260)
T 2ghi_A 229 GKIVEKGTHK 238 (260)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999988754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=340.16 Aligned_cols=207 Identities=17% Similarity=0.205 Sum_probs=171.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.++.. ...+.+|+|+||+|+ |++++|+||||||||||+++|+|.. + .+|+|.++|.+..
T Consensus 2 l~~~~l~~~y~~~---------~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 2 IQLKNVGITLSGK---------GYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVR 68 (263)
T ss_dssp EEEEEEEEEEEEE---------TTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGG
T ss_pred EEEEEEEEEeCCC---------CccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECc
Confidence 5678888776420 011469999999999 9999999999999999999999987 5 4899999998754
Q ss_pred hhcccceEE-EEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHH
Q 001291 924 QETFARISG-YCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 924 ~~~~~~~~g-~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
....++.+| |++|++.+ .+||+||+.+...++ .. .++.++++++.+++. +..+..+ .+||||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqk 134 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQS 134 (263)
T ss_dssp GCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHH
T ss_pred chHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHH
Confidence 211145689 99999877 789999998865432 11 134578999999998 8777664 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcC-eEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D-~v~~l~~gG~~~~~G~ 1080 (1106)
||++|||||+.+|++|||||||+|||+.++..+++.|+++.+ |||++|||++ .+...|| ++++|++ |++++.|+
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~ 209 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPIS 209 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecC
Confidence 999999999999999999999999999999999999998753 9999999987 3667899 9999985 78999887
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
..
T Consensus 210 ~~ 211 (263)
T 2pjz_A 210 VS 211 (263)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-37 Score=337.83 Aligned_cols=194 Identities=21% Similarity=0.198 Sum_probs=167.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEE-EEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA-YISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 243 (1106)
+++|+|+|++++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ ||+|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 98 999999998764321246799 99998766 8999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRR 322 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~r 322 (1106)
+||+.|+...... ....++.+++.+||+ +..++.+++
T Consensus 91 ~enl~~~~~~~~~--------------------------------------~~~~~~~~l~~~gl~~~~~~~~~~~---- 128 (263)
T 2pjz_A 91 NDIVYLYEELKGL--------------------------------------DRDLFLEMLKALKLGEEILRRKLYK---- 128 (263)
T ss_dssp HHHHHHHHHHTCC--------------------------------------CHHHHHHHHHHTTCCGGGGGSBGGG----
T ss_pred HHHHHHhhhhcch--------------------------------------HHHHHHHHHHHcCCChhHhcCChhh----
Confidence 9999986532100 012356789999998 888887765
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC-eEEEecCC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD-DIILLSDG 401 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D-~vilL~~G 401 (1106)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 129 -LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 129 -LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp -SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 99999999999999999999999999999999999999999998752 2 66668899899999999 99999999
Q ss_pred eEEEEcCHHHHH
Q 001291 402 QIVYQGPRELVL 413 (1106)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1106)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999998875
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=339.59 Aligned_cols=202 Identities=22% Similarity=0.354 Sum_probs=165.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999998 999999999876432 2467999999987776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccc------
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTM------ 315 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~------ 315 (1106)
||+||+.|+... .. ....++.+++.+|+.+..+..
T Consensus 91 tv~enl~~~~~~-~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG-DY--------------------------------------TDEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS-CS--------------------------------------CHHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC-CC--------------------------------------CHHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 00 001245567778887665543
Q ss_pred -ccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 316 -VGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 316 -vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
++ .....|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +.+|++++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~-~~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--K-GRTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--T-TSEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCChHHH-HhCCE
Confidence 22 2345699999999999999999999999999999999999999999999874 3 44556677877766 46999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999988753
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=335.08 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=160.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999999864 7999999998754322 357999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC-------Ccccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG-------LDICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 314 (1106)
||+||+.|+.. . . .. ..+..+++.++ +++..||
T Consensus 108 tv~enl~~~~~-~-~-~~-------------------------------------~~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL-D-A-TD-------------------------------------EEVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT-T-C-CH-------------------------------------HHHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC-C-C-CH-------------------------------------HHHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 0 0 00 01122333333 4445566
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ....|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++. .+ ++|++++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~-~tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KN-RTLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TT-SEEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHH-HhCCE
Confidence 6553 345699999999999999999999999999999999999999999999874 24 4556677877766 46999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|+++..|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=367.60 Aligned_cols=214 Identities=23% Similarity=0.304 Sum_probs=177.3
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.++||+++|+. +++++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 406 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV--DSGSICLDGHD 406 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECCEE
Confidence 36899999998852 124699999999999999999999999999999999998764 48999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-------VGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~~~~ 991 (1106)
... ..+++.+|||+|++.+++ .|++||+.++.. + +. .++.++++++.+++.+..+.. ++..
T Consensus 407 ~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~---~-~~----~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~ 477 (582)
T 3b5x_A 407 VRDYKLTNLRRHFALVSQNVHLFN-DTIANNIAYAAE---G-EY----TREQIEQAARQAHAMEFIENMPQGLDTVIGEN 477 (582)
T ss_pred hhhCCHHHHhcCeEEEcCCCcccc-ccHHHHHhccCC---C-CC----CHHHHHHHHHHCCCHHHHHhCcccccchhcCC
Confidence 643 345678999999998876 599999988631 1 11 134578889999887655443 2332
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++. .+.||++++|++
T Consensus 478 -~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~--~~~~d~i~~l~~ 553 (582)
T 3b5x_A 478 -GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDE 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCEEEEEEC
Confidence 346999999999999999999999999999999999999999999999864 9999999999863 467999999985
Q ss_pred CCEEEEEecCC
Q 001291 1072 GGREVYVGPLG 1082 (1106)
Q Consensus 1072 gG~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 554 -G~i~~~g~~~ 563 (582)
T 3b5x_A 554 -GEIIERGRHA 563 (582)
T ss_pred -CEEEEECCHH
Confidence 7999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=328.18 Aligned_cols=201 Identities=20% Similarity=0.325 Sum_probs=159.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|+++.++. +++++|+||||+|++|+++||+||||||||||+++|+|..++ .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP--SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEECS---
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CccEEEECC---
Confidence 4788899887641 234689999999999999999999999999999999998764 589999988
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCC
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPGVNG 995 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g~~~ 995 (1106)
.+||++|++.+++. ||+||+.|+.. ... ....++++.+++.+..+. ..+.+ +.+
T Consensus 70 -------~i~~v~q~~~~~~~-tv~enl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~ 130 (229)
T 2pze_A 70 -------RISFCSQFSWIMPG-TIKENIIFGVS------YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGEG-GIT 130 (229)
T ss_dssp -------CEEEECSSCCCCSB-CHHHHHHTTSC------CCH----HHHHHHHHHTTCHHHHTTSTTGGGSCBCTT-CTT
T ss_pred -------EEEEEecCCcccCC-CHHHHhhccCC------cCh----HHHHHHHHHhCcHHHHHhCcccccccccCC-CCc
Confidence 28999999988775 99999987531 111 123345555555433222 12212 357
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~-l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++. ++++. +|+|||++|||++. + +.||++++|++ |+
T Consensus 131 LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~~-~-~~~d~v~~l~~-G~ 206 (229)
T 2pze_A 131 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GS 206 (229)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChHH-H-HhCCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999997 45554 48999999999863 4 56999999985 78
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|+..
T Consensus 207 i~~~g~~~ 214 (229)
T 2pze_A 207 SYFYGTFS 214 (229)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99988753
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=355.11 Aligned_cols=212 Identities=20% Similarity=0.286 Sum_probs=176.2
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||+++|+. ++..+|+||||+|++||+++|+||||||||||+++|+|..+ .+|+|.++|.+.
T Consensus 19 ~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i 84 (390)
T 3gd7_A 19 QMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSW 84 (390)
T ss_dssp CEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBT
T ss_pred eEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEEC
Confidence 5899999988742 23468999999999999999999999999999999999864 479999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCC------CCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL------PGV 993 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~------~g~ 993 (1106)
.. ..+++.+|||+|++.+++ +||+||+.+.. .. .++.++++++.++|.++.++.... .+.
T Consensus 85 ~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~----~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g 153 (390)
T 3gd7_A 85 DSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AH----SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153 (390)
T ss_dssp TSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CS----CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTT
T ss_pred CcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------cc----CHHHHHHHHHHhCCHHHHhhccccccccccccc
Confidence 53 234577999999999887 69999996421 11 134578899999998877765431 112
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+|||||||||+|||||+.+|+|||||||||+||+..+..+++.|+++. .|+|+|++|||++ ....||++++|++ |
T Consensus 154 ~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G 229 (390)
T 3gd7_A 154 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-N 229 (390)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-T
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-C
Confidence 3499999999999999999999999999999999999999999999864 5899999999986 3467999999985 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
+++..|++.+
T Consensus 230 ~i~~~g~~~e 239 (390)
T 3gd7_A 230 KVRQYDSILE 239 (390)
T ss_dssp EEEEESSHHH
T ss_pred EEEEECCHHH
Confidence 9999998653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=355.07 Aligned_cols=200 Identities=23% Similarity=0.242 Sum_probs=165.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
..+|+|||++|++||+++|+|||||||||||++|+|+++ + +|+|.++|.++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999986 5 8999999999876544 368999999998886 7
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC---
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD--- 318 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 318 (1106)
||+||+.+... . ....++.+++.+||.+..+..+..
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964210 0 011345678888888776665542
Q ss_pred ---ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 319 ---EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 319 ---~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
+....|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. . ++++++++|+. +....||+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~-~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--A-DCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--T-TSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--C-CCEEEEEEcCH-HHHHhCCEE
Confidence 2234499999999999999999999999999999999999999999998742 2 45566677775 566779999
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
++|++|++++.|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999999854
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=327.86 Aligned_cols=200 Identities=22% Similarity=0.364 Sum_probs=157.1
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++|+++.|+. +++++|+||||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 4 l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g---- 66 (237)
T 2cbz_A 4 ITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG---- 66 (237)
T ss_dssp EEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----
T ss_pred EEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----
Confidence 678898887641 12468999999999999999999999999999999999876 4689999998
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCCC
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPGVNGL 996 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g~~~L 996 (1106)
.+||++|++.+ +..||+||+.|+... ..+ . .+++++.+++.+.. +...+.+ +.+|
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~------~~~-~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~L 128 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQL------EEP-Y---YRSVIQACALLPDLEILPSGDRTEIGEK-GVNL 128 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCC------CTT-H---HHHHHHHTTCHHHHTTSTTGGGSEESTT-SBCC
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCcccc------CHH-H---HHHHHHHHhhHHHHHhccccccccccCC-CCCC
Confidence 28999999864 578999999876321 111 1 22334444432111 0011111 3479
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR---NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~---~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
|||||||++|||||+.+|+||||||||+|||+.++..+++.|+ ++. +|+|||++|||++. + ..||++++|++ |
T Consensus 129 SgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~-G 204 (237)
T 2cbz_A 129 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSG-G 204 (237)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEET-T
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeC-C
Confidence 9999999999999999999999999999999999999999995 343 58999999999974 4 57999999985 7
Q ss_pred EEEEEecCC
Q 001291 1074 REVYVGPLG 1082 (1106)
Q Consensus 1074 ~~~~~G~~~ 1082 (1106)
++++.|+..
T Consensus 205 ~i~~~g~~~ 213 (237)
T 2cbz_A 205 KISEMGSYQ 213 (237)
T ss_dssp EEEEEECHH
T ss_pred EEEEeCCHH
Confidence 999988754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=371.20 Aligned_cols=213 Identities=26% Similarity=0.356 Sum_probs=173.5
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.++||+|+|+. +.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 353 ~~i~~~~v~~~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 418 (598)
T 3qf4_B 353 GEIEFKNVWFSYDK------------KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV--DRGQILVDGID 418 (598)
T ss_dssp CCEEEEEEECCSSS------------SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEECCC------------CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCeEEEECCEE
Confidence 36899999988742 23589999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccccc-------CCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLV-------GLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-------~~~ 991 (1106)
... ..+++.+|||+|++.+++ .||+||+.++.. .... +.++++++.+++.+..+... +..
T Consensus 419 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~ 488 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLTDN 488 (598)
T ss_dssp GGGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCHHH
T ss_pred hhhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhcCC
Confidence 654 345668999999998775 699999987621 1111 23456666666655443321 111
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++. + +.||++++|++
T Consensus 489 -g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 564 (598)
T 3qf4_B 489 -GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRD 564 (598)
T ss_dssp -HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECS
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 24699999999999999999999999999999999999999999999985 59999999999984 4 56999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 565 -G~i~~~g~~~~ 575 (598)
T 3qf4_B 565 -GEIVEMGKHDE 575 (598)
T ss_dssp -SSEEECSCHHH
T ss_pred -CEEEEECCHHH
Confidence 78999998653
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-37 Score=325.19 Aligned_cols=188 Identities=18% Similarity=0.257 Sum_probs=157.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999998 999999998875 23567999999998899999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+.|+....+. . . + ...++.+++.+||+.. +..+++ ||
T Consensus 98 nl~~~~~~~~~-~--------------------~--------------~-~~~~~~~l~~~gl~~~-~~~~~~-----LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K--------------------V--------------N-KNEIMDALESVEVLDL-KKKLGE-----LS 135 (214)
T ss_dssp HHHHHHHHTTC-C--------------------C--------------C-HHHHHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHhcCC-c--------------------h--------------H-HHHHHHHHHHcCCCcC-CCChhh-----CC
Confidence 99997543211 0 0 0 1235678999999877 766654 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++.+ .+ ++|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g-~tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EK-GIVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HH-SEEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999998764 34 45556778888888888888755 4444
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-36 Score=369.09 Aligned_cols=214 Identities=21% Similarity=0.316 Sum_probs=175.1
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|++|+|+. ++.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~--~~G~i~i~g~~ 406 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP--ERGRVEVDELD 406 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC--SEEEEEESSSB
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC--CCcEEEECCEE
Confidence 46999999998852 234689999999999999999999999999999999998764 58999999998
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
... ..+++.+|||+|++.+++ .|++||+.++.. ... ++.+.++++..++.+.. +..++..
T Consensus 407 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~ 476 (587)
T 3qf4_A 407 VRTVKLKDLRGHISAVPQETVLFS-GTIKENLKWGRE-----DAT----DDEIVEAAKIAQIHDFIISLPEGYDSRVERG 476 (587)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-EEHHHHHTTTCS-----SCC----HHHHHHHHHHTTCHHHHHTSSSGGGCEECSS
T ss_pred cccCCHHHHHhheEEECCCCcCcC-ccHHHHHhccCC-----CCC----HHHHHHHHHHhCcHHHHHhcccchhhHhcCC
Confidence 754 335677999999998875 599999987531 111 22345666666665432 2333433
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++. ...||++++|++
T Consensus 477 ~-~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~--~~~~d~i~vl~~ 552 (587)
T 3qf4_A 477 G-RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT--ALLADKILVLHE 552 (587)
T ss_dssp S-CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH--HTTSSEEEEEET
T ss_pred C-CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH--HHhCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999875 58999999999863 468999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 553 -G~i~~~g~~~e 563 (587)
T 3qf4_A 553 -GKVAGFGTHKE 563 (587)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-36 Score=369.52 Aligned_cols=214 Identities=25% Similarity=0.356 Sum_probs=175.9
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..++++|++|+|+. ++.++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p--~~G~i~~~g~~ 404 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 404 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEE
Confidence 46899999988753 234689999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~ 991 (1106)
... ..+++.+|||+|++.+++. ||+||+.++.. ... ++.+.++++..++.+..+. .++..
T Consensus 405 ~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~ 474 (578)
T 4a82_A 405 IKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRP-----TAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER 474 (578)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCS-----SCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred hhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC
Confidence 654 3456679999999988765 99999987631 111 2346677777777554332 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+|||||||||+.+++.+++.++++. +|+|+|++|||++. + +.||++++|++
T Consensus 475 g-~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~ 550 (578)
T 4a82_A 475 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIEN 550 (578)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEET
T ss_pred C-CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 3 4699999999999999999999999999999999999999999999885 57999999999984 4 67999999985
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 551 -G~i~~~g~~~e 561 (578)
T 4a82_A 551 -GHIVETGTHRE 561 (578)
T ss_dssp -TEEEEEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=321.71 Aligned_cols=196 Identities=21% Similarity=0.312 Sum_probs=150.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999998 99999998 49999999887774 999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.|+.... . ....+. .+.. ..+..++. ++...++.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~---~~~~------------------------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV---IKAC------------------------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH---HHHT------------------------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH---HHHh------------------------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9999853110 0 000000 0000 00111111 12223444442 34569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-FKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~-l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. . +++|+.++|+..++. .||+|++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~-~~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--C-CCEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999986 34432 2 345666778877764 6999999999999
Q ss_pred EEEcCHHHHH
Q 001291 404 VYQGPRELVL 413 (1106)
Q Consensus 404 v~~G~~~~~~ 413 (1106)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999998875
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=365.13 Aligned_cols=213 Identities=24% Similarity=0.305 Sum_probs=176.7
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+. +++++|+|+||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p--~~G~i~~~g~~~ 407 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 407 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC--CCCeEEECCEEc
Confidence 5899999988742 114589999999999999999999999999999999998764 589999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccccc-------ccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQS-------LVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~-------~~~~~g 992 (1106)
.. ..+++.+|||+|++.+++ .|++||+.++.. .+.. ++.++++++.+++.+..+. .++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~----~~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~- 477 (582)
T 3b60_A 408 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 477 (582)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred cccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCC----CCCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-
Confidence 43 335567999999998876 599999988631 1111 2447788888888765443 23333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++. + +.||++++|++
T Consensus 478 ~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~- 553 (582)
T 3b60_A 478 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVED- 553 (582)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEEC-
Confidence 357999999999999999999999999999999999999999999999864 9999999999974 3 67999999985
Q ss_pred CEEEEEecCC
Q 001291 1073 GREVYVGPLG 1082 (1106)
Q Consensus 1073 G~~~~~G~~~ 1082 (1106)
|++++.|+..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b60_A 554 GIIVERGTHS 563 (582)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEecCHH
Confidence 7999999754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=324.08 Aligned_cols=199 Identities=23% Similarity=0.301 Sum_probs=150.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999999997 99999998 4999999975 5689999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCc-ccccccccCccCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLD-ICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~rg 323 (1106)
||+.|+.... ... ..++ .+ ...+.+.+++. ...++.++ .....
T Consensus 84 enl~~~~~~~--~~~---~~~~---~~---------------------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV---IQ---------------------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH---HH---------------------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH---HH---------------------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9999853210 000 0000 00 00012223321 12223333 23456
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++......+++|+.++|+...+ ..||+|++|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~-~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYL-PQVDVIIVMSGGKI 206 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTG-GGSSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHH-HhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999884211111245566677777765 57999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
++.|+++++..
T Consensus 207 ~~~g~~~~~~~ 217 (237)
T 2cbz_A 207 SEMGSYQELLA 217 (237)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHhh
Confidence 99999988754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=363.45 Aligned_cols=208 Identities=24% Similarity=0.392 Sum_probs=165.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999998 9999999999876543 4679999999877765
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+.... ..+...+.+ +..+ .+.. .-.+++..||.+|+ .+
T Consensus 430 tv~eni~~~~~~~----~~~~~~~~~---~~~~------------------------~~~~--~~~lp~g~~t~~~~-~g 475 (578)
T 4a82_A 430 TVKENILLGRPTA----TDEEVVEAA---KMAN------------------------AHDF--IMNLPQGYDTEVGE-RG 475 (578)
T ss_dssp BHHHHHGGGCSSC----CHHHHHHHH---HHTT------------------------CHHH--HHTSTTGGGCBCCG-GG
T ss_pred cHHHHHhcCCCCC----CHHHHHHHH---HHhC------------------------cHHH--HHhCcchhhhhhcc-CC
Confidence 9999998863210 000000000 0000 0001 12456677899985 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..|||||||||+|||||+.+|++++|||||||||+.+...+.+.++++. .++| ++.++|+...+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-~i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRT-TLIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCE-EEEEecCHHHH-HcCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999998763 3445 55577877766 569999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-35 Score=362.17 Aligned_cols=208 Identities=25% Similarity=0.378 Sum_probs=165.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999998 9999999999876543 467999999987775 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|+.... ..+ ++....+..+ .+..+ -.+++..||.+|+ .+
T Consensus 432 tv~eni~~~~~~~----~~~---~~~~~~~~~~------------------------~~~~i--~~l~~g~~~~~~~-~~ 477 (587)
T 3qf4_A 432 TIKENLKWGREDA----TDD---EIVEAAKIAQ------------------------IHDFI--ISLPEGYDSRVER-GG 477 (587)
T ss_dssp EHHHHHTTTCSSC----CHH---HHHHHHHHTT------------------------CHHHH--HTSSSGGGCEECS-SS
T ss_pred cHHHHHhccCCCC----CHH---HHHHHHHHhC------------------------cHHHH--HhcccchhhHhcC-CC
Confidence 9999998863210 000 0000000000 01111 2456667888885 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .+ .+++.++|+...+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~-~tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KG-CTTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TT-CEEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CC-CEEEEEecChHHH-HhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999998863 34 4555577777665 589999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=359.00 Aligned_cols=202 Identities=23% Similarity=0.352 Sum_probs=164.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999998865432 467999999988776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-------cccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt 314 (1106)
||+||+.|+.. ... .. ..++++++.+|+ ++..||
T Consensus 432 tv~eni~~~~~-~~~--~~------------------------------------~~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-GEY--TR------------------------------------EQIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-CCC--CH------------------------------------HHHHHHHHHCCCHHHHHhCcccccc
Confidence 99999998631 000 00 012233333333 345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++. .++| ++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGE-NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKT-VLVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCE-EEEEecCHHHH-HhCCE
Confidence 8875 456699999999999999999999999999999999999999999999863 3444 55566766655 57999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=358.59 Aligned_cols=202 Identities=22% Similarity=0.353 Sum_probs=165.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999998 9999999999876543 457999999988776 5
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC-------cccccc
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL-------DICADT 314 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt 314 (1106)
||+||+.|+.. ... .. ..++++++.+|+ ++..||
T Consensus 432 tv~eni~~~~~-~~~--~~------------------------------------~~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-EEY--SR------------------------------------EQIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-SCC--CH------------------------------------HHHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-CCC--CH------------------------------------HHHHHHHHHcCCHHHHHhccccccc
Confidence 99999998631 000 00 012223333333 345678
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+|+ .+..||||||||++||||++.+|++++|||||||||+.++..+.+.++++. .++| ++.++|+...+ +.||+
T Consensus 473 ~~~~-~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TTSE-EEEECSCGGGT-TTCSE
T ss_pred cccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCE-EEEEeccHHHH-HhCCE
Confidence 8885 456699999999999999999999999999999999999999999999874 2444 55567776655 57999
Q ss_pred EEEecCCeEEEEcCHHHHHH
Q 001291 395 IILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1106)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999999864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=361.53 Aligned_cols=208 Identities=25% Similarity=0.349 Sum_probs=164.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999998 9999999999876543 467999999987775 6
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++.... . .+ ++ .++....+ .+..+ -.++...||.+|+ .+
T Consensus 444 tv~eni~~~~~~~---~-~~---~~------------------~~~~~~~~------~~~~~--~~~~~g~~t~~~~-~g 489 (598)
T 3qf4_B 444 TVKENLKYGNPGA---T-DE---EI------------------KEAAKLTH------SDHFI--KHLPEGYETVLTD-NG 489 (598)
T ss_dssp BHHHHHHSSSTTC---C-TT---HH------------------HHHTTTTT------CHHHH--HTSTTGGGCBCHH-HH
T ss_pred cHHHHHhcCCCCC---C-HH---HH------------------HHHHHHhC------CHHHH--HhccccccchhcC-CC
Confidence 9999999863210 0 00 00 00000000 01111 1355567888885 44
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .++ +++.++|+...+ ..||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~-t~i~itH~l~~~-~~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGK-TSIIIAHRLNTI-KNADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTS-EEEEESCCTTHH-HHCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCC-EEEEEecCHHHH-HcCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999863 344 455567777766 459999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-34 Score=381.77 Aligned_cols=214 Identities=27% Similarity=0.392 Sum_probs=181.3
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|+|+.. ++.++|+||||+|++|+++||+||||||||||+++|.|..+ +.+|+|.+||.++
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~~i 482 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGVDV 482 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc--cccCcccCCCccc
Confidence 68999999998743 23579999999999999999999999999999999999876 4589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g 992 (1106)
++ ..+++.+|||+|++.++. .|++||+.|+. .+.+ ++.+.++++..++.+.. +..+|..|
T Consensus 483 ~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~----~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G 552 (1321)
T 4f4c_A 483 RDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGIT----REEMVAACKMANAEKFIKTLPNGYNTLVGDRG 552 (1321)
T ss_dssp TTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCC----HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSS
T ss_pred hhccHHHHhhcccccCCcceeeC-CchhHHHhhhc-----ccch----HHHHHHHHHHccchhHHHcCCCCCccEecCCC
Confidence 54 456778999999998875 69999999873 1222 34577888888775433 44566555
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
. +||||||||++||||++++|+||+||||||+||+++++.+++.|+++. +|+|+|+|||+++. ...||+|++|+ +
T Consensus 553 ~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~-~ 627 (1321)
T 4f4c_A 553 T-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCK-N 627 (1321)
T ss_dssp C-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEE-T
T ss_pred C-CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHh-CCCEEEEEcccHHH--HHhCCEEEEee-C
Confidence 4 599999999999999999999999999999999999999999999876 58999999999974 58899999998 5
Q ss_pred CEEEEEecCCC
Q 001291 1073 GREVYVGPLGH 1083 (1106)
Q Consensus 1073 G~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 628 G~ive~Gth~e 638 (1321)
T 4f4c_A 628 GQVVEVGDHRA 638 (1321)
T ss_dssp TEEEEEECHHH
T ss_pred CeeeccCCHHH
Confidence 89999998643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=323.01 Aligned_cols=197 Identities=22% Similarity=0.362 Sum_probs=148.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++|.. +.+|+||||+|++|+++||+||||||||||+++|+|..+ +.+|+|.++|
T Consensus 40 ~l~~~~l~~~~---------------~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g--- 99 (290)
T 2bbs_A 40 SLSFSNFSLLG---------------TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG--- 99 (290)
T ss_dssp ----------C---------------CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS---
T ss_pred eEEEEEEEEcC---------------ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC---
Confidence 47778877631 258999999999999999999999999999999999876 4689999987
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCC
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSL-------VGLPGVNG 995 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~-------~~~~g~~~ 995 (1106)
.+||++|++.+++ .||+||+. +. . ... ..+.++++.+++.+..+.. .+. .+.+
T Consensus 100 -------~i~~v~Q~~~l~~-~tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~ 159 (290)
T 2bbs_A 100 -------RISFCSQNSWIMP-GTIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGIT 159 (290)
T ss_dssp -------CEEEECSSCCCCS-SBHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CC
T ss_pred -------EEEEEeCCCccCc-ccHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCc
Confidence 2899999988877 49999997 32 1 111 1234455666664432221 111 1347
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l-~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|++|||||||+|||+.++..+++.+ +++. +|+|||++||+++. + ..||++++|++ |+
T Consensus 160 LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~~-~-~~~d~i~~l~~-G~ 235 (290)
T 2bbs_A 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHE-GS 235 (290)
T ss_dssp CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHHH-H-HHSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHHH-H-HcCCEEEEEEC-Ce
Confidence 9999999999999999999999999999999999999999974 4554 58999999999863 4 56999999985 78
Q ss_pred EEEEecCCC
Q 001291 1075 EVYVGPLGH 1083 (1106)
Q Consensus 1075 ~~~~G~~~~ 1083 (1106)
+++.|+..+
T Consensus 236 i~~~g~~~~ 244 (290)
T 2bbs_A 236 SYFYGTFSE 244 (290)
T ss_dssp EEEEECHHH
T ss_pred EEEeCCHHH
Confidence 999987643
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-34 Score=377.80 Aligned_cols=215 Identities=27% Similarity=0.378 Sum_probs=175.0
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
..+.|+||+|+|+.. ++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 386 g~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~--~~G~i~i~g~~ 453 (1284)
T 3g5u_A 386 GNLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP--LDGMVSIDGQD 453 (1284)
T ss_dssp CCEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC--SEEEEEETTEE
T ss_pred CeEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEE
Confidence 468999999988632 124699999999999999999999999999999999998764 58999999988
Q ss_pred CCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCC
Q 001291 922 KKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLP 991 (1106)
Q Consensus 922 ~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~ 991 (1106)
+.. ..+++.+|||+|++.+++. ||+||+.|+.. +.. ++.++++++..++.+.. +..++..
T Consensus 454 i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~ 523 (1284)
T 3g5u_A 454 IRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVT----MDEIEKAVKEANAYDFIMKLPHQFDTLVGER 523 (1284)
T ss_dssp GGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCC----HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSS
T ss_pred HHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCC----HHHHHHHHHHhCcHHHHHhccccccccccCC
Confidence 654 3456679999999988764 99999998731 112 23355666666654322 3334444
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 992 g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
| .+||||||||++|||||+++|+||+||||||+||+++++.+++.++++. +|+|+|+|||+++. + ..||+|++|++
T Consensus 524 g-~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 G-AQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDG 599 (1284)
T ss_dssp S-CSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSS
T ss_pred C-CccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEEC
Confidence 4 4699999999999999999999999999999999999999999998875 59999999999873 4 66999999974
Q ss_pred CCEEEEEecCCC
Q 001291 1072 GGREVYVGPLGH 1083 (1106)
Q Consensus 1072 gG~~~~~G~~~~ 1083 (1106)
|++++.|+..+
T Consensus 600 -G~i~~~g~~~~ 610 (1284)
T 3g5u_A 600 -GVIVEQGNHDE 610 (1284)
T ss_dssp -SCCCCEECHHH
T ss_pred -CEEEEECCHHH
Confidence 79999998643
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-34 Score=317.11 Aligned_cols=194 Identities=21% Similarity=0.307 Sum_probs=146.8
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++| .++||+|++.+++ .||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMP-GTIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCS-SBHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCc-ccHHH
Confidence 5899999999999999999999999999999999999997 99999998 4899999987777 59999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
|+. +.... . ....+. .+.. ..+..++.+ ....++.++. ....||
T Consensus 118 nl~-~~~~~----~-~~~~~~---~~~~------------------------~l~~~l~~~--~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSYD----E-YRYRSV---IKAC------------------------QLEEDISKF--AEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCCC----H-HHHHHH---HHHT------------------------TCHHHHHTS--TTGGGCBC-----CCCC
T ss_pred Hhh-Ccccc----h-HHHHHH---HHHh------------------------ChHHHHHhc--cccccchhcC-ccCcCC
Confidence 997 32100 0 000000 0000 001112222 2223444442 245699
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHH-HHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCF-KQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. . +++|++++|+...+ ..||+|++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~-~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C-CCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 2 45566678887766 569999999999999
Q ss_pred EEcCHHHHH
Q 001291 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=320.23 Aligned_cols=191 Identities=26% Similarity=0.309 Sum_probs=162.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 577788889999999999999999999999999999998 899876 2369999999877788999998
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+.+..... . . ....++.+++.+||.+.+++.+++ |||
T Consensus 438 ~~~~~~~~-----------~---~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----------L---N------------------------SNFYKTELLKPLGIIDLYDRNVED-----LSG 474 (607)
T ss_dssp HHHHHHHH-----------H---H------------------------CHHHHHHTHHHHTCTTTTTSBGGG-----CCH
T ss_pred HHhhhccC-----------C---C------------------------HHHHHHHHHHHcCCchHhcCChhh-----CCH
Confidence 86531100 0 0 012356789999999988888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++.. +.+|+.++|+..++..+||+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN-EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 99999999999999999999999999999999999999999886543 45566689999999999999999986 8899
Q ss_pred EEcCHHHHHH
Q 001291 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.3e-31 Score=316.04 Aligned_cols=191 Identities=25% Similarity=0.307 Sum_probs=161.1
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.+ ...++||+|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 567777888999999999999999999999999999998 899875 2369999999877788999988
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+....... .. ....++.+++.+||.+..++.+++ |||
T Consensus 368 ~~~~~~~~-----------~~---------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----------LN---------------------------SNFYKTELLKPLGIIDLYDREVNE-----LSG 404 (538)
T ss_dssp HHHHHHHH-----------HT---------------------------CHHHHHHTTTTTTCGGGTTSBGGG-----CCH
T ss_pred HHhhhccC-----------CC---------------------------HHHHHHHHHHHcCChhhhcCChhh-----CCH
Confidence 76531100 00 012356678889999888888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||++|+.+|++|+|||||+|||..++..+.+.|++++...+ .+|++++|+..++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999998764344 4566689999999999999999986 8999
Q ss_pred EEcCHHHHHH
Q 001291 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=311.75 Aligned_cols=192 Identities=20% Similarity=0.212 Sum_probs=160.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
.|+++|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++| +.++|++|+....+.+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 466677889999999999999999999999999999998 99998765 358999998766678999999
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+.+..... . . . ....++.+++.+||.+..+..+++ |||
T Consensus 351 l~~~~~~~-~--------------------~-~---------------~~~~~~~~l~~~~l~~~~~~~~~~-----LSG 388 (538)
T 3ozx_A 351 LENASKDA-L--------------------S-T---------------SSWFFEEVTKRLNLHRLLESNVND-----LSG 388 (538)
T ss_dssp HHHHCSST-T--------------------C-T---------------TSHHHHHTTTTTTGGGCTTSBGGG-----CCH
T ss_pred HHHhhhhc-c--------------------c-h---------------hHHHHHHHHHHcCCHHHhcCChhh-----CCH
Confidence 98732100 0 0 0 012346678889999988888876 999
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD--GQIV 404 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~--G~iv 404 (1106)
||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++. .+++|+.++|+..++..+||+|++|++ |.+.
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~-~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE-RKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-TTCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 9999999999999999999999999999999999999999998754 456667789999999999999999986 6677
Q ss_pred EEcCHHHHH
Q 001291 405 YQGPRELVL 413 (1106)
Q Consensus 405 ~~G~~~~~~ 413 (1106)
..|++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777765543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=311.61 Aligned_cols=193 Identities=24% Similarity=0.228 Sum_probs=161.4
Q ss_pred ceeeeceeEEEeCc-----eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCC
Q 001291 165 LTILKDVSGIVKPG-----RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1106)
..+|+|+|+++++| |+++|+|||||||||||++|+|.++|+ +|+. + ....++|++|+.....
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCC
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccC
Confidence 35789999999999 779999999999999999999999997 7752 1 1346999999876666
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
..||+|++.... .+. . . ....++.+++.+||.+.++..+++
T Consensus 427 ~~tv~e~~~~~~--~~~--~-----------------~-----------------~~~~~~~~l~~l~l~~~~~~~~~~- 467 (608)
T 3j16_B 427 PGTVRQLFFKKI--RGQ--F-----------------L-----------------NPQFQTDVVKPLRIDDIIDQEVQH- 467 (608)
T ss_dssp CSBHHHHHHHHC--SST--T-----------------T-----------------SHHHHHHTHHHHTSTTTSSSBSSS-
T ss_pred CccHHHHHHHHh--hcc--c-----------------c-----------------cHHHHHHHHHHcCChhhhcCChhh-
Confidence 789999875321 110 0 0 012345678999999999988876
Q ss_pred cCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 320 MRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++..++|+|++|+
T Consensus 468 ----LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~-g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 468 ----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN-KKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp ----CCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH-TCEEEEECSCHHHHHHHCSEEEECE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999886544 4556668999999999999999998
Q ss_pred C--CeEEEEcCHHHHHH
Q 001291 400 D--GQIVYQGPRELVLE 414 (1106)
Q Consensus 400 ~--G~iv~~G~~~~~~~ 414 (1106)
+ |+++..|++++++.
T Consensus 543 ~~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKNAHARAPESLLT 559 (608)
T ss_dssp EETTTEEECCCCEEHHH
T ss_pred CCCCeEEecCChHHHhh
Confidence 6 99999999998875
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-32 Score=334.10 Aligned_cols=154 Identities=18% Similarity=0.175 Sum_probs=113.6
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAW 955 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~ 955 (1106)
++.+++|++++|+|+||||||||++.++|.... .|. +.+.|++|++. ..+.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~----- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNA----- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHH-----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHH-----
Confidence 458999999999999999999999999985321 121 12455566531 1222222
Q ss_pred hcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH-----H
Q 001291 956 LRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-----A 1030 (1106)
Q Consensus 956 ~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~-----~ 1030 (1106)
.+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||++||.. .
T Consensus 329 ~~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 329 YSWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp HTTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred HHcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 1111 11 122 2234555444443 2469999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCc----------cHHHHHhcCeEEEEecC
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQP----------SIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~----------~~~~~~~~D~v~~l~~g 1072 (1106)
+..+.++++.+++.|.|||+|+|++ . .+...||++++|++|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999998 4 355679999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=313.93 Aligned_cols=194 Identities=21% Similarity=0.272 Sum_probs=155.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+...|+++.|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| |.| +|.+.
T Consensus 435 ~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~ 491 (986)
T 2iw3_A 435 DLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPT 491 (986)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCC
T ss_pred eeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcc
Confidence 455667777653 4579999999999999999999999999999999995 111 34432
Q ss_pred ChhcccceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHH
Q 001291 923 KQETFARISGYCEQND-IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++|++|+. ...+.+|+.|++.+ ... .. ++.++++++.+++. +..++.+ .+|||||
T Consensus 492 ~~---~~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGq 553 (986)
T 2iw3_A 492 QE---ECRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGW 553 (986)
T ss_dssp TT---TSCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHH
T ss_pred cc---ceeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHH
Confidence 21 12368999875 56678999999975 111 11 45678999999995 5666664 3699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE-EEe
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV-YVG 1079 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~-~~G 1079 (1106)
|||++|||||+.+|+||||||||+|||+.++..+++.|++ .|+|||++|||++ .+...||++++|++ |+++ +.|
T Consensus 554 kQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G 628 (986)
T 2iw3_A 554 KMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKG 628 (986)
T ss_dssp HHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCC
Confidence 9999999999999999999999999999999999999987 5899999999987 47788999999985 6775 677
Q ss_pred cCC
Q 001291 1080 PLG 1082 (1106)
Q Consensus 1080 ~~~ 1082 (1106)
+..
T Consensus 629 ~~~ 631 (986)
T 2iw3_A 629 NFT 631 (986)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-29 Score=315.31 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=133.6
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHH---------------------HhhhCCCCCc--ee---EEEEEEcCccCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------------------DVLAGRKTGG--YI---TGDIRISGYPKK 923 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~i~g~~~~ 923 (1106)
.+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .+.|.++|.+..
T Consensus 32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 489999999999999999999999999997 6666543321 12 346777776543
Q ss_pred hhcccceEEEEccCCCC-------------------CCCCCHHHHHHHhhhhcCCCCCChHHHH------HHHHHHHHHc
Q 001291 924 QETFARISGYCEQNDIH-------------------SPFVTVYESLFYSAWLRLPPEVNSETRK------MFIEEVMELV 978 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~-------------------~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~v~~~l~~~ 978 (1106)
.. .++.+|+++|...+ ++.+||.||+.+...+.... ......+ ....++++.+
T Consensus 112 ~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 112 RN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTE-KEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp ----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHHT
T ss_pred cc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccch-hhhHHHHHHHHHHHHHHHHHHHc
Confidence 21 12334555553322 34679999987743222111 0000000 0112358888
Q ss_pred CCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCc
Q 001291 979 ELKPL-RQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 979 ~l~~~-~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
+|.+. .++.+ .+|||||||||+|||||+.+|+ ||||||||+|||+.++..++++|++++++|.|||+||||+
T Consensus 190 gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 190 GLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 98764 45553 4699999999999999999998 9999999999999999999999999988899999999998
Q ss_pred cHHHHHhcCeEEEEe-----cCCEEEEEecCCC
Q 001291 1056 SIDIFEAFDELFLMK-----RGGREVYVGPLGH 1083 (1106)
Q Consensus 1056 ~~~~~~~~D~v~~l~-----~gG~~~~~G~~~~ 1083 (1106)
+ ....||++++|. ++|++++.|++.+
T Consensus 265 ~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 265 D--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp H--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred H--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 6 356799999993 3689999998753
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-25 Score=275.53 Aligned_cols=107 Identities=25% Similarity=0.291 Sum_probs=92.9
Q ss_pred HHHHHHHcCCcc-cccccccCccCCCCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhcC
Q 001291 299 TDYYLKVLGLDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCFKQNIHINS 374 (1106)
Q Consensus 299 ~~~~l~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~ 374 (1106)
...+++.+||.. ..+..+++ |||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 825 ~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQPATT-----LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-N- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCCGGG-----CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-
T ss_pred HHHHHHHcCCCcccccCchhh-----CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-
Confidence 356899999987 66776665 9999999999999999865 99999999999999999999999998864 3
Q ss_pred CeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 375 GTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 375 ~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
+.+|++++|+..++ ..||+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45666688888876 689999999 789999999999885
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=272.37 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCccc-ccccccCccCCCCChhhhhHHHHHHHHhcCC---ccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001291 298 ITDYYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA---LALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373 (1106)
Q Consensus 298 ~~~~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqRvsia~al~~~p---~vllLDEptsgLD~~~~~~i~~~l~~~~~~~ 373 (1106)
.+..+|+.+||... .+..+ ..|||||||||+||++|+.+| ++|||||||+|||+.+...+++.|+++.. .
T Consensus 784 ~~~~~L~~vGL~~~~lgq~~-----~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~ 857 (916)
T 3pih_A 784 RTLQVLHDVGLGYVKLGQPA-----TTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-R 857 (916)
T ss_dssp HHHHHHHHTTGGGSBTTCCS-----TTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCchhhccCCc-----cCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-c
Confidence 45678999999753 23333 359999999999999999865 79999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHHH
Q 001291 374 SGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVLE 414 (1106)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~~ 414 (1106)
+ .+|++++|+...+ ..||+|++| ++|+|+++|+++++.+
T Consensus 858 G-~TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 858 G-NTVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp T-CEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred C-CEEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 4 4566688888766 569999999 8999999999999863
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-25 Score=272.89 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=94.3
Q ss_pred HHHHHHHHcCCcc-cccccccCccCCCCChhhhhHHHHHHHHhcC---CccceeecCCCCCCHHHHHHHHHHHHHHHHhc
Q 001291 298 ITDYYLKVLGLDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGP---ALALFMDEISTGLDSSTTFQIVNCFKQNIHIN 373 (1106)
Q Consensus 298 ~~~~~l~~lgL~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~---p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~ 373 (1106)
.+..+|+.+||.. ..+..++. |||||||||+||++|+.+ |++|||||||+|||..+...+.+.|++++. .
T Consensus 709 ~~~~~L~~~gL~~~~l~~~~~~-----LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~ 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQPATE-----LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVD-A 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGG-----CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCcccccCCccc-----CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C
Confidence 4678899999987 34666654 999999999999999996 799999999999999999999999998864 3
Q ss_pred CCeEEEEEecChhHHHhhcCeEEEe------cCCeEEEEcCHHHHH
Q 001291 374 SGTAVISLLQPAPETYNLFDDIILL------SDGQIVYQGPRELVL 413 (1106)
Q Consensus 374 ~~t~ii~i~q~~~~~~~~~D~vilL------~~G~iv~~G~~~~~~ 413 (1106)
+.+|++++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 55666788999888 889999999 799999999999874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-27 Score=280.12 Aligned_cols=197 Identities=14% Similarity=0.053 Sum_probs=150.1
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-E-EEEcCccCChhcccceEEEEccCCC---CCCCCCHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-D-IRISGYPKKQETFARISGYCEQNDI---HSPFVTVYE 948 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~g~v~q~~~---~~~~~tv~e 948 (1106)
++|+++++|++++|+||||||||||+++|+|... +..| . |.++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999765 3478 8 999983 2456899999874 345579999
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCe----EEEeC-
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE--LVANPSI----IFMDE- 1021 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~a--L~~~p~i----llLDE- 1021 (1106)
|+ |+....... .. ++.+.++++.+++.+..+ ..+|||||||||+|||| |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~--~~---~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGA--TL---LHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSC--CS---SCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCc--ch---HHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 88 654321111 00 112456677788876654 23699999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc--H---HHHHhcCe-----EEEEecCCEEEEEecCCCc----hhH
Q 001291 1022 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS--I---DIFEAFDE-----LFLMKRGGREVYVGPLGHH----SCH 1087 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~--~---~~~~~~D~-----v~~l~~gG~~~~~G~~~~~----~~~ 1087 (1106)
||++||+. ...+.++++++ |.|+|+++|+.+ . ++...||+ +++|++.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~~---~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEKL---NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHHT---TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHHh---CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 66666666553 789999999987 3 34578999 99998345677 7765432 234
Q ss_pred HHHHHHhCC
Q 001291 1088 LISYFEVCP 1096 (1106)
Q Consensus 1088 ~~~yf~~~~ 1096 (1106)
+.+||...+
T Consensus 344 i~~~f~g~~ 352 (460)
T 2npi_A 344 IREYFYGSL 352 (460)
T ss_dssp HHHHHHCCT
T ss_pred HHHHhCCCC
Confidence 678987643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=254.14 Aligned_cols=218 Identities=18% Similarity=0.161 Sum_probs=144.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCC------------------------------------ceeEE
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG------------------------------------GYITG 913 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~G 913 (1106)
.++++++++|.+| +++|+|+||||||||+++|.+...+ ....|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3689999999999 9999999999999999999653211 01157
Q ss_pred EEEEcCccCChhc---cc-ceEEEEccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCCCC---
Q 001291 914 DIRISGYPKKQET---FA-RISGYCEQNDIHSPFVTVYESLFYSAWLR-----------------------LPPEVN--- 963 (1106)
Q Consensus 914 ~i~i~g~~~~~~~---~~-~~~g~v~q~~~~~~~~tv~e~l~~~~~~~-----------------------~~~~~~--- 963 (1106)
.+++||.+..... .. ..+++++|++.+.. .+..+...|--... ......
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 7999998875422 22 34799999876653 24444333211100 000000
Q ss_pred -------------------------------hHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC--
Q 001291 964 -------------------------------SETRKMFIEEVMELVELKPLR----------------QS---LVGLP-- 991 (1106)
Q Consensus 964 -------------------------------~~~~~~~v~~~l~~~~l~~~~----------------~~---~~~~~-- 991 (1106)
.+.....+.+.++.+++.... +. .....
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 000112344455555554310 00 01000
Q ss_pred ----CCCC-CCHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcC
Q 001291 992 ----GVNG-LSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1064 (1106)
Q Consensus 992 ----g~~~-LS~Gqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D 1064 (1106)
.... ||||||||++||++|+.+| ++|||||||+|||+.+...|.+.|+++. +|+|||+|||+++ +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 0111 7999999999999999999 9999999999999999999999999997 5899999999985 567899
Q ss_pred eEEEE----ecCCEEEEEe-cCCCc--hhHHHHHHH
Q 001291 1065 ELFLM----KRGGREVYVG-PLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1065 ~v~~l----~~gG~~~~~G-~~~~~--~~~~~~yf~ 1093 (1106)
++++| .+ |+++... .+... ..++..+..
T Consensus 364 ~i~~l~k~~~~-G~~~~~~~~l~~~~~~~ei~~~~~ 398 (415)
T 4aby_A 364 HHYKVEKQVED-GRTVSHVRLLTGDERLEEIARMLS 398 (415)
T ss_dssp EEEEEEEEEET-TEEEEEEEECCSHHHHHHHHHHHH
T ss_pred eEEEEEEeccC-CceEEEEEECCchhhHHHHHHHhc
Confidence 99999 64 6665443 33221 244555554
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-26 Score=274.44 Aligned_cols=186 Identities=10% Similarity=0.040 Sum_probs=142.4
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-E-EEECCccCCCCCccceEEEEcCCCC---CCCCCCH
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-R-VTYNGHNMDEFVPERTAAYISQHDN---HIGEMTV 243 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~-V~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV 243 (1106)
.++|+.+++|++++|+||||||||||+++|+|.+.|+ +| + |.++|. +++.++|++|+.. +...+||
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccch
Confidence 3799999999999999999999999999999999887 89 9 999982 3567999999873 4566899
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+ |+..... +.. . . ..+..+++.+||+...+ + ..
T Consensus 200 ~eni-~~~~~~~-~~~--------~---~------------------------~~~~~ll~~~gl~~~~~--~-----~~ 235 (460)
T 2npi_A 200 QLPT-WGQSLTS-GAT--------L---L------------------------HNKQPMVKNFGLERINE--N-----KD 235 (460)
T ss_dssp TCTT-CSCBCBS-SCC--------S---S------------------------CCBCCEECCCCSSSGGG--C-----HH
T ss_pred hhhh-ccccccc-Ccc--------h---H------------------------HHHHHHHHHhCCCcccc--h-----hh
Confidence 9998 7543210 000 0 0 00122456678877665 3 34
Q ss_pred CChhhhhHHHHHHH--HhcCCcc----ceeec-CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----HHHhh
Q 001291 324 VSGGQKKRVTTGEM--MVGPALA----LFMDE-ISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP-----ETYNL 391 (1106)
Q Consensus 324 LSGGqkqRvsia~a--l~~~p~v----llLDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~-----~~~~~ 391 (1106)
|||||||||++|++ |+.+|++ ||||| ||++||+. ...+.+.+++ .+.++|+++|++.+ ++..+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 4445455543 35565555544431 66789
Q ss_pred cCe-----EEEec-CCeEEEEcCHHHHH
Q 001291 392 FDD-----IILLS-DGQIVYQGPRELVL 413 (1106)
Q Consensus 392 ~D~-----vilL~-~G~iv~~G~~~~~~ 413 (1106)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99987764
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-23 Score=244.23 Aligned_cols=237 Identities=15% Similarity=0.131 Sum_probs=147.6
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC-----------------------------------CCc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-----------------------------------LKV 208 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----------------------------------~~~ 208 (1106)
+..+|+++|+.+.+| +++|+|||||||||||++|.+.+.+. ..-
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~ 125 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAG 125 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTS
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCC
Confidence 346899999999999 99999999999999999997665420 011
Q ss_pred eeEEEECCccCCCCCc----cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC-----CcchhhhhHhhHHHHhcCCCCCC
Q 001291 209 SGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGEMTVRETLAFAARCQGV-----GTRYEMLTELSRREKAAGIKPDP 279 (1106)
Q Consensus 209 ~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-----~~~~~~~~~~~~~ek~~~~~p~~ 279 (1106)
.|++.+||.+++.... ...+++++|++.++. .+..+...|--..... ...+.....+.+..... .....
T Consensus 126 ~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l-~~~~~ 203 (415)
T 4aby_A 126 RGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERL-QASES 203 (415)
T ss_dssp CEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred ceEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHH-Hhhhh
Confidence 6889999988763221 234899999876544 3666665553221100 00000000000000000 00000
Q ss_pred -----------ChHHHHHhh-----------cchhhhHhHHHHHHHHHcCCcccc----------------cc---cccC
Q 001291 280 -----------DIDVFMKAA-----------STEGEEANVITDYYLKVLGLDICA----------------DT---MVGD 318 (1106)
Q Consensus 280 -----------d~~~~~~~~-----------~~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~ 318 (1106)
.++...+.. ..........++..++.++++... +. .+..
T Consensus 204 ~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 283 (415)
T 4aby_A 204 SKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSA 283 (415)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEES
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEc
Confidence 000000000 000112234556667777765411 00 1111
Q ss_pred ------ccCCC-CChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHH
Q 001291 319 ------EMRRG-VSGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETY 389 (1106)
Q Consensus 319 ------~~~rg-LSGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 389 (1106)
...+. |||||||||+||++|+.+| ++|||||||+|||+.+...+.+.|+++. .+ .+|++++|.. ++.
T Consensus 284 ~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~-~~vi~itH~~-~~~ 359 (415)
T 4aby_A 284 NPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DT-RQVLVVTHLA-QIA 359 (415)
T ss_dssp SSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TT-SEEEEECSCH-HHH
T ss_pred CCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CC-CEEEEEeCcH-HHH
Confidence 01111 6999999999999999999 9999999999999999999999999875 24 4455567775 567
Q ss_pred hhcCeEEEe----cCCeEEEEc
Q 001291 390 NLFDDIILL----SDGQIVYQG 407 (1106)
Q Consensus 390 ~~~D~vilL----~~G~iv~~G 407 (1106)
+.||++++| .+|+++...
T Consensus 360 ~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 360 ARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TTCSEEEEEEEEEETTEEEEEE
T ss_pred hhcCeEEEEEEeccCCceEEEE
Confidence 899999999 999987653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-26 Score=243.63 Aligned_cols=172 Identities=17% Similarity=0.125 Sum_probs=108.6
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
++.+|+|| ++|++++|+||||||||||+++|+|. .+ .+|+|............++.+||++|++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p--~~G~I~~~~~~~~~~~~~~~ig~v~q~~--------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL--QSKQVSRIILTRPAVEAGEKLGFLPGTL--------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HH--HTTSCSEEEEEECSCCTTCCCCSSCC-----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CC--cCCeeeeEEecCCchhhhcceEEecCCH--------H
Confidence 34688885 89999999999999999999999997 52 2444421101001112356789999976 4
Q ss_pred HHH-HHhhhh--cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 948 ESL-FYSAWL--RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 948 e~l-~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
||+ .+.... ....... ...++++++. + | |||||++|||||+.+|++|||||||+
T Consensus 77 enl~~~~~~~~~~~~~~~~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVE----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp ---CTTTHHHHHHHTTTSC----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHHHHHHhcc----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 454 231100 0000001 1224455543 2 3 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDAHF 1100 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~~~ 1100 (1106)
| ++..+++.|+++ ++|+||| +|||++. +++....++| ...+++.|...|.+.-
T Consensus 134 ~----~~~~l~~~l~~l-~~g~tii-vtHd~~~-----~~~~~~~~~G------------~~~~~~~~~~~~~~~~ 186 (208)
T 3b85_A 134 T----TPAQMKMFLTRL-GFGSKMV-VTGDITQ-----VDLPGGQKSG------------LRLVRHILRGVDDVHF 186 (208)
T ss_dssp C----CHHHHHHHHTTB-CTTCEEE-EEEC-----------------C------------CHHHHHHTTTCTTEEE
T ss_pred c----cHHHHHHHHHHh-cCCCEEE-EECCHHH-----HhCcCCCCCc------------HHHHHHHhcCCCCccE
Confidence 9 889999999988 6689999 9999752 2333333332 3578888887776654
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-23 Score=215.91 Aligned_cols=150 Identities=15% Similarity=0.174 Sum_probs=103.8
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCC-CCCHHHHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSP-FVTVYESLFY 952 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~-~~tv~e~l~~ 952 (1106)
||||++++||+++|+||||||||||++++.+-.. .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1256666543210 001111111
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH---
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR--- 1029 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~--- 1029 (1106)
. ..+.....+.....+.. ...|+|||||++||+|++.+|++|+|||||++||+.
T Consensus 64 ----------------~-~~~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------Y-IVSKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------H-HHHHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------H-HHHHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 1 11122234444444432 247999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 1030 -------------AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 1030 -------------~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
....+++.|+++.++|.|+|++|||++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668999999888777999999999985 2344444
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.9e-22 Score=227.89 Aligned_cols=81 Identities=23% Similarity=0.362 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHHHh------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|+|||+||||++ ..+.||+++
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~~ 355 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRKL 355 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCEE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEEE
Confidence 469999999999999999 799999999999999999999999999999888999999999986 467899999
Q ss_pred EEecCCEEEE
Q 001291 1068 LMKRGGREVY 1077 (1106)
Q Consensus 1068 ~l~~gG~~~~ 1077 (1106)
+|++ |+++.
T Consensus 356 ~l~~-G~i~~ 364 (365)
T 3qf7_A 356 RITG-GVVVN 364 (365)
T ss_dssp EEET-TEEC-
T ss_pred EEEC-CEEEe
Confidence 9985 67754
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-22 Score=225.06 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeE--E
Q 001291 994 NGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL--F 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v--~ 1067 (1106)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. +|.|||+|||+++ +.+.||++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 469999999999999997 6889999999999999999999999999984 5899999999975 56889987 8
Q ss_pred EEecCCEEEEEecCC
Q 001291 1068 LMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1068 ~l~~gG~~~~~G~~~ 1082 (1106)
+|.+|...+....+.
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888877777666554
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=217.63 Aligned_cols=81 Identities=23% Similarity=0.361 Sum_probs=70.6
Q ss_pred CCCChhhhhHHHHHHHHh------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
..|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.. . +.+|++++|+... ...+|+|
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~-g~tvi~itH~~~~-~~~~d~~ 354 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-L-NKVIVFITHDREF-SEAFDRK 354 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-S-SSEEEEEESCHHH-HTTCSCE
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecchHH-HHhCCEE
Confidence 459999999999999999 79999999999999999999999999998753 3 4455667788766 7889999
Q ss_pred EEecCCeEEE
Q 001291 396 ILLSDGQIVY 405 (1106)
Q Consensus 396 ilL~~G~iv~ 405 (1106)
++|++|+++.
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999974
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-23 Score=222.60 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=96.9
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
.++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC---------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH-------
Confidence 445789996 89999999999999999999999999 886 777732111111112246799999975
Q ss_pred HHHHH-HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 243 VRETL-AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 243 V~E~l-~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
+||+ .|..... . .+. .. .+ ...++.+++. |
T Consensus 76 -~enl~~~~~~~~------~---~~~------~~-~~-----------------~~~~~~~l~~-g-------------- 106 (208)
T 3b85_A 76 -NEKIDPYLRPLH------D---ALR------DM-VE-----------------PEVIPKLMEA-G-------------- 106 (208)
T ss_dssp -----CTTTHHHH------H---HHT------TT-SC-----------------TTHHHHHHHT-T--------------
T ss_pred -HHHHHHHHHHHH------H---HHH------Hh-cc-----------------HHHHHHHHHh-C--------------
Confidence 5666 3421100 0 000 00 00 0123333432 2
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+ ||||||+|||||+.+|++|||||||+| ++..+.+.|+++ . . +++|+ ++|+..++ +++...++|
T Consensus 107 --l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~-g~tii-vtHd~~~~----~~~~~~~~G 170 (208)
T 3b85_A 107 --I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-F-GSKMV-VTGDITQV----DLPGGQKSG 170 (208)
T ss_dssp --S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-T-TCEEE-EEEC----------------C
T ss_pred --C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-C-CCEEE-EECCHHHH----hCcCCCCCc
Confidence 3 999999999999999999999999999 888888988876 2 3 45566 77876654 444334444
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-23 Score=237.86 Aligned_cols=172 Identities=14% Similarity=0.128 Sum_probs=133.3
Q ss_pred ceeeeceeEEEeCce--------------------EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc
Q 001291 165 LTILKDVSGIVKPGR--------------------LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~ 224 (1106)
..+|+|||+.+++|+ +++|+||||||||||+|+|+|.++|+ +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 468999999999999 99999999999999999999999998 999999987653
Q ss_pred cceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHH
Q 001291 225 ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304 (1106)
Q Consensus 225 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1106)
+ .+|++|++ .++.+|+.||+.++.. +..++.+++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899985 5778899888654310 001456788
Q ss_pred HcCCcccccccccCccCCCCChh--hhhHHHHHHHHhc----------CCccceeecCCCCCCHHHHHHHHHHHHHHHH-
Q 001291 305 VLGLDICADTMVGDEMRRGVSGG--QKKRVTTGEMMVG----------PALALFMDEISTGLDSSTTFQIVNCFKQNIH- 371 (1106)
Q Consensus 305 ~lgL~~~~dt~vg~~~~rgLSGG--qkqRvsia~al~~----------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~- 371 (1106)
.++|.+... .+ . |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~~-~~-----~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYDF-FI-----I-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCSE-EE-----E-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccCC-eE-----E-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 888876532 22 1 8999 9999999999999 9999999999999999999999999988752
Q ss_pred ---hc---CCeEEEEEecChhH--HHhhcCeEE
Q 001291 372 ---IN---SGTAVISLLQPAPE--TYNLFDDII 396 (1106)
Q Consensus 372 ---~~---~~t~ii~i~q~~~~--~~~~~D~vi 396 (1106)
.. ..+++++.+|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555555665555 666666663
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-23 Score=239.75 Aligned_cols=170 Identities=15% Similarity=0.173 Sum_probs=134.2
Q ss_pred EEeeeeeeeeeCCe--------------------EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccc
Q 001291 870 VLLNGVSGAFRPGV--------------------LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR 929 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~ 929 (1106)
.+|++||+++++|+ ++||+||||||||||+|+|+|...+ .+|.|.++|.+.. +
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p--~~GsI~~~g~~~t-----~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNE--EEGAAKTGVVEVT-----M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTT--STTSCCCCC---------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCc--cCceEEECCeecc-----e
Confidence 58999999999999 9999999999999999999997653 3688888886542 1
Q ss_pred eEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHH
Q 001291 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE--QRKRLTIA 1007 (1106)
Q Consensus 930 ~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G--qrqrl~iA 1007 (1106)
.+|++|++ ..+.+|+.|++.++. . +..++++++.+++.+..... .||+| ||||+.||
T Consensus 110 -~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~la 168 (413)
T 1tq4_A 110 -ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDIA 168 (413)
T ss_dssp -CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHHH
T ss_pred -eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHHH
Confidence 27899975 456788888765432 0 11367889999987653332 28999 99999999
Q ss_pred HHHhc----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-----hCC----ceEEEEecCccH-HHHHhcCeEE
Q 001291 1008 VELVA----------NPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG----RTVVCTIHQPSI-DIFEAFDELF 1067 (1106)
Q Consensus 1008 ~aL~~----------~p~illLDEPTsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~tH~~~~-~~~~~~D~v~ 1067 (1106)
++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+++. ++.+.+|++.
T Consensus 169 ~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 169 KAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 99999 999999999999999999999999999884 333 678899998762 2667788775
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-24 Score=226.85 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=116.8
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
...+++| .+|++|++++|+||||||||||+++|+|.... +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~--i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN--LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT--CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc--eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3457888 69999999999999999999999999996542 23333333332221 1235689999987766666776
Q ss_pred HHHHHhhhhcCC---CCCChHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEE
Q 001291 948 ESLFYSAWLRLP---PEVNSETRKMFIEEV------MELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIF 1018 (1106)
Q Consensus 948 e~l~~~~~~~~~---~~~~~~~~~~~v~~~------l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~ill 1018 (1106)
+++........+ .....+..++.+++. ++.+++....+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 665322111100 011223334444444 44555544444442 2466 8999999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 1019 MDEPTSGL----DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 1019 LDEPTsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||+|+ |+..++.++++++++.+ .|.|||++|||++ ++...||++++|.+.|+
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~~ 206 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPGS 206 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC------
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCCC
Confidence 99999998 78899999999999874 5899999999998 58889999999975543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-21 Score=200.77 Aligned_cols=148 Identities=19% Similarity=0.183 Sum_probs=100.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 960 (1106)
+++|+||||||||||+++|+|... |.++|++.... ..++.+||++|+. ++.+++ +. .+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhcC--
Confidence 689999999999999999999643 12233221110 2345689999975 222322 11 1100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCeEEEeC--CCCCCCHHHHHH
Q 001291 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVE-----LVANPSIIFMDE--PTSGLDARAAAI 1033 (1106)
Q Consensus 961 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~a-----L~~~p~illLDE--PTsgLD~~~~~~ 1033 (1106)
.. .+..+.. +..||+|||||++||+| |+.+|++|+||| ||++||+.....
T Consensus 65 --~~----------------~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 --TS----------------KKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp --CC----------------SSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred --Cc----------------ccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 00 0122222 23599999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHhCCceEEEEec---CccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1034 VMRTVRNTVDTGRTVVCTIH---QPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1034 i~~~l~~~~~~g~tvi~~tH---~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
+.+.+++ .+.|+|+++| +.+ .+...+|+ .+|++++..+
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~ 162 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTP 162 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecC
Confidence 9988865 4677888885 655 36667887 4577776543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=213.33 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=68.0
Q ss_pred CCCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE--
Q 001291 322 RGVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI-- 395 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v-- 395 (1106)
..||||||||++||++|+ .+|++++|||||++||+.....+.+.++++. .+ ++++.++|. .++.+.+|++
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~-~~vi~~tH~-~~~~~~~d~~~~ 293 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KH-TQFIVITHN-KIVMEAADLLHG 293 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TT-SEEEEECCC-TTGGGGCSEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CC-CeEEEEECC-HHHHhhCceEEE
Confidence 349999999999999997 6899999999999999999999999999863 23 455556776 5688899987
Q ss_pred EEecCCeE-EEEcCHHH
Q 001291 396 ILLSDGQI-VYQGPREL 411 (1106)
Q Consensus 396 ilL~~G~i-v~~G~~~~ 411 (1106)
++|.+|.. +.....++
T Consensus 294 v~~~~g~s~~~~~~~~~ 310 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEK 310 (322)
T ss_dssp EEESSSCEEEEECCC--
T ss_pred EEEeCCEEEEEEEEcch
Confidence 78887755 34444444
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.1e-23 Score=230.95 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=116.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 46999999999999999999999999999999999997 5877 356778765554 5787
Q ss_pred H-HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 245 E-TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 245 E-~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
| ||.|.... .. .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------------~~-----------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------------TH-----------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------------CH-----------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------------cH-----------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 6 77653100 00 011223332 444444 2 35
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||| |||++.+|+||| ||+||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999877742 1 333 3345689999 9999999
Q ss_pred EEEcCHHHHHHHHHhc
Q 001291 404 VYQGPRELVLEFFESM 419 (1106)
Q Consensus 404 v~~G~~~~~~~~f~~~ 419 (1106)
++.|+++++..+|..+
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999996666543
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-21 Score=195.69 Aligned_cols=147 Identities=14% Similarity=0.086 Sum_probs=95.9
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCC-CCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH-IGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~-~~~lTV~E~l~ 248 (1106)
|||+.+++|++++|+||||||||||++++.+-. ..+++. ...++++|+... ....++.+.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~---------~~~~~d--------~~~g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT---------EVISSD--------FCRGLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG---------GEEEHH--------HHHHHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC---------eEEccH--------HHHHHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965421 112211 122556665311 00001111111
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+ ... .....|.....|.. .-.||||
T Consensus 64 ~------------------------------------------------~~~-~~~~~g~~~~~~~~------~~~s~g~ 88 (171)
T 4gp7_A 64 Y------------------------------------------------IVS-KRLQLGKLTVVDAT------NVQESAR 88 (171)
T ss_dssp H------------------------------------------------HHH-HHHHTTCCEEEESC------CCSHHHH
T ss_pred H------------------------------------------------HHH-HHHhCCCeEEEECC------CCCHHHH
Confidence 1 001 11223443333322 1269999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHH----------------HHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSS----------------TTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
|||++||++++.+|++++|||||++||+. ...++.+.++++... + .+++.++|+..++..
T Consensus 89 ~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g-~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 89 KPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G-FRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T-CSEEEEECSHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C-CcEEEEeCCHHHhhh
Confidence 99999999999999999999999999999 558888888776543 4 455567788777643
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-21 Score=197.87 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=100.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcc
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+++|+|.+. ..+.|... .+......++.++|++|+. ++.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 579999999999999999999974 22334321 1111001245789999974 222222 00 00
Q ss_pred hhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHH--
Q 001291 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM-- 337 (1106)
Q Consensus 260 ~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~a-- 337 (1106)
.. + . +...+..++ .||||||||++||++
T Consensus 63 --------------~~-~-~-----------------------------~~~~~~~~~-----~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 --------------FF-T-S-----------------------------KKLVGSYGV-----NVQYFEELAIPILERAY 92 (178)
T ss_dssp --------------TC-C-C-----------------------------SSEETTEEE-----CHHHHHHHHHHHHHHHH
T ss_pred --------------cC-C-c-----------------------------ccccccccc-----CcCHHHHHHHHHHhhcc
Confidence 00 0 0 011233333 499999999999996
Q ss_pred ---HhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe--cChhHHHhhcCeEEEecCCeEEE
Q 001291 338 ---MVGPALALFMDE--ISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL--QPAPETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 338 ---l~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~--q~~~~~~~~~D~vilL~~G~iv~ 405 (1106)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999988888764 3455777764 788888889998 5566654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.8e-23 Score=228.21 Aligned_cols=160 Identities=11% Similarity=0.110 Sum_probs=117.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||++.++ .++|+++|++|++|+++||+||||||||||+++|+|.. .|.|.
T Consensus 101 ~i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~------ 155 (305)
T 2v9p_A 101 FFNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL------ 155 (305)
T ss_dssp HHHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE------
T ss_pred eEEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE------
Confidence 377888887764 13799999999999999999999999999999999975 35552
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHH-HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYE-SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
+|++|++.++. .|++| |+.|.. +.. . .+++.++.+ |.+..+ +..||||||
T Consensus 156 ---------~~v~q~~~lf~-~ti~~~ni~~~~------~~~-~----~~~~~i~~~-L~~gld-------g~~LSgGqk 206 (305)
T 2v9p_A 156 ---------SFANHKSHFWL-ASLADTRAALVD------DAT-H----ACWRYFDTY-LRNALD-------GYPVSIDRK 206 (305)
T ss_dssp ---------CGGGTTSGGGG-GGGTTCSCEEEE------EEC-H----HHHHHHHHT-TTGGGG-------TCCEECCCS
T ss_pred ---------EEecCcccccc-ccHHHHhhccCc------ccc-H----HHHHHHHHH-hHccCC-------ccCcCHHHH
Confidence 45667665544 46665 665531 111 1 244555553 333222 236999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|| ||||+.+|+||| ||+||+.++..|+. ++|+++ ..+.||++ +|++ |++++.|+.
T Consensus 207 QR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~-G~iv~~g~~ 261 (305)
T 2v9p_A 207 HK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDES-GEQPFNITD 261 (305)
T ss_dssp SC---CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HH---HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeC-CEEEEeCCH
Confidence 99 999999999999 99999999988862 189986 35789999 9974 789988864
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-20 Score=209.07 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=125.5
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCC-CC
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDI-HS 941 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~-~~ 941 (1106)
++++||++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH--cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 3578899999999999999999999999999996542 358899999876421 12 235899999988 77
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEE
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFM 1019 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illL 1019 (1106)
+..|++|++.++.. + ..+ ..+++.+|+.+..+... .+|| |||++|||||+.+|+ +|+|
T Consensus 168 ~~~~v~e~l~~~~~-~-~~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 168 AATVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHHH-T-TCS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHHH-c-CCc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 88899999987532 1 100 12455666665555443 3589 999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecCcc-------H-HHHHhcCeEEEEecC
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS-------I-DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~~~-------~-~~~~~~D~v~~l~~g 1072 (1106)
| ||+|||+..+. +++. +.|.|+|++||... . ......+.|.++..|
T Consensus 228 D-ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 228 D-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp E-GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred e-CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 9 99999998652 3443 35899999999321 0 122345678888764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-20 Score=209.41 Aligned_cols=174 Identities=14% Similarity=0.139 Sum_probs=128.7
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---------ccceEEEEcCCCC-C
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---------PERTAAYISQHDN-H 237 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~ 237 (1106)
++++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.+..... .++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 45788999999999999999999999999999999887 899999998864321 1236899999987 8
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+|++.++... +. | ..+++.+|+.+..+..++
T Consensus 167 ~~~~~v~e~l~~~~~~-~~-----------------------d-------------------~~lldt~gl~~~~~~~~~ 203 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLME 203 (302)
T ss_dssp CHHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEECCCCCSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHc-CC-----------------------c-------------------chHHhcCCCCcchhHHHH
Confidence 8899999999986421 10 0 002344677666666665
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hh
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP---------AP 386 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~ 386 (1106)
+ || |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.++++ ++|- ..
T Consensus 204 e-----LS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 204 E-----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp H-----HH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred H-----HH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 5 99 999999999999999 99999 99999987652 2332223445554 5552 23
Q ss_pred HHHhhcCeEEEecCCeE
Q 001291 387 ETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~i 403 (1106)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 34456678888888864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-20 Score=205.49 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCcc
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTR 259 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 259 (1106)
.++|+||||||||||+|+|+|...|+ +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 47899999999999999999999987 999999998875544457899999999999999999999987533210000
Q ss_pred hhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHh
Q 001291 260 YEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMV 339 (1106)
Q Consensus 260 ~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~ 339 (1106)
+ .+...+. ....+..+++ ||||||||+++||+++
T Consensus 81 -~------------------------------------~i~~~~~----~~~~~~~~~~-----LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 81 -E------------------------------------PIEKYIN----EQYEKFLKEE-----VNIARKKRIPDTRVHC 114 (270)
T ss_dssp -H------------------------------------HHHHHHH----HHHHHHHHHH-----SCTTCCSSCCCCSCCE
T ss_pred -H------------------------------------HHHHHHH----HHHHhhhHHh-----cCcccchhhhhheeee
Confidence 0 0000111 1222344433 9999999999999987
Q ss_pred cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe
Q 001291 340 GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL 382 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~ 382 (1106)
. ++|||||++|||+.. . +.++.+.. . .++|++++
T Consensus 115 ~---lllldep~~gL~~lD-~---~~l~~L~~-~-~~vI~Vi~ 148 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD-L---EFMKHLSK-V-VNIIPVIA 148 (270)
T ss_dssp E---EEEECCCSSSCCHHH-H---HHHHHHHT-T-SEEEEEET
T ss_pred e---eEEEecCCCcCCHHH-H---HHHHHHHh-c-CcEEEEEe
Confidence 5 999999999999987 3 33444432 2 55555443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-22 Score=215.42 Aligned_cols=178 Identities=10% Similarity=-0.018 Sum_probs=111.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh----cccceEEEEccCCCCCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE----TFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~g~v~q~~~~~~~~t 945 (1106)
.-|+||||+|++|++++|+||||||||||+++|+|..+ |.|.+ |.+.... ..++.++|++|++..++.++
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 84 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKL 84 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhh
Confidence 36899999999999999999999999999999999652 56777 6543211 12345789998765433221
Q ss_pred H-HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCeEEE
Q 001291 946 V-YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTI-----AVELVANPSIIFM 1019 (1106)
Q Consensus 946 v-~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~i-----A~aL~~~p~illL 1019 (1106)
. .+++.+ ..+..+ ... .....++++++...+. +.+ .+|||||+||++| +++++.+|++++|
T Consensus 85 ~~~~~l~~-~~~~~~--~~g-~~~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 85 KNEDFLEY-DNYANN--FYG-TLKSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp HTTCEEEE-EEETTE--EEE-EEHHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred hccchhhh-hhcccc--cCC-CcHHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 1 011100 001100 000 0122356677654432 111 2489999999999 8999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-------CCceEEEEecCccHHHHHhcCeEE
Q 001291 1020 DEPTSGLDARAAAIVMRTVRNTVD-------TGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 1020 DEPTsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
||||+++|..+...|.+.+.++.. .+.+.|+++|+++ +....+++++
T Consensus 152 de~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~ii 205 (218)
T 1z6g_A 152 LSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNYL 205 (218)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHHH
Confidence 999999999999999988877643 3567778888775 4555566554
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-20 Score=206.92 Aligned_cols=148 Identities=14% Similarity=0.117 Sum_probs=95.6
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 963 (1106)
.+||+||||||||||+++|+|... +..|+|.++|.+......++.+||++|++.+.+.+||.|++.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH
Confidence 489999999999999999999755 3479999999876544455789999999988888999999988754321 111
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 964 ~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
. +.+.+.++ ..+.+... .+||+|||||++||||++. ++||||||+|||+.. .+.++.+.+
T Consensus 80 ~----~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 W----EPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp S----HHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred H----HHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 1 12233332 22333332 2599999999999999886 999999999999986 344555555
Q ss_pred CCceEEEEecCcc
Q 001291 1044 TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1044 ~g~tvi~~tH~~~ 1056 (1106)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998754
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-19 Score=204.65 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=102.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhc-ccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET-FARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~-~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+++++++.+++|++++|+||||||||||+++|+|...+ .+|.|.++|.+..... .++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEe--------------
Confidence 78999999999999999999999999999999997654 3789999886421100 111222211
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+ +||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.++++|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356677776543358999999987 567899999998763
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=189.56 Aligned_cols=75 Identities=23% Similarity=0.320 Sum_probs=68.3
Q ss_pred CCCCHHHHH------HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRK------RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrq------rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
..||||||| |+++|++|+.+|++|||||||+|||+.++..+.+.|+++.+.|.|||+||||++ +...||+++
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 324 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEEE
Confidence 469999999 677888888899999999999999999999999999998777899999999964 578899999
Q ss_pred EEe
Q 001291 1068 LMK 1070 (1106)
Q Consensus 1068 ~l~ 1070 (1106)
+|.
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-21 Score=204.99 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=112.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.++|+| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 457888 68999999999999999999999999999852 23333333322211 1235689999987777777777
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH------HHHcCCcccccccccC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY------LKVLGLDICADTMVGD 318 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 318 (1106)
|++.+.....+....|.. .+. +....++.. ++.+|+...++..++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~----~~~------------------------~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 134 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGT----LAQ------------------------PVRAAAATGVPVLIEVDLAGARAIKKTMPEA 134 (207)
T ss_dssp TCEEEEEEEGGGTEEEEE----EHH------------------------HHHHHHHHTCCEEEECCHHHHHHHHHHCTTS
T ss_pred CCceeehhhcCchhhcCC----cHH------------------------HHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc
Confidence 765432111000000000 000 011112222 3344444444544433
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCC----CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGL----DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
|| +|+.+|++++|||||+|| |+..+.++.+.++++.+..+ .+++.++|+..++..+||+
T Consensus 135 -----lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g-~tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 135 -----VT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD-FDKVVVNRRLESACAELVS 197 (207)
T ss_dssp -----EE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGG-SSEEEECSSHHHHHHHHHH
T ss_pred -----EE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcc-CcEEEECCCHHHHHHHHHH
Confidence 66 899999999999999998 78899999999988765434 4556678999999999999
Q ss_pred EEEec
Q 001291 395 IILLS 399 (1106)
Q Consensus 395 vilL~ 399 (1106)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-19 Score=206.63 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=126.2
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCC-CCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDI-HSP 942 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~-~~~ 942 (1106)
..+||++++|++++|+||||||||||++.|+|...+ ..|+|.++|.+.... .+ ++.++|++|++. ..+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~--~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p 225 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN--EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 225 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc--cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh
Confidence 467889999999999999999999999999996542 258899999876421 12 235899999987 778
Q ss_pred CCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEe
Q 001291 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMD 1020 (1106)
Q Consensus 943 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLD 1020 (1106)
..|++|++.++.... .. ..+++.+|+.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 226 ~~tv~e~l~~~~~~~----~d--------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 226 ATVLSKAVKRGKEEG----YD--------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHHHTT----CS--------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hhhHHHHHHHHHhCC----CH--------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 889999998753211 00 12455666666555443 3588 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hCCceEEEEecC---------ccHHHHHhcCeEEEEecC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQ---------PSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH~---------~~~~~~~~~D~v~~l~~g 1072 (1106)
||+|||+..+. +++. ..|.|+|++||. ++. .....+.|.++..|
T Consensus 286 -pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi-~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSV-VEELGIPVKFIGVG 339 (359)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHH-HHHHCCCEEEEECS
T ss_pred -CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHH-HHHhCCCEEEEeCC
Confidence 99999988653 3333 348999999993 221 23345677777654
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.9e-18 Score=193.27 Aligned_cols=81 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred CCChhhhhHHHHHHHHh---------cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcC
Q 001291 323 GVSGGQKKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFD 393 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~---------~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 393 (1106)
.+|||||||++||++|+ ++|+||||||||++||+..+..+++.++++ . .++++++|. .+ .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~----~-qt~i~~th~-~~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASV----P-QAIVTGTEL-AP---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHS----S-EEEEEESSC-CT---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhc----C-cEEEEEEec-cc---cCC
Confidence 59999999999999999 899999999999999999999999999864 2 567777774 33 899
Q ss_pred eEEEecCCeEEEEcCHHHH
Q 001291 394 DIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~ 412 (1106)
++++|++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.8e-20 Score=216.41 Aligned_cols=180 Identities=15% Similarity=0.115 Sum_probs=139.7
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCc---cCCCC--------CccceEEEEc
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGH---NMDEF--------VPERTAAYIS 232 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~--------~~~~~~~yv~ 232 (1106)
...+|+++ +.+.+|+.++|+|||||||||||++|+|..+++ +|.|.++|. ++.++ ..++.++||+
T Consensus 144 g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~ 219 (438)
T 2dpy_A 144 GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAA 219 (438)
T ss_dssp SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEE
T ss_pred CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEE
Confidence 45699999 999999999999999999999999999999998 999999998 44332 1246899999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccc
Q 001291 233 QH-DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDIC 311 (1106)
Q Consensus 233 Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1106)
|+ +..++.+||.+|+.+.++.... +. .+. ...
T Consensus 220 q~~~~~~~~~~v~~~~~~~ae~~~~--------------~~------~~v---------------------------~~~ 252 (438)
T 2dpy_A 220 PADVSPLLRMQGAAYATRIAEDFRD--------------RG------QHV---------------------------LLI 252 (438)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHT--------------TT------CEE---------------------------EEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHh--------------CC------CCH---------------------------HHH
Confidence 95 5567788999999987643210 00 000 000
Q ss_pred ccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh--cCCe-----EEEEEecC
Q 001291 312 ADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI--NSGT-----AVISLLQP 384 (1106)
Q Consensus 312 ~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~ii~i~q~ 384 (1106)
.|. ...+|+|| |||+|| +++|++ |+|||+.+...+.+.++++.+. .++. +|++++|+
T Consensus 253 ld~------l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHd 316 (438)
T 2dpy_A 253 MDS------LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD 316 (438)
T ss_dssp EEC------HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSC
T ss_pred HHh------HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCC
Confidence 011 12399999 999999 888887 9999999999999999876542 2243 66667787
Q ss_pred hhHHHhhcCeEEEecCCeEEEEcCHHHH
Q 001291 385 APETYNLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 385 ~~~~~~~~D~vilL~~G~iv~~G~~~~~ 412 (1106)
.. ..++|++++|.+|+++..|++.++
T Consensus 317 l~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 317 QQ--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp SC--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred cc--chhhceEEEEeCcEEEEeCCHHHc
Confidence 76 678999999999999999988765
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-19 Score=204.36 Aligned_cols=173 Identities=14% Similarity=0.143 Sum_probs=128.9
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---------ccceEEEEcCCCC-CC
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---------PERTAAYISQHDN-HI 238 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 238 (1106)
+++|+.+++|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++.... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4688899999999999999999999999999999887 899999998864321 1246899999987 88
Q ss_pred CCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC
Q 001291 239 GEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD 318 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 318 (1106)
+.+||+|++.++... +. | ..+++.+|+.+..+..+++
T Consensus 225 p~~tv~e~l~~~~~~-~~-----------------------d-------------------~~lldt~Gl~~~~~~~~~e 261 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-GY-----------------------D-------------------VVLCDTSGRLHTNYSLMEE 261 (359)
T ss_dssp HHHHHHHHHHHHHHT-TC-----------------------S-------------------EEEEECCCCSSCCHHHHHH
T ss_pred hhhhHHHHHHHHHhC-CC-----------------------H-------------------HHHHHhcCCChhhhhHHHH
Confidence 899999999986421 10 0 0023345676666666654
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCc--cceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC---------hhH
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP---------APE 387 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~--vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~---------~~~ 387 (1106)
|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.++|+ ++|. ...
T Consensus 262 -----LS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 262 -----LI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp -----HH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred -----HH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 89 999999999999999 99999 99999987653 2222223445554 5552 233
Q ss_pred HHhhcCeEEEecCCeE
Q 001291 388 TYNLFDDIILLSDGQI 403 (1106)
Q Consensus 388 ~~~~~D~vilL~~G~i 403 (1106)
+....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888888764
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-21 Score=208.91 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=94.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----cceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1106)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+.....+ ++.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 4 77888 766533222 3568899997654433
Q ss_pred CCH-HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCc
Q 001291 241 MTV-RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDE 319 (1106)
Q Consensus 241 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 319 (1106)
++. .+++.+. ... +..|.. ....++.+++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~--~~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYA--NNFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EET--TEEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hcc--cccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 220 0111000 000 000000 00112333443221 1111
Q ss_pred cCCCCChhhhhHHHH-----HHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001291 320 MRRGVSGGQKKRVTT-----GEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI 370 (1106)
Q Consensus 320 ~~rgLSGGqkqRvsi-----a~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.+..
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~ 174 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLN 174 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 3489999999999 899999999999999999999999989988887653
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=1e-19 Score=213.56 Aligned_cols=174 Identities=17% Similarity=0.090 Sum_probs=134.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc---cCCh--------hcccceEEEEccC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY---PKKQ--------ETFARISGYCEQN 937 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~--------~~~~~~~g~v~q~ 937 (1106)
..+|+++ |.|.+|++++|+||||||||||+++|+|...+ ..|.|.++|. +... ...++.++|++|+
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~--~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~ 221 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA--DVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPA 221 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC--SEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECT
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC--CeEEEEEeceecHHHHHHHHhhccccccCceEEEEECC
Confidence 4589999 99999999999999999999999999997654 4799999997 3321 2345779999995
Q ss_pred -CCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 938 -DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 938 -~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
....+.+|+.+++.+.+...... . . ....+.+. ...||+|| ||++|| +.+|++
T Consensus 222 ~~~~~~~~~v~~~~~~~ae~~~~~---~-------~------~v~~~ld~------l~~lS~g~-qrvslA---l~~p~~ 275 (438)
T 2dpy_A 222 DVSPLLRMQGAAYATRIAEDFRDR---G-------Q------HVLLIMDS------LTRYAMAQ-REIALA---IGEPPA 275 (438)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHTT---T-------C------EEEEEEEC------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC---C-------C------CHHHHHHh------HHHHHHHH-HHHHHH---hCCCcc
Confidence 44456678899887765322100 0 0 00111122 23599999 999999 889988
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh---C-Cc-----eEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNTVD---T-GR-----TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
|+|||+.....+.+++.++.+ + |+ ||++++||++ ...||++++|.+ |+++..|++
T Consensus 276 ------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~Ivl~~~~ 339 (438)
T 2dpy_A 276 ------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GHIVLSRRL 339 (438)
T ss_dssp ------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EEEEECHHH
T ss_pred ------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cEEEEeCCH
Confidence 999999999999999999865 3 64 9999999997 367899999974 799988764
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-18 Score=193.05 Aligned_cols=80 Identities=13% Similarity=0.153 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCe
Q 001291 995 GLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1065 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~---------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~ 1065 (1106)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + + .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 7999
Q ss_pred EEEEecCCEEEEEecCCC
Q 001291 1066 LFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1066 v~~l~~gG~~~~~G~~~~ 1083 (1106)
+++|++ |+++..|++.+
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 79999888653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.7e-18 Score=190.67 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=113.3
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
.+|+++++.+++|++++|+||||||||||++.|+|...+ ..| .+.+.+.........+.+.++.+... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 478999999999999999999999999999999995331 124 44333323222222222222333221 12223
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCeEEEeCCCC---
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ-RKRLTIAVELVANPSIIFMDEPTS--- 1024 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq-rqrl~iA~aL~~~p~illLDEPTs--- 1024 (1106)
++..+. + ..+...+.++++++...+. +.+. +.++|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 1 1112222334443322221 1111 12489998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHhC-CceEEEEecCc--cH-------------------HHHHhcCeEEEEecC
Q 001291 1025 G---LDA-RAAAIVMRTVRNTVDT-GRTVVCTIHQP--SI-------------------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1025 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~tH~~--~~-------------------~~~~~~D~v~~l~~g 1072 (1106)
+ +|. .....+++.|++++++ |+|||+++|+. +. .+...||++++|++|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6678899999998754 99999999995 20 356789999999875
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-19 Score=201.43 Aligned_cols=128 Identities=10% Similarity=0.013 Sum_probs=96.9
Q ss_pred ceeE-EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSG-IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|+|. .+++|++++|+||||||||||+++|+|.+.|. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 4444 37899999999999999999999999999874 332 368999999988888 9999975
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+... .+. |+. .....+...++.++ ....+..+.. |||||
T Consensus 143 ~~~~-~g~--------------------~~~--------------~d~~~~~~~L~~l~-~~~~~~~~~~-----lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGF--------------------PES--------------YNRRALMRFVTSVK-SGSDYACAPV-----YSHLH 181 (312)
T ss_dssp CTTC-TTS--------------------GGG--------------BCHHHHHHHHHHHH-TTCSCEEEEE-----EETTT
T ss_pred HHHh-cCC--------------------ChH--------------HHHHHHHHHHHHhC-CCcccCCccc-----CChhh
Confidence 4210 111 000 00123445677777 4444555544 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCH
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDS 356 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~ 356 (1106)
+||+++|++++.+|+|+|||||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-18 Score=193.08 Aligned_cols=132 Identities=11% Similarity=0.164 Sum_probs=99.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+++++|+.+++|++++|+|||||||||||++|+|.++|+ +|.|+++|.+. .. .+.
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~e--~~--------------~~~------ 214 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTEE--IV--------------FKH------ 214 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSCC--CC--------------CSS------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCeec--cc--------------ccc------
Confidence 799999999999999999999999999999999999997 99999998531 10 000
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
.+ +.. ..+ .| |
T Consensus 215 ----~~-~~i---------------------------------------------------------~~~-----~g--g 225 (330)
T 2pt7_A 215 ----HK-NYT---------------------------------------------------------QLF-----FG--G 225 (330)
T ss_dssp ----CS-SEE---------------------------------------------------------EEE-----CB--T
T ss_pred ----ch-hEE---------------------------------------------------------EEE-----eC--C
Confidence 00 000 000 01 8
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSG-TAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~-t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
||+||++||+||..+|++++|||||+. ++.+.|+.+. .++ +++++ +|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~--~g~~tvi~t-~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLC--SGHKGTLTT-LHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHH--TTCCCEEEE-EECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHh--cCCCEEEEE-EcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 3455666543 344 45554 45444 7889999999988853
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=159.23 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHH------HHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 994 NGLSTEQRKRLTIA------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA------~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.+||||||||++|| |||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||++. +...||+++
T Consensus 56 ~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~ii 133 (148)
T 1f2t_B 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVI 133 (148)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEEE
T ss_pred hHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEEE
Confidence 46999999999876 8999999999999999999999999999999998777899999999984 567899999
Q ss_pred EEe
Q 001291 1068 LMK 1070 (1106)
Q Consensus 1068 ~l~ 1070 (1106)
+|+
T Consensus 134 ~l~ 136 (148)
T 1f2t_B 134 RIS 136 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 995
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.67 E-value=3.6e-16 Score=178.68 Aligned_cols=78 Identities=22% Similarity=0.333 Sum_probs=65.3
Q ss_pred CCCChhhhh------HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 322 RGVSGGQKK------RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 322 rgLSGGqkq------Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++.. .+. +|++++|+ .++.+.||+|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~-~vi~~sH~-~~~~~~~d~~ 323 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIP-QVILVSHD-EELKDAADHV 323 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSS-EEEEEESC-GGGGGGCSEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCC-EEEEEECh-HHHHHhCCEE
Confidence 459999999 67788889999999999999999999999999999998754 344 45556777 5688999999
Q ss_pred EEec--CCe
Q 001291 396 ILLS--DGQ 402 (1106)
Q Consensus 396 ilL~--~G~ 402 (1106)
++|. +|.
T Consensus 324 ~~l~~~~g~ 332 (339)
T 3qkt_A 324 IRISLENGS 332 (339)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCc
Confidence 9985 554
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-18 Score=218.74 Aligned_cols=153 Identities=18% Similarity=0.175 Sum_probs=112.3
Q ss_pred eEEeeeeeeeeeC-------CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC
Q 001291 869 LVLLNGVSGAFRP-------GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS 941 (1106)
Q Consensus 869 ~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~ 941 (1106)
..+++|++|.+++ |++++|+|||||||||||++| |.... .++..+||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------------~aqiG~~Vpq~~~-- 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------------MAQMGCYVPAEVC-- 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH------------------HHTTTCCEESSEE--
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH------------------HhheeEEeccCcC--
Confidence 4689999999987 999999999999999999999 85420 1122238888753
Q ss_pred CCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeC
Q 001291 942 PFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDE 1021 (1106)
Q Consensus 942 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDE 1021 (1106)
.+|+.|++.. +. ++.+.... |.+.+|+|+++ +++|++++.+|+++||||
T Consensus 828 -~l~v~d~I~~----ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLLDE 876 (1022)
T 2o8b_B 828 -RLTPIDRVFT----RL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLVDE 876 (1022)
T ss_dssp -EECCCSBEEE----EC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEEEC
T ss_pred -CCCHHHHHHH----Hc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEEEC
Confidence 3455554411 11 11111110 12357887775 999999999999999999
Q ss_pred CCCCCCHHH-HHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 1022 PTSGLDARA-AAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 1022 PTsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||+|+|+.. ...++.+|+.+.++ |+++|++||+++. +...+|++.++. |++.
T Consensus 877 p~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 877 LGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 999999987 56688999998876 9999999999873 556789988874 5666
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-17 Score=186.91 Aligned_cols=186 Identities=13% Similarity=0.049 Sum_probs=111.9
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-EEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-RVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..++|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|... ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 356899999999999999999999999999999999998775 56 66554432211000011111111110 11
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
+.+++..+. ...++....++.+++..++. ..+ .. .
T Consensus 94 ~~~~l~~~~--------------------------------------~~~~~~~~~~~~~l~~~~l~-i~~-~~-----~ 128 (296)
T 1cr0_A 94 QSDSLKREI--------------------------------------IENGKFDQWFDELFGNDTFH-LYD-SF-----A 128 (296)
T ss_dssp GCHHHHHHH--------------------------------------HHHTHHHHHHHHHHSSSCEE-EEC-CC-----C
T ss_pred hccccccCC--------------------------------------CCHHHHHHHHHHHhccCCEE-EEC-CC-----C
Confidence 111221100 00011112233333322221 111 11 2
Q ss_pred CCChhh-hhHHHHHHHHhcCCccceeecCCC---C---CCH-HHHHHHHHHHHHHHHhcCCeEEEEEecCh--h------
Q 001291 323 GVSGGQ-KKRVTTGEMMVGPALALFMDEIST---G---LDS-STTFQIVNCFKQNIHINSGTAVISLLQPA--P------ 386 (1106)
Q Consensus 323 gLSGGq-kqRvsia~al~~~p~vllLDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~ii~i~q~~--~------ 386 (1106)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+++.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 388888 67776 999999999999999999 5 455 66678889999988755555555 55553 3
Q ss_pred --------------HHHhhcCeEEEecCCeE
Q 001291 387 --------------ETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 387 --------------~~~~~~D~vilL~~G~i 403 (1106)
.+..+||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=190.89 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=65.5
Q ss_pred CCC-ChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 322 RGV-SGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 322 rgL-SGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
..| ||||||||+||++|+.+| ++|+|||||+|||+.++..|.+.|++++. + .+|++++|... +...||++++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-~~vi~itH~~~-~~~~~d~~~~~ 470 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-RQVLVVTHLAQ-IAARAHHHYKV 470 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-SEEEEECCCHH-HHHHSSEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-CEEEEEecCHH-HHHhCCEEEEE
Confidence 447 999999999999999999 99999999999999999999999999864 3 45566777755 55689999999
Q ss_pred cCC
Q 001291 399 SDG 401 (1106)
Q Consensus 399 ~~G 401 (1106)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.8e-19 Score=196.72 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=108.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
+++|+++||+||||||||||+++|+|...+. +|. +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~--------~G~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARW--------DHH--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTS--------TTC--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcccc--------CCC--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 8999999999999999999999999964321 121 347999999988887 99999854221 1
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHH
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1038 (1106)
+.......+.+.++++.++ ....+..+ ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1122222345677888777 44333332 3599999999999999999999999999999998521 112
Q ss_pred HHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1039 RNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1039 ~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+++. + .+|+++|+.+.......+|.+.+.
T Consensus 215 ~~~~--D-~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 215 SDLF--D-FSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp GGGC--S-EEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HHhc--C-cEEEEECCHHHHHHHHHHHHHHHH
Confidence 2322 3 346677776543333456655543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-16 Score=197.28 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=105.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhh--------hCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH 940 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l--------~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~ 940 (1106)
..+++|++|.+.+|++++|+|||||||||||+++ .|...+ ..+. .++.+.+
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp--a~~~---------------~~~~~d~---- 707 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP--CESA---------------EVSIVDC---- 707 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS--EEEE---------------EEECCSE----
T ss_pred eeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccc--cccc---------------cchHHHH----
Confidence 4689999999999999999999999999999999 342211 0110 0111000
Q ss_pred CCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEE
Q 001291 941 SPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIF 1018 (1106)
Q Consensus 941 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL--~~~p~ill 1018 (1106)
++..+++.+ .. ..++|++++++..+|+++ +.+|+++|
T Consensus 708 ---------------------------------i~~~ig~~d---~l-----~~~lStf~~e~~~~a~il~~a~~~sLlL 746 (934)
T 3thx_A 708 ---------------------------------ILARVGAGD---SQ-----LKGVSTFMAEMLETASILRSATKDSLII 746 (934)
T ss_dssp ---------------------------------EEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred ---------------------------------HHHhcCchh---hH-----HHhHhhhHHHHHHHHHHHHhccCCcEEE
Confidence 000111111 01 124788888888888888 99999999
Q ss_pred EeCCCCCCCHHHHHHH-HHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1019 MDEPTSGLDARAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1019 LDEPTsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|||||+|+|+.....+ +.+++.+.+ .|+|+|++||+.+ +.+.+|++..+.+ |++...++.+
T Consensus 747 LDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~~~ 809 (934)
T 3thx_A 747 IDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTTEE 809 (934)
T ss_dssp EESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEETT
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEecCC
Confidence 9999999999888777 677777776 4999999999975 5688999888875 6777655443
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-17 Score=181.17 Aligned_cols=156 Identities=9% Similarity=-0.002 Sum_probs=97.4
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV 946 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv 946 (1106)
+++.+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999843 112222 2345689999985 5667899
Q ss_pred HHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCC
Q 001291 947 YESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 947 ~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgL 1026 (1106)
.+++.+....... +.......+.+.+.++.+ .+..+..+ ..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 9998764322111 111111122334445433 22223332 3599999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHhCCceEEEEecCc
Q 001291 1027 DARAAAIVMRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
|.. +.++ .+.+|++++|+.
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~~ 165 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDSD 165 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCHH
T ss_pred cHH--------HHHh--cCeEEEEECCHH
Confidence 764 2232 378999999973
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-17 Score=178.12 Aligned_cols=177 Identities=15% Similarity=0.054 Sum_probs=102.9
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
..+++|+|+|+++++|++++|+||||||||||+++|+|.+ |.+.++ ..++.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l-------G~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL-------GQNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH-------TGGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh-------chhccc-------ccCCceEEEeCCc-CccccC
Confidence 4567999999999999999999999999999999999975 323233 1246799999985 677899
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
+.|++.+.......... .. .+ ...+...++. |.+..+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~----~~-------------~~---------------~~~~~~~L~~--l~~~~~~~~~----- 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP----DA-------------FD---------------NDLMHRTLKN--IVEGKTVEVP----- 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG----GG-------------BC---------------HHHHHHHHHH--HHTTCCEEEC-----
T ss_pred HhHhhhhhccCCCCCCc----cc-------------cc---------------HHHHHHHHHH--HHCCCCeecc-----
Confidence 99998775432111000 00 00 0111222332 2344455554
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh-hcCeEEEecCC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN-LFDDIILLSDG 401 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~-~~D~vilL~~G 401 (1106)
.+|+||+||+.+ ++++.+|++++||||...+|.. +.++ . ..+|++.+|+...+.+ +++++ .+|
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~---~-~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM---F-HLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT---C-SEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHh---c-CeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 499999999988 5888999999999998888763 2221 2 3445555565444433 34444 556
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+ +.+++.+
T Consensus 180 ~-----~~e~~~~ 187 (245)
T 2jeo_A 180 R-----DLEQILT 187 (245)
T ss_dssp ------CHHHHHH
T ss_pred C-----CHHHHHH
Confidence 4 5566654
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-17 Score=186.58 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=121.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh----------hcccceEEEEccCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ----------ETFARISGYCEQND 938 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~~~~~~g~v~q~~ 938 (1106)
..+|+++ |.|.+|++++|+||||||||||+++|+|...++ .|.+.+.|.+... ..+.+.+.++.|.+
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~--~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~ 135 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD--IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSD 135 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS--EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC--EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECCC
Confidence 4589999 999999999999999999999999999976643 6888888865211 12345577777753
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 939 IHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 939 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
. ...+.+.-.. ....+.+.....+-. .+.+. +..||+|| ||+++| +.+|++
T Consensus 136 ~-----~~~~r~~~~~------------~~~~~ae~~~~~~~~vl~~ld~------~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 136 R-----PALERMKAAF------------TATTIAEYFRDQGKNVLLMMDS------VTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp S-----CHHHHHHHHH------------HHHHHHHHHHTTTCEEEEEEET------HHHHHHHH-HHHHHH---TTCCCC
T ss_pred C-----CHHHHHHHHH------------HHHHHHHHHHhccccHHHHHhh------HHHHHHHH-HHHHHH---cCCCCc
Confidence 2 2222221000 000011111100100 00111 23599999 899999 688887
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHh--CCc-----eEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNTVD--TGR-----TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
|+|||+.....+.++++++.+ .|. ||++++||++ ...||++++|.+ |+++..|++.
T Consensus 189 ------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~~l~ 251 (347)
T 2obl_A 189 ------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTRELA 251 (347)
T ss_dssp ------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCHHHH
T ss_pred ------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeCCHH
Confidence 999999999999999999864 477 9999999997 357999999975 7999988653
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-16 Score=175.57 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=93.4
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCcee-EEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
+|+++| +++|++++|+||||||||||+++|+|... +. .|.|.++|.+.. |++|....
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~--------- 73 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKS--------- 73 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSS---------
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCcce---------
Confidence 788999 89999999999999999999999999654 23 688998886642 22332110
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+ .. . +.+++.. ..| |++||++|..+|++|++|||| |++
T Consensus 74 --~---v~------q-----------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~ 111 (261)
T 2eyu_A 74 --I---VN------Q-----------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLE 111 (261)
T ss_dssp --E---EE------E-----------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHH
T ss_pred --e---ee------H-----------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHH
Confidence 0 00 0 0112211 123 899999999999999999999 988
Q ss_pred HHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+...+ ++. +..|.+|++++|+.+ ....+|+++.|.
T Consensus 112 ~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 112 TVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 86544 433 356999999999986 456778776553
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=8.7e-17 Score=172.88 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=92.5
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC--CCCc---eeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGG---YITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~~---~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+.|++|++++|+||||||||||+++|+|. .+++ ...+.+++++.+... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 47999999999999999999999999983 2211 123466676643210 0112222332221111 2222221
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCeEEEeCCC
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST-EQRKRLTIAVELVA-------NPSIIFMDEPT 1023 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~-Gqrqrl~iA~aL~~-------~p~illLDEPT 1023 (1106)
+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 10 01233 33444566666665 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHh-CCceEEEEecCccH---HHHHhcCeEEEEecC
Q 001291 1024 SGLDAR-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSI---DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1024 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~tH~~~~---~~~~~~D~v~~l~~g 1072 (1106)
+++|+. . ...+++.|+++++ .|+|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777654 49999999995431 256679999999874
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.5e-17 Score=183.77 Aligned_cols=181 Identities=13% Similarity=0.134 Sum_probs=125.4
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC----------CccceEEEEcC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF----------VPERTAAYISQ 233 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------~~~~~~~yv~Q 233 (1106)
...+|+++ +.|.+|+.++|+||||||||||+++|+|..+|+ .|.|.+.|++..+. ..++.+.+++|
T Consensus 58 g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~ 133 (347)
T 2obl_A 58 GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTT 133 (347)
T ss_dssp SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEEC
T ss_pred CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEEC
Confidence 45699999 999999999999999999999999999999998 89999998652110 12356788887
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccc
Q 001291 234 HDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICAD 313 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1106)
.+. ...+.+.-..... .+ .++ ....| .|
T Consensus 134 ~~~-----~~~~r~~~~~~~~----------~~--------------------------------ae~-~~~~~----~~ 161 (347)
T 2obl_A 134 SDR-----PALERMKAAFTAT----------TI--------------------------------AEY-FRDQG----KN 161 (347)
T ss_dssp TTS-----CHHHHHHHHHHHH----------HH--------------------------------HHH-HHTTT----CE
T ss_pred CCC-----CHHHHHHHHHHHH----------HH--------------------------------HHH-HHhcc----cc
Confidence 642 2233322111000 00 000 00001 01
Q ss_pred ccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCe-----EEEEEecChhHH
Q 001291 314 TMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGT-----AVISLLQPAPET 388 (1106)
Q Consensus 314 t~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~ii~i~q~~~~~ 388 (1106)
..+--+....+|+|| |||++| +++|++ |+|||+.....+.+.++++....+++ +|++.+|+..
T Consensus 162 vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-- 229 (347)
T 2obl_A 162 VLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-- 229 (347)
T ss_dssp EEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--
T ss_pred HHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--
Confidence 000001123399999 899999 578777 99999999999999998764312355 6666778776
Q ss_pred HhhcCeEEEecCCeEEEEcCHHHH
Q 001291 389 YNLFDDIILLSDGQIVYQGPRELV 412 (1106)
Q Consensus 389 ~~~~D~vilL~~G~iv~~G~~~~~ 412 (1106)
..+||++++|.+|+++..|+..+.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 578999999999999999987765
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-16 Score=193.50 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=95.9
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+..+++||+|++++|++++|+|||||||||||+++++..... . .|...... ...++++.+ .+..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q------~g~~vpa~--~~~i~~~d~---i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-Q------IGSYVPAE--EATIGIVDG---IFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-H------HTCCBSSS--EEEEECCSE---EEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-h------cCccccch--hhhhhHHHH---HHHhCChH
Confidence 356899999999999999999999999999999997521100 0 01000000 001121111 11111111
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD 1027 (1106)
+++ .. +.+.+|+|++|++.|+++ +.+|++|||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 11 124589999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHh-CCceEEEEecCccHHHHHhcC
Q 001291 1028 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFD 1064 (1106)
Q Consensus 1028 ~~~~~~i~-~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D 1064 (1106)
+.....+. .+++.+.+ .|+|||++||+++. .+.+|
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el--~~l~~ 803 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPV--CELEK 803 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH--HHHHh
Confidence 99888886 67777765 59999999999763 45554
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-15 Score=193.55 Aligned_cols=89 Identities=13% Similarity=0.107 Sum_probs=69.8
Q ss_pred CCCChhhhhHHHHHHHH--hcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 322 RGVSGGQKKRVTTGEMM--VGPALALFMDEISTGLDSSTTFQI-VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al--~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
+++|+|+++++.+|+++ +.+|+++||||||+|||+.....+ ...++.+....+. ++++++|. .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~-~vl~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGA-FCMFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCC-EEEEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCC-EEEEEcCc-HHHHHHhccccee
Confidence 45899998888888888 999999999999999999999888 4566665443344 45556777 5677899999999
Q ss_pred cCCeEEEEcCHHHH
Q 001291 399 SDGQIVYQGPRELV 412 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1106)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999988876554
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-15 Score=183.73 Aligned_cols=155 Identities=13% Similarity=0.087 Sum_probs=111.8
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1106)
++.+++|++++|+||||||||||++.++|...+. |+ +.+.|++|++. .++.++.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~----G~--------------~vi~~~~ee~~----~~l~~~~---- 328 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN----KE--------------RAILFAYEESR----AQLLRNA---- 328 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT----TC--------------CEEEEESSSCH----HHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC----CC--------------CEEEEEEeCCH----HHHHHHH----
Confidence 5689999999999999999999999999987653 32 12455666531 1122211
Q ss_pred HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 252 RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
...+. + .+. +...|+....+..+. .|||||+||
T Consensus 329 ~~~g~-----------------------~------------------~~~-~~~~g~~~~~~~~p~-----~LS~g~~q~ 361 (525)
T 1tf7_A 329 YSWGM-----------------------D------------------FEE-MERQNLLKIVCAYPE-----SAGLEDHLQ 361 (525)
T ss_dssp HTTSC-----------------------C------------------HHH-HHHTTSEEECCCCGG-----GSCHHHHHH
T ss_pred HHcCC-----------------------C------------------HHH-HHhCCCEEEEEeccc-----cCCHHHHHH
Confidence 00000 0 011 223566655555554 399999999
Q ss_pred HHHHHHHhcCCccceeecCCCCCCHH-----HHHHHHHHHHHHHHhcCCeEEEEEecCh----------hHHHhhcCeEE
Q 001291 332 VTTGEMMVGPALALFMDEISTGLDSS-----TTFQIVNCFKQNIHINSGTAVISLLQPA----------PETYNLFDDII 396 (1106)
Q Consensus 332 vsia~al~~~p~vllLDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~ii~i~q~~----------~~~~~~~D~vi 396 (1106)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.. .+.++++ ++|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 88888888887653 4555555 55555 66778999999
Q ss_pred EecCCe
Q 001291 397 LLSDGQ 402 (1106)
Q Consensus 397 lL~~G~ 402 (1106)
+|.+|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-15 Score=189.28 Aligned_cols=128 Identities=21% Similarity=0.151 Sum_probs=94.1
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++|+||+ |++++|+|||||||||||++|+|.... ...|.+. +. ....+|+++| +++.+++.|
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----pa----~~~~i~~v~~---i~~~~~~~d 630 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----PA----EEAHLPLFDG---IYTRIGASD 630 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----SS----SEEEECCCSE---EEEECCC--
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----eh----hccceeeHHH---hhccCCHHH
Confidence 4689999999 999999999999999999999984310 0112211 11 1234677666 233344444
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCeEEEeCC---C
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL--VANPSIIFMDEP---T 1023 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL--~~~p~illLDEP---T 1023 (1106)
++. .++|+|+++++.+|+++ +.+|+++||||| |
T Consensus 631 ~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGT 668 (765)
T 1ewq_A 631 DLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGT 668 (765)
T ss_dssp ----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTS
T ss_pred HHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCC
Confidence 331 13799999999999999 999999999999 9
Q ss_pred CCCCHHHH-HHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1024 SGLDARAA-AIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1024 sgLD~~~~-~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
++||..+. ..+.+.|.+ .|+|+|++||+.+
T Consensus 669 s~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 669 SSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp CHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 99999875 567777765 4899999999975
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-17 Score=176.10 Aligned_cols=145 Identities=14% Similarity=0.111 Sum_probs=110.6
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC--CCCCHHHHHHHhhhh
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS--PFVTVYESLFYSAWL 956 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~--~~~tv~e~l~~~~~~ 956 (1106)
.++|+++||+||||||||||+++|+|...+ .++|++|++.+. ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999985421 368899987765 4578988865431
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCeEEEeCCCCC-------
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ----RKRLTIAVELVANPSIIFMDEPTSG------- 1025 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq----rqrl~iA~aL~~~p~illLDEPTsg------- 1025 (1106)
. .......+.+.++++.+++.+..+.. ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~----~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 D----HPDAFDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp T----SGGGBCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred C----ChhhhhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 1 11111234466778888776655443 23589996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HhCCceEEEEecCc
Q 001291 1026 LDARAAAIVMRTVRNT-VDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1026 LD~~~~~~i~~~l~~~-~~~g~tvi~~tH~~ 1055 (1106)
||+.....+.+.+++. .++|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 45699999999974
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-16 Score=167.50 Aligned_cols=154 Identities=18% Similarity=0.121 Sum_probs=90.4
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC---C-CceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS---L-KVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~---~-~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+-+++|++++|+||||||||||+++|+|.+.+. . ...|.|.+++.... ..+.+++++|+..+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~---~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC---CHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC---CHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 579999999999999999999999999965442 0 01345555553210 01123333333222221 2222222
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
+. +..++++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 11 1123332
Q ss_pred -hhHHHHHHHHhc-------CCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEEecChh--
Q 001291 329 -KKRVTTGEMMVG-------PALALFMDEISTGLDSST------------TFQIVNCFKQNIHINSGTAVISLLQPAP-- 386 (1106)
Q Consensus 329 -kqRvsia~al~~-------~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~i~q~~~-- 386 (1106)
++.+..+++++. +|+++++|||+++||+.. ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 333444444444 899999999999999842 2367777877766544 45555677444
Q ss_pred --HHHhhcCeEEEecCCe
Q 001291 387 --ETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 387 --~~~~~~D~vilL~~G~ 402 (1106)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-16 Score=170.19 Aligned_cols=145 Identities=15% Similarity=0.106 Sum_probs=105.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCC--CCCCHHHHHHHHHH
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI--GEMTVRETLAFAAR 252 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 252 (1106)
.++|++++|+||||||||||+++|+|.+.| .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998643 478999988766 56899888655311
Q ss_pred hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh----
Q 001291 253 CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ---- 328 (1106)
Q Consensus 253 ~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq---- 328 (1106)
.. . . .....+...++.+++.+..+..+.+ +|+||
T Consensus 61 ~~---~------~----------------------------~~~~~~~~~l~~~~~~~~~~~~~~~-----~s~g~~~~~ 98 (211)
T 3asz_A 61 HP---D------A----------------------------FDLALYLEHAQALLRGLPVEMPVYD-----FRAYTRSPR 98 (211)
T ss_dssp SG---G------G----------------------------BCHHHHHHHHHHHHTTCCEEECCEE-----TTTTEECSS
T ss_pred Ch---h------h----------------------------hhHHHHHHHHHHHHcCCCcCCCccc-----CcccCCCCC
Confidence 00 0 0 0011234456777776655554433 88886
Q ss_pred hhHHHHHHHHhcCCccceeecCCCC-------CCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTG-------LDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1106)
+||+++|++++.+|+++++||||++ ||+....++.+.+++.....+.+++.+.|+
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~ 160 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQ 160 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4788999999999999999999999 999999999988876543345555444443
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.2e-16 Score=198.12 Aligned_cols=160 Identities=14% Similarity=0.066 Sum_probs=110.4
Q ss_pred ceeeeceeEEEeC-------ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEE-EEcCCCC
Q 001291 165 LTILKDVSGIVKP-------GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA-YISQHDN 236 (1106)
Q Consensus 165 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~-yv~Q~d~ 236 (1106)
..+++|+++.+++ |++++|+|||||||||||+.+ |.+.+ ...+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC
Confidence 4689999999987 999999999999999999999 88643 11344 9999752
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
.+||.|+|.. + +|+.+..+.-
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~~~- 848 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIMSG- 848 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHhhc-
Confidence 4555554410 0 0111000000
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHH-HHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ-IVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~-i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
...+|++++ ++++|++++.+|+++|||||++|+|+..... ++..++.+.... +.++++++|....+..++|++
T Consensus 849 ----~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~-g~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 849 ----ESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETI-KCRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTS-CCEEEEECCCHHHHHHTSSCS
T ss_pred ----hhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcC-CCEEEEEeCCHHHHHHhCCcc
Confidence 112666665 4999999999999999999999999988544 567788775432 455666789989888899999
Q ss_pred EEecCCeEE--EEcCHHH
Q 001291 396 ILLSDGQIV--YQGPREL 411 (1106)
Q Consensus 396 ilL~~G~iv--~~G~~~~ 411 (1106)
.++ +|++. +.|++++
T Consensus 923 ~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECED 939 (1022)
T ss_dssp SEE-EEEEEEC-------
T ss_pred eee-cCeEEEEEecCccc
Confidence 887 58887 5565543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-15 Score=187.03 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=94.4
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++|++++ ++|++++|+|||||||||||++|+|....+ . .|...... ...++++.| ++..+++.|
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~----q---~G~~vpa~--~~~i~~~~~---i~~~~~~~d 661 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA----Y---IGSYVPAQ--KVEIGPIDR---IFTRVGAAD 661 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH----T---TTCCBSSS--EEEECCCCE---EEEEEC---
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH----h---cCcccchh--cccceeHHH---HHhhCCHHH
Confidence 4589999999 999999999999999999999999842100 0 11111111 123455544 223334444
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
++..+ .+.+|+|+++ +..+...+.+|+++||||||+|+|+
T Consensus 662 ~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~ 701 (800)
T 1wb9_A 662 DLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTST 701 (800)
T ss_dssp -----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSS
T ss_pred HHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCCh
Confidence 43110 1236777765 4445556899999999999999998
Q ss_pred HHHHHH-HHHHHHHHh-CCceEEEEecCccHHHHHhcCeE
Q 001291 1029 RAAAIV-MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDEL 1066 (1106)
Q Consensus 1029 ~~~~~i-~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v 1066 (1106)
.....+ +.+++.+.+ .|+++|++||+++. .+.+|++
T Consensus 702 ~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~ 739 (800)
T 1wb9_A 702 YDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKM 739 (800)
T ss_dssp SHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHS
T ss_pred hHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhh
Confidence 766654 788888877 49999999999863 4567654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=8.7e-16 Score=171.91 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TF--ARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+|++++|+||||||||||+++|+|...+ ..|+|.+.|.+.... .+ ++.++|++|++...|..|++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~--~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN--LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 6899999999999999999999996543 258899999875321 11 235899999988888889999987
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCCCCCCHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPTSGLDAR 1029 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPTsgLD~~ 1029 (1106)
+..... .+ ..+++..|+.+..+.. ++..++||++||||++.+|+ ++.|| |+++
T Consensus 179 ~~~~~~--~d----------~~llDt~G~~~~~~~~--------~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 179 AMKARG--YD----------LLFVDTAGRLHTKHNL--------MEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HHHHHT--CS----------EEEECCCCCCTTCHHH--------HHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred HHHhCC--CC----------EEEecCCCCCCchHHH--------HHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 642110 00 0112222332221111 45566999999999999999 44555 4444
Q ss_pred HHHHHHHHHHHHHhC-CceEEEEecCcc
Q 001291 1030 AAAIVMRTVRNTVDT-GRTVVCTIHQPS 1056 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~-g~tvi~~tH~~~ 1056 (1106)
..+++.++++.+. |.|+|++||+..
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTTS
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 4455556665543 899999999853
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.4e-16 Score=173.36 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=83.9
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC-CCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
+++.++++++|+| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.+++++|.+.....+|
T Consensus 9 ~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 9 HRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp ---------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCEEEE
T ss_pred CCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 4567999999998 99999999999999999986 33 2356 7777765433212345789999877777788
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS- 1024 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs- 1024 (1106)
++|+..++.... . .+..+..++.+.+. .+... .++|+|||||+.+|||++ +|++||||+
T Consensus 80 v~Dt~g~~~~~~-~----~e~~~~l~~~l~~~------~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~ 139 (301)
T 2qnr_A 80 VVDTPGYGDAIN-C----RDCFKTIISYIDEQ------FERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGH 139 (301)
T ss_dssp EEEEC----------------CTTHHHHHHHH------HHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSS
T ss_pred hhhhhhhhhhcC-c----HHHHHHHHHHHHHH------HHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCccc
Confidence 888876653221 0 00001111122111 12221 258999999999999886 999999998
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CceEEEEecCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1056 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~ 1056 (1106)
|||+... +.++++.+. +.++|++.||+.
T Consensus 140 ~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 140 GLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred CCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 4999873 555555443 788999999974
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-14 Score=141.91 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred CCCCChhhhhHHHHH------HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 321 RRGVSGGQKKRVTTG------EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia------~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
...||||||||++|| ++++.+|++++|||||+|||+.++..+.+.++++.. .+.+ |+.++|+. ++.+++|+
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iiivsH~~-~~~~~~d~ 131 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQ-VILVSHDE-ELKDAADH 131 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSE-EEEEESCG-GGGGGCSE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCE-EEEEEChH-HHHHhCCE
Confidence 345999999999876 899999999999999999999999999999998754 3444 55566776 67889999
Q ss_pred EEEe--cCCeE
Q 001291 395 IILL--SDGQI 403 (1106)
Q Consensus 395 vilL--~~G~i 403 (1106)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 46643
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-17 Score=169.27 Aligned_cols=158 Identities=21% Similarity=0.249 Sum_probs=104.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARCQGV 256 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 256 (1106)
|++++|+||||||||||+++|+|.+. + +| |.++|....+.. .++.++|++|+. ... ++++. +..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l~---~~~-- 65 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPLS---RVG-- 65 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEEE---ECC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehhh---ccc--
Confidence 78999999999999999999999987 6 78 989887764332 256799999963 111 11110 000
Q ss_pred CcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH-HH
Q 001291 257 GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT-TG 335 (1106)
Q Consensus 257 ~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs-ia 335 (1106)
..++ + ...+..+|. ....+|||||+++. ++
T Consensus 66 ------------------~~~~-~-----------------------------~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 66 ------------------LEPP-P-----------------------------GKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp ------------------CCCC-S-----------------------------SSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred ------------------ccCC-c-----------------------------cccccccce-EEEcchHHHHHHHHHHh
Confidence 0000 0 001123442 23359999999984 44
Q ss_pred H---HHhcCCccceeec--CCCCCCHHHHHHHHHHHHHHHHhcCCeEEE---EEecChhHHHhhcCeEEEecCCeEEEE
Q 001291 336 E---MMVGPALALFMDE--ISTGLDSSTTFQIVNCFKQNIHINSGTAVI---SLLQPAPETYNLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 336 ~---al~~~p~vllLDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii---~i~q~~~~~~~~~D~vilL~~G~iv~~ 406 (1106)
+ |+..+|++++||| |+..+|......+.+.++ ...++|+ +++|+.+ ..+.|+|..+.+|+++.-
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~-----~~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~ 168 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS-----TPGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNV 168 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH-----CSSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEEC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh-----CCCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEe
Confidence 4 5799999999999 898899876555555544 2344553 3336653 356788888888888764
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.8e-16 Score=176.13 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=98.1
Q ss_pred eeeece-eEEEeCceEEEEEcCCCCCHHHHHHHHhCCC--CCC-CCceeE-EEECCccCCCCCccceEEEEcCCCCCCCC
Q 001291 166 TILKDV-SGIVKPGRLTLLLGPPSSGKTTLLLALAGKL--DPS-LKVSGR-VTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1106)
Q Consensus 166 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~-~~~~G~-V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
..|+++ ++.+++|++++|+||||||||||++.|++.. +|+ ....|+ |++++.+. + ..+.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~--~-~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--F-RPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC--C-CHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC--C-CHHHHHHHHHHcCCCHH
Confidence 356665 6899999999999999999999999999987 443 011367 78887543 1 12345566665433322
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
++.||+.+...
T Consensus 195 -~v~~ni~~~~~-------------------------------------------------------------------- 205 (349)
T 1pzn_A 195 -EVLKHIYVARA-------------------------------------------------------------------- 205 (349)
T ss_dssp -HHGGGEEEEEC--------------------------------------------------------------------
T ss_pred -HHhhCEEEEec--------------------------------------------------------------------
Confidence 44444332100
Q ss_pred CCCCChhhhhHHHHHHHHh-------cCCccceeecCCCCCCHHH------------HHHHHHHHHHHHHhcCCeEEEEE
Q 001291 321 RRGVSGGQKKRVTTGEMMV-------GPALALFMDEISTGLDSST------------TFQIVNCFKQNIHINSGTAVISL 381 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~-------~~p~vllLDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~i 381 (1106)
--|++|++++.++++++ .+|+++++||||++||+.. ..++++.|+++++..+ ++|+++
T Consensus 206 --~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 206 --FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp --CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred --CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 01344455555555444 7899999999999999852 3556666777765444 455556
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 382 LQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 382 ~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
+|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676665555566677777787765544
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-16 Score=166.14 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=105.3
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPP 960 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~ 960 (1106)
|++++|+||||||||||+++|+|... . +| |.++|++..+ ...++.+||++|+.. ... +++ +.+...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~--~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~~- 67 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S--SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGLE- 67 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H--TT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c--CC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hccccc-
Confidence 78999999999999999999999643 1 46 7777766533 234677899999751 111 111 111100
Q ss_pred CCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCeEEEeC--CCCCCCHHHHHHH
Q 001291 961 EVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL-TIAV---ELVANPSIIFMDE--PTSGLDARAAAIV 1034 (1106)
Q Consensus 961 ~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl-~iA~---aL~~~p~illLDE--PTsgLD~~~~~~i 1034 (1106)
.. + ...+..++..+ ..+|+|||+++ ++++ |++.+|+|||||| ||..+|......+
T Consensus 68 -~~---------------~--~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l 128 (189)
T 2i3b_A 68 -PP---------------P--GKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAV 128 (189)
T ss_dssp -CC---------------S--SSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHH
T ss_pred -CC---------------c--cccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHH
Confidence 00 0 00111222222 24899999988 4455 6789999999999 8999999866666
Q ss_pred HHHHHHHHhCCceEEE----EecCccHHHHHhcCeEEEEecCCEEEEEecCCCc--hhHHHHHHH
Q 001291 1035 MRTVRNTVDTGRTVVC----TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHH--SCHLISYFE 1093 (1106)
Q Consensus 1035 ~~~l~~~~~~g~tvi~----~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~--~~~~~~yf~ 1093 (1106)
.++++ ...++|+ ++|+.+. ...|++..+. +|+++....-.++ ..+++++.+
T Consensus 129 ~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 129 RQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp HHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSSSGGGHHHHHHHHHT
T ss_pred HHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChHhHHHHHHHHHHHHH
Confidence 55554 4445553 3498641 2446655554 5787776543322 344555543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-15 Score=164.04 Aligned_cols=133 Identities=17% Similarity=0.257 Sum_probs=93.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
++|+++| +++|++++|+|||||||||||++|+|.++|+ .+|+|.++|.++. |++|+...+ +
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~---------~~~~~~~~~----v-- 75 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE---------YVFKHKKSI----V-- 75 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCC---------SCCCCSSSE----E--
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcce---------eecCCccee----e--
Confidence 4899999 8999999999999999999999999998762 1699999987643 333321000 0
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
.+ +.+|++. ..+
T Consensus 76 -------~q-------------------------------------------------~~~gl~~-----------~~l- 87 (261)
T 2eyu_A 76 -------NQ-------------------------------------------------REVGEDT-----------KSF- 87 (261)
T ss_dssp -------EE-------------------------------------------------EEBTTTB-----------SCH-
T ss_pred -------eH-------------------------------------------------HHhCCCH-----------HHH-
Confidence 00 0012211 012
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9988765543 2 22 3445 455556644 6788999988854
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-14 Score=166.07 Aligned_cols=74 Identities=16% Similarity=0.276 Sum_probs=63.4
Q ss_pred CCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 323 GVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
.||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++.+++++|. .+....||+++.|
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEEE
Confidence 49999999999999999 68999999999999999999999999987532 24555666776 5678899999998
Q ss_pred c
Q 001291 399 S 399 (1106)
Q Consensus 399 ~ 399 (1106)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-15 Score=173.89 Aligned_cols=142 Identities=20% Similarity=0.183 Sum_probs=93.9
Q ss_pred eeee-eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC--CC--ceeEEE-EEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 872 LNGV-SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK--TG--GYITGD-IRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 872 L~~v-s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~--~~--~~~~G~-i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
|+.+ .+.|++|++++|+||||||||||++.|++.. ++ |...|. +++++.+.. .++.+++++|...+.+. +
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-H
Confidence 4444 5899999999999999999999999999853 21 111256 888886531 11224444554332211 2
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCeEE
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-------ANPSIIF 1018 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-------~~p~ill 1018 (1106)
+.+|+.+. +. .-|.+|+|++.++++++ .+|++|+
T Consensus 196 v~~ni~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 22222111 00 02567788888888887 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHh-CCceEEEEecCcc
Q 001291 1019 MDEPTSGLDARA------------AAIVMRTVRNTVD-TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1019 LDEPTsgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~tH~~~ 1056 (1106)
+||||+++|+.. ...+++.|+++++ .|+|||+|+|...
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 999999999852 3455666666654 5899999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-15 Score=158.40 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=104.2
Q ss_pred EEeeeeee-eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccc---eEEEEccCCCCCCCCC
Q 001291 870 VLLNGVSG-AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFAR---ISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~g~v~q~~~~~~~~t 945 (1106)
+.|+++.+ .+++|++++|+||||||||||++.|++.... ..|.+.+.+.+.......+ ..++.+|....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 35788885 8999999999999999999999999974321 1233443332221111000 01111110000
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--eEEEeCCC
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPS--IIFMDEPT 1023 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~--illLDEPT 1023 (1106)
+++ . .++.....++ .. .. ....|.++.++...+.+...+|+ +|++||||
T Consensus 83 --~~~------~------------~~~~~~~~~~-~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KKL------I------------IIDALMKEKE-DQ---WS-----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TTE------E------------EEECCC-----CT---TB-----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CCE------E------------EEeccccccC-ce---ee-----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000 0 0000000000 00 00 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHh-CCceEEEEecCcc-------HHHHHhcCeEEEEecC
Q 001291 1024 SGL--DARAAAIVMRTVRNTVD-TGRTVVCTIHQPS-------IDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1024 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~-------~~~~~~~D~v~~l~~g 1072 (1106)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+...||++++|++.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99889999999999864 5999999999972 1266789999999853
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-15 Score=169.57 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=100.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHHH
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---------ERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
+|++++|+||||||||||++.|+|.+.|+ +|+|.++|.++..... ++.++|++|++...|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 69999999999999999999999999987 8999999988643221 24589999998888889999999
Q ss_pred HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChh
Q 001291 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGG 327 (1106)
.++... +. +. .+++..|+.+..+.. ++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~~~--------~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKHNL--------MEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCHHH--------HHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchHHH--------HHHH
Confidence 875321 10 00 001112322211111 4555
Q ss_pred hhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC
Q 001291 328 QKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP 384 (1106)
Q Consensus 328 qkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~ 384 (1106)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.++++ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 68999999999999994444 455555555566666554434555554 5554
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-14 Score=180.21 Aligned_cols=80 Identities=8% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHH-HHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE-ecC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIV-NCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL-LSD 400 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil-L~~ 400 (1106)
.+|+|++|++.|+++ +.+|+++|||||++|||+.....+. ..++.+....+ .++++++|+. ++.+++|+.-- +.+
T Consensus 735 tfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g-~tvl~vTH~~-el~~l~~~~~~~v~n 811 (918)
T 3thx_B 735 TFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVK-SLTLFVTHYP-PVCELEKNYSHQVGN 811 (918)
T ss_dssp CHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTC-CEEEEECSCG-GGGGHHHHTTTTEEE
T ss_pred HhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcC-CeEEEEeCcH-HHHHHHhhcccceEE
Confidence 489999999999998 8999999999999999999999987 66666654334 4555567774 45566665421 334
Q ss_pred CeEEE
Q 001291 401 GQIVY 405 (1106)
Q Consensus 401 G~iv~ 405 (1106)
+++.+
T Consensus 812 ~~~~~ 816 (918)
T 3thx_B 812 YHMGF 816 (918)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-15 Score=169.53 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=80.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC-CCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK-LDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
++.+++++++.| +|+||||||||||++.|.|. +.|. +| |.++|.++......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 456999999998 99999999999999999997 7676 78 8888876643222356899999888888899
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|.||..++..... .+. ....++.+. ...+..+ +
T Consensus 80 v~Dt~g~~~~~~~-------------~e~-----------------------~~~l~~~l~------~~~~~~~-----~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-------------RDC-----------------------FKTIISYID------EQFERYL-----H 112 (301)
T ss_dssp EEEEC-----------------------------------------------CTTHHHHHH------HHHHHHH-----H
T ss_pred hhhhhhhhhhcCc-------------HHH-----------------------HHHHHHHHH------HHHHHHH-----H
Confidence 9999887542210 000 000111111 1112333 3
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPA 385 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~ 385 (1106)
++|||||||+.+||+++ ++++||||++ ||+... +.++++.. ....+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~-~~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHN-KVNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTT-TSCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHh-cCCEEEEEEeCCC
Confidence 49999999999988875 9999999985 999873 44555432 2245555555654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-15 Score=187.57 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=110.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCC-CCCceeEEEECCccCCC------CCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLDP-SLKVSGRVTYNGHNMDE------FVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~-~~~~~G~V~~~G~~~~~------~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
++|+|||||||||||++|+|...| + +|.|+++|.++.. ...++.++|++|+..+++.+||+|++.++...
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~---sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~ 124 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRG---SGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA 124 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC----------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCC---CCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999877 5 8999999988521 12346799999999999999999999886532
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
.+... .++| ++++.
T Consensus 125 ~~~~~---------------------------------------------------------------~~~s---~~~i~ 138 (608)
T 3szr_A 125 IAGEG---------------------------------------------------------------MGIS---HELIT 138 (608)
T ss_dssp HHCSS---------------------------------------------------------------SCCC---SCCEE
T ss_pred hcCCc---------------------------------------------------------------cccc---hHHHH
Confidence 21000 0011 11122
Q ss_pred HHHHHhcCCccceeecC------CCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh----HHHhh---c-----CeE
Q 001291 334 TGEMMVGPALALFMDEI------STGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP----ETYNL---F-----DDI 395 (1106)
Q Consensus 334 ia~al~~~p~vllLDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~----~~~~~---~-----D~v 395 (1106)
++.+....|+++++||| |+|||+....++.+.++++.......+++.++|+.+ ++..+ . ..|
T Consensus 139 l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI 218 (608)
T 3szr_A 139 LEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTI 218 (608)
T ss_dssp EEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceE
Confidence 22222357999999999 999999999999999998665555666777777654 22222 2 457
Q ss_pred EEecCCeEEEEcCHHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1106)
+|+.++..+..|+.+++.+
T Consensus 219 ~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 219 GILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp EEEECGGGSSSSSTTCCCC
T ss_pred EEecchhhcCcccHHHHHH
Confidence 8888988888887655544
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.46 E-value=9.8e-14 Score=154.10 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=100.1
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.+++|++++|+||||||||||++.|++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 588999999999999999999999997332 2333 22433211 2245676554321 01111111 111
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC--CCCHHHH---H
Q 001291 958 LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS--GLDARAA---A 1032 (1106)
Q Consensus 958 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs--gLD~~~~---~ 1032 (1106)
. +... ...+++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|.... .
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245677888877665543 346999998765 68889999999999999 9997444 7
Q ss_pred HHHHHHHHHH-hCCceEEEEecCcc
Q 001291 1033 IVMRTVRNTV-DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1033 ~i~~~l~~~~-~~g~tvi~~tH~~~ 1056 (1106)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888888886 45999999999875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-14 Score=181.02 Aligned_cols=132 Identities=16% Similarity=0.141 Sum_probs=95.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-CCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. . ..+..++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v------p--a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV------P--AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB------S--SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee------e--hhccceeeHHH---hhccCCH
Confidence 4688999998 99999999999999999999999753 33 45431 0 01245777766 4555566
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.|++. .|
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 55542 24
Q ss_pred CChhhhhHHHHHHHH--hcCCccceeecC---CCCCCHHHH-HHHHHHHHHHHHhcCCeEEEEEecChhHHHhhc
Q 001291 324 VSGGQKKRVTTGEMM--VGPALALFMDEI---STGLDSSTT-FQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392 (1106)
Q Consensus 324 LSGGqkqRvsia~al--~~~p~vllLDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 392 (1106)
+|+|+++++.+++++ +.+|+++||||| |++||..+. ..+++.|++ .+.+ ++.++|.... .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~-vl~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAY-TLFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCE-EEEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCE-EEEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 567777764 3444 4556776544 4444
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.9e-15 Score=167.13 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=84.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
+|+++ .+.+|++++|+||||||||||+++|+|...+. ..|.|...+.+... ......+++.|...
T Consensus 114 ~l~~l--~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~~~~i~t~ed~~e~-~~~~~~~~v~q~~~----------- 178 (356)
T 3jvv_A 114 VFKRV--SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNT-KYHHILTIEDPIEF-VHESKKCLVNQREV----------- 178 (356)
T ss_dssp HHHHH--HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHH-CCCEEEEEESSCCS-CCCCSSSEEEEEEB-----------
T ss_pred HHHHH--HhCCCCEEEEECCCCCCHHHHHHHHHhcccCC-CCcEEEEccCcHHh-hhhccccceeeeee-----------
Confidence 34443 67899999999999999999999999954321 12344332222110 00111122222110
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
+ ...++..+ +||+||..+|++|++|||| |.++
T Consensus 179 --------------------------------------~---~~~~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 179 --------------------------------------H---RDTLGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp --------------------------------------T---TTBSCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred --------------------------------------c---cccCCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 01133333 9999999999999999999 7666
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
...+ .+++.+|.|||+|+|+.+. . +.+||++.|.
T Consensus 211 ~~~~----~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~ 244 (356)
T 3jvv_A 211 IRLA----LTAAETGHLVFGTLHTTSA-A-KTIDRVVDVF 244 (356)
T ss_dssp HHHH----HHHHHTTCEEEEEESCSSH-H-HHHHHHHHTS
T ss_pred HHHH----HHHHhcCCEEEEEEccChH-H-HHHHHHhhhc
Confidence 4443 3445679999999999873 3 7788887774
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-13 Score=138.34 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=65.2
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 994 NGLSTEQRKRLTIAVELVA----NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~----~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++.+ +.++|++||+.. +.+.||+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEEE
Confidence 4699999999999999974 4699999999999999999999999998864 578999999963 57889999865
Q ss_pred e
Q 001291 1070 K 1070 (1106)
Q Consensus 1070 ~ 1070 (1106)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-15 Score=155.75 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=93.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC---CceeEEEEEEcCc
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYITGDIRISGY 920 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~ 920 (1106)
+.++|+++.+.. .++++ +.+.+|..++|+|+||||||||++.|+|... ..+..|.+.+.+.
T Consensus 4 l~~~~~~~~~~~--------------~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~ 67 (210)
T 1pui_A 4 LNYQQTHFVMSA--------------PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL 67 (210)
T ss_dssp -------CEEEE--------------SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE
T ss_pred hhhhhhhheeec--------------CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE
Confidence 466777766641 25666 8899999999999999999999999999651 0122343322110
Q ss_pred c-CC-hhcccceEEEEccCCCCCCCCC---HHHHHHHhhh-hc--------CCCCCChHHHHHHHHHHHHHcCCCccc-c
Q 001291 921 P-KK-QETFARISGYCEQNDIHSPFVT---VYESLFYSAW-LR--------LPPEVNSETRKMFIEEVMELVELKPLR-Q 985 (1106)
Q Consensus 921 ~-~~-~~~~~~~~g~v~q~~~~~~~~t---v~e~l~~~~~-~~--------~~~~~~~~~~~~~v~~~l~~~~l~~~~-~ 985 (1106)
- .. ...+....|+.... .+... .+..+.+... .+ .+........+..+.+.++..++..+. .
T Consensus 68 ~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~ 144 (210)
T 1pui_A 68 FEVADGKRLVDLPGYGYAE---VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLL 144 (210)
T ss_dssp EEEETTEEEEECCCCC---------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEecCCEEEEECcCCcccc---cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEE
Confidence 0 00 00000001111100 00000 0111111000 00 000000111223345566666665321 2
Q ss_pred cccCCCCCCCCCHHHHHH-HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce
Q 001291 986 SLVGLPGVNGLSTEQRKR-LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1047 (1106)
Q Consensus 986 ~~~~~~g~~~LS~Gqrqr-l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1047 (1106)
.. ...+|+||||| +..+++++.+|.++++|||||++|..+...+++.|.++..+|.|
T Consensus 145 nK-----~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 145 TK-----ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EC-----GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred ec-----ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 22 13489999999 89999999999999999999999999999999999988766544
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.1e-13 Score=146.37 Aligned_cols=171 Identities=16% Similarity=0.097 Sum_probs=106.3
Q ss_pred ceeeeceeE-EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSG-IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~-~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+.|+++.+ -+++|++++|+||||||||||++.|++...+. .|.|.|.+.+ . +.
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~----------------~------~~ 63 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTE----------------E------SR 63 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESS----------------S------CH
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcc----------------c------CH
Confidence 457888885 89999999999999999999999999887553 4555554321 1 22
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.+........ +... + +... .+. . .++.....++ ...+ ...
T Consensus 64 ~~~~~~~~~~-~~~~--~---~~~~----------~~~------~---------~~~~~~~~~~-----~~~~----~~~ 103 (235)
T 2w0m_A 64 DSIIRQAKQF-NWDF--E---EYIE----------KKL------I---------IIDALMKEKE-----DQWS----LVN 103 (235)
T ss_dssp HHHHHHHHHT-TCCC--G---GGBT----------TTE------E---------EEECCC---------CTTB----CSS
T ss_pred HHHHHHHHHh-cchH--H---HHhh----------CCE------E---------EEeccccccC-----ceee----ecC
Confidence 2111110010 1000 0 0000 000 0 0000000001 0001 122
Q ss_pred CChhhhhHHHHHHHHhcCCc--cceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecCh--------hHHHhh
Q 001291 324 VSGGQKKRVTTGEMMVGPAL--ALFMDEISTGL--DSSTTFQIVNCFKQNIHINSGTAVISLLQPA--------PETYNL 391 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~--vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~--------~~~~~~ 391 (1106)
.|.+|.++...+.+...+|+ ++++||||+++ |+....++++.|+++++.. +.+|+.++|.. +.+..+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~~ 182 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEHV 182 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHHH
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhee
Confidence 58999988888877778999 99999999888 9999999999999887644 45666677776 558889
Q ss_pred cCeEEEecCC
Q 001291 392 FDDIILLSDG 401 (1106)
Q Consensus 392 ~D~vilL~~G 401 (1106)
||+|++|...
T Consensus 183 ~d~vi~l~~~ 192 (235)
T 2w0m_A 183 ADGIIRFRRM 192 (235)
T ss_dssp CSEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9999999754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.9e-13 Score=163.42 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=69.6
Q ss_pred CC-CHHHHHHHHHHHHHhcCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEec
Q 001291 995 GL-STEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 995 ~L-S~Gqrqrl~iA~aL~~~p--~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
.| ||||||||+||++|+.+| ++|||||||+|||+.++..|.+.|+++++ |+|||+|||+++ +...||++++|.+
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~~ 472 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVEK 472 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEec
Confidence 47 999999999999999999 99999999999999999999999999987 899999999985 4567999999964
Q ss_pred C
Q 001291 1072 G 1072 (1106)
Q Consensus 1072 g 1072 (1106)
+
T Consensus 473 ~ 473 (517)
T 4ad8_A 473 Q 473 (517)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-13 Score=150.41 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.+.. ....+.|+..++. . +.+. .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~------~-~~~~--~r~ 87 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDP------P-TAIH--HRL 87 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSC------H-HHHH--HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCC------H-HHHH--HHH
Confidence 489999999999999999999999998653 3554 3343321 1346788877652 2 1111 011
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
...+. . . .....+.+++.+++.+..+..+. .+|+||++++
T Consensus 88 ~~~g~-------------~------~---------------~~~~~~~~~~~l~l~~~~~~~~~-----~ls~g~~~~i- 127 (279)
T 1nlf_A 88 HALGA-------------H------L---------------SAEERQAVADGLLIQPLIGSLPN-----IMAPEWFDGL- 127 (279)
T ss_dssp HHHHT-------------T------S---------------CHHHHHHHHHHEEECCCTTSCCC-----TTSHHHHHHH-
T ss_pred HHHHh-------------h------c---------------ChhhhhhccCceEEeecCCCCcc-----cCCHHHHHHH-
Confidence 00000 0 0 00123446777888776665554 3999998876
Q ss_pred HHHHHhcCCccceeecCCC--CCCHHHH---HHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 334 TGEMMVGPALALFMDEIST--GLDSSTT---FQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 334 ia~al~~~p~vllLDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.+ |+.++|....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~ 183 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKG 183 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC---
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCc
Confidence 57888999999999999 9997544 77888888887655555 4556666544
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-14 Score=174.99 Aligned_cols=141 Identities=14% Similarity=0.160 Sum_probs=94.1
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC------hhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK------QETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
++++. +||+||||||||||+++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+.+..||+|++
T Consensus 43 l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 43 LALPA---IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp CCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred ccCCe---EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 44443 999999999999999999997543 14799999987631 124567899999999888889999998
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC------CC
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP------TS 1024 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP------Ts 1024 (1106)
.+........ + . ++| ++++.++.+...+|+++|+||| |+
T Consensus 119 ~~~~~~~~~~------------------~-~-------------~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~ 163 (608)
T 3szr_A 119 NKAQNAIAGE------------------G-M-------------GIS---HELITLEISSRDVPDLTLIDLPGITRVAVG 163 (608)
T ss_dssp HHHHHHHHCS------------------S-S-------------CCC---SCCEEEEEEESSSCCEEEEECCC------C
T ss_pred HHHHHHhcCC------------------c-c-------------ccc---hHHHHHHhcCCCCCceeEeeCCCccccccC
Confidence 7643211000 0 0 011 0112222233458999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHhC--CceEEEEecCcc
Q 001291 1025 GLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPS 1056 (1106)
Q Consensus 1025 gLD~~~~~~i~~~l~~~~~~--g~tvi~~tH~~~ 1056 (1106)
|||+..+..+.++++++..+ +.++++++|+.+
T Consensus 164 ~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 164 NQPADIGYKIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp CSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCceEEEeccch
Confidence 99999999999999997543 677889999876
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.6e-14 Score=168.12 Aligned_cols=163 Identities=12% Similarity=0.104 Sum_probs=92.7
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++++++.+ +++.+++|++|+| +|+|+||||||||+++|+|........|.+.+++.+
T Consensus 12 l~~~~l~~~y-------------~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~-- 70 (418)
T 2qag_C 12 VGFANLPNQV-------------YRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK-- 70 (418)
T ss_dssp ---CCCCCCT-------------TTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-------
T ss_pred EEEEecceeE-------------CCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc--
Confidence 5667766544 2345899999998 999999999999999999965321112322222211
Q ss_pred hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 924 QETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 924 ~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
....+.+++++|.+...+.+|++|++.++.... .... ...+.+.+ +. .++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~---~~~i~~~i------~~--------~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNC---WQPVIDYI------DS--------KFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC--------------------CHHHHHHH------HH--------HHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhh---HHHHHHHH------HH--------HHHHHHHHH
Confidence 112345799999887777789999887654321 0000 11121111 11 256677889
Q ss_pred HHHHHHHhcCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1004 LTIAVELVANPS---IIFMDEPT-SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1004 l~iA~aL~~~p~---illLDEPT-sgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
++|||+++.+|+ +|++|||| .|||+... ++++.+. .+.+||+|+|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 999999999999 99999999 69998763 3344444 3788888887543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=5.6e-14 Score=175.87 Aligned_cols=156 Identities=12% Similarity=0.043 Sum_probs=100.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++|+|+. ++|++++|+|||||||||||++|+|..... . . |..+.. ....++++.| ++..+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~-q-~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA-Y-I------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH-T-T------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH-h-c------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999964221 0 1 211110 0124555554 45555666
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
|++..+. ..+
T Consensus 661 d~l~~~~----------------------------------------------------------------------stf 670 (800)
T 1wb9_A 661 DDLASGR----------------------------------------------------------------------STF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhhh----------------------------------------------------------------------hhh
Confidence 6553311 125
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHH-HHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI-VNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|+++++ ++.+...+.+|+++|||||++|+|+.....+ ...++.+.... +.+++.++|... ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~-g~~vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKI-KALTLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTT-CCEEEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhcc-CCeEEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444456899999999999999998877775 56677665423 445555677764 4568998877788887
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-14 Score=163.54 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=110.5
Q ss_pred ceEEeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 868 KLVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
+.+ |+++|+++++|++ +||+||||||||||+++|+|..- .|.. +.... ....++.++|++|++.+.+.+|
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~~--~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHTQ--PGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CC--SSCEEEEEEEEEEC--CEEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCCC--ccceEeeEEEEeecCccccccc
Confidence 345 9999999999999 99999999999999999999642 1211 11111 1122456899999988877889
Q ss_pred HHHHHHHhhhhcCCCCCChH----HHHHHHHHHHHHc-CCC----cccccc----cC--CCCCCCCCHHHHHHHHHHHHH
Q 001291 946 VYESLFYSAWLRLPPEVNSE----TRKMFIEEVMELV-ELK----PLRQSL----VG--LPGVNGLSTEQRKRLTIAVEL 1010 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~----~~~~~v~~~l~~~-~l~----~~~~~~----~~--~~g~~~LS~Gqrqrl~iA~aL 1010 (1106)
|.|++.|+.... ...... ..+...++.|+.. ++. ...+.. +. .|...+|+..+ +.|+++|
T Consensus 99 v~D~~~~g~~~~--~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L 173 (427)
T 2qag_B 99 IVSTVGFGDQIN--KEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKL 173 (427)
T ss_dssp EEEEECCCC-CC--HHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHT
T ss_pred hhhhhhhhhccc--cchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHH
Confidence 999886653210 000000 1223344555554 432 111211 10 12223577766 7899999
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCceEEEEecC
Q 001291 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQ 1054 (1106)
Q Consensus 1011 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~-~~~~g~tvi~~tH~ 1054 (1106)
..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 174 ~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 174 DSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred hhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 999999999999999999999999999986 77789999988864
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.5e-12 Score=135.72 Aligned_cols=153 Identities=19% Similarity=0.148 Sum_probs=97.5
Q ss_pred Eeeeee-eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 871 LLNGVS-GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 871 ~L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.|+++. +.+++|++++|+||||||||||++.|++ ..+ .+.++++..+ . .+. +.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~~-----------------~----~~~-~~ 61 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTEG-----------------G----FSP-ER 61 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESSC-----------------C----CCH-HH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECCC-----------------C----CCH-HH
Confidence 466665 4799999999999999999999999998 221 1233333221 1 111 11
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCeEEEeCCCCCC
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTE--QRKRLTIAVELVAN-PSIIFMDEPTSGL 1026 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~G--qrqrl~iA~aL~~~-p~illLDEPTsgL 1026 (1106)
+.- .... ..... +++++.+.+. .+|++ +++++..+++++.+ |+++++||||+.+
T Consensus 62 ~~~--~~~~-~~~~~-------~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l 118 (220)
T 2cvh_A 62 LVQ--MAET-RGLNP-------EEALSRFILF-------------TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHY 118 (220)
T ss_dssp HHH--HHHT-TTCCH-------HHHHHHEEEE-------------CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCT
T ss_pred HHH--HHHh-cCCCh-------HHHhhcEEEE-------------ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHh
Confidence 110 0000 01111 1223222111 13444 46788999999986 9999999999999
Q ss_pred CHHH--------HHHHHHHHHHHHhC-CceEEEEecCccH------------HHHHhcCeEEEEecC
Q 001291 1027 DARA--------AAIVMRTVRNTVDT-GRTVVCTIHQPSI------------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1027 D~~~--------~~~i~~~l~~~~~~-g~tvi~~tH~~~~------------~~~~~~D~v~~l~~g 1072 (1106)
|+.. ...+++.|++++++ |+|||+++|.... .+...||.+++|++.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 119 RAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9733 24456667777654 8999999997641 356789999999864
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-14 Score=151.28 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=83.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCH----HHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTV----YESLFY 952 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv----~e~l~~ 952 (1106)
-..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.... .++.++|++|++..++.+++ .|++.+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 3567999999999999999999999999764323678899888765432 23457888886432222221 111100
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
. ... .+.| ++. +.+++..++++||| ||+.++.
T Consensus 90 ~-------------------------------~~~------yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-------------------------------GNY------YGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-------------------------------TEE------EEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-------------------------------hcc------CCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 000 0111 221 34556678999999 9999999
Q ss_pred HHHHHHHHHHhCCceEEEEecCcc
Q 001291 1033 IVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1033 ~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
.+++.+. +|.||++++|+++
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHH
T ss_pred HHHHHcc----CCEEEEEECCCHH
Confidence 9998875 5899999999976
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=6.7e-14 Score=149.32 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=97.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH----HHHHHH
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV----RETLAF 249 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~f 249 (1106)
..++|++++|+||||||||||+++|+|.++|+ ...|.|.+++.+.... .++.++|++|++..|+.+|+ .|++.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 57899999999999999999999999998863 3589999998765432 23468899997543333332 111111
Q ss_pred HHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhh
Q 001291 250 AARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQK 329 (1106)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqk 329 (1106)
.|. +.|-.+
T Consensus 90 ------------------------------------------------------------------~~~-----~yg~~~ 98 (219)
T 1s96_A 90 ------------------------------------------------------------------FGN-----YYGTSR 98 (219)
T ss_dssp ------------------------------------------------------------------TTE-----EEEEEH
T ss_pred ------------------------------------------------------------------Hhc-----cCCCCH
Confidence 011 111112
Q ss_pred hHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcCH
Q 001291 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPR 409 (1106)
Q Consensus 330 qRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~ 409 (1106)
++ .+.++..++++||| ||+.++.++.+.+. .+.+|++++|+..++.. |+ +..| .++.
T Consensus 99 ~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~~ 155 (219)
T 1s96_A 99 EA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDSE 155 (219)
T ss_dssp HH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSCH
T ss_pred HH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCCH
Confidence 22 23445557999999 99999999988664 35667777787777655 42 7777 6788
Q ss_pred HHHHHHH
Q 001291 410 ELVLEFF 416 (1106)
Q Consensus 410 ~~~~~~f 416 (1106)
+++...+
T Consensus 156 e~i~~rl 162 (219)
T 1s96_A 156 EVIAKRM 162 (219)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776544
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-14 Score=149.19 Aligned_cols=137 Identities=17% Similarity=0.142 Sum_probs=88.6
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
+++|++++|+||||||||||+++|+|. ++ .|.|.++|.++.... ..+.++|++|+.. +.+||.|++.+.+..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 678999999999999999999999998 44 799999997653221 1234677777543 467899998875432
Q ss_pred cCC-CcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc--cccccCccCCCCChhhhh
Q 001291 254 QGV-GTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA--DTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 254 ~~~-~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~--dt~vg~~~~rgLSGGqkq 330 (1106)
... +.. ...+. ++..+++.... +..+ ..+|+|++|
T Consensus 79 ~~~~~~~-----------~~~~~--------------------------~~~~~~l~~~~~~~~~~-----~~ls~~~~~ 116 (191)
T 1zp6_A 79 YAKEGYF-----------VILDG--------------------------VVRPDWLPAFTALARPL-----HYIVLRTTA 116 (191)
T ss_dssp HHHTSCE-----------EEECS--------------------------CCCTTTTHHHHTTCSCE-----EEEEEECCH
T ss_pred HhccCCe-----------EEEec--------------------------cCcHHHHHHHHhcCCCe-----EEEEecCCH
Confidence 100 000 00000 00001111111 1112 239999999
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 331 Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
|+.++|++..+|+++ +|+.....+.+.++.
T Consensus 117 ~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 117 AEAIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 999999999999877 587777666665543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-13 Score=154.99 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 333 sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.+ +++++|..+.+ +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 7666544433 222 3555 55566666655 889999998654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-13 Score=156.30 Aligned_cols=150 Identities=12% Similarity=0.067 Sum_probs=86.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCH
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 243 (1106)
.+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++..++.+||
T Consensus 23 ~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv 92 (418)
T 2qag_C 23 RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTI 92 (418)
T ss_dssp TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEE
T ss_pred CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceee
Confidence 356999999998 99999999999999999999765311 2222222111 1112468999998888888999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
.||+.|+...... . . .....+++ + ..
T Consensus 93 ~Dt~g~~~~~~~~-~---------------------~--------------~~~i~~~i-~-----------------~~ 118 (418)
T 2qag_C 93 VDTPGFGDAVDNS-N---------------------C--------------WQPVIDYI-D-----------------SK 118 (418)
T ss_dssp EECC-----------------------------------------------CHHHHHHH-H-----------------HH
T ss_pred eechhhhhhccch-h---------------------h--------------HHHHHHHH-H-----------------HH
Confidence 9998886432100 0 0 00011111 0 12
Q ss_pred CChhhhhHHHHHHHHhcCCc---cceeecCC-CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEec
Q 001291 324 VSGGQKKRVTTGEMMVGPAL---ALFMDEIS-TGLDSSTTFQIVNCFKQNIHINSGTAVISLLQ 383 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~---vllLDEpt-sgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q 383 (1106)
++.++++|++||++++.+|+ ++++|||| +|||+... .+ ++.+. .+.++|+++++
T Consensus 119 ~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~---lk~L~--~~v~iIlVinK 176 (418)
T 2qag_C 119 FEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EF---MKRLH--EKVNIIPLIAK 176 (418)
T ss_dssp HHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HH---HHHHT--TTSEEEEEEES
T ss_pred HHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HH---HHHHh--ccCcEEEEEEc
Confidence 66778889999999999999 99999999 69998773 33 33332 24555555544
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-13 Score=139.72 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=66.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++|+++++|++++|+||||||||||+++|+|.+ |. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999999 76 899999998764211111 2899997777 89999
Q ss_pred HHHHH
Q 001291 245 ETLAF 249 (1106)
Q Consensus 245 E~l~f 249 (1106)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-14 Score=151.61 Aligned_cols=169 Identities=10% Similarity=0.063 Sum_probs=107.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQGVG 257 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 257 (1106)
|++++|+||||||||||+++|++ +. +|.+.++|.++... ...++++|.+...+.+|+++++.+.++....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~---~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 71 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QL---DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLL- 71 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HS---SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---cc---CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHh-
Confidence 78999999999999999999997 33 78999998765332 2346777765444566888888775432100
Q ss_pred cchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccC---ccCCCC--ChhhhhHH
Q 001291 258 TRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGD---EMRRGV--SGGQKKRV 332 (1106)
Q Consensus 258 ~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~rgL--SGGqkqRv 332 (1106)
. +-....+...+. ...+.+ |+|+++++
T Consensus 72 ------------~------------------------------------~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 72 ------------A------------------------------------QNDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp ------------T------------------------------------TCEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred ------------c------------------------------------CCcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 0 000000000000 000124 88999998
Q ss_pred HHHH------HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecC-hhHHHhhcCeEEEecCCeEEE
Q 001291 333 TTGE------MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQP-APETYNLFDDIILLSDGQIVY 405 (1106)
Q Consensus 333 sia~------al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~-~~~~~~~~D~vilL~~G~iv~ 405 (1106)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+ .+++..+|. ..++.+++|+|+ ++|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~-~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DE-RYFYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CT-TSEEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-Cc-cEEEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8999999988884 899988877 777776532 23 344545666 778899999998 9999999
Q ss_pred EcCHHHH
Q 001291 406 QGPRELV 412 (1106)
Q Consensus 406 ~G~~~~~ 412 (1106)
+|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-13 Score=153.69 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=88.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
+|++++ +++|++++|+||||||||||+++|+|...+. ..|.|.+.+.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~-~~g~I~~~e~~~e-~~~~~~~~~v~Q~~------------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT-KSYHIITIEDPIE-YVFKHKKSIVNQRE------------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH-SCCEEEEEESSCC-SCCCCSSSEEEEEE------------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC-CCcEEEEecccHh-hhhccCceEEEeee------------
Confidence 566765 7899999999999999999999999964321 1577866665543 12233456666630
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
+++.. ..| +.+|+++|..+|++|++|||| |+++
T Consensus 191 ---------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~ 223 (372)
T 2ewv_A 191 ---------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLET 223 (372)
T ss_dssp ---------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ---------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHH
Confidence 11110 125 469999999999999999999 7766
Q ss_pred HHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 1031 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.. .+++. +..|.+|++|+|+.+ ..+.+||++
T Consensus 224 ~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~ 254 (372)
T 2ewv_A 224 VE---TALRA-AETGHLVFGTLHTNT--AIDTIHRIV 254 (372)
T ss_dssp HH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHHH
T ss_pred HH---HHHHH-HhcCCEEEEEECcch--HHHHHHHHH
Confidence 43 34443 356899999999965 445566653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-15 Score=173.14 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=96.2
Q ss_pred eeeceeEEEeC--ceEEEEEcCCCCCHHHHHHHHhCCCCCCCCce----eEEEECCccCCCCCccceEEEEcCCCCCCCC
Q 001291 167 ILKDVSGIVKP--GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVS----GRVTYNGHNMDEFVPERTAAYISQHDNHIGE 240 (1106)
Q Consensus 167 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~----G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1106)
+.+.|++.|++ |+.++|+||||||||||+++|+|.++|+ + |+|.++++.. ..+..+..
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~-------------~~~~~~~~ 220 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLG-------------GDEQAMQY 220 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSS-------------SCTTSSCT
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcC-------------CCcccCCh
Confidence 45689999999 9999999999999999999999999986 6 7766542100 00001111
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
... +++.+...- . .........++. ++.....++.+
T Consensus 221 ~~~-~~I~~~~q~-----~-----~~~~~t~~~nl~-----------------------------~~~~~~~~~~~---- 256 (365)
T 1lw7_A 221 SDY-PQMALGHQR-----Y-----IDYAVRHSHKIA-----------------------------FIDTDFITTQA---- 256 (365)
T ss_dssp TTH-HHHHHHHHH-----H-----HHHHHHHCSSEE-----------------------------EESSCHHHHHH----
T ss_pred hHH-HHHHHHHHH-----H-----HHHHHhccCCEE-----------------------------EEeCCchHHHH----
Confidence 122 334432110 0 000000000000 00000001111
Q ss_pred CCCCChhhhhHHHHHHHHh-cCCccceeec---CC------CCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 321 RRGVSGGQKKRVTTGEMMV-GPALALFMDE---IS------TGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~-~~p~vllLDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
..+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.|+ .+..+
T Consensus 257 -~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~-~~~~r 333 (365)
T 1lw7_A 257 -FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP-SYLDR 333 (365)
T ss_dssp -HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS-SHHHH
T ss_pred -HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC-CHHHH
Confidence 126677788888888775 5999999999 65 5899999999999998765543445444 4565 34555
Q ss_pred hcCeEEEe
Q 001291 391 LFDDIILL 398 (1106)
Q Consensus 391 ~~D~vilL 398 (1106)
++|.+.++
T Consensus 334 ~~~~i~~i 341 (365)
T 1lw7_A 334 YNQVKAVI 341 (365)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 56655444
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.8e-14 Score=150.25 Aligned_cols=154 Identities=14% Similarity=0.028 Sum_probs=92.0
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWL 956 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~ 956 (1106)
.+++|++++|+||||||||||+++|+|... .|.|.++|.+.... ...+.++|++|... +..++.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~~----~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLPG----VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCSS----SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhccC----CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 367999999999999999999999999732 57889988653221 11223566666433 346788887664322
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1036 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1036 (1106)
........ .++.+++..++..+... ..+ +..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~~-----~~~~~~~~~~l~~~~~~--~~~-~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYFV-----ILDGVVRPDWLPAFTAL--ARP-LHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCEE-----EECSCCCTTTTHHHHTT--CSC-EEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCeE-----EEeccCcHHHHHHHHhc--CCC-eEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 10000000 00000001111111100 001 1249999999999999999999876 68888888877
Q ss_pred HHHHHHhCCceEEEEec
Q 001291 1037 TVRNTVDTGRTVVCTIH 1053 (1106)
Q Consensus 1037 ~l~~~~~~g~tvi~~tH 1053 (1106)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665433334444443
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=126.60 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=67.4
Q ss_pred CCCChhhhhHHHHHHHHh----cCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 322 RGVSGGQKKRVTTGEMMV----GPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~----~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +++ +++++|+ ..+...+|+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEEE
Confidence 459999999999999996 56799999999999999999999999988642 344 4555555 457789999987
Q ss_pred ec--CCeE-EEEcCHHHHH
Q 001291 398 LS--DGQI-VYQGPRELVL 413 (1106)
Q Consensus 398 L~--~G~i-v~~G~~~~~~ 413 (1106)
+. +|.. +.....++..
T Consensus 139 v~~~~g~s~~~~~~~~~~~ 157 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAM 157 (173)
T ss_dssp EEEETTEEEEEECCHHHHH
T ss_pred EEecCCEEEEEEEEcHHHH
Confidence 63 6643 3344444443
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-13 Score=149.78 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=96.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh---CCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALA---GKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
++++++|+||||||||||+++|+ |...++ +|+|.++|.+... ...+.+.+++|+..+++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~---~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS---SGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE---HHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec---HHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 998876 8998887754321 1123455667777778888999999875431
Q ss_pred -cCCCcchh-hhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 254 -QGVGTRYE-MLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 254 -~~~~~~~~-~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
.+.+-..+ ........+..... ...+.-.+. ... .+.. +....+..++ .||| |
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~-~~~~~vi~L---~~~-------~~~~-----l~r~~~r~~~-----~lSg----r 156 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKI-CEVDLVISL---NIP-------FETL-----KDRLSRRWIH-----PPSG----R 156 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTT-CCCCEEEEE---ECC-------HHHH-----HHHHHTEEEE-----TTTT----E
T ss_pred cCCCeEEEECCCCCHHHHHHHHhh-cCCCEEEEE---ECC-------HHHH-----HHHHHcCCCc-----CCCC----C
Confidence 00000000 00000000000000 000000000 000 0000 1112233343 3898 6
Q ss_pred HHHHHHH-hcCCccceee----cCCCCCCHHHHHHHHHHHHHHHH
Q 001291 332 VTTGEMM-VGPALALFMD----EISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 332 vsia~al-~~~p~vllLD----EptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
+ +++ +.+|++++|| |||++||..+...+.+.++.+..
T Consensus 157 v---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 157 V---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp E---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred c---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 6 677 9999999999 99999999999999888887643
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.1e-15 Score=152.47 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=104.8
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPE 961 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~ 961 (1106)
|++++|+||||||||||+++|++.. .|.+.++|.+.... ...|+++|.....+..++++++.+.+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~-----~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL-----DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS-----SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc-----CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999732 36688887543211 124566665433333467777655432110000
Q ss_pred CChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC--CHHHHHHHHHHH------HHhcCCCeEEEeCCCCCCCHHHHHH
Q 001291 962 VNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL--STEQRKRLTIAV------ELVANPSIIFMDEPTSGLDARAAAI 1033 (1106)
Q Consensus 962 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L--S~Gqrqrl~iA~------aL~~~p~illLDEPTsgLD~~~~~~ 1033 (1106)
. ..+++.+........ ...+ |+|++|++.++. +++.+|+...+|+ +||+.....
T Consensus 74 ~---------~~ild~~~~~~~~~~------~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~ 135 (189)
T 2bdt_A 74 N---------DVVLDYIAFPDEAEA------LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL 135 (189)
T ss_dssp C---------EEEEESCCCHHHHHH------HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH
T ss_pred C---------cEEEeeccCHHHHHH------HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH
Confidence 0 000000000000000 0123 778888888888 8999999888884 899988888
Q ss_pred HHHHHHHHHhCCceEEEEecC-ccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1034 VMRTVRNTVDTGRTVVCTIHQ-PSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1034 i~~~l~~~~~~g~tvi~~tH~-~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
++.++.+.+.+.+||.++|+ ++ ++.+.||+|+ +.|+++..|++.
T Consensus 136 -~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~ 180 (189)
T 2bdt_A 136 -VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGD 180 (189)
T ss_dssp -HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC----
T ss_pred -HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCC
Confidence 88888876667899999998 77 5778899998 568899888765
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.6e-12 Score=132.33 Aligned_cols=77 Identities=10% Similarity=0.013 Sum_probs=56.7
Q ss_pred CChhh--hhHHHHHHHHhcC-CccceeecCCCCCCHHH--------HHHHHHHHHHHHHhcCCeEEEEEecChh------
Q 001291 324 VSGGQ--KKRVTTGEMMVGP-ALALFMDEISTGLDSST--------TFQIVNCFKQNIHINSGTAVISLLQPAP------ 386 (1106)
Q Consensus 324 LSGGq--kqRvsia~al~~~-p~vllLDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~ii~i~q~~~------ 386 (1106)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 45554 5678888899986 99999999999999743 245666688777655666554 555443
Q ss_pred -------HHHhhcCeEEEecCC
Q 001291 387 -------ETYNLFDDIILLSDG 401 (1106)
Q Consensus 387 -------~~~~~~D~vilL~~G 401 (1106)
.+...+|.|++|...
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-12 Score=149.56 Aligned_cols=137 Identities=17% Similarity=0.112 Sum_probs=97.3
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-hcccceEEEEc-cCCCCCCCCCHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-ETFARISGYCE-QNDIHSPFVTVYE 948 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~g~v~-q~~~~~~~~tv~e 948 (1106)
+++++|+.+++|++++|+||||||||||+++|+|...+ ..|.|.++|...-. ...++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~--~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF--DQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT--TSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC--CceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 45999999999999999999999999999999998764 37899999853211 12445678887 53321
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~ 1028 (1106)
+++++..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 012222356667777778899999999986
Q ss_pred HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1029 ~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
..+.+.|+.+.....|++.++|..+ ....+||+..|..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2455666666443457899999976 45678888877654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-12 Score=147.46 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=56.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-ccceEEEEc-CCCCC--CCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-PERTAAYIS-QHDNH--IGEMT 242 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 242 (1106)
+++++|+.+++|++++|+||||||||||+++|+|.++|+ +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 449999999999999999999999999999999999997 999999985311111 345788988 65432 23444
Q ss_pred HHHHHH
Q 001291 243 VRETLA 248 (1106)
Q Consensus 243 V~E~l~ 248 (1106)
++++|.
T Consensus 241 ~~~~i~ 246 (361)
T 2gza_A 241 AATLLR 246 (361)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.4e-14 Score=162.37 Aligned_cols=166 Identities=8% Similarity=0.009 Sum_probs=95.0
Q ss_pred eeeeeeeeeC--CeEEEEEcCCCCCHHHHHHhhhCCCCCceeE----EEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001291 872 LNGVSGAFRP--GVLTALMGVSGAGKTTLMDVLAGRKTGGYIT----GDIRISGYPKKQETFARISGYCEQNDIHSPFVT 945 (1106)
Q Consensus 872 L~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~t 945 (1106)
.+.|++.|.+ |++++|+||||||||||+++|+|...+ .. |.+.+++... ..+.......
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~--~~~~e~G~i~i~~~~~-------------~~~~~~~~~~ 222 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT--TSAWEYGREFVFEKLG-------------GDEQAMQYSD 222 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC--EEECCTTHHHHHHSSS-------------SCTTSSCTTT
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC--CcchhhHHHHHHhhcC-------------CCcccCChhH
Confidence 3578999999 999999999999999999999997653 34 5554421100 0000001111
Q ss_pred HHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEeC-
Q 001291 946 VYESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL--KPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-ANPSIIFMDE- 1021 (1106)
Q Consensus 946 v~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l--~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-~~p~illLDE- 1021 (1106)
. +++.+... ........+.+.+.+ .+..+... ..+|+|++|+..+++++. .+|+++||||
T Consensus 223 ~-~~I~~~~q----------~~~~~~~t~~~nl~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 223 Y-PQMALGHQ----------RYIDYAVRHSHKIAFIDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp H-HHHHHHHH----------HHHHHHHHHCSSEEEESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred H-HHHHHHHH----------HHHHHHHhccCCEEEEeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 1 22322110 000000000000000 00001100 125667778888888775 5999999999
Q ss_pred --CC------CCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1022 --PT------SGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1022 --PT------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
|+ .++|+..+..+.+.|+++.+ .|.+||+++|. + .....+|++.+++
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999985 3 3445666665554
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-11 Score=140.78 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=67.1
Q ss_pred CCCHHHHHHH------HHHHHHhcC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEE
Q 001291 995 GLSTEQRKRL------TIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 995 ~LS~Gqrqrl------~iA~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
.|||||+||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||+++ +...||+++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~~ 356 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVII 356 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEEE
Confidence 4999999988 567889999 99999999999999999999999999874 3579999999985 467899999
Q ss_pred EEecCC
Q 001291 1068 LMKRGG 1073 (1106)
Q Consensus 1068 ~l~~gG 1073 (1106)
+|++.|
T Consensus 357 ~l~k~~ 362 (371)
T 3auy_A 357 NVKKDG 362 (371)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 998544
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-11 Score=134.02 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=83.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC--CCCC---ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTG---GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~---~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+.+++|++++|+||||||||||++.|++ ...+ +...|.+++++.... ....-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 5689999999999999999999999998 2321 112456677664310 0000000
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCeEEEeCCCCCCCH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK-RLTIAVELV--ANPSIIFMDEPTSGLDA 1028 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq-rl~iA~aL~--~~p~illLDEPTsgLD~ 1028 (1106)
....+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|++|++||||+.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY-----A-------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE-----E-------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE-----E-------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000000 000 112221110 0 114554433 233333444 48999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHh-CCceEEEEecCccHHHH-------------------HhcCeEEEEecC
Q 001291 1029 R-------A-----AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIF-------------------EAFDELFLMKRG 1072 (1106)
Q Consensus 1029 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~-------------------~~~D~v~~l~~g 1072 (1106)
. + ...+++.|+++++ .|+|||+++|... +.. ..||.+++|+++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~-~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVA-QVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC--------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeee-cCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 2345555666554 4999999999654 221 168999999864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-15 Score=167.21 Aligned_cols=156 Identities=14% Similarity=0.096 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCCC------ceeEEEEEEcCccCChh------------------cccceEEEE---c
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKTG------GYITGDIRISGYPKKQE------------------TFARISGYC---E 935 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~g~v---~ 935 (1106)
++++|+|+||||||||++.|.|...+ .+..|.|.++|.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 68999999999999999999986421 12468888888765321 122335555 4
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCC--ChH-HHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001291 936 QNDIHSPFVTVYESLFYSAWLRLPPEV--NSE-TRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA 1012 (1106)
Q Consensus 936 q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~-~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~ 1012 (1106)
|+....+..++.|+..++......... ... .....++.+++.+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 554444455665554332100000000 000 00001112233344444444332 489999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+|+++ ||| ..+.+.|+++. .+.||++++|++.
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCC
Confidence 99987 998 67888888874 5899999999753
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-13 Score=140.06 Aligned_cols=112 Identities=19% Similarity=0.107 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------cc-ceEE----EEcCCCCCCCCCCHHHHH
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PE-RTAA----YISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 247 (1106)
++++|+|+||||||||+++|+|.+++.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999999875334799999998854332 12 2455 788865543 000
Q ss_pred HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChh
Q 001291 248 AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGG 327 (1106)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGG 327 (1106)
+ .. +. .+ ..+..++. .|+ ..||.+++ |||||
T Consensus 77 -------~--~~-----~~-----~a------------------------~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--SE-----EE-----GN------------------------DLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--CH-----HH-----HT------------------------CHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--Ch-----hh-----hh------------------------CHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 00 00 00 01223333 123 46899987 59999
Q ss_pred hhhHHHHHHHHhcCCccc
Q 001291 328 QKKRVTTGEMMVGPALAL 345 (1106)
Q Consensus 328 qkqRvsia~al~~~p~vl 345 (1106)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999874
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.9e-13 Score=143.02 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=52.9
Q ss_pred HHHHHcCCccc-ccccccCccCCCCChhhhhH-HHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001291 301 YYLKVLGLDIC-ADTMVGDEMRRGVSGGQKKR-VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 301 ~~l~~lgL~~~-~dt~vg~~~~rgLSGGqkqR-vsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
..++..+++.. ..+.+. .+|+||||| +..+++++.+|..+++|||||++|.....++++.|.+...
T Consensus 131 ~~~~~~~~~~~~v~nK~D-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 131 EWAVDSNIAVLVLLTKAD-----KLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHTTCCEEEEEECGG-----GSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHcCCCeEEEEeccc-----CCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 34556676642 234443 389999999 8999999999999999999999999999999999987653
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-12 Score=143.13 Aligned_cols=121 Identities=19% Similarity=0.152 Sum_probs=80.7
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC-CCCCceeEEEEC-CccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD-PSLKVSGRVTYN-GHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~~~~~~G~V~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |..... ...+.++|++|+..++++.||+|
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHHH
Confidence 4555553 4799999999999999999999999998 87 8999987 655421 22457999999988888889988
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
+ + +.+. ... +....+.++++.+|+....|....+ +|
T Consensus 281 ~---~--l~~l----------~~~------------------------e~~~~~~e~l~~~gl~~f~~~~~~~-----lS 316 (358)
T 2rcn_A 281 F---G--LWHL----------EPE------------------------QITQGFVEFHDYLGHCKYRDCKHDA-----DP 316 (358)
T ss_dssp C---C--CCCC----------CHH------------------------HHHHTSGGGGGGTTCSSSTTCCSSS-----CT
T ss_pred h---h--hcCC----------CHH------------------------HHHHHHHHHHHHcCCchhcCCCccc-----CC
Confidence 4 1 1110 000 0111234457778888777776654 99
Q ss_pred hhhhhHHHHHHHH
Q 001291 326 GGQKKRVTTGEMM 338 (1106)
Q Consensus 326 GGqkqRvsia~al 338 (1106)
||+||++||+++
T Consensus 317 -G~~~r~ala~gl 328 (358)
T 2rcn_A 317 -GCAIREAVENGA 328 (358)
T ss_dssp -TCHHHHHHHHTS
T ss_pred -HHHHHHHHHhcC
Confidence 999999999865
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-12 Score=148.97 Aligned_cols=161 Identities=17% Similarity=0.097 Sum_probs=98.9
Q ss_pred eeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 168 LKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 168 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
|+++|+.+++|++ ++|+||||||||||+++|+|..- .|..... .......+.++|++|++.+++.+||.|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~---~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATH---TQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCC---CCccceEeeEEEEeecCccccccchhh
Confidence 9999999999999 99999999999999999999841 2321110 001112357999999988888999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCc----cccccc----c
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLD----ICADTM----V 316 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~----~~~dt~----v 316 (1106)
|+.|+..... ..+... + ........+.+|... ++. ...|+. +
T Consensus 102 ~~~~g~~~~~---------~~~~~~----------i----------~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 102 TVGFGDQINK---------EDSYKP----------I----------VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp EECCCC-CCH---------HHHSHH----------H----------HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred hhhhhhcccc---------chhhhH----------H----------HHHHHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 9877532110 000000 0 000111233334433 443 122322 1
Q ss_pred c--CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 317 G--DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 317 g--~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
. .+...+|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++
T Consensus 153 ~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 153 YFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 1 01124577666 7899999999999999999999999888888888876
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.16 E-value=8.4e-14 Score=151.65 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhh---CCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh-
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWL- 956 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~- 956 (1106)
++++++|+||||||||||+++|+ |... +..|++.++|.+... .....+++++|+....+..++.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8754 346777766644211 1122344566777677777899988653210
Q ss_pred -----cCCCCCChHHHHHHHHHHHHH--cC------------CCcccccccCCCCCCCCCHHHHHHHHHHHHH-hcCCCe
Q 001291 957 -----RLPPEVNSETRKMFIEEVMEL--VE------------LKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL-VANPSI 1016 (1106)
Q Consensus 957 -----~~~~~~~~~~~~~~v~~~l~~--~~------------l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL-~~~p~i 1016 (1106)
... ...... ..++.+.+. ++ +..+.++. +..||| |+ +++ +.+|++
T Consensus 103 ~~~~~il~-g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~P~~ 167 (246)
T 2bbw_A 103 RGQHWLLD-GFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNPPHV 167 (246)
T ss_dssp TTSCEEEE-SCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSCCSS
T ss_pred CCCeEEEE-CCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCCCcc
Confidence 000 111111 112222211 12 11122222 235888 55 677 999999
Q ss_pred EEEe----CCCCCCCHHHHHHHHHHHHHHHhCC
Q 001291 1017 IFMD----EPTSGLDARAAAIVMRTVRNTVDTG 1045 (1106)
Q Consensus 1017 llLD----EPTsgLD~~~~~~i~~~l~~~~~~g 1045 (1106)
++|| |||++||..+...+.+.++++.+++
T Consensus 168 lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 168 HGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp TTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999 9999999999999999998886543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.15 E-value=5.2e-11 Score=140.42 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=68.4
Q ss_pred CCCHHHHHHHHHHHHHh----cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 995 GLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~----~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
.||||||||++||++|+ .+|+++||||||++||+.....+.+.|+++.+.|.++|+|||++ ...+.||+++.+.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 59999999999999999 58999999999999999999999999999865688999999996 4578899999987
Q ss_pred c
Q 001291 1071 R 1071 (1106)
Q Consensus 1071 ~ 1071 (1106)
.
T Consensus 411 ~ 411 (430)
T 1w1w_A 411 R 411 (430)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-12 Score=150.13 Aligned_cols=82 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC------C---ccceEEEEcCCCCCC
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF------V---PERTAAYISQHDNHI 238 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~------~---~~~~~~yv~Q~d~~~ 238 (1106)
-+++|+.+++|++++|+||||||||||++.|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 36899999999999999999999999999999999886 89999987765321 0 135689999998778
Q ss_pred CCCCHHHHHHHHHH
Q 001291 239 GEMTVRETLAFAAR 252 (1106)
Q Consensus 239 ~~lTV~E~l~f~~~ 252 (1106)
+.+||++++.++..
T Consensus 360 p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 SASVIFDAIQAAKA 373 (503)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 88999999998753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.12 E-value=1.1e-11 Score=140.78 Aligned_cols=121 Identities=17% Similarity=0.110 Sum_probs=82.4
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEc-CccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS-GYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
++|++. .+|++++|+||||||||||+++|+|.... +..|+|.++ |.+.. ....+.+++++|+..+++..+++|+
T Consensus 207 ~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~-- 281 (358)
T 2rcn_A 207 KPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF-- 281 (358)
T ss_dssp HHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC--
T ss_pred HHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh--
Confidence 344443 37999999999999999999999997641 247888876 65442 2345678999998877777788873
Q ss_pred HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001291 952 YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVEL 1010 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL 1010 (1106)
+. .....++....+.++++.+++.++.+... .+|| ||+||++||+++
T Consensus 282 -~l-----~~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 -GL-----WHLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp -CC-----CCCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred -hh-----cCCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 11 12334455566788899999988877664 3699 999999999875
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.2e-12 Score=141.13 Aligned_cols=134 Identities=16% Similarity=0.177 Sum_probs=84.1
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1106)
+++.+++|.||+|||||||.+.|++.+.+ .| . ..+.+.+|+|++.+++ .++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------C------CCceEEEeccccccCC-hHHHHHHhccccccc
Confidence 36789999999999999999999999865 22 0 1234566699987775 488999988631100
Q ss_pred CCcchhhhhHhhHHHHhcCCCCCC-ChHHHHHhhcchhhhHhHHHHHHHHHcCCc--c--cccccccCccCCCCChhhhh
Q 001291 256 VGTRYEMLTELSRREKAAGIKPDP-DIDVFMKAASTEGEEANVITDYYLKVLGLD--I--CADTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 256 ~~~~~~~~~~~~~~ek~~~~~p~~-d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~--~~dt~vg~~~~rgLSGGqkq 330 (1106)
.-.. .+ .|+. |. ......++.+.-. . .....+. .....+||||+|
T Consensus 92 l~~~-------------~g-~p~a~d~---------------~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~ 141 (290)
T 1odf_A 92 LLQG-------------RG-LPGTHDM---------------KLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGD 141 (290)
T ss_dssp GGSS-------------SC-STTSBCH---------------HHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCE
T ss_pred hhhh-------------cc-CcchhHH---------------HHHHHHHHHhhccCccccCcceeec-cCccccCCcccc
Confidence 0000 00 0111 11 1122334444322 0 0111121 223569999999
Q ss_pred HHHHH--HHHhcCCccceeecCCCCCCHHH
Q 001291 331 RVTTG--EMMVGPALALFMDEISTGLDSST 358 (1106)
Q Consensus 331 Rvsia--~al~~~p~vllLDEptsgLD~~~ 358 (1106)
|+.+| +++ +|+|+|+|||+++||+..
T Consensus 142 R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 142 RCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccccccceEc--CCCEEEEeCccccCCccc
Confidence 99987 555 999999999999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.2e-12 Score=144.97 Aligned_cols=131 Identities=17% Similarity=0.248 Sum_probs=92.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHH
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
+|++++ +++|++++|+|||||||||||++|+|.++|+ .+|+|.+.|.++. ...+..++||+|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 677776 7899999999999999999999999998763 1699987776553 22344567777741
Q ss_pred HHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCCh
Q 001291 247 LAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSG 326 (1106)
Q Consensus 247 l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSG 326 (1106)
+ |++ . ..+
T Consensus 191 ---------~--------------------------------------------------g~~----~-------~~~-- 198 (372)
T 2ewv_A 191 ---------V--------------------------------------------------GED----T-------KSF-- 198 (372)
T ss_dssp ---------B--------------------------------------------------TTT----B-------SCS--
T ss_pred ---------c--------------------------------------------------CCC----H-------HHH--
Confidence 0 000 0 014
Q ss_pred hhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEec
Q 001291 327 GQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLS 399 (1106)
Q Consensus 327 GqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 399 (1106)
+.+|+++|..+|+++++|||+ |..+.... ++. + ..+.+ +++++|. .++.+.+|+++.|.
T Consensus 199 ----~~~l~~~L~~~pd~illdE~~---d~e~~~~~---l~~-~-~~g~~-vi~t~H~-~~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 ----ADALRAALREDPDVIFVGEMR---DLETVETA---LRA-A-ETGHL-VFGTLHT-NTAIDTIHRIVDIF 257 (372)
T ss_dssp ----HHHHHHHTTSCCSEEEESCCC---SHHHHHHH---HHH-H-TTTCE-EEECCCC-CSHHHHHHHHHHTS
T ss_pred ----HHHHHHHhhhCcCEEEECCCC---CHHHHHHH---HHH-H-hcCCE-EEEEECc-chHHHHHHHHHHhc
Confidence 468999999999999999999 77664443 333 2 23444 5555665 44778888887764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-11 Score=131.66 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=27.2
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 56899999999999999999999999993
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-12 Score=148.02 Aligned_cols=152 Identities=13% Similarity=0.124 Sum_probs=99.1
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------c--ccceEEEEccCCCCCCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------T--FARISGYCEQNDIHSPF 943 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~--~~~~~g~v~q~~~~~~~ 943 (1106)
+++||++++|++++|+|+||||||||+++|+|.... ..|.|.++|.+.... . .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~--~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ--QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh--cCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 578999999999999999999999999999996432 257899987664321 1 24468999999877777
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-eEEEeC
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV-ANPS-IIFMDE 1021 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~-~~p~-illLDE 1021 (1106)
.|+++++.+..... .+. -+++..|..+... .|-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998763211 000 0111111111000 12223457888888764 4564 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-hCCceEEEEec
Q 001291 1022 PTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIH 1053 (1106)
Q Consensus 1022 PTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~tH 1053 (1106)
||+|.|... .++.+. .-|.|.|++||
T Consensus 421 attGq~al~------~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAVS------QAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHHH------HHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHHH------HHHHHHhhcCCCEEEEEc
Confidence 998876542 233333 24889999999
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-13 Score=154.96 Aligned_cols=164 Identities=15% Similarity=0.096 Sum_probs=94.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC--------CCCCCceeEEEECCccCCCCCc------------------cceEEEE
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL--------DPSLKVSGRVTYNGHNMDEFVP------------------ERTAAYI 231 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~--------~~~~~~~G~V~~~G~~~~~~~~------------------~~~~~yv 231 (1106)
=++++|+|+|||||||||+.|+|.. .++ .|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d---~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l 80 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE---FGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDL 80 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS---CCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec---CcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHH
Confidence 3689999999999999999999986 455 8999999987754311 1234555
Q ss_pred ---cCCCCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCC
Q 001291 232 ---SQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGL 308 (1106)
Q Consensus 232 ---~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1106)
+|+..+++..+|.||..++... ........... ......++.++..+++
T Consensus 81 ~~~~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~---------------------~~~~~~l~~~l~~vd~ 132 (318)
T 1nij_A 81 LDNLDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEV---------------------LCQRYLLDGVIALVDA 132 (318)
T ss_dssp HHHHHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHH---------------------HHHHEEEEEEEEEEET
T ss_pred HhHHhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCcc---------------------ccCeEEECCEEEEEEH
Confidence 4554445566666665443110 00000000000 0000000111222333
Q ss_pred cccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH
Q 001291 309 DICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1106)
Q Consensus 309 ~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1106)
.+..+... .+|+|||||+..+++++..|+++ ||| ..+.+.++++. . +.+|+.++|...++
T Consensus 133 ~~~~~~~~------~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 133 VHADEQMN------QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDIDL 192 (318)
T ss_dssp TTHHHHHH------HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCCG
T ss_pred HHHHHHHh------hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCCH
Confidence 33333322 38999999999889999999987 998 56777777652 3 34455556644344
Q ss_pred Hhhc
Q 001291 389 YNLF 392 (1106)
Q Consensus 389 ~~~~ 392 (1106)
..++
T Consensus 193 ~~l~ 196 (318)
T 1nij_A 193 GLLF 196 (318)
T ss_dssp GGGS
T ss_pred HHHh
Confidence 3344
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.1e-12 Score=148.70 Aligned_cols=158 Identities=14% Similarity=0.116 Sum_probs=90.7
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
-++|+++++.|+.++|+|+||||||||+++|+|... .+.+++... ....+|++.+++.. .+++.|..-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ftT--l~p~~G~V~~~~~~--~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFTT--LSPNLGVVEVSEEE--RFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTCS--SCCEEEEEECSSSC--EEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccce--ecceeeEEEecCcc--eEEEEeccc
Confidence 379999999999999999999999999999998642 234444321 22345666654310 011111110
Q ss_pred HhhhhcCCCCCChHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 952 YSAWLRLPPEVNSETRK--MFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 952 ~~~~~~~~~~~~~~~~~--~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+...............+ +.++.++..+++. +.. ..+||+|++|++.+|++|+.+|.||++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 00000000001111000 0011122222332 111 235999999999999999999999999 999997
Q ss_pred HHHHHHHHHHHHHhCCceEEEEec
Q 001291 1030 AAAIVMRTVRNTVDTGRTVVCTIH 1053 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~~~g~tvi~~tH 1053 (1106)
.+..+.++.+.+.+.|.+++.+|.
T Consensus 283 ~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHHHHHHHHHHHHTTTSCEEECCT
T ss_pred hHHHHHHHHHHHHhcCCeEEEEEC
Confidence 764333333334445777766553
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=9.3e-12 Score=140.56 Aligned_cols=73 Identities=16% Similarity=0.085 Sum_probs=62.1
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---------cceEEEEcCCCCCCCCCCHHHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---------ERTAAYISQHDNHIGEMTVRET 246 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~ 246 (1106)
++|++++|+||||||||||++.|+|.+.|. +|+|.++|.++..... +..+.|++|.....|.+||+|+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 689999999999999999999999999887 8999999988643221 1235699999888999999999
Q ss_pred HHHHH
Q 001291 247 LAFAA 251 (1106)
Q Consensus 247 l~f~~ 251 (1106)
+.++.
T Consensus 204 l~~~~ 208 (328)
T 3e70_C 204 IQHAK 208 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.3e-11 Score=118.44 Aligned_cols=44 Identities=9% Similarity=0.179 Sum_probs=36.9
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCce-EEEEecCc
Q 001291 1011 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT-VVCTIHQP 1055 (1106)
Q Consensus 1011 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~t-vi~~tH~~ 1055 (1106)
+.+|++|++|||++ +|...+..+.+++..+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6665588899999988877888 88899854
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-12 Score=127.02 Aligned_cols=78 Identities=21% Similarity=0.087 Sum_probs=63.6
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
..+++++||++++|++++|+||||||||||+++|+|.. + .+|.|.++|+++......+ .+++|+..++ .+|+.|
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~e 93 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADPE 93 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCTT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCCcHH
Confidence 45899999999999999999999999999999999976 3 4789999998764221111 2788987777 799999
Q ss_pred HHHH
Q 001291 949 SLFY 952 (1106)
Q Consensus 949 ~l~~ 952 (1106)
++.+
T Consensus 94 ~l~~ 97 (158)
T 1htw_A 94 ELEF 97 (158)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9854
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8.5e-13 Score=150.19 Aligned_cols=181 Identities=14% Similarity=0.074 Sum_probs=109.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCC-------CccceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEF-------VPERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 237 (1106)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.|+ +|+|.+.|.++... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999999887 89999999776432 124568999998877
Q ss_pred CCCC------------CHHHHHHHHHHhcC--------CCcchhhhhHhhHHHHhcCC---CCCC-ChHHHHHhhcchhh
Q 001291 238 IGEM------------TVRETLAFAARCQG--------VGTRYEMLTELSRREKAAGI---KPDP-DIDVFMKAASTEGE 293 (1106)
Q Consensus 238 ~~~l------------TV~E~l~f~~~~~~--------~~~~~~~~~~~~~~ek~~~~---~p~~-d~~~~~~~~~~~~~ 293 (1106)
++.. +++|.+.. ....+ +|-+.. +. ..+..++. .-++ ..+.. +
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~-~~~~~~~~iliDT~Gi~~~---~~-~v~~~~d~vl~v~d~~~~~~~--------~ 185 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLL-CEAAGFDVILVETVGVGQS---ET-AVADLTDFFLVLMLPGAGDEL--------Q 185 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHH-HHHTTCCEEEEEECSSSSC---HH-HHHTTSSEEEEEECSCC-------------
T ss_pred ccccCcccccccchHHHHHHHHHH-HhcCCCCEEEEECCCCCcc---hh-hHHhhCCEEEEEEcCCCcccH--------H
Confidence 6532 23333321 10000 110000 00 00001100 0000 00000 0
Q ss_pred hHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhc------CCccceeecCCCCCCHHHHHHHHHHHH
Q 001291 294 EANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCFK 367 (1106)
Q Consensus 294 ~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~------~p~vllLDEptsgLD~~~~~~i~~~l~ 367 (1106)
........+...+.+ +..|..- .+.+|+|++|++..+.+++. .|++++ +|++|......+++.|.
T Consensus 186 ~i~~~i~~~~~ivvl-NK~Dl~~----~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~ 256 (337)
T 2qm8_A 186 GIKKGIFELADMIAV-NKADDGD----GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIE 256 (337)
T ss_dssp -CCTTHHHHCSEEEE-ECCSTTC----CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHH
T ss_pred HHHHHHhccccEEEE-EchhccC----chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHH
Confidence 000001111222333 2233210 12379999999999998887 577776 99999999999999887
Q ss_pred HHH
Q 001291 368 QNI 370 (1106)
Q Consensus 368 ~~~ 370 (1106)
+..
T Consensus 257 ~~~ 259 (337)
T 2qm8_A 257 DHR 259 (337)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-10 Score=119.29 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=41.6
Q ss_pred hcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1011 VANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1011 ~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+.+|++|+||||++ ++|+..+..+.+++....++|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45999999999995 99999999999999988778999999999875
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=9e-12 Score=144.84 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=96.9
Q ss_pred eeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHH
Q 001291 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.+.. ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 478999999999999999999999999999999742 2333333322 224566665430 111111111
Q ss_pred HH---HHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 248 AF---AARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 248 ~f---~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
-+ +....+.+.. +.+ +...++.++..+++. +..+ ..+
T Consensus 214 Gli~~a~~~~~L~~~------------------------fl~--------~~era~~lL~vvDls---~~~~-----~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGLE------------------------FLR--------HIARTRVLLYVLDAA---DEPL-----KTL 253 (416)
T ss_dssp CCCCCGGGSCCSCHH------------------------HHH--------HHTSSSEEEEEEETT---SCHH-----HHH
T ss_pred ccccchhhhhhhhHH------------------------HHH--------HHHHHHhhhEEeCCc---cCCH-----HHH
Confidence 00 0000000000 000 000011122233332 2222 349
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
|+|++||+.+|++|...|.++++ +++|.... ..++.+++.....+.+++.+..+....+.++++.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 99999999999999999999999 99999876 5555555544434445555544444445444443
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.01 E-value=2.7e-13 Score=161.99 Aligned_cols=178 Identities=16% Similarity=0.142 Sum_probs=107.4
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.+++++++.+++|+.++|+||||||||||+++|+|..++ ..|.|.+.|.+.-.......+++..|........|..+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~--~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~ 325 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPP--DAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDL 325 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT--TCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC--CCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHH
Confidence 478999999999999999999999999999999997754 368889988652111112345555554332222455554
Q ss_pred HHHhhhhcCCC------CCChHHHHHH------------------HHHHHHHcCCCcc--cccccC-CC----CCCCCCH
Q 001291 950 LFYSAWLRLPP------EVNSETRKMF------------------IEEVMELVELKPL--RQSLVG-LP----GVNGLST 998 (1106)
Q Consensus 950 l~~~~~~~~~~------~~~~~~~~~~------------------v~~~l~~~~l~~~--~~~~~~-~~----g~~~LS~ 998 (1106)
+... +|+.+ +....+.... +.++++.+...+. ...... .. ....+|+
T Consensus 326 l~~~--LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 326 LRAA--LRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHTT--GGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHh--hccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4322 22211 1111111111 1223333322110 000000 00 0123799
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEE--EecCccHHHHHhcC
Q 001291 999 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC--TIHQPSIDIFEAFD 1064 (1106)
Q Consensus 999 Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~--~tH~~~~~~~~~~D 1064 (1106)
||+||+++|. + | |+|||+.+...+++.|.++...|+|+++ +||+++ ++...|+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 9999887752 1 7 9999999888888777777667899985 899987 4666665
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-11 Score=133.47 Aligned_cols=124 Identities=11% Similarity=0.088 Sum_probs=80.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc--c-ceEEEEcCCCCCC-----CCCCHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP--E-RTAAYISQHDNHI-----GEMTVR 244 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV~ 244 (1106)
.+|++++|+||||||||||+|+|+ ...|. +|+|.+ +|.+.+.... . +.++|++|++... +.+|+
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 358999999999999999999999 88887 999999 8987654321 1 2589999987543 68899
Q ss_pred HHH--HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc-cccccccCccC
Q 001291 245 ETL--AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CADTMVGDEMR 321 (1106)
Q Consensus 245 E~l--~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~~~ 321 (1106)
|++ .|+. .. .. .|+ ..+..+.. +....++.+++.+||+. ..+..+..
T Consensus 238 e~l~~~f~~-~~------~~---~c~---~~~~~~~~--------------e~~~~v~~~l~~~~L~~~~~~~~~~~--- 287 (302)
T 2yv5_A 238 REVRNYFRE-FL------RY---QCK---YPDCTHTN--------------EPGCAVKEAVKNGEISCERYKSYLKI--- 287 (302)
T ss_dssp GGGGGGCGG-GH------HH---HHH---STTCCSSS--------------CTTCHHHHHHHTTSSCHHHHHHHHHH---
T ss_pred HHHHHHHHH-HH------Hc---cCC---CCCCCCCC--------------CCCCHHHHHHHcCCCCHHHHHHHHHH---
Confidence 888 4431 00 00 000 00000000 11124677899999986 67776654
Q ss_pred CCCChhhhhHHHHHH
Q 001291 322 RGVSGGQKKRVTTGE 336 (1106)
Q Consensus 322 rgLSGGqkqRvsia~ 336 (1106)
|||.++|++.|||
T Consensus 288 --ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 288 --IKVYLEEIKELCR 300 (302)
T ss_dssp --TTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHhc
Confidence 9998889999886
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-12 Score=147.97 Aligned_cols=166 Identities=12% Similarity=0.113 Sum_probs=102.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cccceEEEEccCCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TFARISGYCEQNDIHSP 942 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~g~v~q~~~~~~ 942 (1106)
.+|+++++++++|++++|+|+||||||||+++|+|...+ ..|+|.+.|.+.... ..++.++|++|++..++
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~--~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA--AGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH--TTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh--CCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 489999999999999999999999999999999985432 247788887665321 13456789999877654
Q ss_pred CC------------CHHHHHHHh-h------------------hhcCCC-------CCC-hHHHHHHHHHHHHHcCCCcc
Q 001291 943 FV------------TVYESLFYS-A------------------WLRLPP-------EVN-SETRKMFIEEVMELVELKPL 983 (1106)
Q Consensus 943 ~~------------tv~e~l~~~-~------------------~~~~~~-------~~~-~~~~~~~v~~~l~~~~l~~~ 983 (1106)
.. ++.|.+... . .+.... +.. ....+.....+++...+--
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~~~~~ivv- 199 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIA- 199 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEE-
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHhccccEEE-
Confidence 21 123332100 0 000000 000 0000000001122221111
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 984 ~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
.++.. ......+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 200 lNK~D-l~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKAD-DGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCS-TTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchh-ccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 12111 00012479999999999999987 688877 999999999999999988653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.6e-12 Score=131.31 Aligned_cols=139 Identities=14% Similarity=0.214 Sum_probs=80.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCCC-ceeEEEEEEcCccCCh------hccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQ------ETFA-RISG----YCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----~v~q~~~~~~~~tv~e~l 950 (1106)
++++|+|+||||||||+++|+|...+ +...|.|+++|.++.. ..++ +.+| ++.|+..++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~--------- 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF--------- 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---------
Confidence 58999999999999999999996432 2347999999987321 2233 2455 777765433
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeE-------EEeCC
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMEL-VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSII-------FMDEP 1022 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~-~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~il-------lLDEP 1022 (1106)
++. ... +....++++++. +. . .|..++ .+||+|||||++||||++.+|++. .=|.|
T Consensus 74 -----i~~---~~~-~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 74 -----IRR---VSE-EEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp -----EEE---CCH-HHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred -----Eec---CCh-hhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 010 001 111134455554 43 2 233443 249999999999999999999762 23444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHhCCc
Q 001291 1023 TSG---LDARAAAIVMRTVRNTVDTGR 1046 (1106)
Q Consensus 1023 Tsg---LD~~~~~~i~~~l~~~~~~g~ 1046 (1106)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445666677766555553
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-11 Score=138.64 Aligned_cols=144 Identities=13% Similarity=0.067 Sum_probs=93.3
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-------cccc--eEEEEccCCCCCCCCCHHHH
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-------TFAR--ISGYCEQNDIHSPFVTVYES 949 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~--~~g~v~q~~~~~~~~tv~e~ 949 (1106)
.++|++++|+||||||||||++.|+|...+ ..|+|.+.|.+.... .+++ .+.+++|.....|..+++|+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHH
Confidence 368999999999999999999999996432 357889988775321 1122 35599999888888899999
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
+.++..... +. -+++..|+.+.. ..=.++.-.|++++..++.+++||.+|. .
T Consensus 204 l~~~~~~~~--d~----------vliDtaG~~~~~------------~~l~~eL~~i~ral~~de~llvLDa~t~-~--- 255 (328)
T 3e70_C 204 IQHAKARGI--DV----------VLIDTAGRSETN------------RNLMDEMKKIARVTKPNLVIFVGDALAG-N--- 255 (328)
T ss_dssp HHHHHHHTC--SE----------EEEEECCSCCTT------------TCHHHHHHHHHHHHCCSEEEEEEEGGGT-T---
T ss_pred HHHHHhccc--hh----------hHHhhccchhHH------------HHHHHHHHHHHHHhcCCCCEEEEecHHH-H---
Confidence 976532110 00 001111111111 1112334458999998888889995554 3
Q ss_pred HHHHHHHHHHHHH-hCCceEEEEecCc
Q 001291 1030 AAAIVMRTVRNTV-DTGRTVVCTIHQP 1055 (1106)
Q Consensus 1030 ~~~~i~~~l~~~~-~~g~tvi~~tH~~ 1055 (1106)
.+.+.++.+. ..+.|+|++||..
T Consensus 256 ---~~~~~~~~~~~~~~it~iilTKlD 279 (328)
T 3e70_C 256 ---AIVEQARQFNEAVKIDGIILTKLD 279 (328)
T ss_dssp ---HHHHHHHHHHHHSCCCEEEEECGG
T ss_pred ---HHHHHHHHHHHhcCCCEEEEeCcC
Confidence 3344455554 3489999999953
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=131.55 Aligned_cols=151 Identities=20% Similarity=0.233 Sum_probs=86.7
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhh--hCCCC---CceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVL--AGRKT---GGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLF 951 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l--~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~ 951 (1106)
+-|++|++++|+||||||||||++.| .+..+ ++.-.+.+++++..... . +.+.
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~---------------------~-~rl~ 230 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFR---------------------P-VRLV 230 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCC---------------------H-HHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccC---------------------H-HHHH
Confidence 57899999999999999999999954 45432 11123466776643210 0 0000
Q ss_pred -HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCeEEEeCCCCCCC
Q 001291 952 -YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLST-EQRKRLTIAVELV--ANPSIIFMDEPTSGLD 1027 (1106)
Q Consensus 952 -~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~-Gqrqrl~iA~aL~--~~p~illLDEPTsgLD 1027 (1106)
....+. ... +++++.+-+. . ..+. .+.+.+..+.+++ .+|++|++||||+.+|
T Consensus 231 ~~a~~~g----l~~-------~~vleni~~~---~---------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 231 SIAQRFG----LDP-------DDALNNVAYA---R---------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp HHHHHTT----CCH-------HHHHHTEEEE---E---------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred HHHHHcC----CCh-------HhHhhcEEEe---c---------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 000000 000 1122211110 0 1222 2344444444443 4699999999999999
Q ss_pred HHHH------------HHHHHHHHHHHhC-CceEEEEecCcc------------------HHHHHhcCeEEEEecC
Q 001291 1028 ARAA------------AIVMRTVRNTVDT-GRTVVCTIHQPS------------------IDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1028 ~~~~------------~~i~~~l~~~~~~-g~tvi~~tH~~~------------------~~~~~~~D~v~~l~~g 1072 (1106)
.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 6433 5677888888754 999999999821 1234568999999864
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.1e-12 Score=147.15 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=91.2
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-------cceEEEEc-----
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-------ERTAAYIS----- 232 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~----- 232 (1106)
..+|+++ + .++|++++|+|||||||||||++|+|.+++. +|+|.+.|.++..... .+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 4578888 4 3899999999999999999999999999887 8999999987642111 12344544
Q ss_pred ----CCCCC--CCC----CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH
Q 001291 233 ----QHDNH--IGE----MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302 (1106)
Q Consensus 233 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1106)
|++.. +++ .|+.+++.++..-..+ ...+ ...+ ....++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv------~~tl----------h~~~--------------~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLV------MSTL----------HTNT--------------AVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEE------EEEE----------CCSS--------------SHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCc------cccc----------chhh--------------HHHHHH-H
Confidence 87654 354 5888888775321100 0000 0000 001122 3
Q ss_pred HHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccce
Q 001291 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346 (1106)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vll 346 (1106)
|..+|++... ... .|||||+|| ||++++.+|++..
T Consensus 280 L~~lgl~~~~--~~~-----~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL--ISS-----SLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH--HHH-----HEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH--HHH-----HHHHHHHHH--hhhhhcCCCCccC
Confidence 5667887543 232 499999999 9999999999865
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=125.95 Aligned_cols=74 Identities=20% Similarity=0.324 Sum_probs=61.7
Q ss_pred CCCChhhhhHH------HHHHHHhcC-CccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 322 RGVSGGQKKRV------TTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 322 rgLSGGqkqRv------sia~al~~~-p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
..+|||||||+ ++|++++.+ |++|+|||||+|||+..+..+.+.|+++. .+++ |++++|.. ++..++|+
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~-vi~~th~~-~~~~~~d~ 354 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK--SIPQ-MIIITHHR-ELEDVADV 354 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC--SCSE-EEEEESCG-GGGGGCSE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc--cCCe-EEEEEChH-HHHhhCCE
Confidence 45999999988 567899999 99999999999999999999999998752 2345 44556664 47889999
Q ss_pred EEEec
Q 001291 395 IILLS 399 (1106)
Q Consensus 395 vilL~ 399 (1106)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99996
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-12 Score=154.79 Aligned_cols=85 Identities=21% Similarity=0.190 Sum_probs=65.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
..+++++++.+++|+.++|+|||||||||||++|+|.++|+ +|.|++.|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 35789999999999999999999999999999999999987 899999986522221234567777765433346777
Q ss_pred HHHHHHHH
Q 001291 245 ETLAFAAR 252 (1106)
Q Consensus 245 E~l~f~~~ 252 (1106)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 77765544
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=5.4e-11 Score=122.72 Aligned_cols=48 Identities=15% Similarity=0.116 Sum_probs=36.5
Q ss_pred hcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 339 VGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 339 ~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
+.+|++|+||||++ ++|+.....+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999888888876542 456777766655443
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.94 E-value=4.5e-11 Score=132.85 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=81.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh---h
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAW---L 956 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~---~ 956 (1106)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|.|++.+++ .+.++++.++.. +
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLT-HEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCC-HHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCC-hHHHHHHhccccccch
Confidence 46889999999999999999999985431 11 0 0234556699887765 478888877521 1
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCC--cccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCeEEEeCCCCCCCHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELK--PLRQSLVGLP-GVNGLSTEQRKRLTIA--VELVANPSIIFMDEPTSGLDAR 1029 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~--~~~~~~~~~~-g~~~LS~Gqrqrl~iA--~aL~~~p~illLDEPTsgLD~~ 1029 (1106)
....+.........+.+.++.+... ......+..| ....+||||+||+.+| +++ +|+|||+||||+++|+.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 0000111111123345556555332 0000000001 1246999999999997 555 89999999999999985
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=2.5e-12 Score=149.77 Aligned_cols=135 Identities=13% Similarity=0.016 Sum_probs=88.6
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-------hcccceEEEEc------
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-------ETFARISGYCE------ 935 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~g~v~------ 935 (1106)
..+|+++ + .++|++++|+||||||||||+++|+|...+ ..|.|.+.+.+... ....+.+|+.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~--~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNS--SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCC--TTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCC--CCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 4578888 5 389999999999999999999999996543 25788888766521 11223345544
Q ss_pred ---cCCCCC--CC----CCHHHHHHHhhhhcCC---CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001291 936 ---QNDIHS--PF----VTVYESLFYSAWLRLP---PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKR 1003 (1106)
Q Consensus 936 ---q~~~~~--~~----~tv~e~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqr 1003 (1106)
|++... .. .|+.+++.+....+.. ..... ....+ +.|..+++.+.. . ...|||||+||
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~--~~~~i-~rL~~lgl~~~~--~-----~~~LSgg~~QR 301 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNT--AVGAV-TRLRDMGIEPFL--I-----SSSLLGVLAQR 301 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSS--SHHHH-HHHHHHTCCHHH--H-----HHHEEEEEEEE
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhh--HHHHH-HHHHHcCCcHHH--H-----HHHHHHHHHHH
Confidence 776542 32 5888888765321100 00111 11222 346677887643 2 23599999999
Q ss_pred HHHHHHHhcCCCeEEE
Q 001291 1004 LTIAVELVANPSIIFM 1019 (1106)
Q Consensus 1004 l~iA~aL~~~p~illL 1019 (1106)
||++|+.+|++..-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.90 E-value=7e-11 Score=132.38 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=79.9
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChh--ccc-ceEEEEccCCCCC-----CCCCH
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQE--TFA-RISGYCEQNDIHS-----PFVTV 946 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~g~v~q~~~~~-----~~~tv 946 (1106)
.+.+|++++|+||||||||||+|+|+ ...+ .+|+|.+ +|.+.... ... +.+||++|.+... +.+|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~--~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEEL--RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCC--CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhC--cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 34579999999999999999999999 7653 4789998 88765432 111 2479999998654 57899
Q ss_pred HHHH--HHhhh----hcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001291 947 YESL--FYSAW----LRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNGLSTEQRKRLTIAVE 1009 (1106)
Q Consensus 947 ~e~l--~~~~~----~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~LS~Gqrqrl~iA~a 1009 (1106)
|++ .|... .+........+....+.++++.++|.+ ..+... ..||+.++|++.|||+
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 887 45410 111110111122345889999999986 555553 3599988999999873
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=4.2e-12 Score=146.17 Aligned_cols=169 Identities=15% Similarity=0.165 Sum_probs=114.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhC------------CCCCCCCceeEEEECCccCCC----CCccceE---EEEcCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAG------------KLDPSLKVSGRVTYNGHNMDE----FVPERTA---AYISQH 234 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G------------~~~~~~~~~G~V~~~G~~~~~----~~~~~~~---~yv~Q~ 234 (1106)
.+++|..++|+|+||||||||+++|+| ...|+ +|.|.++|..+.. +.+++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~---~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPE---EAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTT---EEEEEECCHHHHHHHHHHCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecce---eeeeeeCCcchhhhhhhcccccccCcceEEEec
Confidence 457899999999999999999999999 33455 8999999854311 1233333 467777
Q ss_pred CCCCCCCCHHHHH--HHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccc
Q 001291 235 DNHIGEMTVRETL--AFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICA 312 (1106)
Q Consensus 235 d~~~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1106)
+-+....+..|++ .|-..++... .++..+....
T Consensus 93 pGl~~~~s~~e~L~~~fl~~ir~~d-------------------------------------------~il~Vvd~~~-- 127 (392)
T 1ni3_A 93 AGLTKGASTGVGLGNAFLSHVRAVD-------------------------------------------AIYQVVRAFD-- 127 (392)
T ss_dssp GGGCCCCCSSSSSCHHHHHHHTTCS-------------------------------------------EEEEEEECCC--
T ss_pred cccccCCcHHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHhccc--
Confidence 7777777766655 4433322110 0000111110
Q ss_pred cccccCccCCCCChhhhhHHHHHHHHhcCC--ccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 313 DTMVGDEMRRGVSGGQKKRVTTGEMMVGPA--LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 313 dt~vg~~~~rgLSGGqkqRvsia~al~~~p--~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
|.. +..+||+. +| +++++|||+.++|.......++.++......+.+ ++ .|...++.+
T Consensus 128 d~~-----i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~t-i~--sh~~~~~~~ 187 (392)
T 1ni3_A 128 DAE-----IIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANT-LE--MKAKKEEQA 187 (392)
T ss_dssp TTC-----SSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCS-SS--HHHHHHHHH
T ss_pred cce-----eeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCc-cc--cccHHHHHH
Confidence 111 22256653 88 9999999999999999999888888761223334 32 788889999
Q ss_pred hcCeEE-EecCC-eEEEEcCHH
Q 001291 391 LFDDII-LLSDG-QIVYQGPRE 410 (1106)
Q Consensus 391 ~~D~vi-lL~~G-~iv~~G~~~ 410 (1106)
+||++. +|.+| ++++.|+.+
T Consensus 188 l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 188 IIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHhccCCceeecCCCC
Confidence 999999 99999 988877643
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=7.7e-10 Score=128.07 Aligned_cols=62 Identities=6% Similarity=-0.002 Sum_probs=42.6
Q ss_pred cCCccceeecCCCCCCHHHH------------HHHHHHHHHHHHhcCCeEEEEEecCh-------------------hHH
Q 001291 340 GPALALFMDEISTGLDSSTT------------FQIVNCFKQNIHINSGTAVISLLQPA-------------------PET 388 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~ii~i~q~~-------------------~~~ 388 (1106)
.+|+++++|||++.+|+... .++++.|+++++..+.++|++ +|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv-~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVT-NQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEE-EEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEE-EeecccCCccccccCCCccCCchhHH
Confidence 57999999999999997533 567788888887666565554 4541 224
Q ss_pred HhhcCeEEEecCCe
Q 001291 389 YNLFDDIILLSDGQ 402 (1106)
Q Consensus 389 ~~~~D~vilL~~G~ 402 (1106)
...+|.++.|..|+
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=124.50 Aligned_cols=135 Identities=15% Similarity=0.027 Sum_probs=71.2
Q ss_pred EEEEcCCCCCHHHHHHhhhC-CCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCC
Q 001291 885 TALMGVSGAGKTTLMDVLAG-RKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEV 962 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~ 962 (1106)
+.|.||||+|||||+++|++ ...+ ..|.+.++|.+.... .....+++++|.+.+..... + . ...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~--~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~--~~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGP--GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------M--GNN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCT--TCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCC--CCCeEEecceeecccccccceeeeecccceEEecHh--h--------c--CCc
Confidence 89999999999999999998 3332 357788887654321 11344677777543211000 0 0 000
Q ss_pred ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001291 963 NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042 (1106)
Q Consensus 963 ~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1042 (1106)
... .+.+.++.+......+... .||+ +..+|+++++|||++ ||..++..+.+++.+..
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred chH----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 111 1233333321111001110 2465 788999999999999 99999999999998864
Q ss_pred hCCceEEEEecCcc
Q 001291 1043 DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1043 ~~g~tvi~~tH~~~ 1056 (1106)
.+.++|+++|+++
T Consensus 163 -~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 163 -KNIRLIMVCDSMS 175 (354)
T ss_dssp -TTEEEEEEESCSC
T ss_pred -CCCEEEEEeCCHH
Confidence 4789999999976
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=5.8e-12 Score=139.24 Aligned_cols=142 Identities=15% Similarity=0.173 Sum_probs=92.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1106)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999977643211 23455666642 23444
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+++.|++.+....++ .. + .+ .+....+..+.
T Consensus 106 i~~~Deid~~~~~r~--------------~~--------~------------------~~------~~~~~~~~~l~--- 136 (274)
T 2x8a_A 106 VIFFDEVDALCPRRS--------------DR--------E------------------TG------ASVRVVNQLLT--- 136 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHHHHHHH---
T ss_pred eEeeehhhhhhcccC--------------CC--------c------------------ch------HHHHHHHHHHH---
Confidence 455455443211000 00 0 00 01111122222
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCC------------CCCHHHHHHHHHHH
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEIST------------GLDSSTTFQIVNCF 366 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEpts------------gLD~~~~~~i~~~l 366 (1106)
.|||||+||+.+++++..+|++| ||++. -.|...+.+|++.+
T Consensus 137 --~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 137 --EMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp --HHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred --hhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 39999999999999999999975 98864 23666777776543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-11 Score=126.70 Aligned_cols=30 Identities=40% Similarity=0.478 Sum_probs=28.1
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.++|++++|+||||||||||+++|+|.+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999999999875
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=3e-10 Score=127.22 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=50.3
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc---cceEEEEcCCCC------------
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP---ERTAAYISQHDN------------ 236 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~---~~~~~yv~Q~d~------------ 236 (1106)
+.+|++++|+|||||||||||++|+|...|+ +|+|.+ +|.+++.... .+.++||+|++.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~ 242 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPE 242 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHH
Confidence 4568999999999999999999999999998 999999 8887754321 135899999864
Q ss_pred ----CCCCCCHHHHHHHH
Q 001291 237 ----HIGEMTVRETLAFA 250 (1106)
Q Consensus 237 ----~~~~lTV~E~l~f~ 250 (1106)
++|++|+ ||+.|+
T Consensus 243 ~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 243 ELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHhccc-ccCcCC
Confidence 5788888 888775
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-11 Score=127.38 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=65.7
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCC-ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+...... .+++.......
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~--------------------~~~~~~~~~~~ 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRL--------------------LEPRGLLPRKG 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHH--------------------HGGGTCGGGTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHH--------------------HHHhcccccCC
Confidence 468999999999999999999999996431 223566666665432211 11110000000
Q ss_pred CCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH-HHHhcCCCeEEEeCCC
Q 001291 958 LPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA-VELVANPSIIFMDEPT 1023 (1106)
Q Consensus 958 ~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA-~aL~~~p~illLDEPT 1023 (1106)
.+...... .+.+.+..+...+..+......+ ..+|+||+|++++| ++++.++.++++|||.
T Consensus 79 ~~~~~~~~----~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 APETFDFE----GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp SGGGBCHH----HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred CCchhhHH----HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00000111 11222222211111111111112 24899999999998 8888888888889884
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-12 Score=138.18 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHH-HHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 334 ia~-al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 7889999999999999999999999988887654321 1122 1 1 67899988864
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-11 Score=138.49 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=101.7
Q ss_pred eeeeceeEEEeCc-------eEEEEEcCCCCCHHHHHHHHhCCCCCCC-CceeEEEECCccCCCC---CccceEEEEcCC
Q 001291 166 TILKDVSGIVKPG-------RLTLLLGPPSSGKTTLLLALAGKLDPSL-KVSGRVTYNGHNMDEF---VPERTAAYISQH 234 (1106)
Q Consensus 166 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~---~~~~~~~yv~Q~ 234 (1106)
.+++++++.+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4777788777776 8899999999999999999999873211 1266666655543211 113569999997
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc
Q 001291 235 DNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT 314 (1106)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1106)
+.+.+ ++.|++.......+. +.. +.. ......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~--~~~------------------------~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIM--IGK------------------------GPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----cee--ecc------------------------CcccccccccCCCeEEEE-ecC
Confidence 76554 788888544322110 000 000 000011223344455544 566
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.++. ||+|+|+|+.++ .+||+.+..++.+.|++.+...+ +.++...+..++++
T Consensus 159 ~~~~-----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~------~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 159 RSGL-----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD------VEIEDAAAEMIAKR 211 (334)
T ss_dssp CGGG-----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT------CCBCHHHHHHHHHT
T ss_pred Cccc-----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC------CCcCHHHHHHHHHh
Confidence 6654 999999998544 77888888899998888765433 23444444444443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.8e-09 Score=104.75 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=30.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
..+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3466666 8999999999999999999999998765
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-10 Score=131.65 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=60.6
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC--CCCCceeEEEE---CCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD--PSLKVSGRVTY---NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~V~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
++|++++|+||||||||||+++|+|.+. |+ +|+|.+ +|..... ...+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPN-QVLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCH-HHHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcH-HHHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 7899999999999999999999999987 76 899999 8876431 113457788 777778889999999987
Q ss_pred HHhc
Q 001291 251 ARCQ 254 (1106)
Q Consensus 251 ~~~~ 254 (1106)
..+.
T Consensus 153 ~~l~ 156 (308)
T 1sq5_A 153 SDLK 156 (308)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 6543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.7e-12 Score=144.01 Aligned_cols=170 Identities=9% Similarity=0.064 Sum_probs=109.2
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCC----------CCceeEEEEEEcCccCCh----hcccce---EEEEccCCCC
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRK----------TGGYITGDIRISGYPKKQ----ETFARI---SGYCEQNDIH 940 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~g~v~q~~~~ 940 (1106)
.+++|..++|+|+||||||||+++|+|.. +-.+..|.+.+.|..... ....+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 56789999999999999999999999932 112457999998743211 011122 2466666666
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--Ce
Q 001291 941 SPFVTVYESL--FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP--SI 1016 (1106)
Q Consensus 941 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p--~i 1016 (1106)
....+..|++ .|...++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 5555544433 222222210 00111111111 11 112245542 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HhCCceEEEEecCccHHHHHhcCeEE-EEecCC-EEEEEecCC
Q 001291 1017 IFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELF-LMKRGG-REVYVGPLG 1082 (1106)
Q Consensus 1017 llLDEPTsgLD~~~~~~i~~~l~~~-~~~g~tvi~~tH~~~~~~~~~~D~v~-~l~~gG-~~~~~G~~~ 1082 (1106)
+++|||+.++|+......++.++.. .+.|.||+ +|... ++.+.||++. +|.+ | ++++.|++.
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~ 209 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCC
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCC
Confidence 9999999999999999999999988 66677864 99886 5788899998 7765 5 666666554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.7e-12 Score=133.05 Aligned_cols=56 Identities=11% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHH-HHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 1006 IAV-ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1006 iA~-aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
+++ +++.+|++++|||+|+++|..+.+.|++.|.+..+. +.++|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678889999999999999999999999998876542 2345621 4689887775
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-09 Score=121.29 Aligned_cols=70 Identities=19% Similarity=0.305 Sum_probs=42.9
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE---CCccCCCCCc-cce-EEEEcCCCCCCC----CCCHHH
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY---NGHNMDEFVP-ERT-AAYISQHDNHIG----EMTVRE 245 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV~E 245 (1106)
+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|+.|.+.+.. .+|+ |
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 4579999999999999999999999999887 899998 8876654321 122 799999986654 6899 8
Q ss_pred HHH
Q 001291 246 TLA 248 (1106)
Q Consensus 246 ~l~ 248 (1106)
++.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-10 Score=130.88 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=71.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeee-------------------eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAF-------------------RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i-------------------~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+.++||++.|. +++++|++.+ .+|+++||+|+||||||||+++|+|
T Consensus 38 i~~~~v~~~y~---------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 38 LSLEEVAEIYL---------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCHHHHHHTHH---------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred cchHhHHHHHH---------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 66777775542 3678888887 8999999999999999999999999
Q ss_pred CCCCceeEEEEEE---cCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001291 905 RKTGGYITGDIRI---SGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLR 957 (1106)
Q Consensus 905 ~~~~~~~~G~i~i---~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~ 957 (1106)
.....+..|.|.+ +|+..... .++.+|++ |...+.+.+|+.+++.+...++
T Consensus 103 ~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 103 LLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 5330013688888 88775432 23446788 7666667789999987765443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.5e-08 Score=116.05 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred EEEEcCCCCCHHHHHHHHhC-CCCCCCCceeEEEECCccCCCCC-ccceEEEEcCCCCCCCCCCHHHHHHHHHHhcCCCc
Q 001291 181 TLLLGPPSSGKTTLLLALAG-KLDPSLKVSGRVTYNGHNMDEFV-PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGT 258 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G-~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 258 (1106)
++|.||||+|||||+++|+| .+.++ .|++.++|.+..... ....++|++|.+.+....+ + .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHh--h--------cCCcc
Confidence 89999999999999999999 56776 899999987654221 1356788888653211100 0 00000
Q ss_pred chhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHHHHH
Q 001291 259 RYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMM 338 (1106)
Q Consensus 259 ~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al 338 (1106)
. ..+...++.+......+..+ .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~~------~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQD------SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhccccccc------cccc-----------c
Confidence 0 00111111111100001111 2566 7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 339 VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
.++|+++++|||++ ||..+...+.+.+.+. ..++++|.++|...
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~---~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKY---SKNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHS---TTTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhh---cCCCEEEEEeCCHH
Confidence 88999999999999 9999999999988874 23455665666543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-09 Score=120.70 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=66.2
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChh-cccce-EEEEccCCCCCC----CCCHH
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQE-TFARI-SGYCEQNDIHSP----FVTVY 947 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~g~v~q~~~~~~----~~tv~ 947 (1106)
+.+.+|++++|+||||||||||+|+|+|... +..|+|.+ +|...... ...+. .||++|.+.+.+ .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~- 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE- 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-
Confidence 6677999999999999999999999999754 34788888 77654321 12222 699999987654 5789
Q ss_pred HHHH--Hhhh--h----cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 948 ESLF--YSAW--L----RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 948 e~l~--~~~~--~----~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
|++. |... + +........+....+.++++.++|.+.+.... ..|+.|++|
T Consensus 245 e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 245 EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 8883 3311 1 11110111122345789999999976433221 136677766
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.65 E-value=3e-08 Score=117.59 Aligned_cols=178 Identities=12% Similarity=0.127 Sum_probs=105.8
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEEEcCccCChhccc-ceEEEEccCCCCCCCCCHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIRISGYPKKQETFA-RISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~-~~~g~v~q~~~~~~~~tv~ 947 (1106)
..|+++++.+++|+++.|.|++|+|||||+..+++.... ..| .+.+-+......... |..+.... ...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-
Confidence 357888888999999999999999999999998873210 012 222222222111111 00000000 000
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCC
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSG 1025 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPTsg 1025 (1106)
+.+ +.. ... ......+.++++.++..++.-.. ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~l------~~g-~l~-~~~~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RTG-KLT-PEDWGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HTS-CCC-HHHHHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hcC-CCC-HHHHHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 111 111 122 22233455666666544433221 1258999886 5667776 67999999999987
Q ss_pred CCH--------HHHHHHHHHHHHHHhC-CceEEEEec---------C--ccH-------HHHHhcCeEEEEecC
Q 001291 1026 LDA--------RAAAIVMRTVRNTVDT-GRTVVCTIH---------Q--PSI-------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1026 LD~--------~~~~~i~~~l~~~~~~-g~tvi~~tH---------~--~~~-------~~~~~~D~v~~l~~g 1072 (1106)
.+. .....+.+.|+.++++ |++||+++| + |.. .+...+|.+++|.++
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~ 399 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRD 399 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecc
Confidence 742 3346777788887744 899999999 2 431 245679999999865
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=3.8e-09 Score=114.15 Aligned_cols=68 Identities=12% Similarity=0.176 Sum_probs=46.0
Q ss_pred HHHHHHHh--cCCCeEEEeCCCCCC--CHHHHHHHHHHHHHH-HhCCceEEEEecCccHH-------HHHhcCeEEEEec
Q 001291 1004 LTIAVELV--ANPSIIFMDEPTSGL--DARAAAIVMRTVRNT-VDTGRTVVCTIHQPSID-------IFEAFDELFLMKR 1071 (1106)
Q Consensus 1004 l~iA~aL~--~~p~illLDEPTsgL--D~~~~~~i~~~l~~~-~~~g~tvi~~tH~~~~~-------~~~~~D~v~~l~~ 1071 (1106)
+..++.++ .+|+++++|+|++.+ |+.....++..+.++ .+.|+|||+++|..... +...+|.++.|++
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 579999999999988 554344444444444 46699999999976521 3467899999975
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.9e-11 Score=133.68 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=92.3
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCC-CCCCCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQND-IHSPFV 944 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~-~~~~~~ 944 (1106)
..+++++++.+++| ++|+||||||||||+++|+|.... +.+.++|.+.... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 35789999999999 999999999999999999996542 5788998765321 1223456666653 334445
Q ss_pred CHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 945 TVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 945 tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
++.|++.+....+. .. ... .+....+... ..|||||+||+.|++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccC-----CC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 55555533211110 00 000 0112222222 249999999999999999999985 99964
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001291 1025 ------------GLDARAAAIVMRTV 1038 (1106)
Q Consensus 1025 ------------gLD~~~~~~i~~~l 1038 (1106)
--|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23677777776654
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=7.5e-09 Score=121.82 Aligned_cols=53 Identities=15% Similarity=0.102 Sum_probs=49.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
..+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999998 9999999988754
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-08 Score=112.11 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=73.0
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSA 954 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~ 954 (1106)
+++..++|++++|+|+|||||||++..|++.... ..|.+.+.+.+.... ...|
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~D~~r~-------------------~a~e------ 149 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAADTFRA-------------------AAIE------ 149 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEECTTCH-------------------HHHH------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEccccccH-------------------HHHH------
Confidence 4556778999999999999999999999985421 124555544332100 0011
Q ss_pred hhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCeEEEeCCCCCCCHHHH
Q 001291 955 WLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL---TIAVELVANPSIIFMDEPTSGLDARAA 1031 (1106)
Q Consensus 955 ~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl---~iA~aL~~~p~illLDEPTsgLD~~~~ 1031 (1106)
.+..+.+.+++..+ ..+|+|+.+++ +|++++..+|+++|+|||.. ....
T Consensus 150 ---------------qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 150 ---------------QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ---------------HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ---------------HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 12233445555321 13689999999 99999999999999999974 2334
Q ss_pred HHHHHHHHHH
Q 001291 1032 AIVMRTVRNT 1041 (1106)
Q Consensus 1032 ~~i~~~l~~~ 1041 (1106)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455444443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=105.39 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=84.7
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
++++++ +|++++++|+||+||||++..|++.... ..|.+.+.+.+..... +. +.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~--~~~~v~l~~~d~~~~~------------------~~-~q--- 144 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADTQRPA------------------AR-EQ--- 144 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH--TTCCEEEEECCSSCHH------------------HH-HH---
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEecCCcccHh------------------HH-HH---
Confidence 678888 8999999999999999999999985431 1356666554432110 00 00
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-CCCCCHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAA 1031 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-TsgLD~~~~ 1031 (1106)
...+.+..++.-+... ......+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 145 ------------------l~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 145 ------------------LRLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp ------------------HHHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred ------------------HHHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 0112233444322110 11345566788999998899999999999 999999888
Q ss_pred HHHHHHHHHHHhCCceEEEEe
Q 001291 1032 AIVMRTVRNTVDTGRTVVCTI 1052 (1106)
Q Consensus 1032 ~~i~~~l~~~~~~g~tvi~~t 1052 (1106)
..+.+..+.+. ...+++++.
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~ 219 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEE
T ss_pred HHHHHHhhhcC-CCEEEEEEe
Confidence 88888777653 345555543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-09 Score=116.74 Aligned_cols=102 Identities=15% Similarity=0.215 Sum_probs=63.3
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE---cCccCChhc--c-cceEEEEccCCC-----------
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI---SGYPKKQET--F-ARISGYCEQNDI----------- 939 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~--~-~~~~g~v~q~~~----------- 939 (1106)
|.+.+|++++|+||||||||||+++|+|...+ ..|+|.+ +|.+..... + .+.+||++|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~--~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~ 241 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKL--RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEP 241 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCC--C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccc--cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCH
Confidence 34457999999999999999999999997663 4799998 787653211 1 134799999875
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCC-cccccc
Q 001291 940 -----HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK-PLRQSL 987 (1106)
Q Consensus 940 -----~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~ 987 (1106)
++|.+|+ ||+.|..... ..+....+.++++.++|. +..+..
T Consensus 242 ~~~~~l~~~~~~-~n~~~~~~~~------~~e~~~~v~~~l~~~~L~~~~~~~~ 288 (301)
T 1u0l_A 242 EELKHYFKEFGD-KQCFFSDCNH------VDEPECGVKEAVENGEIAESRYENY 288 (301)
T ss_dssp HHHGGGSTTSSS-CCCSSTTCCS------SSCSSCHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHhccc-ccCcCCCCcC------CCCCCcHHHHHHHcCCCCHHHHHHH
Confidence 3667788 8887652111 112234578999999995 444444
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.54 E-value=3.5e-08 Score=110.18 Aligned_cols=112 Identities=15% Similarity=0.186 Sum_probs=77.2
Q ss_pred eeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 171 VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 171 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eqL--- 151 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQL--- 151 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHHH---
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHHH---
Confidence 34556789999999999999999999999998775 677777654321 00 001111
Q ss_pred HHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhh
Q 001291 251 ARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKK 330 (1106)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkq 330 (1106)
....+.+|++. + ...|||+.+
T Consensus 152 -------------------------------------------------~~~~~~~gl~~-----~-----~~~s~~~~~ 172 (306)
T 1vma_A 152 -------------------------------------------------KIWGERVGATV-----I-----SHSEGADPA 172 (306)
T ss_dssp -------------------------------------------------HHHHHHHTCEE-----E-----CCSTTCCHH
T ss_pred -------------------------------------------------HHHHHHcCCcE-----E-----ecCCccCHH
Confidence 11233445543 1 136899999
Q ss_pred HH---HHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHH
Q 001291 331 RV---TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQN 369 (1106)
Q Consensus 331 Rv---sia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~ 369 (1106)
++ ++++++..+|+++++|+|.. ......+++.|+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l 211 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHH
Confidence 99 89999999999999999974 34445555555554
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-07 Score=105.69 Aligned_cols=142 Identities=17% Similarity=0.168 Sum_probs=87.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHhcC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARCQG 255 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 255 (1106)
++|++++|+|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~~-- 159 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAEL-- 159 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHHh--
Confidence 479999999999999999999999998754 45 24566666541 34566665542211
Q ss_pred CCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHHHH
Q 001291 256 VGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335 (1106)
Q Consensus 256 ~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia 335 (1106)
+|++.. + ..+ ++.-+.+++
T Consensus 160 --------------------------------------------------~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 160 --------------------------------------------------LQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp --------------------------------------------------TTCCCC----B------CSS-HHHHHHHHH
T ss_pred --------------------------------------------------cCCCeE----e------cCC-HHHHHHHHH
Confidence 122110 0 012 223355555
Q ss_pred HHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEEE--ecChhHHHhhcCeEEEecCCeEEEE
Q 001291 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHI-NSGTAVISL--LQPAPETYNLFDDIILLSDGQIVYQ 406 (1106)
Q Consensus 336 ~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~-~~~t~ii~i--~q~~~~~~~~~D~vilL~~G~iv~~ 406 (1106)
+ +.+++++|+| |+|+|+.....+.+..+ .... ....+++++ +|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876654444333 2211 111223333 6666778888887766777777753
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.50 E-value=2.1e-07 Score=106.04 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HhCCceEEEEecCccH-----
Q 001291 1002 KRLTIAVELVAN--PSIIFMDEPTSGL----------DA---RAAAIVMRTVRNT----VDTGRTVVCTIHQPSI----- 1057 (1106)
Q Consensus 1002 qrl~iA~aL~~~--p~illLDEPTsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~tH~~~~----- 1057 (1106)
+-+.++++++.+ |+++++||+++.+ |+ ..++.+.+.++++ .+.|+|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 356678888765 9999999999998 32 1223444555554 3559999999996431
Q ss_pred ----------HHHHhcCeEEEEecC
Q 001291 1058 ----------DIFEAFDELFLMKRG 1072 (1106)
Q Consensus 1058 ----------~~~~~~D~v~~l~~g 1072 (1106)
.+...||.++.+.++
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~ 230 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI 230 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEe
Confidence 134578988888763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=6.1e-10 Score=126.74 Aligned_cols=150 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred eEEeeeeeeeeeCC-------eEEEEEcCCCCCHHHHHHhhhCCCCC--ceeEEEEEEcCccCCh--hc-ccceEEEEcc
Q 001291 869 LVLLNGVSGAFRPG-------VLTALMGVSGAGKTTLMDVLAGRKTG--GYITGDIRISGYPKKQ--ET-FARISGYCEQ 936 (1106)
Q Consensus 869 ~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~--~~-~~~~~g~v~q 936 (1106)
..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... .. ..+.++++.|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 34778888888876 88999999999999999999985311 1234444443332211 01 1346889998
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCC--ChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001291 937 NDIHSPFVTVYESLFYSAWLRLPPEV--NSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANP 1014 (1106)
Q Consensus 937 ~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p 1014 (1106)
.+.+.+ ++.|++....... ..+. ........+.+.++.+++.. .... +..||+|+|||+.++
T Consensus 111 ~~~l~~--~~~e~L~~~~~~~-~~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK--AVEELLYSAIEDF-QIDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH--HHHHHHHHHHHTS-CCCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-------
T ss_pred hhhcCH--HHHHHHHHHHHhc-ccceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-------
Confidence 776654 6778774322111 1110 01111222334444444433 2222 235999999998654
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 1015 SIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 1015 ~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
.+||+.+...+.+.|++.++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHHH
Confidence 67888888888888887754
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.4e-07 Score=111.80 Aligned_cols=184 Identities=14% Similarity=0.100 Sum_probs=108.3
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
.....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++
T Consensus 188 tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s 243 (454)
T 2r6a_A 188 TGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MS 243 (454)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SC
T ss_pred CCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CC
Confidence 3456799999889999999999999999999999999875432 22 134555432 34
Q ss_pred HHHHHHHH-HHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 243 VRETLAFA-ARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 243 V~E~l~f~-~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
..+...-. +...++.. .+. ..+... ..+. ..+...++.++..+.. +-+ .
T Consensus 244 ~~~l~~r~~~~~~~~~~--------~~l--~~g~l~--------------~~~~-~~~~~a~~~l~~~~l~---i~d--~ 293 (454)
T 2r6a_A 244 AQQLVMRMLCAEGNINA--------QNL--RTGKLT--------------PEDW-GKLTMAMGSLSNAGIY---IDD--T 293 (454)
T ss_dssp HHHHHHHHHHHHHTCCH--------HHH--HTSCCC--------------HHHH-HHHHHHHHHHHSSCEE---EEC--C
T ss_pred HHHHHHHHHHHHcCCCH--------HHH--hcCCCC--------------HHHH-HHHHHHHHHHhcCCEE---EEC--C
Confidence 43322211 00111100 000 000000 0111 1223334444332221 111 1
Q ss_pred CCCChhhhhHHHHHHHHh--cCCccceeecCCCCCCH--------HHHHHHHHHHHHHHHhcCCeEEEEEec--------
Q 001291 322 RGVSGGQKKRVTTGEMMV--GPALALFMDEISTGLDS--------STTFQIVNCFKQNIHINSGTAVISLLQ-------- 383 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~--~~p~vllLDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~ii~i~q-------- 383 (1106)
.++|.+|.+ +.++.++ .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 294 ~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~ 370 (454)
T 2r6a_A 294 PSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQR 370 (454)
T ss_dssp TTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC
T ss_pred CCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccC
Confidence 348999987 5566665 68999999999998743 23366778888888766555555 555
Q ss_pred ----Ch-------hHHHhhcCeEEEecCCeE
Q 001291 384 ----PA-------PETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 384 ----~~-------~~~~~~~D~vilL~~G~i 403 (1106)
|. ..+...+|.|++|..++.
T Consensus 371 ~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 371 QDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp ---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.48 E-value=3e-07 Score=99.07 Aligned_cols=60 Identities=18% Similarity=0.108 Sum_probs=42.1
Q ss_pred cCCccceeecCCCCC--CHHHHHHHHHHHHHHHHhcCCeEEEEEecChhH--------HHhhcCeEEEecC
Q 001291 340 GPALALFMDEISTGL--DSSTTFQIVNCFKQNIHINSGTAVISLLQPAPE--------TYNLFDDIILLSD 400 (1106)
Q Consensus 340 ~~p~vllLDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~--------~~~~~D~vilL~~ 400 (1106)
.+|+++++|+|++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|..
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 579999999999988 6555566666677666655555555 5555444 4678899999963
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.3e-09 Score=127.82 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=99.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCC---------
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHD--------- 235 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--------- 235 (1106)
..++++++..+++|+.++|+||||+|||||+++|++.+.+. .-|.+.+++.+.+... ..++|++|..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~~--p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDENM--PRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTTS--CEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCcccccC--CcEEEEecchHHHHHHHHH
Confidence 45789999999999999999999999999999999999875 2388999887766543 4688988742
Q ss_pred -------------CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHH
Q 001291 236 -------------NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYY 302 (1106)
Q Consensus 236 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~ 302 (1106)
..+..+++.+|+.... +. ..+.+-+ ... . ...
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~~-~~--------------------~~~~~~v---------~~~--~---~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVDN-CG--------------------RTKAPFI---------DAT--G---AHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEECC-TT--------------------CSSCCEE---------ECT--T---CCH
T ss_pred Hhhccchhhhhhcccccccccccceeecc-cc--------------------CCCCCEE---------EcC--C---CCH
Confidence 0111111111111000 00 0000000 000 0 001
Q ss_pred HHHcCCcccccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 303 LKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 303 l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
-+.+|.-..... ...++|+|++|++..+.....++.+|||||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~~-----~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDPF-----QSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCCC---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEechh-----hcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 122232111111 124599999999999999999999999999998 898888777777754
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-07 Score=104.15 Aligned_cols=161 Identities=14% Similarity=0.107 Sum_probs=89.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLP 959 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~ 959 (1106)
.+|++++|+|+||+||||++..|++.... ..| +.+.++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~--~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISML--EKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHH--TTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH--hcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 47899999999999999999999985321 012 12455555442 234445443211
Q ss_pred CCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 001291 960 PEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039 (1106)
Q Consensus 960 ~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1039 (1106)
+..++.... ..+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 112221100 1222 23344555 45999999999 99999876665555443
Q ss_pred HHH---hCCceEEE-EecCccHHHHHhcCeEEEEecCCEEEEEecCCC-chhHHHHHHHhCCCCc
Q 001291 1040 NTV---DTGRTVVC-TIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH-HSCHLISYFEVCPDAH 1099 (1106)
Q Consensus 1040 ~~~---~~g~tvi~-~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~-~~~~~~~yf~~~~g~~ 1099 (1106)
-+. ..+.++|+ .+|..+ ++.+.++++..+..+ .++...--+. ....+++.... -|+|
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~-giVltk~D~~~~~g~~~~~~~~-~~~p 268 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVN-QYIFTKIDETTSLGSVFNILAE-SKIG 268 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCC-EEEEECTTTCSCCHHHHHHHHT-CSCC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCC-EEEEeCCCcccchhHHHHHHHH-HCcC
Confidence 332 11233444 388865 566777776656554 4565432111 22345554442 2444
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-09 Score=107.94 Aligned_cols=69 Identities=17% Similarity=0.261 Sum_probs=46.4
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC---ccceEEEEcCCCCCCCCCCHHHHH
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV---PERTAAYISQHDNHIGEMTVRETL 247 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1106)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999863 2455554433221 134578999976555555554443
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-09 Score=109.29 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=44.0
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHH
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ....+.++|++|++..++.+++.+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 56778999999999999999999999999643 23444432211 11234578899876655545554443
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=2.1e-07 Score=96.57 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~ 1041 (1106)
+...+|++++.+|+++++| ||++|..+...+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4577899999999999999 9999999999999888653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.1e-08 Score=114.87 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=92.3
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC--CCCCceeEEEEEEcCccCChhcccceEEEEccCCCCC-CC-CCHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHS-PF-VTVYES 949 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~-~~-~tv~e~ 949 (1106)
.+++++.++..+.|.|++||||||++++|.. ..... .+++.+.+.+.+...+... ..-+.+. +- ..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~--p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ--PEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC--TTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC--CceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 3667788899999999999999999999865 11111 1334444433322111100 0011110 11 122222
Q ss_pred HHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-eEE
Q 001291 950 LFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL----------TIAVELVANPS-IIF 1018 (1106)
Q Consensus 950 l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 1018 (1106)
...-.++ .++.+++ .+.++..++.++.+..... ...+|+||+|+. .+|+++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1223333 3678888887654421000 013677877652 35666777888 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh----CCceEEEEecCcc
Q 001291 1019 MDEPTSGLDARAAAIVMRTVRNTVD----TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1019 LDEPTsgLD~~~~~~i~~~l~~~~~----~g~tvi~~tH~~~ 1056 (1106)
+||+++-+|.. ...+.+.|.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999988843 3445566665543 3679999999997
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-09 Score=118.75 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=53.5
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||+|||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 111 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 111 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeE
Confidence 5789999999999 99999999999999999999874 6889998866432111 12344555542 234445
Q ss_pred CHHHHH
Q 001291 242 TVRETL 247 (1106)
Q Consensus 242 TV~E~l 247 (1106)
++.|++
T Consensus 112 ~~~Dei 117 (254)
T 1ixz_A 112 VFIDEI 117 (254)
T ss_dssp EEEETH
T ss_pred EEehhh
Confidence 555555
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.1e-09 Score=121.36 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=54.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCC-CCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHD-NHIGEM 241 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~l 241 (1106)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|.. ...+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5789999999999 89999999999999999999874 6889998876432111 12345555542 234455
Q ss_pred CHHHHHH
Q 001291 242 TVRETLA 248 (1106)
Q Consensus 242 TV~E~l~ 248 (1106)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 6666654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.7e-07 Score=99.08 Aligned_cols=117 Identities=16% Similarity=0.072 Sum_probs=79.8
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHH
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+.... .++ +.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~~------------------~~~-~ql~ 146 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQRP------------------AAR-EQLR 146 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSCH------------------HHH-HHHH
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCcccH------------------hHH-HHHH
Confidence 678887 99999999999999999999999998765 68888876543210 000 0000
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
.+.+..|++.... + .+-...+
T Consensus 147 ----------------------------------------------------~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 147 ----------------------------------------------------LLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ----------------------------------------------------HHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ----------------------------------------------------HhcccCCeEEEEc---C----CCCCHHH
Confidence 0112234432210 0 0123345
Q ss_pred hhHHHHHHHHhcCCccceeecC-CCCCCHHHHHHHHHHHHH
Q 001291 329 KKRVTTGEMMVGPALALFMDEI-STGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEp-tsgLD~~~~~~i~~~l~~ 368 (1106)
-+|.+++++...+++++++||| +.++|......+.+..+.
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~ 208 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEV 208 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhh
Confidence 5688999988899999999999 999998887777766554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.33 E-value=6.2e-10 Score=123.27 Aligned_cols=127 Identities=16% Similarity=0.186 Sum_probs=79.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..+.++
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 4789999999999 89999999999999999998653 4667787754321 111223455666542 345566
Q ss_pred HHHHHH-HhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC
Q 001291 946 VYESLF-YSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1022 (1106)
Q Consensus 946 v~e~l~-~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP 1022 (1106)
+.|++. ++...........+.....+.+++. .|||||+||+.|++|+..+|++ ||++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHHH------------------HHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 667763 3211110000011122222223221 3899999999999999999986 5655
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.5e-08 Score=99.61 Aligned_cols=43 Identities=9% Similarity=0.077 Sum_probs=35.8
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHH
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQ 368 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~ 368 (1106)
|..-..+.+.+|++++.+|+++++| ||+||.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4333345678999999999999999 999999999999988765
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4.6e-08 Score=115.95 Aligned_cols=166 Identities=11% Similarity=0.030 Sum_probs=89.3
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC--CCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCC--CHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG--KLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEM--TVRE 245 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G--~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E 245 (1106)
.+++.+..+..++|.|++||||||+|+.|.. ....+ .|+|.+.+.+..... .+.-..+|++ +|.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~---p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvt 227 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQ---PEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVT 227 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCC---TTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCC---CceEEEEEECCchhh--------hhhhccCCcccceeec
Confidence 3677888899999999999999999999875 23332 466665554432211 0100112222 2222
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccc--cccCccCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADT--MVGDEMRRG 323 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt--~vg~~~~rg 323 (1106)
+...+..... ....++ +.+ ...++..|+.+..+. .+. ..
T Consensus 228 d~~~a~~~L~-----~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~ 268 (512)
T 2ius_A 228 DMKDAANALR-----WCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EA 268 (512)
T ss_dssp SHHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HH
T ss_pred CHHHHHHHHH-----HHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HH
Confidence 3322221100 001111 112 245666777654332 121 13
Q ss_pred CChhhhhHH----------HHHHHHhcCCc-cceeecCCCCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEecChh
Q 001291 324 VSGGQKKRV----------TTGEMMVGPAL-ALFMDEISTGLDSSTTFQIVNCFKQNIHINS--GTAVISLLQPAP 386 (1106)
Q Consensus 324 LSGGqkqRv----------sia~al~~~p~-vllLDEptsgLD~~~~~~i~~~l~~~~~~~~--~t~ii~i~q~~~ 386 (1106)
+||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++... +..++..+|...
T Consensus 269 ~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 269 DRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 799998863 24556677887 89999999988843 3345555555543322 344445555544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.9e-08 Score=113.65 Aligned_cols=50 Identities=20% Similarity=0.124 Sum_probs=43.9
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+|+++||+|++ +++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP--DLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC--CTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC--CCCEEEECCEEc
Confidence 479999999999 99999999999999999999996553 368888888764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.7e-08 Score=123.89 Aligned_cols=161 Identities=14% Similarity=0.106 Sum_probs=98.4
Q ss_pred CceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCC-------
Q 001291 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDI------- 939 (1106)
Q Consensus 867 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~------- 939 (1106)
+...+++++++.+.+|+.+.|+||||+|||||+++|++..... ..|.+.+.+.+... ....+++|++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE-TLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS-SCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc-cCCeEEEeCCcccc--cCCcEEEEecchHHHHHHHH
Confidence 3446889999999999999999999999999999999965432 23778887766542 2345788876421
Q ss_pred ---------------CCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH
Q 001291 940 ---------------HSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL 1004 (1106)
Q Consensus 940 ---------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl 1004 (1106)
....+++.+|+.....-..+...-. ... ....+.++..+..... ..++|+|++|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~~~---~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-ATG---AHAGALLGDVRHDPFQ-----SGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-CTT---CCHHHHHCEECCCCC---------CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-cCC---CCHHhcCceEEechhh-----cCCccccccccc
Confidence 0111111111111000000000000 000 0011122221111111 125899999999
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 001291 1005 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040 (1106)
Q Consensus 1005 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1040 (1106)
..++...+++.+|||||... |++..+..+.++|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 899999999888875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=8.6e-10 Score=120.33 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=80.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+.... ...+.+++++|... ..+.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 4788999999999 89999999999999999998653 45677777543111 11223455666532 345566
Q ss_pred HHHHH-HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCC
Q 001291 946 VYESL-FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1024 (1106)
Q Consensus 946 v~e~l-~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTs 1024 (1106)
+.|++ .++...........+...+.+.+++. .|||||+||+.|++|+..+|++ +|++.-
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 66666 33221110000011222222333321 3789999999999999999987 677653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.1e-07 Score=101.93 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=33.1
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEE-EECC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV-TYNG 216 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V-~~~G 216 (1106)
+=+++|+++.|.||||||||||+..+++...+. .|.| .+++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~ 97 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDA 97 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEES
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEec
Confidence 368999999999999999999999999876543 4555 3444
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.24 E-value=7.6e-07 Score=101.40 Aligned_cols=30 Identities=40% Similarity=0.563 Sum_probs=26.6
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988887654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.9e-07 Score=98.65 Aligned_cols=40 Identities=23% Similarity=0.191 Sum_probs=23.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHh-CCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALA-GKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~~~~ 204 (1106)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98753
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-08 Score=105.10 Aligned_cols=59 Identities=17% Similarity=0.148 Sum_probs=40.4
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-----------ccceEEEEcCC
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-----------PERTAAYISQH 234 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q~ 234 (1106)
++.+.+ ++++|+|||||||||||++|+|.+.|+ +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455566 799999999999999999999999998 899999998763211 13468888874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=91.68 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001291 1004 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1042 (1106)
Q Consensus 1004 l~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~ 1042 (1106)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999888887643
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.1e-06 Score=94.07 Aligned_cols=207 Identities=12% Similarity=0.034 Sum_probs=78.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh-CCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-GRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e 948 (1106)
+..+++||++++|++++|+||||||||||+++|+ |...+ ..+.+.+...+..... ....+|.+++...+..++..+
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~--~~~~~~~~~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~ 91 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN--IVKSVSVTTRAARKGE-KEGKDYYFVDREEFLRLCSNG 91 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C--EEECCCEESSCCCTTC-CBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC--cccccccCCCCCCccc-cCCCeEEEecHHHhhhhhhcC
Confidence 4678999999999999999999999999999999 97532 2222222222211110 011234444322211111111
Q ss_pred HHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH-HHH-HHHhcCCCeEEEeCCCCCC
Q 001291 949 SLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRL-TIA-VELVANPSIIFMDEPTSGL 1026 (1106)
Q Consensus 949 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl-~iA-~aL~~~p~illLDEPTsgL 1026 (1106)
++......... .. ......++++++.-. .-+.+... .-...-++++ .-+ ..++..|+..++||++.+.
T Consensus 92 ~~~~~~~~~~~--~~-~~~~~~i~~~~~~~~-~vild~~~------~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 92 EIIEHAEVFGN--FY-GVPRKNLEDNVDKGV-STLLVIDW------QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp CEEEEEEETTE--EE-EEECTTHHHHHHHTC-EEEEECCH------HHHHHHHHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred ceehhhhhccc--cC-CCCHHHHHHHHHcCC-eEEEEcCH------HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 11100000000 00 000111334444311 11111000 0011122332 111 2235566777788999999
Q ss_pred CHHHHHHHHHHHHHHHh-----CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCCchhHHHHHHHhCCCC
Q 001291 1027 DARAAAIVMRTVRNTVD-----TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGHHSCHLISYFEVCPDA 1098 (1106)
Q Consensus 1027 D~~~~~~i~~~l~~~~~-----~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~yf~~~~g~ 1098 (1106)
|..+...+.+.|++... ....+|++.|+++ ++.+..++++-..+ ++..+ ...+-++|.+..|+
T Consensus 162 ~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e-~~~~~l~~~i~~~~-~~~~~-------~~~~~~~~~~~~~~ 229 (231)
T 3lnc_A 162 RADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIE-ETADRISNILRAEQ-MKTCR-------QVGLRELLESRFPI 229 (231)
T ss_dssp ----------CHHHHHHHHTTGGGSSEEEECSSHH-HHHHHHHHHHHHHH-TBGGG-------EESHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHH-HHHHHHHHHHHHHh-hcccc-------CcchhhHhhccCCC
Confidence 98887777766654321 2457888888876 45566666554333 22211 22456677766655
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.04 E-value=1.9e-07 Score=97.80 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=50.0
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCCCHHHHHHHH
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 250 (1106)
+..++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .+...++++|+....+.+++.+++...
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 96 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDA 96 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHH
Confidence 556789999999999999999999999974 78899987764211 112457888875555556666666554
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.03 E-value=4.3e-06 Score=98.75 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH----hCCceEEEEecCcc
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEP----------TSGLDARAAAIVMRTVRNTV----DTGRTVVCTIHQPS 1056 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEP----------TsgLD~~~~~~i~~~l~~~~----~~g~tvi~~tH~~~ 1056 (1106)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 44677777777777776653 24678999999975
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.02 E-value=3e-06 Score=97.09 Aligned_cols=160 Identities=13% Similarity=0.010 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCC--------CCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHH
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPS--------LKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAA 251 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~--------~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 251 (1106)
.++|+|+||||||||++.|+|..... ...+|.|.++|.++. ...+.|++.|.+ ...|. . |..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp----~~lve-~--f~~ 250 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIP----PQIVD-A--FFV 250 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCC----GGGHH-H--HHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCC----HHHHH-H--HHH
Confidence 48999999999999999999986410 023789999885431 123455555422 11221 1 111
Q ss_pred HhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhH
Q 001291 252 RCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331 (1106)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqR 331 (1106)
..... ...+....+. + . .+++. ...+....+..+++.+++.+..--.|++. .--+|+|+++|
T Consensus 251 tl~~~-~~aD~il~Vv----D--~-s~~~~---------~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~ 312 (364)
T 2qtf_A 251 TLSEA-KYSDALILVI----D--S-TFSEN---------LLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKK 312 (364)
T ss_dssp HHHGG-GGSSEEEEEE----E--T-TSCHH---------HHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHH
T ss_pred HHHHH-HhCCEEEEEE----E--C-CCCcc---------hHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHH
Confidence 00000 0000000000 0 0 00000 00111123456778888765442333331 12278888888
Q ss_pred HHHH----HHH-hcCCccceeecCCCCCCHHHHHHHHHHHHHHHH
Q 001291 332 VTTG----EMM-VGPALALFMDEISTGLDSSTTFQIVNCFKQNIH 371 (1106)
Q Consensus 332 vsia----~al-~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~ 371 (1106)
+.++ +.+ ..+|++ +|+|++|......+.+.|.+...
T Consensus 313 ~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 313 LDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8877 555 333443 89999999999999988877554
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.97 E-value=1.1e-06 Score=100.85 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=82.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCC---------ceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHh-
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTG---------GYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYS- 953 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~- 953 (1106)
.++|+|++|||||||++.|+|.... ++..|.+.++|.+. .+....|++.+.+.. .+ |...-.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v---~l~DT~G~i~~lp~~----lv-e~f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI---MLVDTVGFIRGIPPQ----IV-DAFFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE---EEEECCCBCSSCCGG----GH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE---EEEeCCCchhcCCHH----HH-HHHHHHH
Confidence 4999999999999999999995421 13568888887543 122334554442211 11 111000
Q ss_pred hhhc--------CC-CCCC--hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCCeE
Q 001291 954 AWLR--------LP-PEVN--SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIA----VEL-VANPSII 1017 (1106)
Q Consensus 954 ~~~~--------~~-~~~~--~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA----~aL-~~~p~il 1017 (1106)
..++ .. .+.. .......+.++++.+++.+..--.+... ...+|+++++++.++ +++ ..+|++
T Consensus 253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 0000 00 1111 1222234567777777654320000000 123687888888877 555 334444
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 1018 FMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 1018 lLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
+|+|++|..+...+.+.|.+...
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHhc
Confidence 89999999999999999887653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-06 Score=96.53 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=26.5
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+-+++|+++.|.||+|+|||||+..+++.
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999864
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.6e-06 Score=105.83 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=58.3
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhCCceEEEE-ecCccHHHHHhcCeEEEEe
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTS-GLDARAAAIVMRTVRNTVDTGRTVVCT-IHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTs-gLD~~~~~~i~~~l~~~~~~g~tvi~~-tH~~~~~~~~~~D~v~~l~ 1070 (1106)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+.+.++...++.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi~ 266 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLLA 266 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCccc
Confidence 379999999999999999999999999996 999887766666666554445677775 89875 5667777544443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-06 Score=87.16 Aligned_cols=36 Identities=28% Similarity=0.237 Sum_probs=33.1
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 6889999999 99999999999999999999987664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=94.30 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCC----------CCCCHHHHHHHHHHHHHHHH--hcCCeEEEEEecChh
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEIS----------TGLDSSTTFQIVNCFKQNIH--INSGTAVISLLQPAP 386 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEpt----------sgLD~~~~~~i~~~l~~~~~--~~~~t~ii~i~q~~~ 386 (1106)
|+++.|..++++....|.|||+||+- .|.|......+.+++..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 56788888999999999999999993 35666554444455544321 123566666666653
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.2e-06 Score=86.40 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHH
Q 001291 331 RVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNI 370 (1106)
Q Consensus 331 Rvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~ 370 (1106)
....|++++.+|.++++| ||++|.....++++.|.+..
T Consensus 129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 356789999999999999 99999999999988776543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.87 E-value=5.1e-07 Score=94.54 Aligned_cols=41 Identities=29% Similarity=0.239 Sum_probs=31.2
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+..++|++++|+|+||||||||+++|++.. |.+.++|.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~ 63 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAF 63 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEccccc
Confidence 3556789999999999999999999999753 5677887654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.7e-07 Score=97.26 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=38.5
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh-----------hcccceEEEEccC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ-----------ETFARISGYCEQN 937 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~g~v~q~ 937 (1106)
+++|.+ ++++|+||||||||||+++|+|...+ ..|.|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP--DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC--CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhccccc--CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 466666 89999999999999999999996543 35778888765411 1124568999874
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.6e-06 Score=87.23 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=28.2
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++++|++++|+||||||||||+++|++.+.|+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~ 33 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTS 33 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998664
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=89.90 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEe--cCcc
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMD-EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI--HQPS 1056 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLD-EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~t--H~~~ 1056 (1106)
.+|++++|++. +.+...++-++++| +|++++|......+.+.+.+... +.++|++. ||+.
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 58999998776 55555677789999 99999999988888877776543 78888888 8864
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.85 E-value=2.3e-06 Score=96.16 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=62.3
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC-------c-----cceEEEE-cC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV-------P-----ERTAAYI-SQ 233 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~-----~~~~~yv-~Q 233 (1106)
+++++++.+++|++++|+||||+||||++..|++.+.+. .|+|.+.+.++.... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998775 789999887653211 0 3458899 77
Q ss_pred CCCCCCCCCHHHHHHHH
Q 001291 234 HDNHIGEMTVRETLAFA 250 (1106)
Q Consensus 234 ~d~~~~~lTV~E~l~f~ 250 (1106)
.....|..++.+++...
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.3e-05 Score=90.26 Aligned_cols=140 Identities=18% Similarity=0.166 Sum_probs=88.4
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1106)
...+-|+.+.+-++||+++.|.|+||+|||||+.-++...... | ..+.|++= +++
T Consensus 31 TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~----------g---------~~Vl~fSl------Ems 85 (338)
T 4a1f_A 31 TGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND----------D---------RGVAVFSL------EMS 85 (338)
T ss_dssp CSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT----------T---------CEEEEEES------SSC
T ss_pred CCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc----------C---------CeEEEEeC------CCC
Confidence 3456788888889999999999999999999999888653211 1 23555543 355
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
..+...=.... ...+.+....+ |
T Consensus 86 ~~ql~~Rlls~-------------------------------------------------~~~v~~~~l~~---g----- 108 (338)
T 4a1f_A 86 AEQLALRALSD-------------------------------------------------LTSINMHDLES---G----- 108 (338)
T ss_dssp HHHHHHHHHHH-------------------------------------------------HHCCCHHHHHH---T-----
T ss_pred HHHHHHHHHHH-------------------------------------------------hhCCCHHHHhc---C-----
Confidence 44432210000 00000000001 2
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
.||+++.+|++.|...+.++++++.|+|... ..+|...++++.+..++..+|++ |.+-+|..
T Consensus 109 ~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 109 RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 3999999999999999999999999998643 23555566665544424555544 77777654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.6e-06 Score=91.41 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=78.9
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 950 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l 950 (1106)
-|+.+..-+++|+++.|.|++|+|||||+.-++.... . .| ..+.|+.- .++..+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g---------~~Vl~fSl------Ems~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DD---------RGVAVFSL------EMSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TT---------CEEEEEES------SSCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cC---------CeEEEEeC------CCCHHHHH
Confidence 4666667799999999999999999999988875211 0 11 11223221 13332211
Q ss_pred HHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHH
Q 001291 951 FYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1030 (1106)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~ 1030 (1106)
.++......+++..+.+ ..||.++.+|+..|...+.++++.+.|+|...+|
T Consensus 91 ------------------~Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~--- 141 (338)
T 4a1f_A 91 ------------------LRALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE--- 141 (338)
T ss_dssp ------------------HHHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH---
T ss_pred ------------------HHHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH---
Confidence 11111111222222222 1499999999999999999999999999876543
Q ss_pred HHHHHHHHHHHHh-C-CceEEEEec
Q 001291 1031 AAIVMRTVRNTVD-T-GRTVVCTIH 1053 (1106)
Q Consensus 1031 ~~~i~~~l~~~~~-~-g~tvi~~tH 1053 (1106)
.|...++++.+ . |..+|+|-|
T Consensus 142 --~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 --QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp --HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred --HHHHHHHHHHHhcCCCCEEEEec
Confidence 44455555543 3 577777743
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.72 E-value=5.6e-07 Score=106.92 Aligned_cols=49 Identities=33% Similarity=0.537 Sum_probs=42.6
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4688999999999 89999999999999999999864 6889999877643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.3e-05 Score=83.73 Aligned_cols=40 Identities=28% Similarity=0.056 Sum_probs=25.0
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
....+++|||+.+++|+.++|+|||||||||+.+.|++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4457999999999999999999999999999999999875
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.68 E-value=2.5e-06 Score=92.76 Aligned_cols=63 Identities=17% Similarity=0.058 Sum_probs=46.7
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHh---CCCCCCCCceeEEE--------ECCccCCCCC----ccceEEEE
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALA---GKLDPSLKVSGRVT--------YNGHNMDEFV----PERTAAYI 231 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~---G~~~~~~~~~G~V~--------~~G~~~~~~~----~~~~~~yv 231 (1106)
++++.+ ++|++++|+|||||||||++++|+ |...++ +|.|. .+|.++.... ..+.++++
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d---~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 92 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLD---SGAIYRVLALAALHHQVDISTEEALVPLAAHLDVR 92 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE---HHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC---CCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEE
Confidence 455544 789999999999999999999999 988777 89998 8887764321 12467788
Q ss_pred cCCC
Q 001291 232 SQHD 235 (1106)
Q Consensus 232 ~Q~d 235 (1106)
+|.+
T Consensus 93 ~~~~ 96 (252)
T 4e22_A 93 FVSQ 96 (252)
T ss_dssp EEEE
T ss_pred EecC
Confidence 8753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.65 E-value=3e-06 Score=91.74 Aligned_cols=51 Identities=25% Similarity=0.392 Sum_probs=34.7
Q ss_pred eeeecce-eeeeeccchhhhcccCCCceEEeeeeeeeeeC---CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 843 SLTFDEV-VYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRP---GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 843 ~l~f~~v-~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+.++|+ +++++ +...+|+|+||+|++ |++++|+|++||||||+.++|++.
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4677787 76652 124589999999999 999999999999999999999874
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.4e-06 Score=89.38 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=42.3
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEE--EECCccCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRV--TYNGHNMD 220 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V--~~~G~~~~ 220 (1106)
.+..++++...++|++++|+||||||||||+++|++.+. . .|.+ .++|.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchhh
Confidence 445566677778999999999999999999999999886 3 5776 88876553
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=1.5e-05 Score=98.47 Aligned_cols=133 Identities=15% Similarity=0.103 Sum_probs=70.6
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~---------- 71 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLF---------- 71 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEE----------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEee----------
Confidence 3567889999999999999999999999632211123444 34433211 111122222222111100
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
.......+..||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 72 ----------------------------~~~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 72 ----------------------------RGHRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ----------------------------TTEEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ----------------------------CCEEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 00111111122222222 112222335677889999 99999988774
Q ss_pred HHHHHHHHHHhCCceEEEEecCccH
Q 001291 1033 IVMRTVRNTVDTGRTVVCTIHQPSI 1057 (1106)
Q Consensus 1033 ~i~~~l~~~~~~g~tvi~~tH~~~~ 1057 (1106)
.+ +.+.+.|.++|++.|.++.
T Consensus 118 ~~----~~~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 AW----TVAERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HH----HHHHHTTCCEEEEEECGGG
T ss_pred HH----HHHHHccCCEEEEecCCch
Confidence 33 2333458889999998763
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00012 Score=83.78 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-ceEEEEec
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIH 1053 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~tH 1053 (1106)
.+..++++..+++..+.+|+++++.-..+..|... ...++.++.+...| ++|+++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777764334455443 34456666665555 57777776
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.55 E-value=2.7e-05 Score=79.68 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=29.3
Q ss_pred eeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 873 NGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 873 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++++.+.+| +++|+||||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999 9999999999999999999874
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.4e-07 Score=107.04 Aligned_cols=75 Identities=21% Similarity=0.237 Sum_probs=49.7
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDI-HSPFVT 945 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~-~~~~~t 945 (1106)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.+.... ...+.++.++|... ..+.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 3578899999999 89999999999999999998643 35677887553211 11122345565543 234445
Q ss_pred HHHHH
Q 001291 946 VYESL 950 (1106)
Q Consensus 946 v~e~l 950 (1106)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=1.5e-05 Score=83.53 Aligned_cols=71 Identities=6% Similarity=0.036 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHH-HHHhcCeEEEEe
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID-IFEAFDELFLMK 1070 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~-~~~~~D~v~~l~ 1070 (1106)
.+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|.+... +...||.++++.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3678888999988888877643322 3455666666665555432 356888888876421 245689988885
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.5e-05 Score=80.32 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=23.8
Q ss_pred eEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 869 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
...++||||.+++|++++|+|++||||||+.+.|++.
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999999999999999864
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.2e-05 Score=79.28 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEEC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYN 215 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~ 215 (1106)
+|++++|+||||||||||+++|++.+++. ..|.|.+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR--FAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT--EECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc--EEEeeecc
Confidence 68999999999999999999999987642 35666543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00039 Score=79.86 Aligned_cols=44 Identities=9% Similarity=0.033 Sum_probs=35.5
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---CCceEEEEecCcc
Q 001291 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD---TGRTVVCTIHQPS 1056 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~---~g~tvi~~tH~~~ 1056 (1106)
.+|.+|++||+..- |......+.+++.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45789999999876 88888888888866654 5788999999874
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.46 E-value=6.1e-05 Score=94.65 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=58.9
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe-cCC
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL-SDG 401 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL-~~G 401 (1106)
+|+|+.+|..++..++.+++++++|||.. +||......+++.+.... ....+++++.+++...+.+++++..++ ..|
T Consensus 191 ~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~g 269 (773)
T 2xau_A 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVPG 269 (773)
T ss_dssp EEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECCC
T ss_pred ECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCcccccC
Confidence 79999999999999999999999999996 999887777766665432 123456666788888888888753333 344
Q ss_pred e
Q 001291 402 Q 402 (1106)
Q Consensus 402 ~ 402 (1106)
+
T Consensus 270 r 270 (773)
T 2xau_A 270 R 270 (773)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.46 E-value=8.2e-06 Score=88.32 Aligned_cols=39 Identities=44% Similarity=0.485 Sum_probs=36.3
Q ss_pred ceeeeceeEEEeC---ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 165 LTILKDVSGIVKP---GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 165 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++|+|+|+.+++ |+.++|+|++||||||+.++|++.+.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4699999999999 99999999999999999999998753
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=4.1e-05 Score=81.83 Aligned_cols=39 Identities=21% Similarity=0.097 Sum_probs=33.9
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
..++|++++|.|++|||||||+++|+|. .|+|.+++.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 4578999999999999999999999997 47788887654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.39 E-value=2e-05 Score=85.62 Aligned_cols=57 Identities=23% Similarity=0.140 Sum_probs=43.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhh---CCCCCceeEEEEE--------EcCccCCh----hcccceEEEEccCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLA---GRKTGGYITGDIR--------ISGYPKKQ----ETFARISGYCEQND 938 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~g~v~q~~ 938 (1106)
++|++++|+|||||||||++++|+ |... +..|.+. .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 8654 4567777 77776532 23445678888643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=80.26 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhC-Cc--eEEEEecCccHHHHHhcCeEE
Q 001291 996 LSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARA-AAIVMRTVRNTVDT-GR--TVVCTIHQPSIDIFEAFDELF 1067 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~--~~p~illLDEPTsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~tH~~~~~~~~~~D~v~ 1067 (1106)
+|.|++ .+++.+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67889998 8999876 66777888877653 43 5667777655 3556666554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.37 E-value=6.1e-05 Score=78.54 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.8
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+|++|++++|+||||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999875
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=4.4e-05 Score=81.61 Aligned_cols=42 Identities=21% Similarity=0.201 Sum_probs=34.6
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
-+...++|++++|+|+||||||||+++|+|. .|.|.+.+.|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3456679999999999999999999999986 25577777664
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.37 E-value=2.9e-05 Score=87.21 Aligned_cols=50 Identities=20% Similarity=0.141 Sum_probs=39.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
++++++|.+++|++++|+|+||+||||++..|++.... ..|.|.+.+.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D~ 143 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAADT 143 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 34789999999999999999999999999999985321 135677766654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.36 E-value=7.5e-05 Score=78.45 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=27.3
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=6.9e-05 Score=76.80 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEE
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRI 917 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i 917 (1106)
+|++++|+||||||||||++.|++..++. ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~-~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDR-FAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTT-EECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCcc-EEEeeec
Confidence 68999999999999999999999854321 3455444
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00025 Score=79.47 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=33.7
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
...+-|+++.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 53 TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 53 SGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp CSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345678888888999999999999999999999888754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00095 Score=73.81 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHh----CCceEEEEecCcc---HHH
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDAR----------AAAIVMRTVRNTVD----TGRTVVCTIHQPS---IDI 1059 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~tH~~~---~~~ 1059 (1106)
+++++.+..++.+...+|.+||+||+.+-++.. ....+...+..... .+..||.+|++++ ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 457777778888888899999999998776532 22234444443321 2356788888753 234
Q ss_pred HHhcCeEEEE
Q 001291 1060 FEAFDELFLM 1069 (1106)
Q Consensus 1060 ~~~~D~v~~l 1069 (1106)
...|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4456655443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.31 E-value=4.4e-05 Score=79.72 Aligned_cols=41 Identities=24% Similarity=0.102 Sum_probs=34.6
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.++|++++|+||||||||||++.|++.+.+. .|.|.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEeccC
Confidence 4678999999999999999999999988665 6777776544
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=8.1e-05 Score=77.83 Aligned_cols=69 Identities=12% Similarity=0.108 Sum_probs=38.4
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH--HhhcCeEEEec
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET--YNLFDDIILLS 399 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~--~~~~D~vilL~ 399 (1106)
+.|+.+|..+++.++.+|..+.++ .+.+++.....+.+.++.. .++. ++.-.+...+. ...||.+++|+
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~-vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPY-TLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSE-EEEECTTTTTTTCGGGCSEEEEEE
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCE-EEEEechhhhcCcHhhCCEEEEEE
Confidence 678999999999999988765544 2345565555555444321 2344 44333444443 56788887773
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.28 E-value=3.1e-05 Score=88.74 Aligned_cols=44 Identities=34% Similarity=0.329 Sum_probs=39.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY 214 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1106)
..+|+++|+.+++|++++|+||||||||||+++|+|.. .|++..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999853 577655
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00028 Score=79.18 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.6
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.-|+++.+-+++|+++.|.|++|+|||||+..++.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 35777777899999999999999999999888774
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=3.5e-05 Score=80.35 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=37.9
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEE--EEcCcc
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDI--RISGYP 921 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i--~i~g~~ 921 (1106)
...+..++..++|++++|+|+||||||||.+.|++... ..|.+ .++|.+
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~ 63 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDN 63 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCch
Confidence 34566777788999999999999999999999998542 12444 777654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=7.9e-05 Score=75.66 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=30.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.+|++++|+||||||||||+++|++.+ |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCcc
Confidence 468999999999999999999999863 667777644
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00055 Score=78.12 Aligned_cols=55 Identities=7% Similarity=0.130 Sum_probs=41.3
Q ss_pred CChhhhhHHHHHHHHhcCCccceee-cCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMD-EISTGLDSSTTFQIVNCFKQNIHINSGTAVISL 381 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i 381 (1106)
+|+|++|++. +.+...++-++++| ++.+++|......+++.++.... +.+++++.
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 7999998876 55556778889999 99999999988888777765421 45555544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.24 E-value=8.3e-05 Score=77.16 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+|++++|+||||||||||++.|++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3799999999999999999999999865
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0011 Score=75.25 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=26.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.||+|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999999998876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=75.56 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=27.0
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++|++++|+|+||||||||++.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999999999763
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0016 Score=71.89 Aligned_cols=27 Identities=44% Similarity=0.674 Sum_probs=23.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++.-++|.||||+|||||++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 356788999999999999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00031 Score=80.31 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=27.5
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 8999999999999999999994
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.12 E-value=6.6e-05 Score=86.01 Aligned_cols=156 Identities=12% Similarity=0.056 Sum_probs=84.4
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCC-CCCCCHHH
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIH-SPFVTVYE 948 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~-~~~~tv~e 948 (1106)
.+++++++.+++|++++|+||||||||||+++|+|.. .|.+.....+... +...+|+++|.... ....+.
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~~~--~~~~lg~~~q~~~~l~dd~~~-- 227 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPLDR--LNFELGVAIDQFLVVFEDVKG-- 227 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCTTT--HHHHHGGGTTCSCEEETTCCC--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccchh--HHHHHHHhcchhHHHHHHHHH--
Confidence 4789999999999999999999999999999999853 2444331212111 11124566665432 112221
Q ss_pred HHHHhhh-hcCCCCCChHHHHHHHHHHHHH---cCCCc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhcCCCe
Q 001291 949 SLFYSAW-LRLPPEVNSETRKMFIEEVMEL---VELKP-LR---QSLVG----LPGVNGLSTEQRKRLTIAVELVANPSI 1016 (1106)
Q Consensus 949 ~l~~~~~-~~~~~~~~~~~~~~~v~~~l~~---~~l~~-~~---~~~~~----~~g~~~LS~Gqrqrl~iA~aL~~~p~i 1016 (1106)
... .+.............+...++- +-+.. .. +.+.. ......+++|+++|+..+++++.+|++
T Consensus 228 ----~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 228 ----TGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp ----STTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred ----HHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 111 0100000000011122333321 00110 00 10000 001235899999999998888889998
Q ss_pred EE-EeCCCCCCCHHHHHHHHHHHHHHHhCCceEE
Q 001291 1017 IF-MDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049 (1106)
Q Consensus 1017 ll-LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi 1049 (1106)
++ ||+|+. ..++++.++|+++.
T Consensus 304 liyLd~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 304 KHCLERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHHHHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EEEEeCCHH-----------HHHHHHHHcCccHH
Confidence 76 999986 23455555565543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=5.1e-05 Score=93.82 Aligned_cols=47 Identities=34% Similarity=0.282 Sum_probs=34.2
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~ 221 (1106)
+.+++|+.++|+|++|+|||||++.|++...+. ...|+| .+|..+.+
T Consensus 4 ~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d 50 (665)
T 2dy1_A 4 EGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTD 50 (665)
T ss_dssp --CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSC
T ss_pred CccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccccc
Confidence 456789999999999999999999999765431 226777 56654433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00019 Score=75.32 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=25.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00024 Score=70.40 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=23.2
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34555555 89999999999999999986
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=69.87 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=24.8
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+.++.+.+| +++|+|||||||||+|.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 445556665 999999999999999999873
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.04 E-value=9.7e-05 Score=88.79 Aligned_cols=42 Identities=33% Similarity=0.412 Sum_probs=36.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee-EEE-ECCcc
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-RVT-YNGHN 218 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G-~V~-~~G~~ 218 (1106)
.+++|++++|+|+||||||||+++|+|.+.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 47799999999999999999999999999876 65 674 77744
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0013 Score=74.05 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=25.9
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.|++|+|||||...++.
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHH
Confidence 5789999999999999999999988875
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.03 E-value=4.9e-05 Score=85.10 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=23.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++|+||||||||||+++|++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 8999999999999999999998763
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00021 Score=72.17 Aligned_cols=27 Identities=37% Similarity=0.538 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999864
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0028 Score=71.28 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=29.1
Q ss_pred eeecee-EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 167 ILKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 167 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 344432 57899999999999999999999988865
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00036 Score=72.32 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=24.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999754
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00098 Score=78.30 Aligned_cols=71 Identities=15% Similarity=0.210 Sum_probs=47.8
Q ss_pred cCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEE-EecCCEEEEEecCCC
Q 001291 1012 ANPSIIFMDEPTSGLDA-RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL-MKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~-~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~-l~~gG~~~~~G~~~~ 1083 (1106)
.+|++||+||+..-.+. .++..+..++..+.+.|+.||+++|++..++....+++.- + ..|.++..+++..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~-~~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF-QMGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-HSSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-cCCeEEEeCCCCH
Confidence 38999999999887664 6778888999888878999999999854221111122211 2 2356666666653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0051 Score=69.64 Aligned_cols=34 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred eecee-EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 168 LKDVS-GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 168 L~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44433 56899999999999999999999998875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00028 Score=79.68 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=42.8
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEee--------------eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLN--------------GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~--------------~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+.|+|+++.++. .+..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.
T Consensus 133 ri~Fe~ltp~yP~------------er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 133 KILFENLTPLHAN------------SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp SCCTTTSCEESCC------------SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred CceeccccccCCC------------CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4678888877653 234667 89999999999999999999999999999873
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00047 Score=69.86 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=29.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~ 41 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDF 41 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCcc
Confidence 469999999999999999999998742 445666644
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0019 Score=75.10 Aligned_cols=25 Identities=40% Similarity=0.422 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999863
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00055 Score=78.29 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.1
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45778999999999999999999874
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00012 Score=83.18 Aligned_cols=48 Identities=21% Similarity=0.173 Sum_probs=39.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.+++++++.+.+|.+++|+|+||+|||||++.|+|.+.+. .|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 4777888888999999999999999999999999987654 55565544
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00034 Score=79.57 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=33.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeecC
Confidence 467899999999999999999999987665 67777766543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00022 Score=83.83 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.0
Q ss_pred cCCccceeecCCCCCCH-HHHHHHHHHHHHHHHhcCCeEEEEEecChhH
Q 001291 340 GPALALFMDEISTGLDS-STTFQIVNCFKQNIHINSGTAVISLLQPAPE 387 (1106)
Q Consensus 340 ~~p~vllLDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 387 (1106)
.++++||+||+..-.+. .+...+...+..+. ..+..+|++.+.+..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELH-DSGKQIVICSDREPQK 240 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH-TTTCEEEEEESSCGGG
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHH-HCCCeEEEEECCCHHH
Confidence 37899999999887764 56667777777653 3455666655544444
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00019 Score=80.38 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=32.6
Q ss_pred ceEEeeeeeeeeeCCe------EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 868 KLVLLNGVSGAFRPGV------LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+.|++++..|..++ ++||+||||||||||+++|.+..
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456777887777776 99999999999999999999853
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00057 Score=72.91 Aligned_cols=38 Identities=24% Similarity=0.224 Sum_probs=27.7
Q ss_pred eeeceeEEEe---CceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 167 ILKDVSGIVK---PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 167 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
-|.++|+.+. +|.+++|.||+||||||+++.|+..+.+
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4677788777 8999999999999999999999998753
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0048 Score=68.50 Aligned_cols=29 Identities=38% Similarity=0.651 Sum_probs=25.9
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++++.-++|.||||+|||||.++|++.+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46788899999999999999999999763
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0047 Score=68.50 Aligned_cols=29 Identities=41% Similarity=0.487 Sum_probs=25.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
|...++|.||||+|||||.++|++.+...
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 45688999999999999999999987553
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0064 Score=69.56 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=24.7
Q ss_pred Cce--EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 177 PGR--LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~--~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345 8999999999999999999998765
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.00062 Score=68.69 Aligned_cols=26 Identities=35% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0009 Score=69.85 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=27.3
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
--.+++|.+++|+|++|||||||.+.|++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999999999864
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00052 Score=69.93 Aligned_cols=39 Identities=36% Similarity=0.398 Sum_probs=30.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee--EEEECCcc
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG--RVTYNGHN 218 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 218 (1106)
++|++++|.|++||||||+++.|++.+.+ .| .|.++|..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC----HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH----TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh----CCCcEEEECChH
Confidence 47999999999999999999999998744 24 55556543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0018 Score=71.99 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=26.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+.++++..+.|.||+|+|||||.++|++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 346788889999999999999999999743
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0018 Score=76.00 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC------C---CCceeEEEECCccC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP------S---LKVSGRVTYNGHNM 219 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~------~---~~~~G~V~~~G~~~ 219 (1106)
-.++|+|+||+|||||++.|+|.... . -..+|.+.++|.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 46899999999999999999998531 0 02368999999754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00089 Score=69.72 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=25.5
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|++++|+|+||||||||++.|++..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999999853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=68.61 Aligned_cols=30 Identities=37% Similarity=0.508 Sum_probs=24.4
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+.++.+.+| +++|+|||||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 345556665 999999999999999998853
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=69.02 Aligned_cols=28 Identities=29% Similarity=0.698 Sum_probs=22.9
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34555554 89999999999999999884
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0041 Score=72.21 Aligned_cols=35 Identities=29% Similarity=0.179 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY 214 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~ 214 (1106)
++.+++++||+||||||++..|++.+.+. .++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~---G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKR---GYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEE
Confidence 68899999999999999999999987654 455544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00037 Score=84.12 Aligned_cols=47 Identities=28% Similarity=0.471 Sum_probs=38.7
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 3556666666 89999999999999999999999998765 67776655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0025 Score=64.25 Aligned_cols=27 Identities=41% Similarity=0.662 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999974
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0025 Score=64.28 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=22.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|..++|+|++|+|||||++.|+|.
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999999985
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.012 Score=69.14 Aligned_cols=38 Identities=29% Similarity=0.557 Sum_probs=32.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777779999999999999999999998888754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00067 Score=71.18 Aligned_cols=41 Identities=29% Similarity=0.359 Sum_probs=34.1
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCcee--EEEECCcc
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSG--RVTYNGHN 218 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G--~V~~~G~~ 218 (1106)
+++|.+++|.|++||||||+.+.|++.+.+. .| .+.++|..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d~ 64 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGDN 64 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECChH
Confidence 4578999999999999999999999988654 57 77777543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0024 Score=65.47 Aligned_cols=35 Identities=37% Similarity=0.445 Sum_probs=20.9
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|+++|+..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999998888 5689999999999999999974
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.023 Score=64.44 Aligned_cols=30 Identities=43% Similarity=0.604 Sum_probs=26.3
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+=+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999999998887653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.017 Score=61.54 Aligned_cols=42 Identities=5% Similarity=0.096 Sum_probs=29.2
Q ss_pred cCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--CCceEEEEec
Q 001291 1012 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD--TGRTVVCTIH 1053 (1106)
Q Consensus 1012 ~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~--~g~tvi~~tH 1053 (1106)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766666555543321 1258888898
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0021 Score=68.45 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=25.5
Q ss_pred Eeeeeeeeee---CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 871 LLNGVSGAFR---PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 871 ~L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-|.++++.+. +|.+++|.|++||||||+++.|+...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566666666 89999999999999999999998743
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0018 Score=66.27 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.2
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46777788999999999999999999999976
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.002 Score=67.15 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=26.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998763
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0009 Score=75.86 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=33.2
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 477889999999999999999999999999999874
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.004 Score=63.84 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=27.1
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCC------CCceeEEEEEEcC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK------TGGYITGDIRISG 919 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g 919 (1106)
.+++++++..++. .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~ 66 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGN 66 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETT
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECC
Confidence 4788999988877 67899999999999999998732 1223345566655
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0012 Score=68.23 Aligned_cols=35 Identities=34% Similarity=0.478 Sum_probs=30.3
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|+++|+..++++ ++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcC
Confidence 47788888878875 689999999999999999874
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0023 Score=67.55 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=27.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC---CCCCCceeEEEE
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL---DPSLKVSGRVTY 214 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~V~~ 214 (1106)
+.+++|+|||||||||+.+.|++.+ .++ +|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d---~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD---SGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE---HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc---Ccceee
Confidence 4689999999999999999999876 333 566654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.008 Score=70.58 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=29.5
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-|+.+.+-+++|+++.|.|++|+|||||..-++.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~ 222 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQ 222 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4566667799999999999999999999888875
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.00065 Score=77.61 Aligned_cols=77 Identities=14% Similarity=0.111 Sum_probs=35.8
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
+.+++++++.| +|+|++|+|||||++.|.|..... .|.+..++.............+..|.+.....+++.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~ 100 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVV 100 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEE
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEE
Confidence 45778888877 999999999999999998874432 444433333221110011234444443333345666
Q ss_pred HHHHHH
Q 001291 245 ETLAFA 250 (1106)
Q Consensus 245 E~l~f~ 250 (1106)
+|.-++
T Consensus 101 DTpG~g 106 (361)
T 2qag_A 101 DTPGYG 106 (361)
T ss_dssp C-----
T ss_pred Eecccc
Confidence 665543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0021 Score=65.27 Aligned_cols=40 Identities=28% Similarity=0.220 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
.+++|+|++|||||||++.|.+.+.+....-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5789999999999999999998765432224677766544
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0014 Score=78.68 Aligned_cols=42 Identities=36% Similarity=0.487 Sum_probs=33.0
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEE-EEE-EcCcc
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITG-DIR-ISGYP 921 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~-i~g~~ 921 (1106)
.+++|++++|+|+||||||||+++|+|...+ ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 4779999999999999999999999996432 133 464 77754
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0016 Score=66.65 Aligned_cols=30 Identities=40% Similarity=0.517 Sum_probs=26.7
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++|.+++|.|++||||||+.+.|++.+.+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 478999999999999999999999987643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.019 Score=61.06 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+..|+.+.++|||||||||++..+.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 4568999999999999999887765
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.093 Score=59.46 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.|++|+|||||...++.
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999999887774
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0089 Score=70.06 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=28.8
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-|+.+..-+++|+++.|.|++|+|||||..-++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4566666789999999999999999999877764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0019 Score=74.86 Aligned_cols=45 Identities=24% Similarity=0.101 Sum_probs=38.5
Q ss_pred eceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 169 KDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 169 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.+
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~D 135 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAAD 135 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeecc
Confidence 567777 89999999999999999999999998775 6778776644
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.042 Score=58.43 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
-++|+|++|+|||||++.|+|....
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcC
Confidence 4789999999999999999997654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.0032 Score=63.90 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|++++|+|++||||||+.+.|++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999999874
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0032 Score=72.19 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=25.7
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345667888999999999999999999997
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0032 Score=66.44 Aligned_cols=56 Identities=21% Similarity=0.097 Sum_probs=36.7
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCCC-CceeEEEEEE--------cCccCCh----hcccceEEEEccC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRI--------SGYPKKQ----ETFARISGYCEQN 937 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~g~v~q~ 937 (1106)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.+... ..+++.+|+++|+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 56899999999999999999987431 1133466655 5655431 1233456777664
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0022 Score=72.49 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=31.5
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999865
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0061 Score=71.49 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=30.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCC------C----ceeEEEEEEcCcc
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKT------G----GYITGDIRISGYP 921 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~------~----~~~~G~i~i~g~~ 921 (1106)
-.++|+|+||+|||||++.|+|... + .+..|.+.++|.+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~ 229 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK 229 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE
Confidence 4689999999999999999999532 1 1345788888864
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0037 Score=65.04 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=24.8
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+|.+++|+||+|||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999999999998643
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0021 Score=69.46 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=31.8
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
..+++.+++|+|+|||||||+.+.|+..+. .|.+.++|-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----CCcEEEecHH
Confidence 356788999999999999999999998764 2456666643
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0046 Score=63.21 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.0
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56788888999999999999999999999864
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.00076 Score=75.87 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=31.1
Q ss_pred eeeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 167 ILKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 167 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++++++..+++|+. ++|+||+||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 56666666777777 99999999999999999999754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.012 Score=64.49 Aligned_cols=28 Identities=32% Similarity=0.408 Sum_probs=23.5
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+.++.-+.|.||+|+|||||.+.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3456678999999999999999998643
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0014 Score=72.65 Aligned_cols=46 Identities=24% Similarity=0.135 Sum_probs=36.9
Q ss_pred ec-eeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCcc
Q 001291 169 KD-VSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218 (1106)
Q Consensus 169 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~ 218 (1106)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEecC
Confidence 35 677666 9999999999999999999999988664 5667665533
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0023 Score=77.12 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=38.0
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
.+++++++.+ +|+.+.|+||||+|||||+++|++... ...|.+.++|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~ 144 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGV 144 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC-
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEeccc
Confidence 3567788888 899999999999999999999998543 23566766664
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0027 Score=65.60 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=30.5
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++|+..+++ .++|+|++|+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4788888888887 4789999999999999999873
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.016 Score=61.20 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=40.7
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEec---------CccHHHHHhcCeEEEEe
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH---------QPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH---------~~~~~~~~~~D~v~~l~ 1070 (1106)
+|+++++||.-- |+.. +.+.++.+++.|.+||++-| ..+.++.+.+|+|..|+
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 6643 44556666777999999999 45567888999998853
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0057 Score=62.29 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.0
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+|.+++|.|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.00078 Score=71.98 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=40.8
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCC-CCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEIST-GLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.... ....+++++.+.+.+.+.++|+.
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TTSEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CCCeEEEEecCCCHHHHHHHcCC
Confidence 345544442 33578889999999976 687776655554443322 12245666667776666666654
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.045 Score=61.13 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhh--------------CCCCCcee-EEEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLA--------------GRKTGGYI-TGDIRISGYPKKQETFARISGYCEQNDIHSPF 943 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~--------------g~~~~~~~-~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~ 943 (1106)
+++|+++.|.|++|+|||||...++ |...+|.. ...++++... .
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~---------------------~ 153 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEG---------------------T 153 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSS---------------------C
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCC---------------------C
Q ss_pred CCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCeEEEe
Q 001291 944 VTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVAN---PSIIFMD 1020 (1106)
Q Consensus 944 ~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~---p~illLD 1020 (1106)
.....-......+..+ .+++++.+-+....+ +..+.+.+..++.++.+ ++++++|
T Consensus 154 ~~~~~l~~~~~~~g~~-----------~~~~~~~l~~~~~~~-----------~~~~~~~l~~l~~~~~~~~~~~lvVID 211 (322)
T 2i1q_A 154 FRPERIMQMAEHAGID-----------GQTVLDNTFVARAYN-----------SDMQMLFAEKIEDLIQEGNNIKLVVID 211 (322)
T ss_dssp CCHHHHHHHHHHHTCC-----------HHHHHHTEEEEECSS-----------HHHHHHHHHTHHHHHHTTCEEEEEEEE
T ss_pred CCHHHHHHHHHHcCCC-----------HHHHhcCEEEEeCCC-----------HHHHHHHHHHHHHHHhhccCccEEEEE
Q ss_pred CCCCCCCH------------HHHHHHHHHHHHHHhC-CceEEEEec
Q 001291 1021 EPTSGLDA------------RAAAIVMRTVRNTVDT-GRTVVCTIH 1053 (1106)
Q Consensus 1021 EPTsgLD~------------~~~~~i~~~l~~~~~~-g~tvi~~tH 1053 (1106)
.-++-... ..-..+.+.|++++++ |++||++.|
T Consensus 212 sl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq 257 (322)
T 2i1q_A 212 SLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQ 257 (322)
T ss_dssp CSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECc
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0045 Score=64.20 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0045 Score=68.73 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+..++|+|+||+|||||++.|.|.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999999996
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.005 Score=69.92 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 36889999999999999999999973
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.007 Score=61.40 Aligned_cols=22 Identities=41% Similarity=0.694 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.013 Score=61.79 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=37.7
Q ss_pred CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEe---------cChhHHHhhcCeEEEec
Q 001291 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLL---------QPAPETYNLFDDIILLS 399 (1106)
Q Consensus 341 ~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~---------q~~~~~~~~~D~vilL~ 399 (1106)
+++++++||.-. |+.. +++.++.++. .+.++|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~-~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAE-NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHH-TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHh-CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 579999999964 6643 4445555554 3556666555 56789999999999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.025 Score=63.25 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC---CCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWL 956 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~---~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~ 956 (1106)
+.+..+.|.||+|+|||||++.|++.. ......-+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~------------------------------------------ 72 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS------------------------------------------ 72 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE------------------------------------------
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE------------------------------------------
Q ss_pred cCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCH--HHHHHH
Q 001291 957 RLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIV 1034 (1106)
Q Consensus 957 ~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~--~~~~~i 1034 (1106)
.........+.+..-.+..+... ..+|.+||+||+-. +.. .++..+
T Consensus 73 -------~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~vL~iDEi~~-l~~~~~~~~~l 120 (324)
T 1l8q_A 73 -------ADDFAQAMVEHLKKGTINEFRNM------------------------YKSVDLLLLDDVQF-LSGKERTQIEF 120 (324)
T ss_dssp -------HHHHHHHHHHHHHHTCHHHHHHH------------------------HHTCSEEEEECGGG-GTTCHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCcHHHHHHH------------------------hcCCCEEEEcCccc-ccCChHHHHHH
Q ss_pred HHHHHHHHhCCceEEEEecCc
Q 001291 1035 MRTVRNTVDTGRTVVCTIHQP 1055 (1106)
Q Consensus 1035 ~~~l~~~~~~g~tvi~~tH~~ 1055 (1106)
...+..+.+.|..+|++++.+
T Consensus 121 ~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 121 FHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHTTCEEEEEESSC
T ss_pred HHHHHHHHHCCCeEEEEecCC
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.05 Score=61.80 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.2
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+..-+.|.||.|+|||||.+.|+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999864
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=59.30 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0051 Score=63.80 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0073 Score=60.20 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999853
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0082 Score=59.80 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.008 Score=60.69 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|.++.|.|+|||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0057 Score=63.38 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
..+++|.|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999865
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0079 Score=60.18 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998765
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.079 Score=60.14 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+..-++|.||+|+|||||.++|+...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHc
Confidence 45578999999999999999999865
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.024 Score=64.58 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+..+.|.||+|+|||||++.++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 35667899999999999999999863
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0087 Score=61.16 Aligned_cols=27 Identities=44% Similarity=0.587 Sum_probs=23.7
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 357899999999999999999998654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0061 Score=65.79 Aligned_cols=35 Identities=37% Similarity=0.719 Sum_probs=25.1
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.++++++..++| ++|.||||+|||||+++|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 345555555555 88999999999999999999764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0025 Score=71.71 Aligned_cols=34 Identities=24% Similarity=0.400 Sum_probs=31.5
Q ss_pred EeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g 904 (1106)
+++.+++.+++|++ ++|+|++||||||+.++|++
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 67888889999988 99999999999999999987
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=60.37 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|.+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987653
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.01 Score=60.54 Aligned_cols=29 Identities=34% Similarity=0.543 Sum_probs=25.4
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
....+|.+++|+|++||||||+.+.|++.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34457999999999999999999999874
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.01 Score=68.07 Aligned_cols=30 Identities=27% Similarity=0.576 Sum_probs=26.2
Q ss_pred eeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 876 SGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 876 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-..+..|..++|+|++|+|||||++.|+|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 345678899999999999999999999985
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0023 Score=72.37 Aligned_cols=40 Identities=35% Similarity=0.630 Sum_probs=34.5
Q ss_pred ceeeeceeEEEeCceE--EEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 165 LTILKDVSGIVKPGRL--TLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3467777778888888 999999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.0094 Score=60.47 Aligned_cols=37 Identities=35% Similarity=0.366 Sum_probs=27.2
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCC-CceeEEEEEEcC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKT-GGYITGDIRISG 919 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g 919 (1106)
.+++|+|++|||||||++.|.+... .+...|.|..++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 5789999999999999999987421 122346666654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.011 Score=62.81 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-+++|.||+||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999654
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.012 Score=59.68 Aligned_cols=23 Identities=39% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999964
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.01 Score=62.04 Aligned_cols=30 Identities=30% Similarity=0.283 Sum_probs=26.2
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..+++|.+++|+|++||||||+.+.|++..
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999999998753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.013 Score=59.45 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.014 Score=59.37 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=22.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++..+.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36688999999999999999998754
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=60.37 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57889999999999999999999876
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.016 Score=60.11 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999987653
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=58.24 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001291 180 LTLLLGPPSSGKTTLLLAL 198 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L 198 (1106)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6889999999999999999
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.012 Score=62.59 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=24.5
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999999999999854
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=63.26 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+++|+||||||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999865
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.016 Score=58.41 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.014 Score=59.43 Aligned_cols=25 Identities=36% Similarity=0.438 Sum_probs=22.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999999984
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.013 Score=60.73 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0029 Score=72.26 Aligned_cols=30 Identities=30% Similarity=0.417 Sum_probs=26.1
Q ss_pred EEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 870 VLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 870 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 31 ~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 31 SVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 4677888876 99999999999999999874
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.013 Score=60.06 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+.|+||||||||||++.|....+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 478999999999999999987653
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.016 Score=63.89 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNG 216 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G 216 (1106)
.|.++.|.|||||||||+.+.|+..++ .|.+.+++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 467999999999999999999987653 24455554
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.56 E-value=0.015 Score=58.99 Aligned_cols=26 Identities=46% Similarity=0.378 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+..++|.|++||||||+.+.|+-.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 46678999999999999999998543
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.19 Score=59.85 Aligned_cols=33 Identities=21% Similarity=0.128 Sum_probs=27.4
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
|+.+..-+++|+++.|.|++|+|||||..-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 455555689999999999999999999877663
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.016 Score=59.23 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998654
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.061 Score=62.92 Aligned_cols=38 Identities=29% Similarity=0.292 Sum_probs=32.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
..+-|+.+.+-+++|+++.|.|+||+|||||+.-++..
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 34567777777999999999999999999998877754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.018 Score=59.77 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=23.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=58.96 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 57899999999999999999865
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.34 E-value=0.25 Score=55.09 Aligned_cols=120 Identities=23% Similarity=0.266 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
..+..-+.|.||.|+|||||.+.++....+ ..-+.+++.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~-------------------------------------- 80 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSS-------------------------------------- 80 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECC--------------------------------------
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhH--------------------------------------
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCC-------CCCCCHHHH
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP-------TSGLDARAA 1031 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEP-------TsgLD~~~~ 1031 (1106)
++.....+ ...+.-+-.+..+-..+|.|||+||. ..+......
T Consensus 81 -----------------------~l~~~~~g-------~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~ 130 (322)
T 1xwi_A 81 -----------------------DLVSKWLG-------ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAAR 130 (322)
T ss_dssp -----------------------SSCCSSCC-------SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHH
T ss_pred -----------------------HHHhhhhh-------HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHH
Q ss_pred HHHHHHHHHH-----HhCCceEEEEecCc---cHHHHHhcCeEEEE
Q 001291 1032 AIVMRTVRNT-----VDTGRTVVCTIHQP---SIDIFEAFDELFLM 1069 (1106)
Q Consensus 1032 ~~i~~~l~~~-----~~~g~tvi~~tH~~---~~~~~~~~D~v~~l 1069 (1106)
..+.+++..+ ...+..||.+|..+ +..+...||+.+.+
T Consensus 131 ~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i 176 (322)
T 1xwi_A 131 RIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYI 176 (322)
T ss_dssp HHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEEC
T ss_pred HHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEe
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=57.80 Aligned_cols=23 Identities=43% Similarity=0.473 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|||||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999764
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.021 Score=59.89 Aligned_cols=27 Identities=30% Similarity=0.497 Sum_probs=23.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=59.52 Aligned_cols=24 Identities=33% Similarity=0.314 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.29 E-value=0.023 Score=57.89 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.+++|.|++||||||+.+.|+-.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.021 Score=60.77 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=23.3
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+|.+++|+|++||||||+.+.|++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999986
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.021 Score=59.45 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=24.2
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.+++|.|++||||||+.+.|+-.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.022 Score=57.33 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
|.++.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998643
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.0076 Score=61.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.5
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.21 E-value=0.013 Score=64.78 Aligned_cols=46 Identities=26% Similarity=0.155 Sum_probs=33.6
Q ss_pred ee-eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 873 NG-VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 873 ~~-vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
++ +++..+ |++++++|+||+||||++..|++.... ..+.+.+.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D 135 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGAD 135 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 45 778776 999999999999999999999974321 12345554444
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.52 Score=53.48 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=0.0
Q ss_pred eeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001291 879 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRL 958 (1106)
Q Consensus 879 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~ 958 (1106)
+++|+++.|.|+.|+|||||...++ .........+.|+.-+....
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la------------------~~~~~~g~~vlyi~~E~s~~----------------- 115 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIV------------------AQAQKAGGTCAFIDAEHALD----------------- 115 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH------------------HHHHHTTCCEEEEESSCCCC-----------------
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHH------------------HHHHHCCCeEEEEECCCChh-----------------
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCeEEEeCCCCCC----------
Q 001291 959 PPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGL---------- 1026 (1106)
Q Consensus 959 ~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~--~~p~illLDEPTsgL---------- 1026 (1106)
....+.+++..-.-..... -+. .+.+.+++.++ .++++|++|..++=.
T Consensus 116 -------------~~~a~~~g~d~~~l~i~~~-----~~~--e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~g 175 (366)
T 1xp8_A 116 -------------PVYARALGVNTDELLVSQP-----DNG--EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMG 175 (366)
T ss_dssp -------------HHHHHHTTCCGGGCEEECC-----SSH--HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC-----
T ss_pred -------------HHHHHHcCCCHHHceeecC-----CcH--HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccc
Q ss_pred CH---HHHHHHHHHHHHH----HhCCceEEEEec
Q 001291 1027 DA---RAAAIVMRTVRNT----VDTGRTVVCTIH 1053 (1106)
Q Consensus 1027 D~---~~~~~i~~~l~~~----~~~g~tvi~~tH 1053 (1106)
|. ...+.+.+.++++ .+.+++||++.|
T Consensus 176 d~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq 209 (366)
T 1xp8_A 176 DSLPGLQARLMSQALRKLTAILSKTGTAAIFINQ 209 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEe
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.021 Score=56.98 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++|+|++||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999854
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.016 Score=58.41 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999987654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.0047 Score=69.75 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=32.9
Q ss_pred eEEeeeeeeeeeCCeE--EEEEcCCCCCHHHHHHhhhCC
Q 001291 869 LVLLNGVSGAFRPGVL--TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 869 ~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+++.++..++.|++ +.+.||+|+||||+++++++.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3477888888999988 999999999999999999974
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.023 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|++||||||+.+.|+-.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.052 Score=72.57 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEE-CCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHHHHHh
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTY-NGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAFAARC 253 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~-~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 253 (1106)
+++|+++.|.||||+|||||+..++...... .|.|.| ++.........+..++-.++-......++.+-+....++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHc---CCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHH
Q ss_pred cCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhhhhHHH
Q 001291 254 QGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVT 333 (1106)
Q Consensus 254 ~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGqkqRvs 333 (1106)
T Consensus 806 -------------------------------------------------------------------------------- 805 (1706)
T 3cmw_A 806 -------------------------------------------------------------------------------- 805 (1706)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Q ss_pred HHHHHhcCCccceeecCCCCCC----------------HHHHHHHHHHHHHHHHhcCCeEEEEEecChh-----------
Q 001291 334 TGEMMVGPALALFMDEISTGLD----------------SSTTFQIVNCFKQNIHINSGTAVISLLQPAP----------- 386 (1106)
Q Consensus 334 ia~al~~~p~vllLDEptsgLD----------------~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~----------- 386 (1106)
.--..|+++++|+..+-.. .....+++..|+.+++..+.++|++.+-...
T Consensus 806 ---v~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~Gdp~~p 882 (1706)
T 3cmw_A 806 ---ARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETT 882 (1706)
T ss_dssp ---HHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEE
T ss_pred ---HHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCccccccCCcccc
Q ss_pred ----HHHhhcCeEEEecCCeEEEEcC
Q 001291 387 ----ETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 387 ----~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
.+...+|-++.|..++....|.
T Consensus 883 ~gs~~Leq~ADvvl~L~R~~~~~~g~ 908 (1706)
T 3cmw_A 883 TGGNALKFYASVRLDIRRIGAVKEGE 908 (1706)
T ss_dssp SSCSHHHHHEEEEEEEEEEEEEEETT
T ss_pred CCcchhhheeeEEEEEEecccccccc
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.022 Score=58.38 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+.|+||||||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1106 | ||||
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-28 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-17 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-28 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 6e-24 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-20 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-27 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-27 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-25 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-22 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-16 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-23 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-20 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-24 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-17 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-22 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-19 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 7e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-20 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-19 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 5e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-14 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 4e-05 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 7e-05 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 1e-04 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 2e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 4e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 9e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.004 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.004 |
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 113 bits (283), Expect = 1e-28
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 18/214 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
+ G+ G + L+G +GAGKTT + +AG R G I + +
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+ P +TVYE+L A+ R E ++ LK + L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1050 CTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
+ A ++++ G+ V G
Sbjct: 194 LVEQ----NALGALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 80.7 bits (199), Expect = 2e-17
Identities = 45/251 (17%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPS-LKVSGRVTYNGHNMDEFV 223
+ +K + V G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
A + + E+TV E L A +
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK---------------------------- 110
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + + L + G +SGG+++ + G ++
Sbjct: 111 ------DKEGIKRDLEWIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L MDE S GL ++ ++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQK--INQEGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 112 bits (282), Expect = 3e-28
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 19/221 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L+GVS + G +T ++G +G+GK+TL++V+ G + G + + + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMF----------IEEVMELVE 979
Q +TV E+L +NS K + +++E ++
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 980 LKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1039
L L G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1040 NTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T + H+ + D L++M G+ + G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 6e-24
Identities = 57/254 (22%), Positives = 89/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
L VS V G +TL++GP SGK+TL+ + G L GRV + ++ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPD 280
Q + EMTV E L C G + + ++
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKE--------- 124
Query: 281 IDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVG 340
EE L+ L L D G+ +SGGQ K V G ++
Sbjct: 125 ------------EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400
+ MDE G+ I N + G + + N D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLE--LKAKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 111 bits (279), Expect = 4e-28
Identities = 52/216 (24%), Positives = 102/216 (47%), Gaps = 12/216 (5%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG 919
+ E+ + L V+ + G ++MG SG+GK+T+++++ + T G + +I+ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 920 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
+ T R G+ Q P +T E++ + ++ E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
EL+ + N LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHK----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1038 VRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 89.9 bits (223), Expect = 1e-20
Identities = 45/257 (17%), Positives = 92/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
++ + LK+V+ +K G ++GP SGK+T+L + P+ G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MDEFVPERTA-------AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREK 271
++ + ++ Q N I +T E + + G ++ RR++
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEERRKR 124
Query: 272 AAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKR 331
A + + A+ +SGGQ++R
Sbjct: 125 AL--------------------------ECLKMAELEERFANHKPNQ-----LSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNL 391
V + + D+ + LDS T +I+ K+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 109 bits (275), Expect = 2e-27
Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
T + ++ +K G +LLGP GKTT L +AG +P+ GR+ + ++ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 -ERTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP-------------------------- 109
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+E + + ++L ++ + +SGGQ++RV +V
Sbjct: 110 --------KDEIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L MDE + LD+ + K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (270), Expect = 9e-27
Identities = 51/221 (23%), Positives = 89/221 (40%), Gaps = 24/221 (10%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
+N ++ + G L+G SG GKTT + ++AG T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 925 -ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R Q+ P +TVYE++ + ++ + + + EL++++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1042
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYPA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1043 DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
T + H D EA D + +M R G+ + +G
Sbjct: 185 KLKVTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 103 bits (259), Expect = 2e-25
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 14/216 (6%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
K +L G+S G + L+G +GAGKTT + +++ + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 925 ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
++ Y + + E L + A +S + +E E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
+ V S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1045 GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T++ + H ++ D + L+ G V G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 93.9 bits (233), Expect = 6e-22
Identities = 57/276 (20%), Positives = 94/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
ILK +S ++ G + L+GP +GKTT L ++ + PS SG VT G N+ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
E + +Y+ + M E L F A
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS-------------------------- 105
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 106 --------SSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+DE ++GLD ++ KQ G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQ--ASQEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 101 bits (252), Expect = 7e-25
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 16/187 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARIS 931
L ++ G + G +G GKTTL+ ++ + G+I +G P +
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKI 72
Query: 932 GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLP 991
+ + I ++V + L A L K I + +E VE+ L++
Sbjct: 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK----- 122
Query: 992 GVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1050
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G ++
Sbjct: 123 -LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
Query: 1051 TIHQPSI 1057
+ + S
Sbjct: 182 SREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.9 bits (189), Expect = 2e-16
Identities = 33/215 (15%), Positives = 72/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
+L+ ++ ++ G + GP GKTTLL ++ L P G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVIS 380
+D+ +D + +++ + I G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILE-ILKEKGIVIIS 181
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 101 bits (254), Expect = 9e-25
Identities = 50/223 (22%), Positives = 90/223 (40%), Gaps = 15/223 (6%)
Query: 863 GVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISG 919
+ LN VS G + ++G SGAGK+TL+ + R T G + ++
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTT 71
Query: 920 YPKKQETFARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV 978
+ + T AR G Q+ TV+ ++ L + K + E++ LV
Sbjct: 72 LSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLV 128
Query: 979 ELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1038
L S LS Q++R+ IA L +NP ++ DE TS LD ++ +
Sbjct: 129 GLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 1039 RNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
++ G T++ H+ + + D + ++ G +
Sbjct: 184 KDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 97.3 bits (242), Expect = 4e-23
Identities = 52/280 (18%), Positives = 93/280 (33%), Gaps = 57/280 (20%)
Query: 159 PSTKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHN 218
+ + L +VS V G++ ++G +GK+TL+ + P+ G V +G
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MDEFVPERTA------AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKA 272
+ I QH N + TV +A + +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVKRRV 121
Query: 273 AGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRV 332
L ++GL D+ + +SGGQK+RV
Sbjct: 122 ---------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLF 392
+ L DE ++ LD +TT I+ K I+ G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKD-INRRLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++S+G+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 102 bits (255), Expect = 1e-24
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 28/226 (12%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L GVS R G + +++G SG+GK+T + + + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 929 RIS-----------GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMEL 977
Q+ +TV E++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 978 VELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1037
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1038 VRNTVDTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
++ + G+T+V H ++ A + + G+ G
Sbjct: 192 MQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 90.3 bits (224), Expect = 2e-20
Identities = 57/286 (19%), Positives = 101/286 (35%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP 224
+LK VS + G + ++G SGK+T L + PS G + NG N++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSR 268
+ + QH N MTV E + A + L++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPI------QVLGLSKHDA 125
Query: 269 REKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328
RE+A YL +G+D A + +SGGQ
Sbjct: 126 RERA---------------------------LKYLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ +Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ--LAEEGKTMVVVTHEMGFA 212
Query: 389 YNLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
++ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 101 bits (252), Expect = 5e-24
Identities = 35/203 (17%), Positives = 78/203 (38%), Gaps = 23/203 (11%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQETFAR 929
L ++ G + A+ G +G+GKT+L+ ++ G + G I R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRV------------ 99
Query: 930 ISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVG 989
+C Q P T+ E++ + E ++ + ++ + +++G
Sbjct: 100 --SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG 153
Query: 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1049
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 154 -EGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRI 212
Query: 1050 CTIHQPSIDIFEAFDELFLMKRG 1072
+ D++ ++ +G
Sbjct: 213 LVTSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 94.6 bits (235), Expect = 9e-22
Identities = 52/293 (17%), Positives = 103/293 (35%), Gaps = 69/293 (23%)
Query: 136 ALPSFTKFFTTIFEDLL------NYLHILPSTKKHLT----------ILKDVSGIVKPGR 179
+ + T F+ F +LL N S + +++ +LK+++ ++ G
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGE 63
Query: 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239
+ + G SGKT+LL+ + G+L+ S G + ++G ++ SQ + I
Sbjct: 64 MLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR----------VSFCSQ-FSWIM 109
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVIT 299
T++E + F KA ++
Sbjct: 110 PGTIKENIIFGVSYDEY--------RYKSVVKACQLQ----------------------- 138
Query: 300 DYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
+ +T++G+ +SGGQ+ R++ + A +D LD T
Sbjct: 139 ---QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTE 194
Query: 360 FQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQG-PREL 411
Q+ + N +++ E D I++L G + G EL
Sbjct: 195 EQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFYGTFSEL 244
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 99 bits (249), Expect = 7e-24
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 13/212 (6%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
P ++ L ++ G AL+G SG+GK+T+ ++ G I + G+ ++
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 925 ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ QN + ++ R + M+ +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKM 138
Query: 982 PLR-QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1040
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 139 DNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE 197
Query: 1041 TVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ RT + H+ S E DE+ +++ G
Sbjct: 198 -LQKNRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.4 bits (214), Expect = 3e-19
Identities = 46/251 (18%), Positives = 96/251 (38%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
L++++ + G+ L+G SGK+T+ + D G + +GH++ E+
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLA 85
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + + H+ TV +A+A T ++ + A
Sbjct: 86 SLRNQVALVSQNVHLFNDTVANNIAYA------RTEEYSREQIEEAARMAYAMDF----- 134
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ +D DT++G E +SGGQ++R+ ++ +
Sbjct: 135 ---------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIARALLRDSP 172
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE ++ LD+ + I + + + ++ T D+I+++ DG I
Sbjct: 173 ILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRLSTIEQADEIVVVEDGII 228
Query: 404 VYQGPRELVLE 414
V +G +L
Sbjct: 229 VERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (245), Expect = 1e-23
Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 30/232 (12%)
Query: 859 MKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRIS 918
M+LQ V E L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +
Sbjct: 4 MQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFA 58
Query: 919 GYP---KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVM 975
G P A Y Q V+ L + +TR + +V
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ--------HDKTRTELLNDVA 110
Query: 976 ELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDA 1028
+ L LS + +R+ +A ++ ++ +DEP + LD
Sbjct: 111 GALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 1029 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + + + G +V + H + +L+K GG+ + G
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 3e-17
Identities = 49/259 (18%), Positives = 81/259 (31%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
T L +SG V+ G + L+GP +GK+TLL +AG + G + + G ++ +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSG---KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ + + L LD +SGG+ +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
L +DE LD + + G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 98.3 bits (245), Expect = 2e-23
Identities = 53/250 (21%), Positives = 95/250 (38%), Gaps = 43/250 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER 226
ILKD++ ++ G +G GK+TL+ + D + SG++ +GHN+ +F+
Sbjct: 33 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGS 89
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
I Q DN + TV+E + G E+ K A
Sbjct: 90 LRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF------ 136
Query: 285 MKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
++ L DT VG E +SGGQK+R++ + +
Sbjct: 137 --------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFLNNPPI 175
Query: 345 LFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404
L +DE ++ LD + I ++ + ++ T D I+++ +G IV
Sbjct: 176 LILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAHRLSTITHADKIVVIENGHIV 231
Query: 405 YQGPRELVLE 414
G ++
Sbjct: 232 ETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.2 bits (237), Expect = 3e-22
Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 25/225 (11%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQ 924
+++ +L ++ + G A +G+SG GK+TL++++ +G I I G+ K
Sbjct: 27 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKD 84
Query: 925 ETFARISGYCE--QNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP 982
+ Q D TV E++ L ++ + E ++
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENI------LLGRPTATDEE---VVEAAKMANAHD 135
Query: 983 LRQSL-------VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1035
+L VG GV LS Q++RL+IA + NP I+ +DE TS LD + +I+
Sbjct: 136 FIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 194
Query: 1036 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ + RT + H+ S D++ +++ G V G
Sbjct: 195 EALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 95.4 bits (237), Expect = 2e-22
Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 13/219 (5%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP--- 921
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLAL 69
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
R G Q D ++ +++ + +V + + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISEL 125
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ + GLS QR+R+ IA LV NP I+ DE TS LD + ++MR +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK- 184
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+ GRTV+ H+ S + D + +M+ G+ V G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 82.7 bits (204), Expect = 4e-18
Identities = 53/251 (21%), Positives = 94/251 (37%), Gaps = 45/251 (17%)
Query: 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE- 225
IL +++ +K G + ++G SGK+TL + P +G+V +GH++ P
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNW 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
R + Q DN + ++ + ++ A V ++ K AG
Sbjct: 75 LRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSV-------EKVIYAAKLAGA-------- 118
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+ + E G+SGGQ++R+ +V
Sbjct: 119 -------------------HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L DE ++ LD + I+ + I G VI + T D II++ G+I
Sbjct: 160 ILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH-RLSTVKNADRIIVMEKGKI 215
Query: 404 VYQGPRELVLE 414
V QG + +L
Sbjct: 216 VEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 94.6 bits (235), Expect = 3e-22
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 20/219 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQET 926
++V+ ++ G +G SG GK+TL+ ++AG +T +GD+ I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTP 68
Query: 927 FARIS-GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQ 985
A G Q+ P ++V E++ + L + E + +V E+++L L
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLD 125
Query: 986 SLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1044
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1045 GRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
GRT++ H D EA D++ ++ GR VG
Sbjct: 181 GRTMIYVTH----DQVEAMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 86.9 bits (215), Expect = 1e-19
Identities = 55/271 (20%), Positives = 96/271 (35%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+ + KD++ + G + +GP GK+TLL +AG + SG + M++
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDID 282
P + Q ++V E ++F + G
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAG--------------------------- 101
Query: 283 VFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPA 342
+ E N + +VL L D +SGGQ++RV G +V
Sbjct: 102 -------AKKEVINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402
+DE + LD++ Q+ +H G +I + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEI-SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.3 bits (229), Expect = 3e-21
Identities = 48/257 (18%), Positives = 105/257 (40%), Gaps = 42/257 (16%)
Query: 161 TKKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMD 220
+ + +L+ ++ ++PG +T L+GP SGK+T+ L P+ G++ +G +
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLP 79
Query: 221 EFVPE---RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKP 277
++ R A + Q + + +++E +A+ G+
Sbjct: 80 QYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQ 114
Query: 278 DPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEM 337
P ++ E A V + + + GL DT V + + +SGGQ++ V
Sbjct: 115 KPTME--------EITAAAVKSGAHSFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARA 165
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397
++ L +D+ ++ LD+++ Q+ ++ S + ++ D I+
Sbjct: 166 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILF 223
Query: 398 LSDGQIVYQGPRELVLE 414
L G I G + ++E
Sbjct: 224 LEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (222), Expect = 2e-20
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFA 928
L G++ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 929 RISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-RQSL 987
R Q ++ E++ Y + E + + P +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK--SGAHSFISGLPQGYDTE 144
Query: 988 VGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1046
V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R
Sbjct: 145 VDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSR 203
Query: 1047 TVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
+V+ S + E D + ++ GG G
Sbjct: 204 SVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 89.2 bits (221), Expect = 2e-20
Identities = 57/223 (25%), Positives = 92/223 (41%), Gaps = 22/223 (9%)
Query: 867 DKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQ 924
++ + +S + G L+G SG GKTT + ++AG + G I ++ P+K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 925 ETFARIS---GYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
Q+ P +TVY+++ + LR +V + + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLT 130
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
L LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNRKPR-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1042 V-DTGRTVVCTIHQPSIDIFEAF---DELFLMKRGGREVYVGP 1080
G T + H D EA D + +M R G VG
Sbjct: 186 QRQLGVTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.9 bits (202), Expect = 7e-18
Identities = 54/277 (19%), Positives = 98/277 (35%), Gaps = 58/277 (20%)
Query: 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV 223
+T ++++S VK G +LLGP GKTT L +AG +PS G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAA-------YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIK 276
+ Q MTV + +AF + + V + ++
Sbjct: 72 KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQ-------EIDQRV---- 120
Query: 277 PDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGE 336
++LGL + + +SGGQ++RV G
Sbjct: 121 -----------------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGR 152
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396
+V MDE + LD+ ++ + + G I + E + D I
Sbjct: 153 AIVRKPQVFLMDEPLSNLDAKLRVRMRAEL-KKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
Query: 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+++ G + G + E ++ P VA F+
Sbjct: 212 VMNRGVLQQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 88.8 bits (220), Expect = 3e-20
Identities = 47/211 (22%), Positives = 90/211 (42%), Gaps = 12/211 (5%)
Query: 865 PEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYP 921
+ + +L +S +P + A G SG GK+T+ +L + T G IT I
Sbjct: 12 DDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNIS 70
Query: 922 KKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELK 981
+ + G+ Q+ + ++ F +E + +
Sbjct: 71 LEN--WRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 982 PLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1041
+ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + +
Sbjct: 129 L--NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS- 184
Query: 1042 VDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072
+ GRT + H+ S D+++ +++G
Sbjct: 185 LMKGRTTLVIAHRLS--TIVDADKIYFIEKG 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 86.5 bits (214), Expect = 2e-19
Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE 225
IL+D+S +P + GP GK+T+ L P+ +G +T +G +D E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDV 283
+ I D+ I T+RE L + + +L+ PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 FMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPAL 343
+T VG E +SGGQ++R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403
L +DE + LDS + + + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 88.2 bits (218), Expect = 5e-20
Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYITGDIRISGYPKKQE 925
K+V L+ V+ G ++G SGAGKTT M ++AG + G + D R+ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 926 T--FARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL 983
R G Q P +T +E++ + + R +EEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 984 RQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1042
LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1043 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
G T++ H P+ DIF D + ++ G+ V VG
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.1 bits (210), Expect = 6e-19
Identities = 47/278 (16%), Positives = 97/278 (34%), Gaps = 57/278 (20%)
Query: 162 KKHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDE 221
K + L +V+ ++ G +LGP +GKTT + +AG PS +G + ++ +
Sbjct: 15 KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVAS 71
Query: 222 FVPE------RTAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGI 275
R + Q +T E +AF +++ R++
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM-------KMSKEEIRKRV--- 121
Query: 276 KPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTG 335
+ K+L + + R +SG Q++RV
Sbjct: 122 ------------------------EEVAKILDIHHVLNHFP-----RELSGAQQQRVALA 152
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395
+V L +DE + LD+ + + G ++ + + + + D +
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211
Query: 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+L G++V G E + +++ P VA +
Sbjct: 212 GVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 84.7 bits (209), Expect = 7e-19
Identities = 57/267 (21%), Positives = 102/267 (38%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPER- 226
L ++S V+ G ++LGP +GKT L +AG P SGR+ +G ++ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMK 286
A++ Q+ + M V++ L F R + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKI----------KDPKRVLDT----------- 111
Query: 287 AASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALF 346
+ L ++ D +SGG+++RV +V L
Sbjct: 112 ----------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQ 406
+DE + LD T + +H + V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 76.3 bits (187), Expect = 5e-16
Identities = 44/211 (20%), Positives = 82/211 (38%), Gaps = 17/211 (8%)
Query: 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISG-YPKKQETFARI 930
L+ +S G ++G +GAGKT ++++AG I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 931 SGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGL 990
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1049
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1050 CTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080
H + + D + ++ G+ + VG
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 75.0 bits (184), Expect = 2e-15
Identities = 50/265 (18%), Positives = 92/265 (34%), Gaps = 56/265 (21%)
Query: 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTA- 228
+V +LLGP +GK+ L +AG + P G V NG ++ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAA 288
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 289 STEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMD 348
+ + D +SGG+++RV +V L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408
E + +D T ++ + + ++ + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.8 bits (173), Expect = 5e-14
Identities = 46/204 (22%), Positives = 86/204 (42%), Gaps = 20/204 (9%)
Query: 881 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIT-GDIRISGYPKKQETFARISGYCEQN 937
L+G +GAGK+ ++++AG + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 938 DIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997
P ++VY ++ Y V R + E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLS 128
Query: 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1056
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1057 IDIFEAFDELFLMKRGGREVYVGP 1080
+ DE+ +M GR V G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.8 bits (120), Expect = 1e-07
Identities = 22/198 (11%), Positives = 45/198 (22%), Gaps = 42/198 (21%)
Query: 886 ALMGVSGAGKTTLMDVLAG---RKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSP 942
+ G G GKTTL+ + ++ G+ T ++R K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 943 FVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002
+ + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1062
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1063 FDELFLMKRGGREVYVGP 1080
E+ + G + + P
Sbjct: 146 VKEIRRLP-GAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.4 bits (101), Expect = 4e-05
Identities = 13/105 (12%), Positives = 24/105 (22%), Gaps = 5/105 (4%)
Query: 182 LLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE--RTAAYISQHDNHIG 239
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVF 284
+ V E+ + R K + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIII 105
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.3 bits (103), Expect = 7e-05
Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 22/152 (14%)
Query: 936 QNDIHSPFVTVYESLF-----------YSAWLRLPPEVNSETRKMFIEEVMELVELKPLR 984
+ + +Y L +A L + E + L K +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 985 QSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1044
G V L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1045 GRTVVCTIHQPSIDIFEAFDELF---LMKRGG 1073
+ + +FE D L ++
Sbjct: 386 DLQFIVISLKN--TMFEKSDALVGVYRQQQEN 415
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 43.1 bits (101), Expect = 1e-04
Identities = 29/147 (19%), Positives = 51/147 (34%), Gaps = 15/147 (10%)
Query: 79 QERQRLINKLVTVTEVDNEKFLLKLKNRIERVGIVLPTV--EVRFEHLTIEAEAFLASKA 136
++++ + N KN+ + TV + R + L + E L ++
Sbjct: 41 IKKEQPSHYKYHEKHYANAAIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRF 100
Query: 137 LPSFTK----FFTTIFEDLLNYLHILPSTKKHL--------TILKDVSGIVKPGRLTLLL 184
+ F +T D+ ++ + L LK + + R L
Sbjct: 101 NDLLDRMDIMFGSTGSADIEEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFK 160
Query: 185 GPPSSGKTTLLLALAGKLD-PSLKVSG 210
GP SGKTTL AL +L V+
Sbjct: 161 GPIDSGKTTLAAALLELCGGKALNVNL 187
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 2e-04
Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 7/186 (3%)
Query: 172 SGIVKPGRLTLLLGPPSSGKTTLLL--ALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAA 229
G ++ G +T + G +GKT + A+ +L F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAAS 289
++ ++ A A + + + A + D ++ S
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGEEANVITDY-----YLKVLGLDICADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALA 344
GE + L L + ++ +++ V G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 4e-04
Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 3/135 (2%)
Query: 185 GPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALC---ARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLK 304
+ A E+ + ++ F + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLDICADTMVGDE 319
L +D + D
Sbjct: 126 ELVIDRHVIAVASDV 140
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 9e-04
Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 20/97 (20%)
Query: 160 STKKHLTILKDVS-----------GIVKPGRLTLLLGPPSSGKTTLLLALAGKL------ 202
+T K + IL+ + +V G + L+ P +GK+ L L LA ++
Sbjct: 1 ATHKPINILEAFAAAPPPLDYVLPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDL 59
Query: 203 -DPSLKVSGRVTYNGH-NMDEFVPERTAAYISQHDNH 237
+ +G V Y + + R A +
Sbjct: 60 LEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAE 96
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.2 bits (87), Expect = 0.003
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 4/117 (3%)
Query: 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGRVTYNGHNMDEFVPERTA 228
G V+ G +T L G +GK+ L LA G+ Y F P R
Sbjct: 28 GGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT-FRPVRLV 86
Query: 229 AYISQHDNHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFM 285
+ + + A A + ++ + + I D + ++
Sbjct: 87 SIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 37.3 bits (85), Expect = 0.004
Identities = 14/63 (22%), Positives = 28/63 (44%)
Query: 179 RLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHI 238
+L ++ GP GK+T LA +LD S + G + + P + ++ +I
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 239 GEM 241
++
Sbjct: 63 TDL 65
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 37.3 bits (85), Expect = 0.004
Identities = 13/122 (10%), Positives = 30/122 (24%), Gaps = 8/122 (6%)
Query: 178 GRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNH 237
R+ +L G S+GK+ ++ L L G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 238 IGE---MTVRETLAFAARCQGVGTRYEMLTEL-----SRREKAAGIKPDPDIDVFMKAAS 289
+ A ++ ++ + +E+ D D+
Sbjct: 63 SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCD 122
Query: 290 TE 291
Sbjct: 123 GA 124
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1106 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.61 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.36 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.32 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.24 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.96 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.86 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.57 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.47 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.4 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.97 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.92 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.59 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.45 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.27 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.73 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.58 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.47 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.45 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.45 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.39 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.34 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.19 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.19 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.07 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.06 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.06 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.01 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.99 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.93 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.89 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.79 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.78 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.76 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.71 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.64 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.61 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.58 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.49 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.47 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.34 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.3 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.29 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.29 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.27 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.22 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.22 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.19 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.15 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.09 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.06 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.03 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.98 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 94.97 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 94.93 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.91 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 94.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.86 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.85 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.82 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.73 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 94.72 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.71 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.7 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.64 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.63 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.63 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.6 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.57 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 94.56 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.54 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.51 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.49 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.48 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.42 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.41 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.4 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.38 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.36 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.36 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.34 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.34 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.29 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.27 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.26 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.25 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.23 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 94.21 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.19 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.18 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.16 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.14 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.1 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 94.09 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.07 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.06 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.06 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 93.99 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 93.98 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.96 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.95 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.83 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.82 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.8 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 93.79 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.78 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.78 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.76 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.75 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 93.75 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.7 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.63 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.57 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 93.52 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 93.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.41 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.32 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.32 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.22 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.22 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.12 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.04 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 93.04 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.03 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.96 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 92.94 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.84 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 92.81 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.76 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.74 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.72 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.7 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.66 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 92.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.58 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.47 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.42 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.38 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.36 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.34 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.33 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 92.3 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.28 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 92.22 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.14 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.03 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.02 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.01 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.93 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 91.93 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 91.92 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.91 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 91.89 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.87 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 91.85 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.82 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.82 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.75 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 91.75 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.75 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.73 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 91.68 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.67 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.65 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 91.64 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.64 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 91.63 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.61 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.58 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.55 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 91.5 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 91.41 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 91.36 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.27 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.25 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.23 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.15 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.14 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 90.97 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 90.95 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.95 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.92 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.91 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.89 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 90.83 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 90.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 90.79 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 90.76 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.71 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.7 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.68 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 90.66 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.65 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.65 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 90.65 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.55 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.55 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.51 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.44 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.42 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.35 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.29 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.22 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 90.22 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 90.2 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.2 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.2 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 90.16 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.13 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.12 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.11 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.1 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 90.01 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 89.92 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 89.91 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 89.9 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 89.89 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 89.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 89.85 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.83 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 89.79 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.78 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 89.73 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 89.73 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 89.69 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.69 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.68 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 89.62 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 89.55 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 89.5 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.46 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.42 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 89.38 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 89.36 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 89.3 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.29 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 89.29 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.23 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.22 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.22 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 89.2 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.19 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 89.09 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 89.04 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 89.04 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 89.04 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 89.03 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 88.92 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 88.9 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 88.88 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 88.7 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 88.67 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 88.67 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 88.63 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.62 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 88.6 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.51 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.46 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.4 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 88.38 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.37 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 88.32 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 88.29 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 88.22 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 88.12 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.1 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.08 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 87.97 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 87.93 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 87.91 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 87.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 87.86 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 87.85 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.84 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.79 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 87.75 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 87.74 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.71 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 87.69 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.65 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 87.56 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 87.49 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.42 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 87.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 87.39 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.32 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.3 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 87.26 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 87.18 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.17 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.16 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 87.15 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.13 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 86.97 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.93 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 86.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.87 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 86.87 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 86.76 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 86.69 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.67 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.48 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 86.46 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 86.41 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 86.31 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 86.25 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 86.2 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.14 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.1 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 86.09 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 85.87 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 85.86 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.85 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 85.82 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 85.81 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 85.77 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 85.76 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 85.75 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.67 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 85.65 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 85.54 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 85.41 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 85.36 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 85.33 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 85.23 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 85.23 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.15 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 85.02 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.98 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.98 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 84.92 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 84.92 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 84.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 84.81 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 84.63 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 84.63 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 84.6 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 84.49 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.44 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.13 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.13 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 83.85 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 83.8 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 83.75 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 83.69 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 83.53 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.2 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 82.92 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 82.82 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.54 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 82.49 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 82.39 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 82.32 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 82.26 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 81.9 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.89 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 81.8 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 81.73 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 81.72 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.45 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.04 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 80.86 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 80.42 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 80.26 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 80.19 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-48 Score=409.15 Aligned_cols=208 Identities=25% Similarity=0.354 Sum_probs=151.0
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 242 (1106)
.+++|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEECCCCchhhceeeeeccccccccchh
Confidence 357999999999999999999999999999999999999998 9999999999977654 467999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
|+||+.|+..+++.. .++.+.+++++++.++|++.+|+.+.+
T Consensus 89 v~eni~~~~~~~~~~----------------------------------~~~~~~~v~~~l~~~~l~~~~~~~~~~---- 130 (232)
T d2awna2 89 VAENMSFGLKLAGAK----------------------------------KEVINQRVNQVAEVLQLAHLLDRKPKA---- 130 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHhCCChhhhhCChhh----
Confidence 999999987765421 112345678899999999999998876
Q ss_pred CCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCe
Q 001291 323 GVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQ 402 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 402 (1106)
|||||||||+|||||+.+|++|+|||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||++|++|+
T Consensus 131 -LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 131 -LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHS-CCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999987644 5666778999999999999999999999
Q ss_pred EEEEcCHHHHHH
Q 001291 403 IVYQGPRELVLE 414 (1106)
Q Consensus 403 iv~~G~~~~~~~ 414 (1106)
++++|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEeCHHHHHh
Confidence 999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.4e-47 Score=404.82 Aligned_cols=215 Identities=22% Similarity=0.342 Sum_probs=185.1
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++|++++|+ +..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred eEEEEEEEEEEC-------------CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC--CCCEEEEcceec
Confidence 367888887763 56899999999999999999999999999999999998764 589999999987
Q ss_pred Ch-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHH
Q 001291 923 KQ-ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQR 1001 (1106)
Q Consensus 923 ~~-~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqr 1001 (1106)
.. ...+|.+|||+|++.+++.+||+||+.|...++ ..+.++.+++++++++.++|.+..++.+ .+||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 54 234567999999999999999999999987655 3567778888999999999999888874 46999999
Q ss_pred HHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1002 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1002 qrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||+||||++ ++.++|||+++|++ |++++.|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999654 999999999998 58889999999985 79999998
Q ss_pred CC
Q 001291 1081 LG 1082 (1106)
Q Consensus 1081 ~~ 1082 (1106)
+.
T Consensus 221 ~~ 222 (239)
T d1v43a3 221 PT 222 (239)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2e-47 Score=405.50 Aligned_cols=207 Identities=24% Similarity=0.356 Sum_probs=179.1
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTV 243 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1106)
+.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||+++....+ +|.+|||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CCEEEEcceecccCCcccceEEEEeechhhcccchH
Confidence 57999999999999999999999999999999999999998 9999999999876554 4679999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCC
Q 001291 244 RETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRG 323 (1106)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rg 323 (1106)
+||+.|++++++.. ..+.+.+++++++.+||++.+|..+..
T Consensus 96 ~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T d1v43a3 96 YENIAFPLKIKKFP----------------------------------KDEIDKRVRWAAELLQIEELLNRYPAQ----- 136 (239)
T ss_dssp HHHHHTTCC--CCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999987665431 122345688899999999999988765
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
|||||||||+|||||+.+|++|+|||||+|||+.++.++++.++++.+.. +++++.++|+..++.++||+|++|++|+|
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~-g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL-KVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644 55666789999999999999999999999
Q ss_pred EEEcCHHHHHH
Q 001291 404 VYQGPRELVLE 414 (1106)
Q Consensus 404 v~~G~~~~~~~ 414 (1106)
+++|+++++.+
T Consensus 216 v~~G~~~el~~ 226 (239)
T d1v43a3 216 LQIGSPTEVYL 226 (239)
T ss_dssp EEEECHHHHHH
T ss_pred EEEcCHHHHHh
Confidence 99999999853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-47 Score=405.35 Aligned_cols=214 Identities=26% Similarity=0.361 Sum_probs=154.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEECC
Confidence 46788887763 46899999999999999999999999999999999998764 5899999999875
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..+|.+|||+|++.+++.+||+||+.|+...+. .+.++.++++.++++.++|.+..++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCCh-----hhCCHHHHH
Confidence 43 345679999999999999999999999876553 345566778999999999999888874 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|++|||||||+|||+.++..|++.|+++.+ .|.|||++|||++ ++.++|||+++|++ |++++.|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEeCH
Confidence 99999999999999999999999999999999999999864 5999999999997 58889999999984 799999986
Q ss_pred C
Q 001291 1082 G 1082 (1106)
Q Consensus 1082 ~ 1082 (1106)
.
T Consensus 216 ~ 216 (232)
T d2awna2 216 L 216 (232)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.6e-47 Score=402.22 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=185.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------c-cceEEEEcCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------P-ERTAAYISQHDNH 237 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~-~~~~~yv~Q~d~~ 237 (1106)
+++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... + ++.+|||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CCEEEECCEEecccchhhhcccccccceecccchhh
Confidence 56999999999999999999999999999999999999998 999999998874322 1 4679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
++.+||+||+.|+.+.++.. ..+.+.+++++++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~----------------------------------~~e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVP----------------------------------RQEIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------------------------------HHHHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred cchhhhhHhhhhhHHHcCCC----------------------------------HHHHHHHHHHHHHHcCChhHhcCChh
Confidence 99999999999998776531 11234568899999999999998887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++|+.++|+.+++..+||+|++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHCSEEEE
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999986644 56677789999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999864
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-46 Score=400.53 Aligned_cols=215 Identities=26% Similarity=0.342 Sum_probs=190.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred cEEEEeEEEEEC-------------CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCCEEEECCEEe
Confidence 467889887763 46799999999999999999999999999999999998764 589999999876
Q ss_pred Chh-------cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCC
Q 001291 923 KQE-------TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNG 995 (1106)
Q Consensus 923 ~~~-------~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~ 995 (1106)
... ..++.+|||+|++.++|.+||+||+.|+..++ ..+.++.+++++++++.++|.+..++.+ .+
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 321 12467999999999999999999999998766 3456778888999999999999888774 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
||||||||++|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||+||||++ ++...|||+++|++ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999997 57888999999985 79
Q ss_pred EEEEecCC
Q 001291 1075 EVYVGPLG 1082 (1106)
Q Consensus 1075 ~~~~G~~~ 1082 (1106)
+++.|++.
T Consensus 218 iv~~G~~~ 225 (240)
T d1g2912 218 LQQVGSPD 225 (240)
T ss_dssp EEEEECHH
T ss_pred EEEEcCHH
Confidence 99999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.3e-47 Score=405.10 Aligned_cols=208 Identities=21% Similarity=0.287 Sum_probs=185.5
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC------ccceEEEEcCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV------PERTAAYISQHDNH 237 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~ 237 (1106)
++.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.... .+|.+|||+|++.+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCC---CceEEECCEEeecCchhhcchhhccceEEeccccc
Confidence 467999999999999999999999999999999999999998 999999999875321 14679999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCccccccccc
Q 001291 238 IGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVG 317 (1106)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 317 (1106)
+|.+||+||+.|+++..+.. ..+.+.+++++++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~----------------------------------~~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMS----------------------------------KEEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCC----------------------------------HHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cccccHHHHhhhhhHhhcCC----------------------------------HHHHHHHHHHHHhhcChHhhhhCChh
Confidence 99999999999987765431 11234568889999999999999887
Q ss_pred CccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 318 DEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 318 ~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.+.. +++++.++|+..++.++||+|++
T Consensus 140 ~-----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~-g~tvi~vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 E-----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGV 213 (242)
T ss_dssp G-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHH-CCEEEEEESCHHHHHHHCSEEEE
T ss_pred h-----CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhcc-CCEEEEEECCHHHHHHhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999986644 56677789999999999999999
Q ss_pred ecCCeEEEEcCHHHHHH
Q 001291 398 LSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1106)
|++|+|++.|+++++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEEcCHHHHHh
Confidence 99999999999999854
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-47 Score=403.88 Aligned_cols=207 Identities=24% Similarity=0.337 Sum_probs=185.8
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc------cceEEEEcCCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP------ERTAAYISQHDN 236 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1106)
....+|+|||++|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++..... ++.+|||+|++.
T Consensus 16 ~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~ 92 (240)
T d3dhwc1 16 RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFN 92 (240)
T ss_dssp CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCC
T ss_pred eeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcccc---CCceEEcCeEeeeCChhhhhhhhccccccccccc
Confidence 3457999999999999999999999999999999999999998 9999999999876543 257999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccc
Q 001291 237 HIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMV 316 (1106)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1106)
+++.+||+||+.|+.++.+... ++...+++++|+.+||++.+|..+
T Consensus 93 l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~ 138 (240)
T d3dhwc1 93 LLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP 138 (240)
T ss_dssp CCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCB
T ss_pred cCCCccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh
Confidence 9999999999999987665311 123456788999999999999888
Q ss_pred cCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEE
Q 001291 317 GDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDII 396 (1106)
Q Consensus 317 g~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 396 (1106)
++ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+.. +++++.++|+..++..+||||+
T Consensus 139 ~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~-g~tvi~vTHdl~~~~~~~dri~ 212 (240)
T d3dhwc1 139 SN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVKRICDCVA 212 (240)
T ss_dssp SC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHH-CCEEEEEBSCHHHHHHHCSEEE
T ss_pred hh-----CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhcc-CCEEEEEcCCHHHHHHhCCEEE
Confidence 76 99999999999999999999999999999999999999999999987643 5667778999999999999999
Q ss_pred EecCCeEEEEcCHHHH
Q 001291 397 LLSDGQIVYQGPRELV 412 (1106)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1106)
+|++|+|++.|+++++
T Consensus 213 vl~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 213 VISNGELIEQDTVSEV 228 (240)
T ss_dssp EEETTEEEEEEETTTT
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999999987
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=5e-47 Score=399.83 Aligned_cols=214 Identities=25% Similarity=0.361 Sum_probs=189.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.+|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.+..+ ++.+|||+|++.+|+.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CCEEEEccEeccccchhHhcceeeccccccCccccHH
Confidence 4899999999999999999999999999999999999998 9999999999987655 46799999999999999999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.|+.+.++... ..+++++++.+||.+..|..+++ |
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----L 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----S
T ss_pred HHHHHHHhhccccH-------------------------------------HHHHHHHHHHhcchhhHhCChhh-----C
Confidence 99999987654311 12467788999999999988876 9
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+. .+++|+.++|+..++.++||||++|++|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~-~g~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK-NKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhc-CCcEEEEEcCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998654 4566777899999999999999999999999
Q ss_pred EEcCHHHHHHHHHhcCCCCCCCCChhHHH
Q 001291 405 YQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1106)
Q Consensus 405 ~~G~~~~~~~~f~~~G~~~p~~~~~ad~l 433 (1106)
++|+++++.+ .|.+..+++|+
T Consensus 208 ~~g~~~el~~--------~P~~~~v~~fl 228 (229)
T d3d31a2 208 QVGKPEEIFE--------KPVEGRVASFV 228 (229)
T ss_dssp EEECHHHHHS--------SCCTTHHHHHH
T ss_pred EEcCHHHHHh--------CCCCHHHHhcc
Confidence 9999999853 45544455553
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=4.7e-47 Score=402.72 Aligned_cols=217 Identities=27% Similarity=0.388 Sum_probs=191.5
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.++||+++|+. ++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEeEEEEECC-----------CCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC--CCceEEECCEEe
Confidence 3778999988742 346799999999999999999999999999999999998764 589999999876
Q ss_pred Ch------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCC
Q 001291 923 KQ------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 923 ~~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~L 996 (1106)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+.++.+++++++++.++|.+..+..+ .+|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhh---cCCHHHHHHHHHHHHhhcChHhhhhCCh-----hhC
Confidence 32 123567999999999999999999999986543 4567778889999999999999888875 469
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGRE 1075 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~ 1075 (1106)
||||||||+|||||+.+|+||||||||+|||+.++..+++.|+++.++ |.|||++|||++ ++.++|||+++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999654 999999999997 58899999999985 799
Q ss_pred EEEecCC
Q 001291 1076 VYVGPLG 1082 (1106)
Q Consensus 1076 ~~~G~~~ 1082 (1106)
++.|++.
T Consensus 220 v~~g~~~ 226 (242)
T d1oxxk2 220 VQVGKPE 226 (242)
T ss_dssp EEEECHH
T ss_pred EEEcCHH
Confidence 9999864
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-46 Score=396.85 Aligned_cols=219 Identities=23% Similarity=0.372 Sum_probs=188.2
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++||+++|+... ....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEeEEEEeCCCC---------eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC--CcceeEECCEEcC
Confidence 57889988876421 124589999999999999999999999999999999998764 5899999998864
Q ss_pred hh------cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCc-ccccccCCCCCCC
Q 001291 924 QE------TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKP-LRQSLVGLPGVNG 995 (1106)
Q Consensus 924 ~~------~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~-~~~~~~~~~g~~~ 995 (1106)
.. .+ ++.+|||+|++.++|.+||+||+.|+...+.....+.++..+++.++++.++|.+ +.+..+ .+
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred cCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCCh-----hh
Confidence 31 12 3469999999999999999999999887765556667777888999999999975 456553 46
Q ss_pred CCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCE
Q 001291 996 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGR 1074 (1106)
Q Consensus 996 LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~ 1074 (1106)
|||||||||+|||||+.+|+||||||||+|||+.++..|+++|+++.++ |.|||++|||++ +.++|||+++|++ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHH--HHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999985 4579999999985 79
Q ss_pred EEEEecC
Q 001291 1075 EVYVGPL 1081 (1106)
Q Consensus 1075 ~~~~G~~ 1081 (1106)
+++.|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEeccC
Confidence 9999875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-46 Score=399.86 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=191.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++++||+++|+.. ....++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEeEEEEeCCC---------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc--cCCceEEcCeEee
Confidence 5788888777532 1234689999999999999999999999999999999998764 5899999998863
Q ss_pred h------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCC
Q 001291 924 Q------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLS 997 (1106)
Q Consensus 924 ~------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS 997 (1106)
. ..+++.+|||+|++.+++.+||+||+.|+..++. .+.++.++++.++|+.++|.+..+..+ .+||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred eCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 1244679999999999999999999999876542 455667788999999999999888774 4699
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 998 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 998 ~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
|||||||+|||||+.+|+||||||||+|||+.++..|++.|+++.++ |.|||++|||++ ++..+|||+++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999997 57788999999985 7999
Q ss_pred EEecCCC
Q 001291 1077 YVGPLGH 1083 (1106)
Q Consensus 1077 ~~G~~~~ 1083 (1106)
+.|++.+
T Consensus 221 ~~G~~~e 227 (240)
T d3dhwc1 221 EQDTVSE 227 (240)
T ss_dssp EEEETTT
T ss_pred EECCHHH
Confidence 9999865
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=4.5e-46 Score=392.50 Aligned_cols=211 Identities=20% Similarity=0.270 Sum_probs=185.0
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++||+++|+ + .+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEeC-------------C-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC--CCCEEEEccEecc
Confidence 56788887763 2 389999999999999999999999999999999998764 5999999999875
Q ss_pred hh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 924 QE-TFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 924 ~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. ..++.+|||+|++.+++.+||+||+.|+..++... . ++++.++++.+++.++.++.+ .+|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred ccchhHhcceeeccccccCccccHHHHHHHHHhhcccc---H---HHHHHHHHHHhcchhhHhCCh-----hhCCHHHhc
Confidence 42 23567999999999999999999999998776421 2 245889999999999988874 469999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
||+|||||+.+|+||||||||+|||+.++..+++.|+++.+ .|.|||++|||++ ++.+.|||+++|++ |++++.|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred chhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999999999999999999865 5999999999997 68889999999985 799999986
Q ss_pred CC
Q 001291 1082 GH 1083 (1106)
Q Consensus 1082 ~~ 1083 (1106)
.+
T Consensus 213 ~e 214 (229)
T d3d31a2 213 EE 214 (229)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-45 Score=389.21 Aligned_cols=206 Identities=23% Similarity=0.314 Sum_probs=177.2
Q ss_pred ccceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc-------ceEEEEcCCC
Q 001291 163 KHLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE-------RTAAYISQHD 235 (1106)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q~d 235 (1106)
....+|+||||+|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++.....+ +.+|||+|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred eeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCC---cceeEECCEEcCcCChhhcchhhcceEEEEecch
Confidence 4457999999999999999999999999999999999999998 99999999998776542 3599999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcc-cccc
Q 001291 236 NHIGEMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDI-CADT 314 (1106)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt 314 (1106)
.++|.+||+||+.|+...+..+.. ...+....+.+.|+.+||++ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM-------------------------------SGEERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC-------------------------------CHHHHHHHHHHHHHHTTCCGGGTTC
T ss_pred hhCcCccHHHHHhHHHHHhccCCC-------------------------------CHHHHHHHHHHHHHhhchhhhhhcC
Confidence 999999999999999876543211 11223345677899999976 5787
Q ss_pred cccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCe
Q 001291 315 MVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDD 394 (1106)
Q Consensus 315 ~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 394 (1106)
.+.+ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++.+. .+++++.++|+..++ ++|||
T Consensus 142 ~p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~-~g~tii~vTHd~~~a-~~~dr 214 (230)
T d1l2ta_ 142 KPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVVVVTHDINVA-RFGER 214 (230)
T ss_dssp CGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEECSCHHHH-TTSSE
T ss_pred Chhh-----CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHh-hCCEEEEECCCHHHH-HhCCE
Confidence 7765 9999999999999999999999999999999999999999999998654 456666678888765 89999
Q ss_pred EEEecCCeEEEEcCH
Q 001291 395 IILLSDGQIVYQGPR 409 (1106)
Q Consensus 395 vilL~~G~iv~~G~~ 409 (1106)
|++|++|+|+++|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEeccC
Confidence 999999999999863
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-44 Score=385.87 Aligned_cols=216 Identities=23% Similarity=0.308 Sum_probs=191.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+..+|++++| +++++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 aI~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEeEEEEE-------------CCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCCEEEECcEec
Confidence 46778888766 467899999999999999999999999999999999998764 589999999886
Q ss_pred Ch--hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH
Q 001291 923 KQ--ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQ 1000 (1106)
Q Consensus 923 ~~--~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gq 1000 (1106)
.. ...++.+|||||.+.+++.+|+.||+.|...++. ....+.++.++++++.+++.+..+..++ +|||||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~ 138 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGM 138 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHH
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhh-----hCCHHH
Confidence 43 3345679999999999999999999998877663 3455667788999999999998888754 699999
Q ss_pred HHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEec
Q 001291 1001 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGP 1080 (1106)
Q Consensus 1001 rqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1080 (1106)
|||++|||||+.+|+||||||||+|||+.++..++++|++++++|+|||++||+++ ++...|||+++|++ |++++.|+
T Consensus 139 ~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 139 VRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999989999999999998 68889999999985 79999998
Q ss_pred CCC
Q 001291 1081 LGH 1083 (1106)
Q Consensus 1081 ~~~ 1083 (1106)
+.+
T Consensus 217 ~~e 219 (238)
T d1vpla_ 217 VEE 219 (238)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=8.9e-45 Score=384.15 Aligned_cols=210 Identities=23% Similarity=0.349 Sum_probs=182.5
Q ss_pred ceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc-cceEEEEcCCCCCCCCCCHHHHHH
Q 001291 170 DVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1106)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1106)
|||+++. +++++|+|||||||||||++|+|+++|+ +|+|.+||.++....+ +|.+|||+|++.++|++||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhh
Confidence 7999995 6899999999999999999999999998 9999999999987655 468999999999999999999999
Q ss_pred HHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCChhh
Q 001291 249 FAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVSGGQ 328 (1106)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLSGGq 328 (1106)
|+.+.. . ..+.+.+++++++.+||++.+|..+.+ |||||
T Consensus 93 ~~l~~~------------~------------------------~~~~~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------E------------------------RVERDRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTS------------C------------------------HHHHHHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred hhhccc------------C------------------------HHHHHHHHHHHHHhcCcHhhhhCChhh-----CCHHH
Confidence 975311 0 112234678899999999999988876 99999
Q ss_pred hhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEEEEcC
Q 001291 329 KKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGP 408 (1106)
Q Consensus 329 kqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 408 (1106)
||||+|||||+.+|++|||||||+|||+.++..+++.++++.+.. +++++.++|+..++..+||+|++|++|++++.|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~-g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHH-TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999999987654 4556668999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCChhHHHH
Q 001291 409 RELVLEFFESMGFKCPKRKGVADFLQ 434 (1106)
Q Consensus 409 ~~~~~~~f~~~G~~~p~~~~~ad~l~ 434 (1106)
++++.+ |+...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHhc---------CCCHHHHHHhC
Confidence 999964 23445666654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.8e-44 Score=384.08 Aligned_cols=216 Identities=23% Similarity=0.324 Sum_probs=184.8
Q ss_pred ceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCcc
Q 001291 842 YSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYP 921 (1106)
Q Consensus 842 ~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 921 (1106)
.-+.++|++++| ++..+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEE
T ss_pred eEEEEeeEEEEE-------------CCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEecccc
Confidence 357888988776 356799999999999999999999999999999999998764 58999999998
Q ss_pred CChh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHc-CCCcccccccCCCCCCCC
Q 001291 922 KKQE---TF-ARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELV-ELKPLRQSLVGLPGVNGL 996 (1106)
Q Consensus 922 ~~~~---~~-~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~-~l~~~~~~~~~~~g~~~L 996 (1106)
.... .. +..++|++|+..+++.+||+||+.+.+..+. ..+..++.++++++.+ ++.+..++.+ .+|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLG-----GTL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBS-----SSS
T ss_pred cccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhhChHHHHhCch-----hhC
Confidence 7532 12 2348999999999999999999988765432 2234445567777776 6777777764 369
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEE
Q 001291 997 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREV 1076 (1106)
Q Consensus 997 S~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~ 1076 (1106)
||||||||+|||||+.+|+||||||||+|||+.++..|+++|++++++|+|||++|||++ ++.+.|||+++|++ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 999999999999999999999999999999999999999999999989999999999997 68899999999985 7999
Q ss_pred EEecCCC
Q 001291 1077 YVGPLGH 1083 (1106)
Q Consensus 1077 ~~G~~~~ 1083 (1106)
+.|++.+
T Consensus 219 ~~g~~~e 225 (240)
T d1ji0a_ 219 LEGKASE 225 (240)
T ss_dssp EEEEHHH
T ss_pred EEcCHHH
Confidence 9998765
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7e-44 Score=385.27 Aligned_cols=216 Identities=21% Similarity=0.253 Sum_probs=186.4
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+.++||+.+| ++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC--CCCCEEECCEEec
Confidence 6778887665 356799999999999999999999999999999999998764 5899999998763
Q ss_pred h----------------hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-cc
Q 001291 924 Q----------------ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-QS 986 (1106)
Q Consensus 924 ~----------------~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-~~ 986 (1106)
. ...++.+|||+|++.+++.+||.||+.++..... ..+.++.++.+.++++.+++.+.. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhhcc
Confidence 2 1234579999999999999999999988743322 345667778899999999997743 44
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeE
Q 001291 987 LVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1066 (1106)
Q Consensus 987 ~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v 1066 (1106)
.+ .+|||||||||+|||||+.+|+||||||||+|||+.++..|+++|++++++|.|||+||||++ ++...|||+
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Cc-----ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHH-HHHHhCCEE
Confidence 32 469999999999999999999999999999999999999999999999989999999999998 578899999
Q ss_pred EEEecCCEEEEEecCCC
Q 001291 1067 FLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1067 ~~l~~gG~~~~~G~~~~ 1083 (1106)
++|++ |++++.|++.+
T Consensus 220 ~vm~~-G~iv~~g~~~e 235 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDPEQ 235 (258)
T ss_dssp EEEET-TEEEEEECHHH
T ss_pred EEEEC-CEEEEEcCHHH
Confidence 99985 79999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.5e-44 Score=386.25 Aligned_cols=218 Identities=23% Similarity=0.267 Sum_probs=187.5
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
+..+||+.+| ++.++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 5 L~v~nlsk~y-------------g~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~ 69 (254)
T d1g6ha_ 5 LRTENIVKYF-------------GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDIT 69 (254)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC--CCcEEEECCEecc
Confidence 6778887665 356899999999999999999999999999999999998764 5899999999874
Q ss_pred hh---c-ccceEEEEccCCCCCCCCCHHHHHHHhhhhcC----------CCCCChHHHHHHHHHHHHHcCCCcccccccC
Q 001291 924 QE---T-FARISGYCEQNDIHSPFVTVYESLFYSAWLRL----------PPEVNSETRKMFIEEVMELVELKPLRQSLVG 989 (1106)
Q Consensus 924 ~~---~-~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~----------~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~ 989 (1106)
.. . .++.++|+||++.+++.+||+||+.++...+. ......+...+++.++++.+++.+..++.++
T Consensus 70 ~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (254)
T d1g6ha_ 70 NKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG 149 (254)
T ss_dssp TCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred chhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchh
Confidence 32 1 23359999999999999999999998754321 1122344555678899999999988887754
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 990 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 990 ~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
+|||||||||+|||||+.+|++|||||||+|||+.++..|++.|++++++|+|||++|||++ ++.+.|||+++|
T Consensus 150 -----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm 223 (254)
T d1g6ha_ 150 -----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVM 223 (254)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEE
T ss_pred -----hCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999999989999999999998 588999999999
Q ss_pred ecCCEEEEEecCCC
Q 001291 1070 KRGGREVYVGPLGH 1083 (1106)
Q Consensus 1070 ~~gG~~~~~G~~~~ 1083 (1106)
++ |++++.|++.+
T Consensus 224 ~~-G~iv~~g~~~e 236 (254)
T d1g6ha_ 224 FN-GQIIAEGRGEE 236 (254)
T ss_dssp ET-TEEEEEEESHH
T ss_pred eC-CEEEEEecHHH
Confidence 85 79999998764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.6e-43 Score=373.55 Aligned_cols=208 Identities=25% Similarity=0.306 Sum_probs=184.2
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCC--ccceEEEEcCCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFV--PERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~l 241 (1106)
+++||+||||.|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.+.. .++.++||||++.+++++
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECcEecccChHHHHhhEeEeeeccccCCCc
Confidence 457999999999999999999999999999999999999998 999999999876532 246799999999999999
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.|...+.+.. ..+....++.+++.++|.+..+..+++
T Consensus 91 tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 133 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASS----------------------------------SSEIEEMVERATEIAGLGEKIKDRVST--- 133 (238)
T ss_dssp BHHHHHHHHHHHHCCC----------------------------------HHHHHHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred cHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHhCCCHHHHhhhhhh---
Confidence 9999999987665321 112234577889999999999988876
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
|||||||||+||+||+++|++|||||||+|||+.++.++.+.++++.. . +++|+.++|+.+++..+||||++|++|
T Consensus 134 --lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~-g~tii~~tH~l~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 134 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-E-GLTILVSSHNMLEVEFLCDRIALIHNG 209 (238)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-T-TCEEEEEECCHHHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999764 3 456666899999999999999999999
Q ss_pred eEEEEcCHHHHHHH
Q 001291 402 QIVYQGPRELVLEF 415 (1106)
Q Consensus 402 ~iv~~G~~~~~~~~ 415 (1106)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEEcCHHHHHhc
Confidence 99999999999763
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-43 Score=379.85 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=178.4
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc----------------cceE
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP----------------ERTA 228 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----------------~~~~ 228 (1106)
.++|+||||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCC---CCCEEECCEEeccCCccchhcccccHhHHHHHhcce
Confidence 46999999999999999999999999999999999999998 9999999998753321 2569
Q ss_pred EEEcCCCCCCCCCCHHHHHHHHHH-hcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcC
Q 001291 229 AYISQHDNHIGEMTVRETLAFAAR-CQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLG 307 (1106)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1106)
|||+|++.+++.+||.||+.|+.. ..+. ...+....+.++++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~----------------------------------~~~~~~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL----------------------------------SKHDARERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC----------------------------------CHHHHHHHHHHHHHHTT
T ss_pred EEEEechhhccchhcchhhhhhHHHhcCC----------------------------------CHHHHHHHHHHHHHHcC
Confidence 999999999999999999999743 2221 01122345778899999
Q ss_pred Ccc-cccccccCccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChh
Q 001291 308 LDI-CADTMVGDEMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAP 386 (1106)
Q Consensus 308 L~~-~~dt~vg~~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 386 (1106)
|.+ ..+..+++ |||||||||+|||||+.+|++|||||||+|||+.++.+|++.|+++.+ .+ ++|+.++|+..
T Consensus 138 l~~~~~~~~p~~-----LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMG 210 (258)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHH
T ss_pred CchhhhccCccc-----ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cC-CceEEEeCCHH
Confidence 976 45666665 999999999999999999999999999999999999999999999865 44 56777899999
Q ss_pred HHHhhcCeEEEecCCeEEEEcCHHHHHH
Q 001291 387 ETYNLFDDIILLSDGQIVYQGPRELVLE 414 (1106)
Q Consensus 387 ~~~~~~D~vilL~~G~iv~~G~~~~~~~ 414 (1106)
++..+||||++|++|+|+++|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999864
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-43 Score=377.28 Aligned_cols=205 Identities=23% Similarity=0.347 Sum_probs=177.1
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIG 239 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 239 (1106)
.+++|+||||+|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++...... ..++|++|+..+|+
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEecccccccccHHHHHHhcccccCcccccCC
Confidence 356999999999999999999999999999999999999998 99999999998765432 34999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHc-CCcccccccccC
Q 001291 240 EMTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVL-GLDICADTMVGD 318 (1106)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~ 318 (1106)
.+||+||+.+++...... +.....++.+++.+ +|.+.+|..+++
T Consensus 95 ~ltv~en~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDK-----------------------------------EGIKRDLEWIFSLFPRLKERLKQLGGT 139 (240)
T ss_dssp TSBHHHHHHGGGTTCCCS-----------------------------------SHHHHHHHHHHHHCHHHHTTTTSBSSS
T ss_pred cccHHHHHHHHHHhcCCH-----------------------------------HHHHHHHHHHHHHhhChHHHHhCchhh
Confidence 999999998876432110 01112344556666 688888888876
Q ss_pred ccCCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEe
Q 001291 319 EMRRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILL 398 (1106)
Q Consensus 319 ~~~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 398 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.++++.+ . +++|+.++|+..++.++||||++|
T Consensus 140 -----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~til~~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 140 -----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVL 212 (240)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999864 3 566667899999999999999999
Q ss_pred cCCeEEEEcCHHHHH
Q 001291 399 SDGQIVYQGPRELVL 413 (1106)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1106)
++|+++++|+++++.
T Consensus 213 ~~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 213 ETGQIVLEGKASELL 227 (240)
T ss_dssp ETTEEEEEEEHHHHH
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999985
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2e-43 Score=373.82 Aligned_cols=194 Identities=25% Similarity=0.381 Sum_probs=173.0
Q ss_pred eeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHH
Q 001291 874 GVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLFY 952 (1106)
Q Consensus 874 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~g~v~q~~~~~~~~tv~e~l~~ 952 (1106)
||||++. +|++||+||||||||||+++|+|..++ .+|+|.++|.++... ..+|.+|||+|++.++|.+||+||+.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC--CceEEEECCEECCcCCHHHcCceeeccchhhcccchhhHhhhh
Confidence 8999995 689999999999999999999998774 599999999987542 335679999999999999999999998
Q ss_pred hhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHH
Q 001291 953 SAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1032 (1106)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~ 1032 (1106)
+. + .....+.+++++++++.++|.++.+..+ .+|||||||||+|||||+.+|+||||||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred hh--c---ccCHHHHHHHHHHHHHhcCcHhhhhCCh-----hhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHH
Confidence 74 2 2345667788999999999999888874 469999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCC
Q 001291 1033 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLG 1082 (1106)
Q Consensus 1033 ~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1082 (1106)
.+++.|+++.++ |.|||++|||++ ++.+.|||+++|++ |++++.|++.
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~~ 212 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEecHH
Confidence 999999999755 999999999997 68889999999985 7999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.6e-43 Score=379.54 Aligned_cols=219 Identities=26% Similarity=0.340 Sum_probs=184.6
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc----ceEEEEcCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE----RTAAYISQHDNHIGE 240 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 240 (1106)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++....+. +.++|++|++.+++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCC---CcEEEECCEeccchhHHHHHHhcCCccCCccccCCC
Confidence 56999999999999999999999999999999999999998 99999999998766553 349999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
+||+||+.++....+..... ..-. +......++....++.+++.+++.+.+|+.+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN-------SLFY--------------KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE-- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH-------HHHH--------------CSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred Ceeeeeeeehhhhccccchh-------hhhh--------------hcccccHHHHHHHHHHHHHhcCcchhccCchhh--
Confidence 99999999986544321100 0000 000011122335677889999999999999887
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||||+|||||+.+|++|||||||+|||+.++.+|++.++++.. .+++|+.++|+.+++.++||||++|++
T Consensus 151 ---LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 151 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred ---CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCcHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999754 357777789999999999999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+++++|+++++.+
T Consensus 226 G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 226 GQIIAEGRGEEEIK 239 (254)
T ss_dssp TEEEEEEESHHHHH
T ss_pred CEEEEEecHHHHhh
Confidence 99999999988654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-42 Score=371.82 Aligned_cols=212 Identities=26% Similarity=0.404 Sum_probs=173.6
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++|+||+|+|+. +...+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred eEEEEEEEEeCC-----------CCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC--CCCEEEECCEEec
Confidence 689999999852 345799999999999999999999999999999999998764 5899999999875
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCCCC
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPGV 993 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-------~~~~~~~~g~ 993 (1106)
. ..+++.+|||+|++.++ ..||+||+.|+. ..... +.++++++..++.+. .+..++.. +
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSV----EKVIYAAKLAGAHDFISELREGYNTIVGEQ-G 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCH----HHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T
T ss_pred ccchhhhhceEEEEecccccC-CccccccccccC-----ccccH----HHHHHHHHHHhhHHHHHhhhcchhhhcCCC-C
Confidence 4 44677899999999776 479999997752 12222 223445555444322 23334433 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
..|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+++. +|+|||+|||+++. .+.||+|++|+ +|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~--~~~~D~i~vl~-~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST--VKNADRIIVME-KG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG--GTTSSEEEEEE-TT
T ss_pred CccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh-CCCEEEEEECCHHH--HHhCCEEEEEE-CC
Confidence 5799999999999999999999999999999999999999999999986 48999999999973 47899999998 58
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|+..+
T Consensus 214 ~Iv~~G~~~e 223 (241)
T d2pmka1 214 KIVEQGKHKE 223 (241)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.4e-43 Score=372.64 Aligned_cols=209 Identities=23% Similarity=0.342 Sum_probs=167.5
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1106)
...+|+|||++|++|+.++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|++.+| .
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCC---CCEEEECCEEecccchhhhhceEEEEecccccC-C
Confidence 356999999999999999999999999999999999999998 9999999999987654 46899999998665 5
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
.||+|||.|+..... .+...+.+ +. ....-....++...+|.+|. .
T Consensus 91 ~Ti~eNi~~~~~~~~----~~~~~~~~---~~--------------------------~~~~~~i~~~~~~~~t~i~~-~ 136 (241)
T d2pmka1 91 RSIIDNISLANPGMS----VEKVIYAA---KL--------------------------AGAHDFISELREGYNTIVGE-Q 136 (241)
T ss_dssp SBHHHHHCTTSTTCC----HHHHHHHH---HH--------------------------HTCHHHHTTSTTGGGSBCST-T
T ss_pred ccccccccccCcccc----HHHHHHHH---HH--------------------------HhhHHHHHhhhcchhhhcCC-C
Confidence 799999988632110 00000000 00 00001122456677899886 3
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
+..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++. .++ ++++++|.... ...||+|++|++
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~-Tvi~itH~l~~-~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGR-TVIIIAHRLST-VKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTS-EEEEECSSGGG-GTTSSEEEEEET
T ss_pred CCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHh--CCC-EEEEEECCHHH-HHhCCEEEEEEC
Confidence 56699999999999999999999999999999999999999999999874 244 55567787765 478999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+|+++|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999974
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-42 Score=375.05 Aligned_cols=212 Identities=22% Similarity=0.370 Sum_probs=170.0
Q ss_pred cceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCC
Q 001291 164 HLTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGE 240 (1106)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1106)
.+.+|+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++..... ++.++||+|++.+| .
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-G 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-S
T ss_pred CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCC---cCEEEECCEecchhhhHHHHHHhhhcccccccc-C
Confidence 457999999999999999999999999999999999999998 9999999999876554 46899999998776 5
Q ss_pred CCHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCcc
Q 001291 241 MTVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEM 320 (1106)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 320 (1106)
.||+||+.|+...... .. +.....+ .....-...+|++..+|.+++ .
T Consensus 102 ~tv~eni~~g~~~~~~---~~---~~~~~~~--------------------------~~~~~~~i~~l~~g~~~~i~~-~ 148 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKPT---ME---EITAAAV--------------------------KSGAHSFISGLPQGYDTEVDE-A 148 (251)
T ss_dssp SBHHHHHHCSCSSCCC---HH---HHHHHHH--------------------------HHTCHHHHHTSTTGGGCBCCS-S
T ss_pred cchhhhhhhhhcccch---HH---HHHHHHH--------------------------HHHHHHHHHhccccchhhHhc-c
Confidence 6999999986432110 00 0000000 000011223667777888875 4
Q ss_pred CCCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 321 RRGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 321 ~rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
...|||||||||+|||||+.+|+||+||||||+||+.+..+|++.|+++.+.. ++++++++|+... .+.||+|++|++
T Consensus 149 ~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~-~~Tvi~itH~l~~-~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 149 GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERY-SRSVLLITQHLSL-VEQADHILFLEG 226 (251)
T ss_dssp CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGG-GCEEEEECSCHHH-HHTCSEEEEEET
T ss_pred CccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhc-CCEEEEEeCCHHH-HHhCCEEEEEEC
Confidence 56799999999999999999999999999999999999999999999876544 4455567788764 577999999999
Q ss_pred CeEEEEcCHHHHHH
Q 001291 401 GQIVYQGPRELVLE 414 (1106)
Q Consensus 401 G~iv~~G~~~~~~~ 414 (1106)
|+|+++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.5e-43 Score=376.99 Aligned_cols=212 Identities=26% Similarity=0.405 Sum_probs=172.8
Q ss_pred eeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCC
Q 001291 844 LTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKK 923 (1106)
Q Consensus 844 l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 923 (1106)
++++||+|+|+. .+++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC--CCCEEEECCEEec
Confidence 678999998852 23589999999999999999999999999999999998764 4899999999875
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcc-------cccccCCCCC
Q 001291 924 Q---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPL-------RQSLVGLPGV 993 (1106)
Q Consensus 924 ~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~-------~~~~~~~~g~ 993 (1106)
. ..+++.+|||+|++.+++. |++||+.++.. .... +..++++++..++.+. .+..++..|
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred cccHHHHHhheEEEccccccCCc-chhhheecccc----cccc----hhhHHHHHHHHHhhhhhccCcccccccccCCC-
Confidence 4 3456789999999988764 99999976532 1112 2234555555555432 233344333
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 994 NGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++. +|+|||+|||+++ ....||+|++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc-CCCEEEEEECCHH--HHHhCCEEEEEEC-C
Confidence 4699999999999999999999999999999999999999999999986 5899999999986 3467999999984 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|+..+
T Consensus 214 ~iv~~G~~~e 223 (242)
T d1mv5a_ 214 QITGSGKHNE 223 (242)
T ss_dssp EECCCSCHHH
T ss_pred EEEEECCHHH
Confidence 9999998754
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=3e-42 Score=371.42 Aligned_cols=215 Identities=24% Similarity=0.360 Sum_probs=178.1
Q ss_pred CceeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCc
Q 001291 841 PYSLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGY 920 (1106)
Q Consensus 841 ~~~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~ 920 (1106)
...+.|+||+|+|+. ...++|+||||+|++||++||+||||||||||+++|+|...+ .+|.|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTE
T ss_pred CCEEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc--cccccccCCE
Confidence 346999999998853 234699999999999999999999999999999999998764 5899999999
Q ss_pred cCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCC
Q 001291 921 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGL 990 (1106)
Q Consensus 921 ~~~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~ 990 (1106)
++.. ..+++.++||+|++.+++ .||+||+.|+. .... ++.+.++++.+++.+.. +..++.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~-----~~~~----~~~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR-----PTAT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC-----SSCC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccC-----cCCC----HHHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 8754 346778999999987764 69999998762 1122 23456778887775433 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEe
Q 001291 991 PGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1070 (1106)
Q Consensus 991 ~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~ 1070 (1106)
. +.+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|||+|||+++. ...||+|++|+
T Consensus 151 ~-g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~~--~~~~D~ii~l~ 226 (255)
T d2hyda1 151 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 226 (255)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHHH--HHhCCEEEEEE
Confidence 2 24699999999999999999999999999999999999999999999886 48999999999973 47899999998
Q ss_pred cCCEEEEEecCCC
Q 001291 1071 RGGREVYVGPLGH 1083 (1106)
Q Consensus 1071 ~gG~~~~~G~~~~ 1083 (1106)
+|++++.|+..+
T Consensus 227 -~G~iv~~G~~~e 238 (255)
T d2hyda1 227 -NGHIVETGTHRE 238 (255)
T ss_dssp -TTEEEEEECHHH
T ss_pred -CCEEEEECCHHH
Confidence 589999998754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=4.6e-42 Score=370.72 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=175.6
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|.|+. ...++|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEeCC-----------CCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC--CccEEEECCccc
Confidence 5899999998863 234699999999999999999999999999999999998764 589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLR-------QSLVGLPG 992 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~-------~~~~~~~g 992 (1106)
.. ..+++.++||+|++.++. .|+++|+.++.. .... ++.++++++..++.+.. +..++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~----~~~~----~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYART----EEYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTT----SCCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred chhhhhhhhheEEEEeeccccCC-cchhhhhhhcCc----ccCC----HHHHHHHHHHHhHHHHHHhccccchhhhcCC-
Confidence 54 345677999999997764 699999987631 1222 23355666666655432 2333332
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecC
Q 001291 993 VNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRG 1072 (1106)
Q Consensus 993 ~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~g 1072 (1106)
+.+|||||||||+|||||+++|+||+||||||+||+.++..|++.|+++. +|+|||+||||++. .+.||+|++|++
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~~--~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGG--TTTCSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc-cCCEEEEEECCHHH--HHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999986 48999999999973 478999999985
Q ss_pred CEEEEEecCCC
Q 001291 1073 GREVYVGPLGH 1083 (1106)
Q Consensus 1073 G~~~~~G~~~~ 1083 (1106)
|++++.|++.+
T Consensus 226 G~Iv~~G~~~e 236 (253)
T d3b60a1 226 GIIVERGTHSE 236 (253)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEECCHHH
Confidence 79999998754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-42 Score=374.22 Aligned_cols=218 Identities=22% Similarity=0.308 Sum_probs=172.9
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.+.|+||+|+|+.. .+..+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEECCCC----------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC--CcCEEEECCEec
Confidence 59999999998631 234689999999999999999999999999999999998774 589999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHH-----HHHHHHHHcCCCcccccccCCCCCC
Q 001291 923 KQ---ETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKM-----FIEEVMELVELKPLRQSLVGLPGVN 994 (1106)
Q Consensus 923 ~~---~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~~~l~~~~~~~~~~~g~~ 994 (1106)
.. ..+++.++||+|++.+++ .|++||+.|+... ......... ...+.++ .+..-.+..++.. +.
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred chhhhHHHHHHhhhccccccccC-cchhhhhhhhhcc----cchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 54 345678999999998775 6999999886321 111111111 1112222 2222233334332 35
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEecCC
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKRGG 1073 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~gG 1073 (1106)
+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.++ |+|||+||||++ ..+.||+|++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-T
T ss_pred cCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998654 899999999986 4578999999984 7
Q ss_pred EEEEEecCCC
Q 001291 1074 REVYVGPLGH 1083 (1106)
Q Consensus 1074 ~~~~~G~~~~ 1083 (1106)
++++.|++.+
T Consensus 228 ~iv~~Gt~~e 237 (251)
T d1jj7a_ 228 AIREGGTHQQ 237 (251)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998754
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=8.4e-43 Score=374.04 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=166.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
+++|+|||++|+||++++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.+|+.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCC---CCEEEECCEEeccccHHHHHhheEEEccccccCCc-
Confidence 46999999999999999999999999999999999999998 9999999999876543 5689999999877764
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+||+.++...... . + ++....+.... .-....+++..+|.+|+ .+
T Consensus 91 ti~eNi~~~~~~~~~--~-~---~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~i~~-~g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT--D-E---DLWQVLDLAFA--------------------------RSFVENMPDQLNTEVGE-RG 137 (242)
T ss_dssp EHHHHTTSCTTSCSC--H-H---HHHHHHHHHTC--------------------------TTTTTSSTTGGGCEEST-TS
T ss_pred chhhheecccccccc--h-h---hHHHHHHHHHh--------------------------hhhhccCcccccccccC-CC
Confidence 999999876432110 0 0 00000000000 00112456677899986 34
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..|||||||||+|||||+.+|+||+||||||+||+.++..|++.|+++. .++ ++++++|+...+ ..||+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~~-Tvi~itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGR-TTLVIAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTS-EEEEECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHc--CCC-EEEEEECCHHHH-HhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999874 344 455577877655 569999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+|+++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.6e-41 Score=364.04 Aligned_cols=208 Identities=24% Similarity=0.372 Sum_probs=166.9
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||++|++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..... ++.++||+|++.+| ..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SS
T ss_pred CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcc---ccccccCCEEcccCCHHHhhheeeeeeccccCC-CC
Confidence 46999999999999999999999999999999999999998 9999999999876543 47899999988665 57
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
||+|||.|+.... . .+...++ .+..+ ... ....|+...||.+|+ .+
T Consensus 107 Ti~eNi~~g~~~~---~-~~~~~~a---l~~~~------------------------l~~--~i~~lp~gl~t~i~~-~g 152 (255)
T d2hyda1 107 TVKENILLGRPTA---T-DEEVVEA---AKMAN------------------------AHD--FIMNLPQGYDTEVGE-RG 152 (255)
T ss_dssp BHHHHHGGGCSSC---C-HHHHHHH---HHHTT------------------------CHH--HHHTSTTGGGCBCCG-GG
T ss_pred CHHHHHhccCcCC---C-HHHHHHH---HHHhC------------------------CHH--HHHhccccccchhcC-CC
Confidence 9999999863211 0 0000000 00000 000 122567778999986 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++. .++| +|+++|.... ...||+|++|++|
T Consensus 153 ~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~--~~~T-vI~itH~~~~-~~~~D~ii~l~~G 228 (255)
T d2hyda1 153 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRT-TLIVAHRLST-ITHADKIVVIENG 228 (255)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSE-EEEECSSGGG-TTTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--cCCE-EEEEeCCHHH-HHhCCEEEEEECC
Confidence 6699999999999999999999999999999999999999999998864 3455 4556777664 5789999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+|++.|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-41 Score=364.01 Aligned_cols=209 Identities=22% Similarity=0.374 Sum_probs=166.0
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCc---cceEEEEcCCCCCCCCC
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVP---ERTAAYISQHDNHIGEM 241 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1106)
.++|+|||+.|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++.+... ++.++||+|++.++ ..
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLF-ND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCC-SS
T ss_pred CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCC---ccEEEECCcccchhhhhhhhheEEEEeeccccC-Cc
Confidence 46999999999999999999999999999999999999998 9999999999887654 36799999988655 57
Q ss_pred CHHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccC
Q 001291 242 TVRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMR 321 (1106)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 321 (1106)
|+++|+.|+.... . ..+...++ .+..+ ....++ .|+...||.+|+ .+
T Consensus 104 ti~~n~~~~~~~~-~--~~~~i~~a---~~~~~------------------------l~~~i~--~l~~gl~t~~~~-~~ 150 (253)
T d3b60a1 104 TVANNIAYARTEE-Y--SREQIEEA---ARMAY------------------------AMDFIN--KMDNGLDTIIGE-NG 150 (253)
T ss_dssp BHHHHHHTTTTSC-C--CHHHHHHH---HHTTT------------------------CHHHHH--HSTTGGGSBCCT-TS
T ss_pred chhhhhhhcCccc-C--CHHHHHHH---HHHHh------------------------HHHHHH--hccccchhhhcC-CC
Confidence 9999999863211 0 00000000 00000 011122 245566888885 45
Q ss_pred CCCChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCC
Q 001291 322 RGVSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDG 401 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 401 (1106)
..|||||||||+|||||+.+|+||+||||||+||+.+...|++.|+++. .+ ++++.++|+...+ ..||+|++|++|
T Consensus 151 ~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~--~~-~Tvi~itH~l~~~-~~~D~v~vl~~G 226 (253)
T d3b60a1 151 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KN-RTSLVIAHRLSTI-EQADEIVVVEDG 226 (253)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH--TT-SEEEEECSCGGGT-TTCSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhc--cC-CEEEEEECCHHHH-HhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 24 4555677887654 789999999999
Q ss_pred eEEEEcCHHHHHH
Q 001291 402 QIVYQGPRELVLE 414 (1106)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1106)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999975
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-39 Score=347.40 Aligned_cols=204 Identities=23% Similarity=0.360 Sum_probs=172.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChh---cccceEEEEccCCCCCCCCCHH
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQE---TFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
+|+||||+|++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... ..+...+|++|+.......+++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHH
Confidence 5899999999999999999999999999999999753 379999999986442 2344579999987766678899
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc-------CCCeEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVA-------NPSIIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~-------~p~illLD 1020 (1106)
+++.++.. .+...+.++++++.+++.+..++.+ .+||||||||++|||||++ +|+|||||
T Consensus 91 ~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH--------DKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS--------CTTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHhhhccc--------hhhHHHHHHHHHHhcCCHhHhCcCh-----hhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEc
Confidence 98876531 1223456789999999998887764 4699999999999999997 77999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC--chhHHHHHH
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH--HSCHLISYF 1092 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~--~~~~~~~yf 1092 (1106)
|||+|||+.++..++++|++++++|.|||++|||++ ++.+.|||+++|+ +|++++.|+..+ ...++.+.|
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ev~~~~~l~~~y 229 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRREEVLTPPNLAQAY 229 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHHHHSCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEE-CCEEEEECCHHHHhCChHHHHhh
Confidence 999999999999999999999999999999999998 5889999999998 579999998764 234555555
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.6e-39 Score=351.22 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=156.7
Q ss_pred ceeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHH
Q 001291 165 LTILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVR 244 (1106)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1106)
.+||+|||++|++||+++|+||||||||||+++|+|+++|+ +|+|.++| .++||+|++.+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCC---CcEEEECC----------EEEEEeccccccC-ceee
Confidence 47999999999999999999999999999999999999998 99999998 4899999987665 5999
Q ss_pred HHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCC
Q 001291 245 ETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGV 324 (1106)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgL 324 (1106)
||+.|+..... .++. ++. + ..+.......+....++.+|+ .+..|
T Consensus 115 eni~~~~~~~~--~~~~---~~~---~--------------------------~~~~~~~i~~l~~~~~~~~~~-~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYK---SVV---K--------------------------ACQLQQDITKFAEQDNTVLGE-GGVTL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHH---HHH---H--------------------------HTTCHHHHTTSTTGGGCEECT-TCTTS
T ss_pred ccccccccccc--hHHH---HHH---H--------------------------HHHhHHHHHhchhhhhhhhhh-hccCC
Confidence 99988642210 0000 000 0 001112334666677888875 34569
Q ss_pred ChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001291 325 SGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQIV 404 (1106)
Q Consensus 325 SGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 404 (1106)
||||||||+|||||+.+|+||+|||||++||+.+..++++.+.... ..++| +|.++|+.. ....||+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~-~~~~t-vi~itH~~~-~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKL-MANKT-RILVTSKME-HLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCC-TTTSE-EEEECSCHH-HHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHh-hCCCE-EEEEechHH-HHHhCCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999987543322 23444 555677764 56889999999999999
Q ss_pred EEcCHHHHHH
Q 001291 405 YQGPRELVLE 414 (1106)
Q Consensus 405 ~~G~~~~~~~ 414 (1106)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHhc
Confidence 9999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.4e-38 Score=348.49 Aligned_cols=189 Identities=20% Similarity=0.330 Sum_probs=151.9
Q ss_pred ceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001291 868 KLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVY 947 (1106)
Q Consensus 868 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~ 947 (1106)
++++|+||||+|++||++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|++.+++ .||+
T Consensus 48 g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHH
T ss_pred CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC--CCcEEEECCE----------EEEEeccccccC-ceee
Confidence 35799999999999999999999999999999999998764 5899999882 799999998776 5999
Q ss_pred HHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCC-------CcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEe
Q 001291 948 ESLFYSAWLRLPPEVNSETRKMFIEEVMELVEL-------KPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1020 (1106)
Q Consensus 948 e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l-------~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLD 1020 (1106)
||+.|+.. .... ..+++++.+++ .+..+..++.. ..+|||||||||+|||||+++|+|||||
T Consensus 115 eni~~~~~------~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~~~~-~~~LSgGqkQRv~lARaL~~~p~illLD 183 (281)
T d1r0wa_ 115 ENIIFGVS------YDEY----RYKSVVKACQLQQDITKFAEQDNTVLGEG-GVTLSGGQRARISLARAVYKDADLYLLD 183 (281)
T ss_dssp HHHTTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGCEECTT-CTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred cccccccc------ccch----HHHHHHHHHHhHHHHHhchhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHhCccchhhc
Confidence 99987631 1111 22344444433 22333334332 3469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecCCC
Q 001291 1021 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPLGH 1083 (1106)
Q Consensus 1021 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1083 (1106)
||||+||+.++..+++.+......|+|+|++||+++ ..+.||||++|++ |++++.|++.+
T Consensus 184 EPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~--~l~~aDrI~vl~~-G~i~~~Gt~~e 243 (281)
T d1r0wa_ 184 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKME--HLRKADKILILHQ-GSSYFYGTFSE 243 (281)
T ss_dssp SCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHH--HHHTCSEEEEEET-TEEEEEECHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHH--HHHhCCEEEEEEC-CEEEEECCHHH
Confidence 999999999999998764444456899999999985 4578999999985 79999998764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-37 Score=331.81 Aligned_cols=198 Identities=24% Similarity=0.342 Sum_probs=170.0
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCcc---ceEEEEcCCCCCCCCCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPE---RTAAYISQHDNHIGEMT 242 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 242 (1106)
++|+||||.|++||+++|+||||||||||+++|+|+. |+ +|+|.++|+++...... ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred ceecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CC---ceEEEECCEECCcCCHHHHHhhceeeeccccCCcccc
Confidence 4799999999999999999999999999999999975 55 89999999988665442 35899999877667789
Q ss_pred HHHHHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCC
Q 001291 243 VRETLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRR 322 (1106)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~r 322 (1106)
+.+++.++..-+ ...+.++.+++.++|++..++.+++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~---- 125 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTNQ---- 125 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGGG----
T ss_pred HHHHhhhccchh---------------------------------------hHHHHHHHHHHhcCCHhHhCcChhh----
Confidence 999988753210 0123466788899999988888765
Q ss_pred CCChhhhhHHHHHHHHhc-------CCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeE
Q 001291 323 GVSGGQKKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDI 395 (1106)
Q Consensus 323 gLSGGqkqRvsia~al~~-------~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 395 (1106)
|||||||||+||++|+. +|++|+|||||+|||+.++..+.+.++++.. . +++|+.++|+.+++.++||||
T Consensus 126 -LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 126 -LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp -CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred -cCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHCCEE
Confidence 99999999999999986 6799999999999999999999999999854 3 566777899999999999999
Q ss_pred EEecCCeEEEEcCHHHHH
Q 001291 396 ILLSDGQIVYQGPRELVL 413 (1106)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1106)
++|++|+++++|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999999884
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=4.2e-37 Score=321.15 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=160.4
Q ss_pred eeeecceeeeeeccchhhhcccCCCceEEeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccC
Q 001291 843 SLTFDEVVYSVDMPQQMKLQGVPEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPK 922 (1106)
Q Consensus 843 ~l~f~~v~y~v~~p~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 922 (1106)
.++++|+++.|+ +++|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred eEEEEEEEEEeC--------------CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc--CCCEEEECCEeh
Confidence 367889888763 2589999999999999999999999999999999998764 589999999987
Q ss_pred ChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCChHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001291 923 KQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVNSETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRK 1002 (1106)
Q Consensus 923 ~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrq 1002 (1106)
.. .+..++|++|+..+...+|+.|++.+.+.++.. ... +..+.++++.+++.++.+. + .+|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~-~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVN----KNEIMDALESVEVLDLKKK-L-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCC----HHHHHHHHHHTTCCCTTSB-G-----GGSCHHHHH
T ss_pred hH--hcCcEEEEeecccCCCCcCHHHHHHHHHHhcCC-ccC----HHHHHHHHHHcCCcccccc-c-----CcCCCcHHH
Confidence 54 355789999999988899999999887766532 222 2335678888888765443 2 369999999
Q ss_pred HHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CceEEEEecCccHHHHHhcCeEEEEec
Q 001291 1003 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELFLMKR 1071 (1106)
Q Consensus 1003 rl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~tH~~~~~~~~~~D~v~~l~~ 1071 (1106)
|++|||||+.+|+++||||||+|||+.++..+++.|+++.++ |.+||+++|++ .+||++.+|++
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 999999999999999999999999999999999999998755 44555555543 46999988865
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.3e-36 Score=310.88 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=153.1
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHH
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRE 245 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1106)
+||+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.+||+++.+. +..++|++|+..++..+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccC---CCEEEECCEehhHh--cCcEEEEeecccCCCCcCHHH
Confidence 6999999999999999999999999999999999999998 99999999988653 467999999998889999999
Q ss_pred HHHHHHHhcCCCcchhhhhHhhHHHHhcCCCCCCChHHHHHhhcchhhhHhHHHHHHHHHcCCcccccccccCccCCCCC
Q 001291 246 TLAFAARCQGVGTRYEMLTELSRREKAAGIKPDPDIDVFMKAASTEGEEANVITDYYLKVLGLDICADTMVGDEMRRGVS 325 (1106)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~ek~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~rgLS 325 (1106)
++.+.....+.... +..+...++.+++.+. +..+++ ||
T Consensus 90 ~l~~~~~~~~~~~~------------------------------------~~~~~~~l~~~~~~~~-~~~~~~-----LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN------------------------------------KNEIMDALESVEVLDL-KKKLGE-----LS 127 (200)
T ss_dssp HHHHHHHHTTCCCC------------------------------------HHHHHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHhcCCccC------------------------------------HHHHHHHHHHcCCccc-ccccCc-----CC
Confidence 99998766542110 0123445677776553 344554 99
Q ss_pred hhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecC
Q 001291 326 GGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSD 400 (1106)
Q Consensus 326 GGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 400 (1106)
|||||||+||++|+.+|++++|||||+|||+.++..+++.++++.+. ++++|++.||+. ++||.+.+|++
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhC-CCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999999999999999988764 467777666653 57999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.36 E-value=8.4e-14 Score=140.79 Aligned_cols=161 Identities=16% Similarity=0.074 Sum_probs=95.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCCCCceeEEEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRKTGGYITGDIRISGYPKKQETFARISGYCEQNDIHSPFVTVYESLFYSAWLRLPPEVN 963 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 963 (1106)
.++|+||||||||||+++|+|.... ..|.+.+.+.+...... ..++........... .............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 71 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKK--RTGFRIITTEGKKKI------FSSKFFTSKKLVG 71 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEE------EEETTCCCSSEET
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC--CcceEEECCcchHHHHH--hhhhhhhhhhHHHHH------Hhhhhhhhhhhhh
Confidence 4899999999999999999996543 36788877655322211 112211100000000 0000000000000
Q ss_pred hHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001291 964 SETRKMFIEEVMELVELKPLRQSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1043 (1106)
Q Consensus 964 ~~~~~~~v~~~l~~~~l~~~~~~~~~~~g~~~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~ 1043 (1106)
..+.. .+ ...+|+|++++.++++++..+|++|++|||+...+ .....+..+.++.+
T Consensus 72 -------------~~~~~--~~-------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 72 -------------SYGVN--VQ-------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TEEEC--HH-------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred -------------hhhcC--cc-------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhc
Confidence 00000 00 01379999999999999999999999999854433 23444555555443
Q ss_pred -CCceEEEEecCccHHHHHhcCeEEEEecCCEEEEEecC
Q 001291 1044 -TGRTVVCTIHQPSIDIFEAFDELFLMKRGGREVYVGPL 1081 (1106)
Q Consensus 1044 -~g~tvi~~tH~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1081 (1106)
.+.|||+++|+.+ ....+|++..+. +|+++..++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred cCCCEEEEEEccHH--HHHhhceEEEEe-CCEEEEECCc
Confidence 4899999999975 356788888886 5788877654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.32 E-value=1.8e-14 Score=145.85 Aligned_cols=80 Identities=13% Similarity=0.059 Sum_probs=59.5
Q ss_pred CChhhhhHHHHHHHHhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEEecCCeE
Q 001291 324 VSGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIILLSDGQI 403 (1106)
Q Consensus 324 LSGGqkqRvsia~al~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 403 (1106)
+|+|+++|.++++++..+|+++++|||... ......+.+.+.+..... +++++.++|.. +...++|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~-~~~il~~~h~~-~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDP-NVNVVATIPIR-DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCT-TSEEEEECCSS-CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCcc--chhhHHHHHHHHHHhccC-CCEEEEEEccH-HHHHhhceEEEEeCCEE
Confidence 799999999999999999999999998543 333445556666654433 44455555543 56778999999999999
Q ss_pred EEEc
Q 001291 404 VYQG 407 (1106)
Q Consensus 404 v~~G 407 (1106)
+.-+
T Consensus 158 ~~v~ 161 (178)
T d1ye8a1 158 IELT 161 (178)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.86 E-value=2.8e-08 Score=108.54 Aligned_cols=73 Identities=21% Similarity=0.240 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 994 NGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 994 ~~LS~Gqrqrl~iA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
..+|.|||+.+.++..+ ..+|+++++|||-++|||.....+.+.|++..+ +.-||+|||.|. +.+.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH--HHHhcccEEEE
Confidence 46899999998887764 346789999999999999999999999998864 578999999996 46889998653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.57 E-value=1.2e-07 Score=103.42 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=59.0
Q ss_pred CCCChhhhhHHHHHHH----HhcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 322 RGVSGGQKKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 322 rgLSGGqkqRvsia~a----l~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
..+|+|||+...++.. ...+++++++|||-++|++.....+.+.|+.... .+-+++++ |++++.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~---~~QviitT-Hsp~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK---HTQFIVIT-HNKIVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT---TSEEEEEC-CCTTGGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc---CCEEEEEE-CCHHHHHhcccEEE
Confidence 3489999999877654 4567789999999999999999999999998643 33444333 45688899999966
Q ss_pred --ecCC
Q 001291 398 --LSDG 401 (1106)
Q Consensus 398 --L~~G 401 (1106)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4566
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.47 E-value=1.2e-07 Score=108.10 Aligned_cols=73 Identities=16% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHH----hcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHHHHhcCeEEEE
Q 001291 995 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLM 1069 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL----~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~~~~~D~v~~l 1069 (1106)
.||||||.+++||..+ +.++++++||||+++||+.....+.+.|+++...+.-+|+|||+|. +++.+|+++.+
T Consensus 332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~--~~~~ad~~~~V 408 (427)
T d1w1wa_ 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNT--MFEKSDALVGV 408 (427)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHH--HHTTCSEEEEE
T ss_pred hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHhcccEEEE
Confidence 4899999998877554 3567799999999999999999999999988655667999999984 78899997755
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=7.9e-06 Score=92.43 Aligned_cols=74 Identities=18% Similarity=0.293 Sum_probs=58.5
Q ss_pred CCCChhhhhHHHHHHHH----hcCCccceeecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHHHhhcCeEEE
Q 001291 322 RGVSGGQKKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPETYNLFDDIIL 397 (1106)
Q Consensus 322 rgLSGGqkqRvsia~al----~~~p~vllLDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 397 (1106)
..+|||||.++++|-.+ +.++++++||||+++||+.....+.+.|++++ ...+-+|+++|. +++.+.+|+++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~--~~~~Q~I~iTH~-~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHR--NPDLQFIVISLK-NTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHC--BTTBEEEEECSC-HHHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEeCC-HHHHHhcccEEE
Confidence 44899999998887433 57788999999999999999999999998764 234545556664 568899999875
Q ss_pred e
Q 001291 398 L 398 (1106)
Q Consensus 398 L 398 (1106)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.59 E-value=0.00016 Score=74.18 Aligned_cols=47 Identities=11% Similarity=0.141 Sum_probs=35.9
Q ss_pred HhcCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCceEEEEecCcc
Q 001291 1010 LVANPSIIFMDEPTSGLDARAAAIVM-RTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1010 L~~~p~illLDEPTsgLD~~~~~~i~-~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
-+.+.+++|+||+..|=|+.....+. .+++.+.+.+..++++||..+
T Consensus 111 ~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~e 158 (224)
T d1ewqa2 111 EATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFE 158 (224)
T ss_dssp HCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHH
T ss_pred cCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechh
Confidence 34566799999999999997665554 445556666889999999864
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.45 E-value=0.00019 Score=73.48 Aligned_cols=49 Identities=12% Similarity=0.098 Sum_probs=32.2
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHH-HHHHHHHhcCCeEEEEEecChhHHHh
Q 001291 339 VGPALALFMDEISTGLDSSTTFQIVN-CFKQNIHINSGTAVISLLQPAPETYN 390 (1106)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~-~l~~~~~~~~~t~ii~i~q~~~~~~~ 390 (1106)
+.+..++++||+.+|=|+.....+.. .++.+.. .+..++++ +|.. ++..
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~t-TH~~-eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFA-THYF-ELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEE-CCCH-HHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEe-eech-hhhh
Confidence 45567999999999999988877774 4444443 44555444 4443 4444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.00065 Score=69.97 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=34.8
Q ss_pred hcCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhC-CceEEEEecCcc
Q 001291 1011 VANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPS 1056 (1106)
Q Consensus 1011 ~~~p~illLDEPTsgLD~~~~~~i~~-~l~~~~~~-g~tvi~~tH~~~ 1056 (1106)
+.+.+++|+||+..|=|+.....+.. ++..+..+ +..+|++||..+
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHH
Confidence 44567999999999999977766654 46667554 567899999764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.00037 Score=71.88 Aligned_cols=45 Identities=11% Similarity=0.053 Sum_probs=30.7
Q ss_pred hcCCccceeecCCCCCCHHHHHHHHHH-HHHHHHhcCCeEEEEEecC
Q 001291 339 VGPALALFMDEISTGLDSSTTFQIVNC-FKQNIHINSGTAVISLLQP 384 (1106)
Q Consensus 339 ~~~p~vllLDEptsgLD~~~~~~i~~~-l~~~~~~~~~t~ii~i~q~ 384 (1106)
..+..++++||+.+|=|+.....+... ++.+... ....+++.||.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~ 163 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHY 163 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSC
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecch
Confidence 445579999999999999998888754 5555443 33344444444
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.77 E-value=0.00034 Score=73.99 Aligned_cols=32 Identities=28% Similarity=0.329 Sum_probs=26.9
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
|+++..-+.+|+++.|.|++|+|||||+.-|+
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 45555558999999999999999999987776
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=0.00038 Score=70.86 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=25.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEE
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVT 213 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1106)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhh---ccCcc
Confidence 36789999999999999999999976543 67664
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.58 E-value=0.00052 Score=66.70 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|++++|.|||||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999999998764
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.47 E-value=0.0088 Score=61.09 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=25.4
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
|=+++|+++.|.||||||||||+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 45889999999999999999998777654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=7.4e-05 Score=74.64 Aligned_cols=31 Identities=29% Similarity=0.320 Sum_probs=27.3
Q ss_pred eeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 872 LNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 872 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+++.++.+.+| +++|+|+|||||||++++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 56778888876 89999999999999999985
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.00049 Score=66.44 Aligned_cols=25 Identities=36% Similarity=0.304 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++|.|++|||||||++.|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999976554
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.43 E-value=0.017 Score=60.23 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=27.7
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
-|+++.+=+.||++++|.|+||+|||||+.-|+-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4454444478999999999999999999888774
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.00057 Score=67.48 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|++++|+||||||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999988764
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=8.3e-05 Score=74.22 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=29.2
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-+++.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 456777788777 99999999999999999997443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0011 Score=64.14 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.3
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.+.++.|+|||||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.19 E-value=0.00041 Score=70.76 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEE
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVT 213 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~ 213 (1106)
+|+.++++|+||+|||||+|+|.|...-. +|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhh---hcccc
Confidence 36788999999999999999999976543 67665
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.00083 Score=65.04 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++++|+|++|||||||++.|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999998877653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.06 E-value=0.0012 Score=64.92 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
|.++.|+||||||||||++.|...
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhh
Confidence 889999999999999999999764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.06 E-value=0.0014 Score=63.64 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.1
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|.++.|.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999997764
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.0015 Score=66.24 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+|..++++|+||+|||||+|.|.|..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 58899999999999999999999853
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.00046 Score=67.40 Aligned_cols=27 Identities=44% Similarity=0.649 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
+.+.|.||||+|||||++.++..+...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 357899999999999999999987654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.93 E-value=0.0018 Score=61.25 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+++.|.||||||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999998754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.89 E-value=0.0015 Score=63.55 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+.++|.||+|||||||.+.|+-.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998763
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0018 Score=62.20 Aligned_cols=21 Identities=48% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|++|||||||++.|..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999985
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.78 E-value=0.0022 Score=61.64 Aligned_cols=24 Identities=38% Similarity=0.607 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+++|.|||||||||+.+.|+..+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999875
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.76 E-value=0.0022 Score=61.99 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+|-.++|.|||||||||+.+.|+-.+.
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 466789999999999999999997753
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.71 E-value=0.014 Score=60.77 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=32.9
Q ss_pred HHhcCCCeEEEeCCCCC-----CCHHHHHHHHHHHHHHHh-CCceEEEEecC
Q 001291 1009 ELVANPSIIFMDEPTSG-----LDARAAAIVMRTVRNTVD-TGRTVVCTIHQ 1054 (1106)
Q Consensus 1009 aL~~~p~illLDEPTsg-----LD~~~~~~i~~~l~~~~~-~g~tvi~~tH~ 1054 (1106)
+-..+|+++++|--++- -|......+++.|+.+++ .|+|||++.|-
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34578999999965431 255666677777877764 48999999883
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.67 E-value=0.0022 Score=61.69 Aligned_cols=22 Identities=55% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|||||||||+.+.|+-++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0026 Score=64.02 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|.++.|+||||||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999999987654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.018 Score=59.88 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=31.3
Q ss_pred HhcCCccceeecCCCC-----CCHHHHHHHHHHHHHHHHhcCCeEEEEEecCh
Q 001291 338 MVGPALALFMDEISTG-----LDSSTTFQIVNCFKQNIHINSGTAVISLLQPA 385 (1106)
Q Consensus 338 l~~~p~vllLDEptsg-----LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~ 385 (1106)
...+++++++|--++- -|.....++++.|+.++...+.+ ++.+||..
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~-vi~v~H~~ 180 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHAS 180 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC-
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCc-eehhhhcc
Confidence 3468899999965431 25566678888888887765544 55566654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.61 E-value=0.0021 Score=61.99 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++.|.|||||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999999874
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.58 E-value=0.003 Score=61.02 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.|+++.|.||+||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998754
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0034 Score=62.59 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=26.4
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|=+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999998887643
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.47 E-value=0.0029 Score=62.76 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 48999999999999999999963
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.34 E-value=0.0037 Score=60.13 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.9
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+.+.++.|+|++||||||+.+.|+...
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.30 E-value=0.0038 Score=60.64 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++++|.|++||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58899999999999999999876643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.29 E-value=0.004 Score=61.64 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+++|+|||||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999999999998653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.29 E-value=0.0017 Score=66.09 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+|..++++|+||+|||||+|.|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~ 120 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPE 120 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred ccceEEEECCCCccHHHHHHhhccH
Confidence 4788899999999999999999985
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.27 E-value=0.0028 Score=62.96 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.7
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.+.++.|+|||||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999998764
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0041 Score=62.49 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.|.++.|+||||+|||||++.|.-
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~ 24 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLK 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999998874
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0039 Score=59.02 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+.|+||+||||||+-+.|+-.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367889999999999999998763
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.19 E-value=0.0041 Score=63.56 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|+||+|||||||++.|...+
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999997543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.15 E-value=0.0046 Score=60.95 Aligned_cols=26 Identities=42% Similarity=0.632 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+|--++|+|||||||||+.+.|+-.+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 56667799999999999999999653
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.09 E-value=0.003 Score=62.20 Aligned_cols=27 Identities=37% Similarity=0.400 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|.++.|.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999987654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.06 E-value=0.005 Score=59.36 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=23.4
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|-++.|+|++||||||+-+.|+-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999999853
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.03 E-value=0.0053 Score=60.79 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+++|+|||||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999865
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.98 E-value=0.0047 Score=60.23 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|++|+|||||+++|.|.-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6899999999999999999963
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=94.97 E-value=0.005 Score=60.94 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.+||+|++|||||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 49999999999999999999853
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.93 E-value=0.0053 Score=59.08 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=24.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC-CCceeEEEEEEcC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK-TGGYITGDIRISG 919 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~-~~~~~~G~i~i~g 919 (1106)
+++|+|++|||||||+.-|.... ..|...|.|.-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 68999999999999999887632 1233345554333
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.91 E-value=0.0053 Score=59.79 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=94.88 E-value=0.006 Score=58.67 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
++|-.++|.||+||||||+.+.|+-..
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.87 E-value=0.0039 Score=61.17 Aligned_cols=21 Identities=43% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.86 E-value=0.0051 Score=63.97 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=23.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
..++|.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 46889999999999999999998753
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.85 E-value=0.0064 Score=58.68 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.|+|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0063 Score=60.07 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++|+|||||||||..+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.73 E-value=0.0058 Score=60.15 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|+|||||||||+.+.|+-.+
T Consensus 6 I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999998765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.72 E-value=0.0055 Score=59.32 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..++|+|+.|||||||.+.|+..
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.71 E-value=0.0065 Score=59.66 Aligned_cols=24 Identities=38% Similarity=0.333 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 688999999999999999986543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.70 E-value=0.0072 Score=58.76 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
+-+++.++|+|||||||+.+.++-
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346999999999999999998854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.64 E-value=0.007 Score=58.03 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|+|+|||||||+.++||-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999875
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.0077 Score=58.92 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++.|+||||||||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.044 Score=56.56 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
.-+-|.||.|+|||+|.+.|+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~ 67 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAG 67 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHH
Confidence 3466999999999999999996
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.0072 Score=59.49 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|+||||||||||++.|+-..+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999987654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.0062 Score=60.64 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|||||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999863
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=94.56 E-value=0.0079 Score=56.53 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999998764
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.0079 Score=58.75 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-++|+|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.51 E-value=0.0082 Score=58.63 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|+|||||||||+.+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999765
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.0094 Score=56.61 Aligned_cols=23 Identities=43% Similarity=0.720 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-++|+|++|+|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.48 E-value=0.0078 Score=58.57 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|+|++|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.0093 Score=56.65 Aligned_cols=25 Identities=40% Similarity=0.759 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
|=.++|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5578999999999999999999853
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.41 E-value=0.006 Score=59.69 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+||+|+.++|||||++.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999873
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.40 E-value=0.0074 Score=56.94 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 579999999999999999764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.38 E-value=0.0067 Score=59.10 Aligned_cols=21 Identities=38% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999986
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.36 E-value=0.01 Score=57.71 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999963
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.36 E-value=0.01 Score=57.47 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.++|+|.+|+|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.34 E-value=0.0067 Score=65.25 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.8
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCCCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKLDPS 205 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~ 205 (1106)
++.|.-++|.||.||||||||++|++.+++.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence 3455668999999999999999999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.34 E-value=0.0071 Score=58.55 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-++|+|++|+|||||++.|.|..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46799999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.0099 Score=60.43 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=25.4
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
|=+++|+++.|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999877643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.29 E-value=0.0095 Score=57.53 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|+|++||||||+-+.||-.+
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.0094 Score=58.87 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|+||||||||||++.|+-..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999977643
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.27 E-value=0.009 Score=58.58 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
-++||.|++|||||||.+.|.-
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999974
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.0082 Score=56.64 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|++|+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999863
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.27 E-value=0.0094 Score=58.07 Aligned_cols=22 Identities=59% Similarity=0.877 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|||||||||+-+.|+-.+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.26 E-value=0.0095 Score=58.79 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|||||||||+-+.|+-.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999765
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.0086 Score=57.77 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+.|.||+|+|||||++.++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999973
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.009 Score=58.13 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|||||||||..+.|+-.+
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999998654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=94.21 E-value=0.011 Score=56.78 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..++.|.|++||||||+.+.|+...
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l 27 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4688999999999999999999754
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.19 E-value=0.011 Score=57.15 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+++|+|.+|+|||||+|.|+|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.01 Score=57.89 Aligned_cols=22 Identities=36% Similarity=0.679 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|+|||||||||+.+.|+-.+
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.16 E-value=0.011 Score=57.07 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.14 E-value=0.01 Score=56.91 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+.|+|++||||||+-+.|+-.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999997763
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.10 E-value=0.034 Score=57.16 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+-|.||.|+|||+|.+.|+..
T Consensus 45 iLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCChhHHHHHHHHH
Confidence 579999999999999999964
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.10 E-value=0.011 Score=58.63 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++++|.||||||||.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997553
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.09 E-value=0.012 Score=57.43 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+=.+||+|..|+|||||++.|+|..
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3468999999999999999999853
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.0099 Score=58.42 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|+||||||||||++.|+..
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999998753
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.06 E-value=0.018 Score=58.41 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.3
Q ss_pred eEEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 172 SGIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 172 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.|=+++|+++.|.|+||+|||||..-++-..
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999999988776543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.06 E-value=0.01 Score=57.38 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-.++|+|++|||||||++.|.+.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999999884
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.00 E-value=0.012 Score=56.22 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|++|||||||++.|.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHcCCC
Confidence 6899999999999999999864
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.012 Score=57.49 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+.|+||||+|||||++-|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999988753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=93.98 E-value=0.012 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++.|.||+||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999998643
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.96 E-value=0.01 Score=56.32 Aligned_cols=22 Identities=41% Similarity=0.499 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|++|+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999998763
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.95 E-value=0.013 Score=57.02 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++.|.|++||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46788999999999999999987643
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.83 E-value=0.013 Score=56.78 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+++|+|.+|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.014 Score=58.55 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|.|||||||||+-+.|+-.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999998764
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.80 E-value=0.013 Score=57.13 Aligned_cols=21 Identities=33% Similarity=0.298 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++.||||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999975
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=93.79 E-value=0.012 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.+.|+||+||||||+-+.|+-..
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.008 Score=58.32 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|++++|||||+|+|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999863
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.78 E-value=0.011 Score=60.26 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999974
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.76 E-value=0.017 Score=59.08 Aligned_cols=27 Identities=37% Similarity=0.449 Sum_probs=23.3
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHh
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1106)
|=+++|+++.|.||||||||||..-++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458999999999999999999976443
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.75 E-value=0.0095 Score=57.96 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+||+|..|+|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.75 E-value=0.012 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-.++|+|++++|||||+|.|.|..
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=93.75 E-value=0.013 Score=56.04 Aligned_cols=20 Identities=50% Similarity=0.601 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
+.|+||.||||||+.+.|+-
T Consensus 7 I~i~G~pGsGKTTia~~La~ 26 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELAS 26 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999985
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.70 E-value=0.11 Score=57.24 Aligned_cols=29 Identities=38% Similarity=0.594 Sum_probs=24.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.++-+++|.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 35569999999999999999999887653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.63 E-value=0.015 Score=58.39 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|-|||||||||+-+.|+-.+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467889999999999999998764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.57 E-value=0.014 Score=57.58 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
++|+||||||||||++.|+-
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~ 22 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQ 22 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.013 Score=55.10 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++|+|++|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999974
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.52 E-value=0.016 Score=55.97 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+++|.|+.||||||+.+.|+-
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999975
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.01 Score=58.14 Aligned_cols=24 Identities=46% Similarity=0.547 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.|.++.|+|++||||||+-+.|+-
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.41 E-value=0.014 Score=57.97 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.35 E-value=0.017 Score=55.61 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3679999999999999999985
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.32 E-value=0.016 Score=57.71 Aligned_cols=22 Identities=36% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.32 E-value=0.018 Score=57.50 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|-||+|||||||.+.|+-.+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999987653
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.22 E-value=0.018 Score=59.73 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-++|+|.+|+|||||+|.|.|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 37899999999999999999974
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.22 E-value=0.016 Score=54.50 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+|+.|+|||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999986
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=0.066 Score=55.50 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
..-+-|.||+|+|||+|.+.|++..
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3346699999999999999999743
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.09 E-value=0.0062 Score=57.91 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999985
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.04 E-value=0.017 Score=54.63 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|.+|+|||||++.+.+.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.02 Score=57.22 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++||-|++|||||||.+.|+-
T Consensus 4 iIgI~G~~gSGKSTla~~L~~ 24 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQ 24 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.03 E-value=0.015 Score=62.40 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.-.++|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999986543
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.96 E-value=0.023 Score=57.86 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.9
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G 200 (1106)
|=+++|+++.|.||||||||||..-++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999999877764
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.94 E-value=0.022 Score=58.93 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++|+|.+|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.026 Score=55.69 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=25.2
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++.|.||+|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 5689999999999999999999877764
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.81 E-value=0.026 Score=55.43 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..++.|+||.||||||+.+.|+-
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~ 28 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999984
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.76 E-value=0.023 Score=57.77 Aligned_cols=24 Identities=50% Similarity=0.744 Sum_probs=21.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
+++.||||+||||+.++|+..+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHhccCC
Confidence 689999999999999999987654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.74 E-value=0.024 Score=57.42 Aligned_cols=22 Identities=59% Similarity=0.819 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.||||+|||||.++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999865
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.72 E-value=0.025 Score=57.91 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
..+|.||||+||||+.++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.70 E-value=0.027 Score=56.61 Aligned_cols=33 Identities=30% Similarity=0.456 Sum_probs=25.8
Q ss_pred eeece-eEEEeCceEEEEEcCCCCCHHHHHHHHh
Q 001291 167 ILKDV-SGIVKPGRLTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 167 iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~ 199 (1106)
-|+++ +|=+++|+++.|.|+||+|||||..-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34443 3459999999999999999999975443
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.022 Score=60.70 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.-++++||||+|||.|.++||..+.
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 4557899999999999999998754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=92.60 E-value=0.024 Score=54.09 Aligned_cols=21 Identities=38% Similarity=0.618 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+.|+|++||||||+-+.|+..
T Consensus 3 I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999854
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.58 E-value=0.028 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999999984
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.47 E-value=0.023 Score=57.81 Aligned_cols=23 Identities=52% Similarity=0.778 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++.||||+|||||.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999998754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.42 E-value=0.033 Score=55.67 Aligned_cols=43 Identities=28% Similarity=0.337 Sum_probs=29.6
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNM 219 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~ 219 (1106)
+.|.++-+.|.||||||||.+.|+-.+.... ---.+.++|-.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDR-RVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CceEEEEcchHH
Confidence 4678899999999999999999986542210 012355666443
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=92.38 E-value=0.031 Score=54.67 Aligned_cols=25 Identities=44% Similarity=0.531 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
++|-.+.|+||.||||||+-+.|+-
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999999999999984
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.36 E-value=0.027 Score=54.67 Aligned_cols=21 Identities=38% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+||+|...||||||++.|+|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999974
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.029 Score=56.05 Aligned_cols=28 Identities=32% Similarity=0.363 Sum_probs=24.8
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987654
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.33 E-value=0.026 Score=53.81 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 578999999999999988654
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.029 Score=59.46 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIG 239 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1106)
+++|-|++||||||+.+.|...+... .....+..|++++.+.+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~ 124 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHP 124 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhh-----------------cCCCceEEEeeeeeECC
Confidence 78999999999999999988766421 00125778888887765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.28 E-value=0.028 Score=54.09 Aligned_cols=21 Identities=57% Similarity=0.722 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999775
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=92.22 E-value=0.024 Score=60.75 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=26.9
Q ss_pred eeeeeeCCeEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 875 VSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 875 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
+...++.|..+.|.|+.||||||||++|++..+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence 344456677789999999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.14 E-value=0.034 Score=57.46 Aligned_cols=27 Identities=41% Similarity=0.652 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+..-+++.||||+|||+|.++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445578999999999999999998754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.03 E-value=0.033 Score=54.51 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
+++|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678999999999999999863
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.02 E-value=0.036 Score=56.87 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.-++|.||||+|||+|.++||...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 357899999999999999999864
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.01 E-value=0.034 Score=62.08 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQH 234 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~ 234 (1106)
=++++||+|||||-|.+.||+.+.- --+..++..++ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeecceee------ecceeecc
Confidence 3689999999999999999998752 34566665544 48999985
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.93 E-value=0.031 Score=56.55 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+++|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4899999999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=91.93 E-value=0.031 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.256 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
-+++|-|+.||||||+++.|+..+.
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998663
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=91.92 E-value=0.032 Score=53.52 Aligned_cols=21 Identities=33% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+|++||||||+-+.|+-
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~ 24 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELAR 24 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.91 E-value=0.035 Score=59.31 Aligned_cols=25 Identities=32% Similarity=0.339 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.-.++|.||||||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998653
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=91.89 E-value=0.036 Score=53.59 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5678899999999999999863
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.87 E-value=0.034 Score=57.18 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++.++|.||+|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999887654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.85 E-value=0.01 Score=56.23 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999984
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.82 E-value=0.028 Score=57.78 Aligned_cols=23 Identities=52% Similarity=0.819 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++.||||+|||+|.++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.82 E-value=0.039 Score=54.94 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=22.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+.+++++||+|+||||.+-=||-.+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999877776543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.75 E-value=0.039 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.|.+++|-|+.||||||+.+.|+..+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987664
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.75 E-value=0.04 Score=53.17 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++.++|++||||||+.+-++.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998863
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.75 E-value=0.038 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
=.++|+|..|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999999854
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.028 Score=56.90 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=24.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999999875
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.041 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-.++.|+||.||||||+.+.|+..
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 446899999999999999999853
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.67 E-value=0.027 Score=58.60 Aligned_cols=27 Identities=41% Similarity=0.678 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+..-++|.||||+|||+|.++|++.+.
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 444588999999999999999999863
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.65 E-value=0.084 Score=50.89 Aligned_cols=35 Identities=31% Similarity=0.255 Sum_probs=27.4
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
..|+.....+ .|.=++|.||||+|||||...|.-+
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 3456444444 8899999999999999999888753
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.64 E-value=0.037 Score=52.83 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+.|+|+.||||||+-+.|+.+
T Consensus 4 IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.64 E-value=0.79 Score=46.93 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=25.4
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-++.|.++-|-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHH
Confidence 6788999999999999999999877775
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=91.63 E-value=0.032 Score=54.51 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++.|+||.||||||+.+.|+-
T Consensus 5 ~I~i~GppGsGKsT~a~~La~ 25 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKT 25 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.61 E-value=0.035 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.643 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999988653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.037 Score=61.07 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|.+|+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999964
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.55 E-value=0.036 Score=53.23 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999998754
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=91.50 E-value=0.044 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.+++++||+|+||||.+-=|+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999766664
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.41 E-value=0.037 Score=54.30 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.6
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+.+.++.|+||.||||||+.+.|+-
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~ 30 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQ 30 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999985
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.36 E-value=0.042 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+++++|.+|+|||||.+.|+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~ 24 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTR 24 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999985
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.27 E-value=0.047 Score=55.98 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
...++|.||+|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 347889999999999999999987754
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.25 E-value=0.04 Score=52.40 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999997764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.23 E-value=0.044 Score=55.31 Aligned_cols=22 Identities=50% Similarity=0.901 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+.|-||+|+|||||.++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.15 E-value=0.041 Score=52.96 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.039 Score=52.61 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.97 E-value=0.038 Score=54.71 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999873
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=90.95 E-value=0.054 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.-+++|-|+.||||||+++.|....
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998643
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.053 Score=52.62 Aligned_cols=21 Identities=38% Similarity=0.523 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999998864
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.92 E-value=0.051 Score=54.26 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-.+++++||+|+||||.+-=|+-
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445889999999999998766664
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.91 E-value=0.064 Score=50.71 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.0
Q ss_pred EeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 175 VKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 175 i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+||.+++|-|+=|||||||.+.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 3589999999999999999999998665
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.89 E-value=0.06 Score=55.64 Aligned_cols=30 Identities=43% Similarity=0.604 Sum_probs=26.3
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|=+++|++|.|.||||||||||+..++-..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHHHH
Confidence 568999999999999999999987777654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.055 Score=53.95 Aligned_cols=25 Identities=44% Similarity=0.534 Sum_probs=22.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+.|-+++|-|+-||||||+.+.|..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999998875
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.052 Score=53.06 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++.|+||.||||||..+.|+-
T Consensus 3 iI~i~GppGSGKsT~a~~La~ 23 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVE 23 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999984
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=90.79 E-value=0.051 Score=53.05 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhh
Q 001291 884 LTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~ 903 (1106)
++||.|+.||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 78999999999999999985
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.76 E-value=0.054 Score=52.19 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVA 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367999999999999999974
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.71 E-value=0.099 Score=50.33 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=26.6
Q ss_pred eeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 167 ILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.|+. |...-.|.=++|.|+||+|||||...|..+
T Consensus 4 ~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 4443 445567889999999999999999887754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.70 E-value=0.068 Score=53.15 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
..+++++||+|+||||.+--||-.+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45889999999999999888886653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.68 E-value=0.029 Score=60.31 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
-++|.||||+|||||++.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 4789999999999999999999865
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=90.66 E-value=0.06 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.7
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
++|-++-|.|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999999874
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.65 E-value=0.065 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|+|...+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEeccCCcHHHHHHHHHhhhh
Confidence 68999999999999999998653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.049 Score=52.28 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999987654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.65 E-value=0.048 Score=60.15 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+||+|.+|+|||||+|.|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=90.55 E-value=0.049 Score=51.74 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998876
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.55 E-value=0.059 Score=51.62 Aligned_cols=22 Identities=45% Similarity=0.641 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.062 Score=51.27 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999987763
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.44 E-value=0.067 Score=51.04 Aligned_cols=23 Identities=43% Similarity=0.680 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|+|++|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 68999999999999999988643
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.42 E-value=0.058 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
++|.||||+|||+|.++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999999753
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.37 E-value=0.059 Score=54.06 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++-||+|+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 5789999999999999998764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.063 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.585 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-.+++++||+|+||||.+-=|+-
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999998877774
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.29 E-value=0.051 Score=51.65 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999987664
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.052 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=90.22 E-value=0.062 Score=53.61 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|.||.||||||+-+.|+-
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~ 25 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAK 25 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.074 Score=50.95 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|++|+|||||++.+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987754
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=90.20 E-value=0.058 Score=57.63 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..-++||.||.|||||||++.|..
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHH
Confidence 467899999999999999999974
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.20 E-value=0.054 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.421 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
++++|..|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.20 E-value=0.044 Score=53.03 Aligned_cols=21 Identities=43% Similarity=0.548 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 569999999999999988654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.16 E-value=0.058 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.13 E-value=0.054 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.055 Score=51.77 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999997664
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.11 E-value=0.063 Score=53.86 Aligned_cols=22 Identities=45% Similarity=0.868 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
+++-||+|+||||+.++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999999764
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.10 E-value=0.052 Score=55.83 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRKT 907 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~~ 907 (1106)
..+.|.||+|||||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4578999999999999999998543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=90.01 E-value=0.068 Score=51.68 Aligned_cols=21 Identities=43% Similarity=0.577 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+||.||||||+.+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~ 22 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVE 22 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999985
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.058 Score=51.28 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|.+|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999998876
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.069 Score=53.88 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
++.+++|-|+-||||||+++.|+...
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l 26 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLC 26 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999754
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.15 Score=49.25 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++|+|+.|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999863
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.059 Score=51.60 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 378999999999999999875
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.89 E-value=0.075 Score=53.08 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=25.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
.|.+++|=|+-||||||+.+.|+-.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5899999999999999999999987754
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=89.85 E-value=0.078 Score=52.67 Aligned_cols=23 Identities=43% Similarity=0.432 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..++.++||+|+||||.+-=|+-
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~ 32 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLAL 32 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999877774
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.83 E-value=0.09 Score=50.31 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 6899999999999999998764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.79 E-value=0.064 Score=51.94 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998774
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.78 E-value=0.064 Score=50.98 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887754
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=89.73 E-value=0.076 Score=52.60 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001291 180 LTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1106)
+++|.|+.||||||+.++|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 67899999999999999996
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=89.73 E-value=0.089 Score=52.44 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-.+++++||+|+||||.+-=||-++
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3488999999999999987777654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.72 E-value=0.052 Score=55.96 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++.|.||||+||||++++++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999875
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.69 E-value=0.084 Score=53.08 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=24.3
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+-+++|+++-|.|+.|+|||||..-++
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 468999999999999999999987665
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.69 E-value=0.053 Score=51.95 Aligned_cols=22 Identities=41% Similarity=0.511 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|+|++|+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 5699999999999999998654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.68 E-value=0.065 Score=51.56 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=89.62 E-value=0.13 Score=49.22 Aligned_cols=35 Identities=26% Similarity=0.226 Sum_probs=27.6
Q ss_pred eeeeceeEEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 166 TILKDVSGIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+.|+. ++..-.|.=++|.|+||+|||||...|.-+
T Consensus 4 t~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 4 TSLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred eeEEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 34555 555678999999999999999998777654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.55 E-value=0.079 Score=50.19 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.50 E-value=0.078 Score=51.05 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.46 E-value=0.071 Score=50.44 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.1
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.42 E-value=0.082 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=16.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 178 GRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 178 G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-.+++++||+|+||||.+-=||-.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999988787554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=89.38 E-value=0.049 Score=56.85 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=16.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 799999999999999998864
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.36 E-value=0.067 Score=50.61 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988753
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=89.30 E-value=0.097 Score=49.43 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=24.3
Q ss_pred eeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 878 AFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 878 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..+||.++.|-|+=||||||+.+.++.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHh
Confidence 346899999999999999999999984
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.29 E-value=0.073 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
-.++++|++|+|||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4578999999999999999876
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.29 E-value=0.07 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.23 E-value=0.056 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=8.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.22 E-value=0.07 Score=54.28 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHHHHhCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
++|.||+|+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6899999999999999998753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.22 E-value=0.068 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999987753
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=89.20 E-value=0.091 Score=52.14 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
+++|.|++||||||..++|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 679999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.19 E-value=0.089 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++-+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999998876
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.07 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=0.091 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+|.+++|-|+-||||||+.+.|..
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999999875
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.04 E-value=0.088 Score=50.73 Aligned_cols=21 Identities=43% Similarity=0.438 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+||.||||||+-+.|+-
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~ 22 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAE 22 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999984
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=89.04 E-value=0.085 Score=52.51 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=15.8
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.-.+++++||+|+||||.+-=|+-
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999776764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.083 Score=55.78 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
=++||.|++||||||+-+.|..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCcHHHHHHHH
Confidence 3789999999999999888764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=89.03 E-value=0.1 Score=51.82 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+++++||+|+||||.+-=||-.+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999888886553
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.92 E-value=0.075 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.707 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++||+|...||||||++.|.+
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~ 27 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRG 27 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHh
Confidence 499999999999999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.90 E-value=0.092 Score=49.75 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++++|.+|+|||||++.+.+
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998775
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=88.88 E-value=0.09 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+++|.||.||||||+-+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999999853
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.1 Score=49.68 Aligned_cols=22 Identities=32% Similarity=0.643 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++|+|..|+|||||++.+.+.
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCcCHHHHHHHHhCC
Confidence 4789999999999999999884
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.67 E-value=0.1 Score=52.06 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+|.+++|-|+-||||||+.+.|.-..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence 68999999999999999999998643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.67 E-value=0.082 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
-.++|+|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=88.63 E-value=0.096 Score=51.81 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhh
Q 001291 884 LTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~ 903 (1106)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.62 E-value=0.14 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999975
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.066 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=17.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999987654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.088 Score=49.99 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=18.0
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998765
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=88.60 E-value=0.062 Score=56.02 Aligned_cols=24 Identities=13% Similarity=0.264 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|-|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 789999999999999999987653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.51 E-value=0.097 Score=52.61 Aligned_cols=28 Identities=32% Similarity=0.499 Sum_probs=24.7
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|+++-|.|++|+|||||..-++-
T Consensus 29 GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 29 GGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999999777753
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.46 E-value=0.11 Score=51.13 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.40 E-value=0.11 Score=49.35 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999998875
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=88.38 E-value=0.23 Score=47.63 Aligned_cols=34 Identities=32% Similarity=0.305 Sum_probs=27.6
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++.-...+ .|.=+.|.|++|+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 566666666 6888999999999999998877643
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.085 Score=50.63 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|++|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999987754
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=88.32 E-value=0.12 Score=51.55 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=37.6
Q ss_pred cCCCeEEEeCCCCCC----C-HHHHHHHHHHHHHHHhCCceEEEEecCccH--------HHHHhcCeEEEEe
Q 001291 1012 ANPSIIFMDEPTSGL----D-ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELFLMK 1070 (1106)
Q Consensus 1012 ~~p~illLDEPTsgL----D-~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~--------~~~~~~D~v~~l~ 1070 (1106)
.+|+++++|=-+.-. + ....+.+.+.++.+++.|+|+++++|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 378999999765432 2 233344445555556679999999985431 1334678888775
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.29 E-value=0.096 Score=49.87 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988864
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.22 E-value=0.091 Score=50.79 Aligned_cols=21 Identities=38% Similarity=0.613 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998875
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.12 E-value=0.094 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+.|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 378999999999999998775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.10 E-value=0.13 Score=51.99 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=23.4
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+-+++|+++.|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 458899999999999999999976543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.08 E-value=0.099 Score=49.75 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3679999999999999976643
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.094 Score=50.18 Aligned_cols=21 Identities=19% Similarity=0.354 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
-++|+|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.97 E-value=0.095 Score=49.96 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.93 E-value=0.12 Score=53.77 Aligned_cols=51 Identities=25% Similarity=0.394 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCceeEEEECCccCCCCCccceEEEEcCCCCCCCCCCHHHHHHH
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLDPSLKVSGRVTYNGHNMDEFVPERTAAYISQHDNHIGEMTVRETLAF 249 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 249 (1106)
+++|-|++|||||||.+.|.-.+... .| ....++.++.+|.+ +|-.|-...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~~L 79 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQLKL 79 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHHHHH---hC-------------CCcceEeeccCCCC---CCHHHHHHH
Confidence 78999999999999998876543210 00 02247788887754 454444433
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.91 E-value=0.12 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=87.88 E-value=0.12 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
-.+.|+||.||||||+-+.|+-
T Consensus 7 mrIiliG~PGSGKtT~a~~La~ 28 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITK 28 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 3678999999999999999985
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.86 E-value=0.099 Score=49.56 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998876
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.85 E-value=0.1 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.84 E-value=0.1 Score=49.62 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=17.8
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997644
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.79 E-value=0.11 Score=49.59 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++.+++
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998876
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.13 Score=49.19 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
++.|+|..|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999999873
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=87.74 E-value=0.24 Score=47.51 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=26.1
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhCC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.++.--..+ .|.=+.|+|++|+|||||...|..+
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 455555544 5778999999999999998877643
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.71 E-value=0.11 Score=55.08 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|-|-+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 799999999999999999985
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.69 E-value=0.12 Score=49.72 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.|+||.||||||+.+.|+-
T Consensus 4 rIvl~G~pGSGKtT~a~~La~ 24 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQE 24 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999984
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.65 E-value=0.14 Score=51.61 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.8
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|.++.|.|++|+|||||..-++-
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999999999877763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.56 E-value=0.11 Score=49.16 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.49 E-value=0.13 Score=48.76 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999875
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.42 E-value=0.11 Score=49.32 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++++|.+|+|||||++-+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988843
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.40 E-value=0.12 Score=51.95 Aligned_cols=20 Identities=40% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
+-|.||+|+|||||.++|+.
T Consensus 48 lll~Gp~G~GKTtla~~iak 67 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAR 67 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 67999999999999999986
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=87.39 E-value=0.12 Score=54.96 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..-.+||.|+-|||||||++.|..
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHH
Confidence 356899999999999999999985
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.32 E-value=0.12 Score=49.26 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 001291 180 LTLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G 200 (1106)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.30 E-value=0.13 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998874
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.26 E-value=0.11 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999988875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.18 E-value=0.14 Score=52.30 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 881 PGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 881 ~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+..+.|.||.|+|||||++.++.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 456889999999999999998874
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.17 E-value=0.1 Score=56.40 Aligned_cols=28 Identities=43% Similarity=0.411 Sum_probs=24.9
Q ss_pred eCceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 176 KPGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 176 ~~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
+.+..+++.||||+||||+.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999999863
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.16 E-value=0.12 Score=49.15 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999998765
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.15 E-value=0.15 Score=51.44 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.3
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhh
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~ 903 (1106)
+-|++|.++.|.|++|+|||||...++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999999987665
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.13 E-value=0.14 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|.-+||||||+++|.|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 46899999999999999999974
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.97 E-value=0.14 Score=48.99 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++.|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.93 E-value=0.12 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.-+.++||+|+|||+|.++|+..
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhc
Confidence 34569999999999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.88 E-value=0.15 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.+-|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999743
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.87 E-value=0.14 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.341 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++|+|+.+||||||++.|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHH
Confidence 68999999999999999964
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.14 Score=50.68 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhhh
Q 001291 884 LTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~ 903 (1106)
++||.|..||||||..+.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999986
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.76 E-value=0.15 Score=48.66 Aligned_cols=20 Identities=35% Similarity=0.619 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
++|+|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.69 E-value=0.13 Score=49.37 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998875
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.67 E-value=0.15 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-.+.|+|++|+|||||++.+.+.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.48 E-value=0.15 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 488999999999999999999964
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.46 E-value=0.13 Score=48.68 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.21 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++++|++|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4689999999999999977654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.16 Score=49.53 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 88999999999999998774
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=86.25 E-value=0.18 Score=53.41 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 177 PGRLTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 177 ~G~~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
|....+++||+|+|||.|.+.||-.+.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CceEEEEECCCcchhHHHHHHHHhhcc
Confidence 444678999999999999999998653
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.20 E-value=0.16 Score=49.77 Aligned_cols=21 Identities=57% Similarity=0.896 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|-|.-||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999985
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.14 E-value=0.19 Score=52.10 Aligned_cols=24 Identities=46% Similarity=0.767 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
-+++|+||-++|||||||.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999999854
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.10 E-value=0.16 Score=49.24 Aligned_cols=20 Identities=45% Similarity=0.612 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001291 180 LTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1106)
-++|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36799999999999999883
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.09 E-value=0.17 Score=48.31 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.87 E-value=0.17 Score=48.93 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999887643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.86 E-value=0.12 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=9.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998776
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.85 E-value=0.17 Score=52.25 Aligned_cols=29 Identities=41% Similarity=0.596 Sum_probs=24.5
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
+=++.|++|.|.||+|||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCcccceeEEEecCCCcHHHHHHHHHHHH
Confidence 45789999999999999999997666543
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.82 E-value=0.15 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999997764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.81 E-value=0.16 Score=48.12 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|.+|+|||||++-+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.77 E-value=0.18 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHhhhC
Q 001291 885 TALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g 904 (1106)
++|+|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 88999999999999998764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=85.76 E-value=0.17 Score=53.51 Aligned_cols=29 Identities=34% Similarity=0.476 Sum_probs=23.6
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
...+.| ..++.||||+|||.|.++|++.+
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444 66778999999999999999975
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.75 E-value=0.18 Score=48.52 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.67 E-value=0.16 Score=50.97 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++.|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6889999999999999998764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.65 E-value=0.17 Score=52.92 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.++|+|.-+||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.54 E-value=0.17 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+.|.||+|+|||||.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 579999999999999999863
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=85.41 E-value=4.9 Score=40.75 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCCHHHHHHhhhC
Q 001291 882 GVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 882 Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
..+++|.|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999998853
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=85.36 E-value=0.19 Score=55.09 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1005 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1005 ~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+|..+|=.+|+||++.|.. |++++.... +.+.+|.-|+.|.|-.+
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~ 263 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT 263 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHH----HHHhcCCeEEEEeccCc
Confidence 3555677899999999997 666666554 44567999999999654
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.33 E-value=0.2 Score=47.55 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998884
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=85.23 E-value=0.19 Score=52.18 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.5
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+.|-.|+..+|+|++|+|||||+..|+.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence 5677899999999999999999998885
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.23 E-value=0.2 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 578999999999999998885
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.15 E-value=0.22 Score=51.32 Aligned_cols=30 Identities=47% Similarity=0.715 Sum_probs=26.8
Q ss_pred EEEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 173 GIVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 173 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
|=++.|++|-|-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCceEEEEecCCccchHHHHHHHHHHH
Confidence 568899999999999999999998887754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.02 E-value=0.25 Score=51.25 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999975
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.98 E-value=0.17 Score=49.19 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHhCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~ 201 (1106)
++|+|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877643
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.98 E-value=0.2 Score=50.06 Aligned_cols=26 Identities=31% Similarity=0.370 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh-CCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALA-GKLDPS 205 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~-G~~~~~ 205 (1106)
-++|+|++|+|||||++-+. +...|+
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pT 34 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLT 34 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCC
Confidence 46899999999999999874 333444
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.92 E-value=0.2 Score=52.10 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHhhh
Q 001291 883 VLTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~ 903 (1106)
=++||-|+.|||||||-+.|.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHH
Confidence 378999999999999988775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=84.92 E-value=0.19 Score=50.56 Aligned_cols=21 Identities=43% Similarity=0.640 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+-+.||.|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 569999999999999999864
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=84.88 E-value=0.21 Score=47.31 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998764
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=84.81 E-value=0.2 Score=52.03 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=25.1
Q ss_pred EEeCceEEEEEcCCCCCHHHHHHHHhCCC
Q 001291 174 IVKPGRLTLLLGPPSSGKTTLLLALAGKL 202 (1106)
Q Consensus 174 ~i~~G~~~~llGp~GsGKSTLL~~L~G~~ 202 (1106)
.+-.|+-.+|+|++|+|||||+..|+...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999999998643
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.63 E-value=0.18 Score=47.83 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.+.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 477999999999999998775
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.63 E-value=0.22 Score=47.17 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999997654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.60 E-value=0.21 Score=48.02 Aligned_cols=20 Identities=35% Similarity=0.564 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHhC
Q 001291 181 TLLLGPPSSGKTTLLLALAG 200 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G 200 (1106)
++++|.+|+|||||++.+..
T Consensus 5 ivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999986554
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.49 E-value=0.22 Score=48.05 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 489999999999999988764
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=84.44 E-value=0.22 Score=48.61 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
.+||+|.-.+|||||++.|+|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEeccCCcHHHHHHHHHhh
Confidence 3799999999999999999984
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.13 E-value=0.33 Score=47.66 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
-++|+|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999999654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.13 E-value=0.2 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHhhhC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g 904 (1106)
-.++++|..|+|||||++-+.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999997765
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.85 E-value=0.24 Score=47.93 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHhhh
Q 001291 884 LTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~ 903 (1106)
++.|+|.+|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999884
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.80 E-value=0.31 Score=50.29 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHH---hCCCCC
Q 001291 180 LTLLLGPPSSGKTTLLLAL---AGKLDP 204 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L---~G~~~~ 204 (1106)
-++|+|+.|||||||..+| +|..+.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 4699999999999999988 566554
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=83.75 E-value=0.25 Score=47.42 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
++.|+|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999986654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=83.69 E-value=0.19 Score=50.59 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHhhhCC
Q 001291 885 TALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 885 ~al~G~nGaGKSTLl~~l~g~ 905 (1106)
+-+.||.|+||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999974
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.53 E-value=0.26 Score=46.45 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
.++|+|..|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999998875
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.20 E-value=0.26 Score=48.89 Aligned_cols=49 Identities=8% Similarity=0.084 Sum_probs=33.1
Q ss_pred hcCCccceeecCCCC-CCHHHHHHHHHHHHHHHHhcCCeEEEEEecChhHH
Q 001291 339 VGPALALFMDEISTG-LDSSTTFQIVNCFKQNIHINSGTAVISLLQPAPET 388 (1106)
Q Consensus 339 ~~~p~vllLDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 388 (1106)
+...+++++|+.=.= =+......+..++.... ..++.+|++...++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHh-hccceEEEecCCcchhc
Confidence 446789999988442 24566666777776543 46788888877776554
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=82.92 E-value=0.44 Score=45.30 Aligned_cols=33 Identities=33% Similarity=0.285 Sum_probs=25.0
Q ss_pred EeeeeeeeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 871 LLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 871 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
-++.....+ .|.=+.|.|++|+|||||.-.|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 455544444 588899999999999999876664
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.82 E-value=0.28 Score=48.89 Aligned_cols=20 Identities=25% Similarity=0.483 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHhhh
Q 001291 884 LTALMGVSGAGKTTLMDVLA 903 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~ 903 (1106)
.+.|+|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 57899999999999999875
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.54 E-value=0.28 Score=51.74 Aligned_cols=61 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCccHHH
Q 001291 995 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDI 1059 (1106)
Q Consensus 995 ~LS~Gqrqrl~iA~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~~~~ 1059 (1106)
.++..+.+++....-+...|-+++.=. .|......+.+..+...+.+..|+.++...+.++
T Consensus 197 ~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L 257 (319)
T d1wxqa1 197 KWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELTL 257 (319)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred hcCHHHHHHhHHHhhhhcCchhhhccc----ccchhhHHHHHHHHHHhhcCCEEEEecHHHHHHH
Confidence 367888888888777788887766432 1122234455555555566788887777655433
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.49 E-value=0.3 Score=47.29 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhC
Q 001291 884 LTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g 904 (1106)
+++|+|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987765
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=82.39 E-value=0.34 Score=48.64 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
.+++|.|+.||||||+.+.|+..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=82.32 E-value=0.32 Score=50.04 Aligned_cols=20 Identities=50% Similarity=0.527 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001291 180 LTLLLGPPSSGKTTLLLALA 199 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~ 199 (1106)
-++|+|+.|||||||..+|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 46899999999999999993
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=82.26 E-value=0.31 Score=49.37 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
..+.|.||.|+||||+++.|+..
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46779999999999999999863
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.93 E-value=0.34 Score=48.57 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCCCC
Q 001291 179 RLTLLLGPPSSGKTTLLLALAGKLDP 204 (1106)
Q Consensus 179 ~~~~llGp~GsGKSTLL~~L~G~~~~ 204 (1106)
++++|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 47889999999999999999977643
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.90 E-value=0.29 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHhhhCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
-+-|.||.|+|||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 4679999999999999999863
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.89 E-value=0.23 Score=51.62 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.1
Q ss_pred EEEEcCCCCCHHHHH
Q 001291 181 TLLLGPPSSGKTTLL 195 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL 195 (1106)
++|.|++||||||.|
T Consensus 17 ~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEECCCTTSCHHHHH
T ss_pred EEEEeeCCccHHHHH
Confidence 579999999999765
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.80 E-value=0.33 Score=50.86 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++++|.-.||||||++.|+|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999953
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.73 E-value=0.33 Score=50.59 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHhhhCCC
Q 001291 884 LTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 884 ~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
.++++|.-.||||||++.|+|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999943
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=81.72 E-value=0.38 Score=49.34 Aligned_cols=28 Identities=29% Similarity=0.436 Sum_probs=25.0
Q ss_pred eeeeCCeEEEEEcCCCCCHHHHHHhhhC
Q 001291 877 GAFRPGVLTALMGVSGAGKTTLMDVLAG 904 (1106)
Q Consensus 877 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 904 (1106)
+-+++|.++-|.||+|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccCceEEEEecCCCcHHHHHHHHHHH
Confidence 6788999999999999999999877664
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.45 E-value=0.31 Score=48.39 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=27.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+.+++++||.- ++...++..+...+.+.. ....+++++++.+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSN 142 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccc-cceeeeeccCchh
Confidence 35799999975 455556666666665432 3466778888765
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.04 E-value=0.36 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Q 001291 181 TLLLGPPSSGKTTLLLALAGKLD 203 (1106)
Q Consensus 181 ~~llGp~GsGKSTLL~~L~G~~~ 203 (1106)
.+|+||||.|||++...|+-++.
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEECCCCCcHHHHHHHHHHHHH
Confidence 47999999999999999997753
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.86 E-value=0.33 Score=48.93 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=31.2
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCceEEEEecCcc
Q 001291 1013 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1056 (1106)
Q Consensus 1013 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~tH~~~ 1056 (1106)
+.+++++||.-. |...+...+.+.+.+.. ....+|+++++++
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhccccccc-ccccceeeecccc
Confidence 466999999964 88888888777776542 2456788999876
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=80.42 E-value=0.45 Score=46.65 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.5
Q ss_pred eCCeEEEEEcCCCCCHHHHHHhhhCCC
Q 001291 880 RPGVLTALMGVSGAGKTTLMDVLAGRK 906 (1106)
Q Consensus 880 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 906 (1106)
+|.-.+||+|.-.||||||++.|+|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCeEEEEEEccCCcHHHHHHHHHhhh
Confidence 466679999999999999999999843
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=80.26 E-value=0.39 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 001291 180 LTLLLGPPSSGKTTLLLALAGK 201 (1106)
Q Consensus 180 ~~~llGp~GsGKSTLL~~L~G~ 201 (1106)
-++|+|+..+|||||++.|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3789999999999999999864
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=80.19 E-value=0.31 Score=50.93 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHhhhCC
Q 001291 883 VLTALMGVSGAGKTTLMDVLAGR 905 (1106)
Q Consensus 883 e~~al~G~nGaGKSTLl~~l~g~ 905 (1106)
=.+||+|...+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 45999999999999999999973
|